Query 537021.9.peg.598_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 21:36:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_598.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2w43_A Hypothetical 2-haloalka 11.0 1.1E+02 0.0046 14.1 2.1 27 9-35 175-201 (201) 2 3n91_A Uncharacterized protein 7.4 86 0.0036 14.6 0.3 14 10-23 118-131 (323) 3 1rz4_A Eukaryotic translation 7.3 42 0.0018 16.0 -1.3 20 2-21 15-34 (226) 4 3nqk_A Uncharacterized protein 6.0 98 0.0041 14.3 0.0 15 9-23 115-129 (319) 5 1iwp_B Glycerol dehydratase be 4.3 2.5E+02 0.01 12.3 1.5 13 20-32 48-60 (194) 6 3p02_A Uncharacterized protein 4.1 1.6E+02 0.0067 13.2 0.0 15 9-23 112-126 (317) 7 2rr3_B OSBP, oxysterol-binding 3.8 2.2E+02 0.0091 12.6 0.5 15 6-20 21-35 (47) 8 3bcy_A Protein YER067W; mixed 2.9 3.5E+02 0.015 11.6 0.9 16 5-20 55-70 (155) 9 3op1_A Macrolide-efflux protei 2.8 1.6E+02 0.0068 13.2 -0.9 15 12-26 212-226 (308) 10 1ik9_C DNA ligase IV; DNA END 2.6 3.7E+02 0.016 11.5 1.0 15 22-36 22-36 (37) No 1 >2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A Probab=10.99 E-value=1.1e+02 Score=14.06 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=20.8 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 810021100201421779999986553 Q 537021.9.peg.5 9 NPENLSMTENYVIPHYGVLKEIISRHK 35 (38) Q Consensus 9 npenlsmtenyviphygvlkeiisrhk 35 (38) ..+.++-.-.|+|++..-|.++|.++| T Consensus 175 ~~~~~~~~pd~~i~~l~el~~~i~~~~ 201 (201) T 2w43_A 175 IVDPIGGKPDVIVNDFKELYEWILRYK 201 (201) T ss_dssp CCCTTSCCCSEEESSHHHHHHHHHHHC T ss_pred CCCCCCCCCCEEECCHHHHHHHHHHCC T ss_conf 766446899999899999999998676 No 2 >3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus} Probab=7.41 E-value=86 Score=14.56 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=9.6 Q ss_pred CCCCCCCCCCCCCH Q ss_conf 10021100201421 Q 537021.9.peg.5 10 PENLSMTENYVIPH 23 (38) Q Consensus 10 penlsmtenyviph 23 (38) ++.+++.++||||- T Consensus 118 ~d~l~~~~~YvLPl 131 (323) T 3n91_A 118 ADEKSISENYVIPL 131 (323) T ss_dssp HSGGGGSSCEEEEE T ss_pred CCCCCCCCCEEEEE T ss_conf 77656788689969 No 3 >1rz4_A Eukaryotic translation initiation factor 3 subunit 11; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Probab=7.27 E-value=42 Score=16.04 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=15.1 Q ss_pred CCCCCCCCCCCCCCCCCCCC Q ss_conf 75201388100211002014 Q 537021.9.peg.5 2 LNSAAHDNPENLSMTENYVI 21 (38) Q Consensus 2 lnsaahdnpenlsmtenyvi 21 (38) |++.-.-||||+..-|.||- T Consensus 15 l~g~drYNP~~l~~Le~Yv~ 34 (226) T 1rz4_A 15 LKGIDRYNPENLATLERYVE 34 (226) T ss_dssp HHSGGGGCGGGHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHHHHH T ss_conf 83643379788899999999 No 4 >3nqk_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.61A {Bacteroides ovatus} Probab=6.02 E-value=98 Score=14.27 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=10.2 Q ss_pred CCCCCCCCCCCCCCH Q ss_conf 810021100201421 Q 537021.9.peg.5 9 NPENLSMTENYVIPH 23 (38) Q Consensus 9 npenlsmtenyviph 23 (38) |+..|++.