Query 537021.9.peg.582_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 21:04:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_582.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2k03_B C-X-C chemokine recept 65.6 1.5 4.5E-05 23.5 0.1 11 13-23 30-40 (40) 2 >3gre_A Serine/threonine-prote 7.0 1.6E+02 0.0048 13.9 0.8 14 23-36 16-29 (53) 3 >3f7f_A Nucleoporin NUP120; nu 5.5 78 0.0023 15.4 -1.5 12 8-19 38-49 (59) 4 >3iag_C Recombining binding pr 4.5 3.2E+02 0.0095 12.5 1.1 22 13-35 113-134 (160) 5 >1sy7_A Catalase 1; heme oxida 3.7 2E+02 0.006 13.5 -0.5 10 14-23 53-62 (67) 6 >2a5h_A L-lysine 2,3-aminomuta 3.6 4.1E+02 0.012 12.0 1.1 13 23-35 2-14 (36) 7 >1m45_B IQ2, IQ2 motif from MY 3.1 4.6E+02 0.014 11.7 1.0 16 4-19 9-24 (26) 8 >2vg9_A Bifunctional endo-1,4- 3.0 3.2E+02 0.0095 12.5 -0.0 16 17-32 152-167 (217) 9 >1wa5_C Importin alpha RE-expo 2.8 3.2E+02 0.0095 12.5 -0.3 11 15-25 21-31 (67) 10 >1axk_A Gluxyn-1; bifunctional 2.6 4E+02 0.012 12.0 0.1 14 18-31 120-133 (183) No 1 >>2k03_B C-X-C chemokine receptor type 4; stromal cell derived factor-1, SDF1-alpha, CXCL12, CXCR4, sulfotyrosine, locked dimer, alternative splicing; HET: TYS; NMR {Homo sapiens} PDB: 2k04_B 2k05_B* (B:) Probab=65.56 E-value=1.5 Score=23.55 Aligned_cols=11 Identities=55% Similarity=0.963 Sum_probs=9.5 Q ss_pred HHCCCCCCHHH Q ss_conf 51004434223 Q 537021.9.peg.5 13 LFQEKNAHFNQ 23 (37) Q Consensus 13 lfqeknahfnq 23 (37) -|++.|||||+ T Consensus 30 cfr~ENa~FNr 40 (40) T 2k03_B 30 AFREENANFNK 40 (40) T ss_dssp CSSCCCCCCCC T ss_pred CCCCCCCCCCC T ss_conf 10102244369 No 2 >>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} (A:318-370) Probab=6.95 E-value=1.6e+02 Score=13.90 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=10.3 Q ss_pred HEEECCCCEEEECC Q ss_conf 30301444265217 Q 537021.9.peg.5 23 QYISFSQDKIVIPS 36 (37) Q Consensus 23 qyisfsqdkivips 36 (37) .-||.|.|||.... T Consensus 16 stisvsndkilltd 29 (53) T 3gre_A 16 STISVSNDKILLTD 29 (53) T ss_dssp CCEEEETTEEEEEE T ss_pred EEEEECCCEEEEEE T ss_conf 99993799699995 No 3 >>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A (A:211-269) Probab=5.47 E-value=78 Score=15.41 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=8.8 Q ss_pred HHHHHHHCCCCC Q ss_conf 988775100443 Q 537021.9.peg.5 8 IKHFILFQEKNA 19 (37) Q Consensus 8 ikhfilfqekna 19 (37) +++|+|.||+|- T Consensus 38 L~~f~lvqeydl 49 (59) T 3f7f_A 38 LTSFTLIQDYDM 49 (59) T ss_dssp TTTTEEEEEEET T ss_pred CCCCCEEEECCC T ss_conf 477740321030 No 4 >>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 2f8x_C (C:149-308) Probab=4.52 E-value=3.2e+02 Score=12.48 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=13.1 Q ss_pred HHCCCCCCHHHEEECCCCEEEEC Q ss_conf 51004434223030144426521 Q 537021.9.peg.5 13 LFQEKNAHFNQYISFSQDKIVIP 35 (37) Q Consensus 13 lfqeknahfnqyisfsqdkivip 35 (37) -||-+.. -..|++.