Query 537021.9.peg.577_1
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 00:12:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_577.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o9c_A Bacteriophytochrome; ph 5.8 1.1E+02 0.0047 14.3 0.2 13 31-43 38-50 (342)
2 2ool_A Sensor protein; bacteri 5.7 1.2E+02 0.0049 14.3 0.2 13 31-43 27-39 (337)
3 3g6o_A Bacteriophytochrome; al 4.1 1.7E+02 0.0072 13.5 0.2 12 32-43 12-23 (505)
4 1uwk_A Urocanate hydratase; hy 3.6 1.6E+02 0.0068 13.6 -0.3 31 8-40 209-239 (557)
5 2fkc_A R.HINP1I restriction en 3.2 1.5E+02 0.0063 13.8 -0.7 14 1-14 193-207 (247)
6 2w0c_P Protein P3, protein III 3.1 1.6E+02 0.0066 13.7 -0.8 14 17-30 22-35 (104)
7 6rlx_B Relaxin, B-chain; hormo 2.7 1.6E+02 0.0069 13.6 -1.0 10 1-10 3-12 (28)
8 2fkn_A Urocanate hydratase; ro 2.4 2.7E+02 0.012 12.6 -0.2 31 8-40 205-235 (552)
9 3ej9_B Beta-subunit of trans-3 2.4 3.1E+02 0.013 12.4 0.0 10 34-43 47-56 (70)
10 1x87_A Urocanase protein; stru 2.3 2.8E+02 0.012 12.5 -0.2 29 9-39 205-233 (551)
No 1
>2o9c_A Bacteriophytochrome; phytochrome chromophore, figure-OF-eight knot, phytochromobilin, biliverdin, PAS, GAF, transferase; HET: LBV; 1.45A {Deinococcus radiodurans} SCOP: d.110.2.1 d.110.3.9 PDB: 2o9b_A* 1ztu_A*
Probab=5.76 E-value=1.1e+02 Score=14.32 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=8.8
Q ss_pred CCCCCCEEEEEEE
Q ss_conf 7644753431132
Q 537021.9.peg.5 31 GAEKEPISISGKI 43 (44)
Q Consensus 31 gaekepisisgki 43 (44)
..|+|||.|.|.|
T Consensus 38 ~C~~EPIh~pg~I 50 (342)
T 2o9c_A 38 NCEREPIHIPGSI 50 (342)
T ss_dssp TGGGCCTTCCSEE
T ss_pred CCCCHHCCCCCCC
T ss_conf 4051200587740
No 2
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliverdin, signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris CGA009} SCOP: d.110.2.1 d.110.3.9
Probab=5.68 E-value=1.2e+02 Score=14.27 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=7.4
Q ss_pred CCCCCCEEEEEEE
Q ss_conf 7644753431132
Q 537021.9.peg.5 31 GAEKEPISISGKI 43 (44)
Q Consensus 31 gaekepisisgki 43 (44)
-.|+|||.+.|.|
T Consensus 27 ~c~~epih~~g~i 39 (337)
T 2ool_A 27 ECDREPIHIPGAI 39 (337)
T ss_dssp CGGGSCTTCCSEE
T ss_pred CCCCCCCCCCCCC
T ss_conf 1045314487753
No 3
>3g6o_A Bacteriophytochrome; alpha/beta structure, PAS domain, chromophore, kinase, phosphoprotein, photoreceptor protein, receptor; HET: BLA; 2.85A {Pseudomonas aeruginosa} PDB: 3ibr_A* 3c2w_A*
Probab=4.09 E-value=1.7e+02 Score=13.50 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=5.3
Q ss_pred CCCCCEEEEEEE
Q ss_conf 644753431132
Q 537021.9.peg.5 32 AEKEPISISGKI 43 (44)
Q Consensus 32 aekepisisgki 43 (44)
.|+|||.+.|.|
T Consensus 12 CdrEPIh~pG~I 23 (505)
T 3g6o_A 12 CEDEPIHVPGAI 23 (505)
T ss_dssp STTCCTTCCSEE
T ss_pred HCCCCCCCCCCC
T ss_conf 252002587751
No 4
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=3.58 E-value=1.6e+02 Score=13.61 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCCCCEEHHHHHHHHHCCEEEECCCCCCCEEEE
Q ss_conf 265510034564201000111037644753431
Q 537021.9.peg.5 8 YGYNTKIVSDLHTGIASWHTIEAGAEKEPISIS 40 (44)
Q Consensus 8 ygyntkivsdlhtgiaswhtieagaekepisis 40 (44)
-||-.++..||..-|+- ..+|-++|+|+||.