++||+|- T Consensus 115 ~~~~l~~~~~YvLPl 129 (319) T 3nqk_A 115 NLQDIDMLEKWVLPL 129 (319) T ss_dssp ECTTCCTTSCEEEEE T ss_pred ECCCCCCCCCEEEEE T ss_conf 768899788179879 No 5 >1iwp_B Glycerol dehydratase beta subunit; cobalamin, radical catalysis, lyase; HET: B12; 2.10A {Klebsiella pneumoniae} SCOP: c.51.3.1 PDB: 1mmf_B* Probab=4.33 E-value=2.5e+02 Score=12.34 Aligned_cols=13 Identities=46% Similarity=0.807 Sum_probs=10.6 Q ss_pred CCCHHHHHHHHHH Q ss_conf 1421779999986 Q 537021.9.peg.5 20 VIPHYGVLKEIIS 32 (38) Q Consensus 20 viphygvlkeiis 32 (38) -|||..||++|+. T Consensus 48 g~~~~~vLrevla 60 (194) T 1iwp_B 48 DMPHGAILKELIA 60 (194) T ss_dssp CCBHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 8778999999970 No 6 >3p02_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; 1.55A {Bacteroides ovatus} Probab=4.09 E-value=1.6e+02 Score=13.25 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=9.9 Q ss_pred CCCCCCCCCCCCCCH Q ss_conf 810021100201421 Q 537021.9.peg.5 9 NPENLSMTENYVIPH 23 (38) Q Consensus 9 npenlsmtenyviph 23 (38) +++.|++.++||+|- T Consensus 112 nl~~Ld~~~~YvLPL 126 (317) T 3p02_A 112 SLDGLDDSQKWALPL 126 (317) T ss_dssp ECTTCCTTSCEEEEE T ss_pred ECCCCCCCCEEEEEE T ss_conf 746699787079979 No 7 >2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens} Probab=3.78 E-value=2.2e+02 Score=12.61 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=11.0 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 138810021100201 Q 537021.9.peg.5 6 AHDNPENLSMTENYV 20 (38) Q Consensus 6 ahdnpenlsmtenyv 20 (38) -.|.||-+.|.||.- T Consensus 21 ffdapeiitmpenlg 35 (47) T 2rr3_B 21 FFDAPEIITMPENLG 35 (47) T ss_dssp CBCCCSSCSSCSCCC T ss_pred CCCCCCEEECCHHCC T ss_conf 147600041632218 No 8 >3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, UBL conjugation, unknown function; 1.70A {Saccharomyces cerevisiae} Probab=2.85 E-value=3.5e+02 Score=11.61 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=12.8 Q ss_pred CCCCCCCCCCCCCCCC Q ss_conf 0138810021100201 Q 537021.9.peg.5 5 AAHDNPENLSMTENYV 20 (38) Q Consensus 5 aahdnpenlsmtenyv 20 (38) ..||+||..+-|-|-- T Consensus 55 e~HddpEKIK~t~N~~ 70 (155) T 3bcy_A 55 ESHEDPEKISDAANSH 70 (155) T ss_dssp TTTTCGGGSCTTCSTT T ss_pred HHCCCHHHCCCHHHHC T ss_conf 3118976735001002 No 9 >3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Probab=2.83 E-value=1.6e+02 Score=13.24 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=5.6 Q ss_pred CCCCCCCCCCCHHHH Q ss_conf 021100201421779 Q 537021.9.peg.5 12 NLSMTENYVIPHYGV 26 (38) Q Consensus 12 nlsmtenyviphygv 26 (38) |+...+++++|.+|| T Consensus 212 Nl~~~~~~~~P~~GV 226 (308) T 3op1_A 212 NLVLLDRTYMPADGV 226 (308) T ss_dssp EEEECSSBCCCCSEE T ss_pred CCCCHHHCCCCCCCE T ss_conf 311213124788718 No 10 >1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} Probab=2.65 E-value=3.7e+02 Score=11.48 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=11.0 Q ss_pred CHHHHHHHHHHHHHC Q ss_conf 217799999865530 Q 537021.9.peg.5 22 PHYGVLKEIISRHKF 36 (38) Q Consensus 22 phygvlkeiisrhkf 36 (38) ..-.-|||+++|-|- T Consensus 22 td~~qLkeVf~r~k~ 36 (37) T 1ik9_C 22 TDLNQLKEVFSGIKN 36 (37) T ss_dssp CCHHHHHHHHHTCC- T ss_pred CCHHHHHHHHHHHCC T ss_conf 748999999998515 Done!