Query 537021.9.peg.574_1 Match_columns 51 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 20:45:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_574.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1jhd_A Sulfate adenylyltransf 35.7 17 0.00049 18.8 1.4 22 26-47 186-207 (224) 2 >1x6v_B Bifunctional 3'-phosph 29.8 25 0.00074 17.8 1.5 23 25-47 192-214 (238) 3 >3cr8_A Sulfate adenylyltranfe 24.8 31 0.00091 17.4 1.2 23 25-47 185-207 (221) 4 >3euh_C MUKE, chromosome parti 16.0 68 0.002 15.6 1.4 14 28-41 22-35 (84) 5 >3fr7_A Putative ketol-acid re 15.0 32 0.00096 17.3 -0.4 35 16-50 89-123 (289) 6 >2gks_A Bifunctional SAT/APS k 14.0 36 0.0011 17.0 -0.4 22 26-47 188-210 (225) 7 >3bso_A RNA dependent RNA poly 13.6 72 0.0021 15.5 1.0 40 7-46 178-217 (431) 8 >2bcg_G Secretory pathway GDP 12.8 63 0.0019 15.7 0.5 13 5-17 28-42 (42) 9 >3ee7_A Replicase polyprotein 12.4 88 0.0026 15.0 1.2 11 39-49 68-78 (121) 10 >2j97_A Replicase polyprotein 10.9 1.1E+02 0.0031 14.6 1.2 11 39-49 64-74 (109) No 1 >>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} (A:173-396) Probab=35.72 E-value=17 Score=18.78 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.4 Q ss_pred CCCCHHHHHHHHCCCCCCEEEE Q ss_conf 0141889999960699843146 Q 537021.9.peg.5 26 KISMPFVHSMLRAGLRPPCIFC 47 (51) Q Consensus 26 kismpfvhsmlraglrppcifc 47 (51) .||-..+-.||++|+.||..|- T Consensus 186 ~iSgt~ir~~L~~G~~pP~~f~ 207 (224) T 1jhd_A 186 LLSGTKVREMLGQGIAPPPEFS 207 (224) T ss_dssp CCCHHHHHHHHHTTCCCCTTTC T ss_pred EECHHHHHHHHHCCCCCCCCCC T ss_conf 7458999999978388896666 No 2 >>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} (B:393-630) Probab=29.82 E-value=25 Score=17.83 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.7 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 20141889999960699843146 Q 537021.9.peg.5 25 KKISMPFVHSMLRAGLRPPCIFC 47 (51) Q Consensus 25 kkismpfvhsmlraglrppcifc 47 (51) ..||-..+-.||+.|+.||-.|- T Consensus 192 ~~iSgt~ir~~L~~G~~pP~~f~ 214 (238) T 1x6v_B 192 EFISGTRMRKLAREGQKPPEGFM 214 (238) T ss_dssp ECCCHHHHHHHHHTTCCCCTTSS T ss_pred ECCCHHHHHHHHHCCCCCCCCCC T ss_conf 14678999999978599995538 No 3 >>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} (A:144-364) Probab=24.77 E-value=31 Score=17.37 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.6 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 20141889999960699843146 Q 537021.9.peg.5 25 KKISMPFVHSMLRAGLRPPCIFC 47 (51) Q Consensus 25 kkismpfvhsmlraglrppcifc 47 (51) ..+|...+-.||++|+.||-.|- T Consensus 185 ~~~sgt~ir~~L~~G~~pP~~f~ 207 (221) T 3cr8_A 185 LTLSGEEFQRRMRAGLKIPEWYS 207 (221) T ss_dssp ECCCHHHHHHHHTTTCCCCTTTS T ss_pred ECCCHHHHHHHHHCCCCCCCCCC T ss_conf 44059999999978699980016 No 4 >>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (C:1-84) Probab=16.03 E-value=68 Score=15.58 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=11.2 Q ss_pred CCHHHHHHHHCCCC Q ss_conf 41889999960699 Q 537021.9.peg.5 28 SMPFVHSMLRAGLR 41 (51) Q Consensus 28 smpfvhsmlraglr 41 (51) -.|-|.||||+|-. T Consensus 22 LFP~vDs~LR~Grh 35 (84) T 3euh_C 22 LFPALDSALRSGRH 35 (84) T ss_dssp THHHHHHHHHTTCC T ss_pred CCHHHHHHHHCCCC T ss_conf 42768999854787 No 5 >>3fr7_A Putative ketol-acid reductoisomerase (OS05G0573700 protein); rossmann fold, NADPH, knotted protein; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* (A:237-525) Probab=15.04 E-value=32 Score=17.26 Aligned_cols=35 Identities=17% Similarity=0.006 Sum_probs=30.9 Q ss_pred HHHHHEEHHCCCCCHHHHHHHHCCCCCCEEEEEEC Q ss_conf 41641231020141889999960699843146642 Q 537021.9.peg.5 16 IPIIIIVLSKKISMPFVHSMLRAGLRPPCIFCIHR 50 (51) Q Consensus 16 ipiiiivlskkismpfvhsmlraglrppcifcihr 50 (51) -|+..