T Consensus 209 qgylD~~~~~ldeai~~--~~~A~~~k~~lSIg 239 (557)
T 1uwk_A 209 TRYVDEQATDLDDALVR--IAKYTAEGKAISIA 239 (557)
T ss_dssp TTSCCEECSSHHHHHHH--HHHHHHTTCCCEEE
T ss_pred CCCCEEEECCHHHHHHH--HHHHHHCCCCEEEE
T ss_conf 58820681799999999--99997559843899
No 5
>2fkc_A R.HINP1I restriction endonuclease; protein dimerizaton, DNA superhelix, protein-DNA-metal ION complex, hydrolase/DNA complex; 2.39A {Haemophilus influenzae} PDB: 1ynm_A 2fkh_B 2fl3_A 2flc_A
Probab=3.23 E-value=1.5e+02 Score=13.76 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=8.4
Q ss_pred CCHHHHCCC-CCCEE
Q ss_conf 930120226-55100
Q 537021.9.peg.5 1 MDEVIGSYG-YNTKI 14 (44)
Q Consensus 1 mdevigsyg-yntki 14 (44)
|||||-+|+ ++-+|
T Consensus 193 i~eVi~~~~q~~~~i 207 (247)
T 2fkc_A 193 INEVLQHYGSGDISL 207 (247)
T ss_dssp HHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHCCCEEE
T ss_conf 999999874554786
No 6
>2w0c_P Protein P3, protein III; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=3.11 E-value=1.6e+02 Score=13.69 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=10.5
Q ss_pred HHHHHHHCCEEEEC
Q ss_conf 56420100011103
Q 537021.9.peg.5 17 DLHTGIASWHTIEA 30 (44)
Q Consensus 17 dlhtgiaswhtiea 30 (44)
-|..||++|..||.
T Consensus 22 ~LD~~l~~WA~iEQ 35 (104)
T 2w0c_P 22 GLDALISGWARVEQ 35 (104)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 78888776788998
No 7
>6rlx_B Relaxin, B-chain; hormone(muscle relaxant); 1.50A {Homo sapiens} SCOP: g.1.1.1
Probab=2.71 E-value=1.6e+02 Score=13.60 Aligned_cols=10 Identities=50% Similarity=0.637 Sum_probs=6.1
Q ss_pred CCHHHHCCCC
Q ss_conf 9301202265
Q 537021.9.peg.5 1 MDEVIGSYGY 10 (44)
Q Consensus 1 mdevigsygy 10 (44)
|||||--.|-
T Consensus 3 md~vik~cgr 12 (28)
T 6rlx_B 3 MEEVIKLCGR 12 (28)
T ss_dssp GGCEECCCHH
T ss_pred HHHHHHHHHH
T ss_conf 8899999759
No 8
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=2.38 E-value=2.7e+02 Score=12.60 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCCCCEEHHHHHHHHHCCEEEECCCCCCCEEEE
Q ss_conf 265510034564201000111037644753431
Q 537021.9.peg.5 8 YGYNTKIVSDLHTGIASWHTIEAGAEKEPISIS 40 (44)
Q Consensus 8 ygyntkivsdlhtgiaswhtieagaekepisis 40 (44)
-||-.++..||..-|+- ..+|-++|+|+||.
T Consensus 205 ~gylD~~~~~Ldeai~~--~~~A~~~~~~~SIg 235 (552)
T 2fkn_A 205 TKYCDRKTASIEEALAW--AEEAKLAGKPLSIA 235 (552)
T ss_dssp TTSCSEEESCHHHHHHH--HHHHHHTTCCEEEE
T ss_pred CCCEEEEECCHHHHHHH--HHHHHHCCCCEEEE
T ss_conf 58723797699999999--99999729964999
No 9
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalogenase; CAAD, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=2.37 E-value=3.1e+02 Score=12.37 Aligned_cols=10 Identities=50% Similarity=0.816 Sum_probs=7.3
Q ss_pred CCCEEEEEEE
Q ss_conf 4753431132
Q 537021.9.peg.5 34 KEPISISGKI 43 (44)
Q Consensus 34 kepisisgki 43 (44)
.+.+||||.|
T Consensus 47 ~~n~sis~ri 56 (70)
T 3ej9_B 47 EANMSISGRI 56 (70)
T ss_dssp GGGEESTTCC
T ss_pred CCCCCEEEEE
T ss_conf 2026342033
No 10
>1x87_A Urocanase protein; structural genomics, protein structure initiative, MCSG, PSI, midwest center for structural genomics; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=2.31 E-value=2.8e+02 Score=12.53 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCCCEEHHHHHHHHHCCEEEECCCCCCCEEE
Q ss_conf 6551003456420100011103764475343
Q 537021.9.peg.5 9 GYNTKIVSDLHTGIASWHTIEAGAEKEPISI 39 (44)
Q Consensus 9 gyntkivsdlhtgiaswhtieagaekepisi 39 (44)
||-.++..||..-|+- ..+|-++|||+||
T Consensus 205 gylD~~~~~ldeai~~--~~~A~~~k~~~SI 233 (551)
T 1x87_A 205 NYLDTMTDSLDAALEM--AKQAKEEKKALSI 233 (551)
T ss_dssp TSCSEEESCHHHHHHH--HHHHHHTTCCEEE
T ss_pred CCEEEECCCHHHHHHH--HHHHHHCCCCEEE
T ss_conf 9822776889999999--9999973982599
Done!