||+||+-. T Consensus 113 af~~~~~-~r~YL~ls~~~ii~~ 134 (160) T 3iag_C 113 AFYLKDT-ERMYLCLSQERIIQF 134 (160) T ss_dssp EEEETTS-SSEEEEEETTEEEEE T ss_pred EEEECCC-CCEEEECCCCCEEEE T ss_conf 8885478-737998479845444 No 5 >>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} (A:1-67) Probab=3.66 E-value=2e+02 Score=13.46 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=7.1 Q ss_pred HCCCCCCHHH Q ss_conf 1004434223 Q 537021.9.peg.5 14 FQEKNAHFNQ 23 (37) Q Consensus 14 fqeknahfnq 23 (37) |-||-|||+. T Consensus 53 l~EklahFdr 62 (67) T 1sy7_A 53 ARERIMRFDH 62 (67) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHCC T ss_conf 9999874045 No 6 >>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:343-378) Probab=3.58 E-value=4.1e+02 Score=11.99 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=9.5 Q ss_pred HEEECCCCEEEEC Q ss_conf 3030144426521 Q 537021.9.peg.5 23 QYISFSQDKIVIP 35 (37) Q Consensus 23 qyisfsqdkivip 35 (37) --||.|.+|+|+- T Consensus 2 YliSqs~~kVvLR 14 (36) T 2a5h_A 2 YVISQSHDKVILR 14 (36) T ss_dssp CEEEEETTEEEEE T ss_pred CCCCCCCCEEEEE T ss_conf 3014788679996 No 7 >>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} (B:) Probab=3.09 E-value=4.6e+02 Score=11.73 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHCCCCC Q ss_conf 8999988775100443 Q 537021.9.peg.5 4 LHQIIKHFILFQEKNA 19 (37) Q Consensus 4 lhqiikhfilfqekna 19 (37) |..-||.||.-|.-|. T Consensus 9 lqnnikgfiirqrvnd 24 (26) T 1m45_B 9 LQNNIKGFIIRQRVND 24 (26) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHCCCEEEEEEECCC T ss_conf 9835644787564156 No 8 >>2vg9_A Bifunctional endo-1,4-beta-xylanase A; hydrolase, glycosidase, beta jelly roll, multifunctional enzyme, xylan degradation; 2.0A {Neocallimastix patriciarum} PDB: 2c1f_A (A:) Probab=3.01 E-value=3.2e+02 Score=12.48 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=11.6 Q ss_pred CCCCHHHEEECCCCEE Q ss_conf 4434223030144426 Q 537021.9.peg.5 17 KNAHFNQYISFSQDKI 32 (37) Q Consensus 17 knahfnqyisfsqdki 32 (37) -++-|.||.|..|.|- T Consensus 152 Gt~TF~QYwSVR~~~R 167 (217) T 2vg9_A 152 GSETFKQYFSVRQQKR 167 (217) T ss_dssp EEEEEEEEEEEESSCC T ss_pred CCCCEEEEEEECCCCC T ss_conf 8746588698536898 No 9 >>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} (C:589-655) Probab=2.75 E-value=3.2e+02 Score=12.49 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=8.1 Q ss_pred CCCCCCHHHEE Q ss_conf 00443422303 Q 537021.9.peg.5 15 QEKNAHFNQYI 25 (37) Q Consensus 15 qeknahfnqyi 25 (37) .-.|.+||.|. T Consensus 21 NPSNP~FnHYl 31 (67) T 1wa5_C 21 NPSNPRFTHYT 31 (67) T ss_dssp SCCCHHHHHHH T ss_pred CCCCHHHHHHH T ss_conf 95326899999 No 10 >>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} (A:159-341) Probab=2.62 E-value=4e+02 Score=12.02 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=0.0 Q ss_pred CCCHHHEEECCCCE Q ss_conf 43422303014442 Q 537021.9.peg.5 18 NAHFNQYISFSQDK 31 (37) Q Consensus 18 nahfnqyisfsqdk 31 (37) ++-|.||.|..+.| T Consensus 120 ~~TF~QYwSVR~~k 133 (183) T 1axk_A 120 RTTFTQYWSVRQSK 133 (183) T ss_dssp SEEEEEEEEEESSC T ss_pred CCCEEEEEEECCCC T ss_conf 66768899976478 Done!