Query 537021.9.peg.593_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Tue May 24 21:31:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_593.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam09499 RE_ApaLI ApaLI-like 62.9 1.6 4.2E-05 23.0 -0.5 16 13-28 49-64 (191)
2 pfam01415 IL7 Interleukin 7/9 37.8 20 0.00051 17.9 1.7 17 18-34 100-116 (125)
3 KOG3757 consensus 20.3 36 0.00092 16.7 0.5 18 8-25 36-54 (301)
4 TIGR02489 flgE_epsilon flagell 18.0 79 0.002 15.1 1.8 12 6-17 95-106 (877)
5 TIGR00676 fadh2 5,10-methylene 15.3 71 0.0018 15.3 1.0 10 4-13 104-113 (302)
6 pfam06021 Gly_acyl_tr_N Aralky 12.1 1.2E+02 0.0032 14.2 1.5 21 5-25 32-52 (205)
7 TIGR01124 ilvA_2Cterm threonin 10.5 96 0.0024 14.7 0.5 12 14-25 93-104 (508)
8 KOG3690 consensus 9.8 96 0.0025 14.7 0.3 15 18-32 413-427 (646)
9 pfam07367 FB_lectin Fungal fru 8.8 2E+02 0.0051 13.2 3.1 26 2-27 52-77 (139)
10 TIGR02488 flgG_G_neg flagellar 8.2 1.8E+02 0.0046 13.4 1.2 20 6-25 93-112 (263)
No 1
>pfam09499 RE_ApaLI ApaLI-like restriction endonuclease. This family includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognizes and cleaves the sequence GTGCAC.
Probab=62.86 E-value=1.6 Score=22.95 Aligned_cols=16 Identities=50% Similarity=0.389 Sum_probs=13.1
Q ss_pred EEEEEEEECCHHHHHH
Q ss_conf 8999997088589999
Q 537021.9.peg.5 13 FFLIVMVQNTPRFLKS 28 (38)
Q Consensus 13 fflivmvqntprflks 28 (38)
=-||-|+||.||||-.
T Consensus 49 g~lid~yQn~gRfLyk 64 (191)
T pfam09499 49 GRLIDMYQNKGRFLYK 64 (191)
T ss_pred CCEEHHHHCCCEEHHH
T ss_conf 5102135324431598
No 2
>pfam01415 IL7 Interleukin 7/9 family. IL-7 is a cytokine that acts as a growth factor for early lymphoid cells of both B- and T-cell lineages. IL-9 is a multi-functional cytokine that, although originally described as a T-cell growth factor, its function in T-cell response remains unclear.
Probab=37.76 E-value=20 Score=17.88 Aligned_cols=17 Identities=41% Similarity=0.321 Sum_probs=14.3
Q ss_pred EEECCHHHHHHHHHHHH
Q ss_conf 97088589999999976
Q 537021.9.peg.5 18 MVQNTPRFLKSLLLLFS 34 (38)
Q Consensus 18 mvqntprflksllllfs 34 (38)
+.+|+.-|||+||--|-
T Consensus 100 ~~gN~L~FLK~LL~~~k 116 (125)
T pfam01415 100 KKGNDLCFLKSLLQEIK 116 (125)
T ss_pred HCCCCHHHHHHHHHHHH
T ss_conf 23563799999999999
No 3
>KOG3757 consensus
Probab=20.26 E-value=36 Score=16.71 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=13.7
Q ss_pred ECCCEEEE-EEEEECCHHH
Q ss_conf 33880899-9997088589
Q 537021.9.peg.5 8 VRGDPFFL-IVMVQNTPRF 25 (38)
Q Consensus 8 vrgdpffl-ivmvqntprf 25 (38)
-.|||||- |.+|+|.+||
T Consensus 36 rnGD~~~~Gv~~vv~~~rv 54 (301)
T KOG3757 36 RNGDPYFKGVKFVVNPRRV 54 (301)
T ss_pred CCCCCCCCCEEEEECCCCC
T ss_conf 0477667854887566545
No 4
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=17.95 E-value=79 Score=15.11 Aligned_cols=12 Identities=50% Similarity=1.052 Sum_probs=10.0
Q ss_pred EEECCCEEEEEE
Q ss_conf 983388089999
Q 537021.9.peg.5 6 VAVRGDPFFLIV 17 (38)
Q Consensus 6 vavrgdpffliv 17 (38)
||+.||-||+|-
T Consensus 95 vAI~GDGFFivS 106 (877)
T TIGR02489 95 VAIEGDGFFIVS 106 (877)
T ss_pred EEECCCEEEEEC
T ss_conf 788683559980
No 5
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=15.28 E-value=71 Score=15.33 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=8.1
Q ss_pred EEEEECCCEE
Q ss_conf 9998338808
Q 537021.9.peg.5 4 FFVAVRGDPF 13 (38)
Q Consensus 4 ffvavrgdpf 13 (38)
-+||.||||.