+.+..|-+-+||.++.-.|-..||.+.+|+ T Consensus 89 k~v~v~mvapk~~G~~vR~~~~~g~g~p~l~av~q 123 (289) T 3fr7_A 89 MDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPA 123 (289) T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHTTSCBTTBCC T ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCHH T ss_conf 99999998875043778888870531234413203 No 6 >>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} (A:144-368) Probab=13.99 E-value=36 Score=17.00 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=15.7 Q ss_pred CCCCHHHH-HHHHCCCCCCEEEE Q ss_conf 01418899-99960699843146 Q 537021.9.peg.5 26 KISMPFVH-SMLRAGLRPPCIFC 47 (51) Q Consensus 26 kismpfvh-smlraglrppcifc 47 (51) +||...+- .||+.|+.||-.|- T Consensus 188 ~iSgt~~r~~lL~~G~~pP~~f~ 210 (225) T 2gks_A 188 NISGTEIRENFLKQGRKLPEWFT 210 (225) T ss_dssp ------CTHHHHTTTCCCCTTTS T ss_pred CCCHHHHHHHHHHCCCCCCHHHC T ss_conf 36708999999966999976760 No 7 >>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral enzyme inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A (A:1-431) Probab=13.55 E-value=72 Score=15.47 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=35.9 Q ss_pred HCCCCCCCHHHHHHEEHHCCCCCHHHHHHHHCCCCCCEEE Q ss_conf 2875781004164123102014188999996069984314 Q 537021.9.peg.5 7 YGKNRNISFIPIIIIVLSKKISMPFVHSMLRAGLRPPCIF 46 (51) Q Consensus 7 ygknrnisfipiiiivlskkismpfvhsmlraglrppcif 46 (51) .||.|.|+-.|.-..++....-+||...+.++-..++|.- T Consensus 178 ~~KtR~i~~~p~~~~i~~r~~~~~~~~~~~~~~~~~~~~v 217 (431) T 3bso_A 178 KIKKRLLWGSDLATMIRCARAFGGLMDELKTHCVTLPIRV 217 (431) T ss_dssp SCCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTTTSSBCT T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 9982699978879999999999999999986477788752 No 8 >>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (G:47-88) Probab=12.81 E-value=63 Score=15.75 Aligned_cols=13 Identities=54% Similarity=1.183 Sum_probs=8.4 Q ss_pred HHHCCCC--CCCHHH Q ss_conf 6428757--810041 Q 537021.9.peg.5 5 EKYGKNR--NISFIP 17 (51) Q Consensus 5 ekygknr--nisfip 17 (51) ++||++| ||..|| T Consensus 28 ~~~Gr~rDwNVDLIP 42 (42) T 2bcg_G 28 SKFGKDRDWNVDLIP 42 (42) T ss_dssp HHHCCGGGCCEESSC T ss_pred HHHCCCCCCEEECCC T ss_conf 121102374450376 No 9 >>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, cytoplasm, hydrolase, membrane, metal-binding, protease; 2.60A {Sars coronavirus} PDB: 1qz8_A (A:) Probab=12.36 E-value=88 Score=15.00 Aligned_cols=11 Identities=45% Similarity=1.050 Sum_probs=8.8 Q ss_pred CCCCCEEEEEE Q ss_conf 69984314664 Q 537021.9.peg.5 39 GLRPPCIFCIH 49 (51) Q Consensus 39 glrppcifcih 49 (51) .|.|||-|-+. T Consensus 68 ELePPckF~v~ 78 (121) T 3ee7_A 68 ELEPPCRFVTD 78 (121) T ss_dssp EBCCCEEEEEC T ss_pred ECCCCCEEEEE T ss_conf 02898399998 No 10 >>2j97_A Replicase polyprotein 1AB; SSB, zinc, HCOV, membrane, helicase, SARS COV, viral replicase, RNA replication, ATP-binding; 1.75A {Human coronavirus 229E} PDB: 2j98_A 2j98_B (A:) Probab=10.90 E-value=1.1e+02 Score=14.60 Aligned_cols=11 Identities=55% Similarity=1.189 Sum_probs=8.5 Q ss_pred CCCCCEEEEEE Q ss_conf 69984314664 Q 537021.9.peg.5 39 GLRPPCIFCIH 49 (51) Q Consensus 39 glrppcifcih 49 (51) .|.|||-|-+. T Consensus 64 ELePPckF~v~ 74 (109) T 2j97_A 64 ELEPPCRFVID 74 (109) T ss_dssp EBCCCEEEEEC T ss_pred ECCCCCEEEEE T ss_conf 71898498898 Done!