T Consensus 104 ~ilALRGD~p 113 (302)
T TIGR00676 104 NILALRGDPP 113 (302)
T ss_pred EEEEECCCCC
T ss_conf 7987437688
No 6
>pfam06021 Gly_acyl_tr_N Aralkyl acyl-CoA:amino acid N-acyltransferase. This family consists of several mammalian specific aralkyl acyl-CoA:amino acid N-acyltransferase (glycine N-acyltransferase) proteins EC:2.3.1.13.
Probab=12.08 E-value=1.2e+02 Score=14.20 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=16.6
Q ss_pred EEEECCCEEEEEEEEECCHHH
Q ss_conf 998338808999997088589
Q 537021.9.peg.5 5 FVAVRGDPFFLIVMVQNTPRF 25 (38)
Q Consensus 5 fvavrgdpfflivmvqntprf 25 (38)
|---||.||-+.|.|..-|.|
T Consensus 32 ~~inrGNPf~levlVDsWPdF 52 (205)
T pfam06021 32 FHINHGNPFNLKALVDKWPDF 52 (205)
T ss_pred EEECCCCCCCEEEEEECCCCC
T ss_conf 873169986427876048885
No 7
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=10.51 E-value=96 Score=14.72 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=9.3
Q ss_pred EEEEEEECCHHH
Q ss_conf 999997088589
Q 537021.9.peg.5 14 FLIVMVQNTPRF 25 (38)
Q Consensus 14 flivmvqntprf 25 (38)
=+|||-++||..
T Consensus 93 A~IVMP~tTP~I 104 (508)
T TIGR01124 93 AVIVMPETTPDI 104 (508)
T ss_pred EEEECCCCCCCC
T ss_conf 698788888220
No 8
>KOG3690 consensus
Probab=9.84 E-value=96 Score=14.71 Aligned_cols=15 Identities=53% Similarity=0.673 Sum_probs=11.8
Q ss_pred EEECCHHHHHHHHHH
Q ss_conf 970885899999999
Q 537021.9.peg.5 18 MVQNTPRFLKSLLLL 32 (38)
Q Consensus 18 mvqntprflksllll 32 (38)
|--.|||+|+|+-||
T Consensus 413 ls~stPrhL~slgLL 427 (646)
T KOG3690 413 LSVSTPRHLHSLGLL 427 (646)
T ss_pred HHCCCHHHHHHHCCC
T ss_conf 852887888870453
No 9
>pfam07367 FB_lectin Fungal fruit body lectin. This family consists of several fungal fruit body lectin proteins. Fruit body lectins are thought to have insecticidal activity and may also function in capturing nematodes.
Probab=8.78 E-value=2e+02 Score=13.22 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEEECCCEEEEEEEEECCHHHHH
Q ss_conf 49999833880899999708858999
Q 537021.9.peg.5 2 LLFFVAVRGDPFFLIVMVQNTPRFLK 27 (38)
Q Consensus 2 llffvavrgdpfflivmvqntprflk 27 (38)
.|-|.+-.||-|+.++-|.|-.|...
T Consensus 52 ~LRf~~~~Ge~F~va~GvHNYk~WcD 77 (139)
T pfam07367 52 MLRFQSSSGEFFTVAVGVHNYKRWCD 77 (139)
T ss_pred EEEEECCCCCEEEEEEEEECCCCHHE
T ss_conf 69997589988999996304773310
No 10
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=8.15 E-value=1.8e+02 Score=13.43 Aligned_cols=20 Identities=25% Similarity=0.702 Sum_probs=0.0
Q ss_pred EEECCCEEEEEEEEECCHHH
Q ss_conf 98338808999997088589
Q 537021.9.peg.5 6 VAVRGDPFFLIVMVQNTPRF 25 (38)
Q Consensus 6 vavrgdpfflivmvqntprf 25 (38)
+|+.|+-||-|.|-.-+..+
T Consensus 93 lAI~G~GFFQv~~pDG~~~Y 112 (263)
T TIGR02488 93 LAIEGEGFFQVLLPDGTTAY 112 (263)
T ss_pred EEEECCCEEEEECCCCCEEE
T ss_conf 47864833898669987610
Done!