Query 537021.9.peg.60_1
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 22 23:43:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_60.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA00407 phage lambda Rz1-like 81.5 0.46 1.2E-05 26.3 0.3 29 14-42 21-56 (84)
2 PRK09859 multidrug efflux syst 73.1 1.4 3.5E-05 24.0 0.8 26 15-40 1-26 (385)
3 PRK13731 conjugal transfer sur 50.0 5.6 0.00014 21.1 0.5 23 16-38 2-24 (243)
4 COG4851 CamS Protein involved 41.7 8.3 0.00021 20.3 0.3 26 17-42 1-26 (382)
5 PRK09915 putative outer membra 32.8 21 0.00055 18.4 1.2 24 15-38 4-27 (488)
6 pfam06788 UPF0257 Uncharacteri 22.1 41 0.001 17.0 1.1 22 17-40 1-22 (236)
7 PRK02463 OxaA-like protein pre 20.4 46 0.0012 16.8 1.1 26 16-41 4-30 (307)
8 PRK11627 hypothetical protein; 20.3 33 0.00084 17.5 0.3 21 17-39 2-22 (192)
9 pfam07901 DUF1672 Protein of u 19.8 32 0.00081 17.6 0.1 19 18-37 2-20 (304)
10 TIGR03502 lipase_Pla1_cef extr 17.1 56 0.0014 16.4 0.9 21 17-37 1-21 (792)
No 1
>PHA00407 phage lambda Rz1-like protein
Probab=81.51 E-value=0.46 Score=26.29 Aligned_cols=29 Identities=48% Similarity=0.549 Sum_probs=22.5
Q ss_pred ECCHHH-------HHHHHHHHCCCEEECCCCCCCCC
Q ss_conf 002567-------78776640110010333467887
Q 537021.9.peg.6 14 PVNIKK-------LLIVSLLSSTAIISGCDSHSGDG 42 (44)
Q Consensus 14 pvnikk-------llivsllsstaiisgcdshsgdg 42 (44)
|+++|| .||-.|+--.++||||.|.|.--
T Consensus 21 ~~stkktl~rwkaaLIGlllicv~tISGCaSes~lp 56 (84)
T PHA00407 21 PLSTKKTLRRWKAALIGLLLICVATISGCASESKLP 56 (84)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 851655537789999999999999976665025699
No 2
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=73.14 E-value=1.4 Score=24.02 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 02567787766401100103334678
Q 537021.9.peg.6 15 VNIKKLLIVSLLSSTAIISGCDSHSG 40 (44)
Q Consensus 15 vnikkllivsllsstaiisgcdshsg 40 (44)
.|-||.++++||..+++++||...+.
T Consensus 1 m~~k~~~li~ll~~~~lL~gC~~~~~ 26 (385)
T PRK09859 1 MNRRRKLLIPLLFCGAMLTACDDKSA 26 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98206789999999999953799976
No 3
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=50.05 E-value=5.6 Score=21.14 Aligned_cols=23 Identities=48% Similarity=0.784 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 25677877664011001033346
Q 537021.9.peg.6 16 NIKKLLIVSLLSSTAIISGCDSH 38 (44)
Q Consensus 16 nikkllivsllsstaiisgcdsh 38 (44)
.+||++++.+++++-.+|||-.-
T Consensus 2 ~~kk~~~~~~~~~~l~lsGC~a~ 24 (243)
T PRK13731 2 KTKKLMMVALVSSTLALSGCGAM 24 (243)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 33775799999999997156876
No 4
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=41.67 E-value=8.3 Score=20.32 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHCCCEEECCCCCCCCC
Q ss_conf 56778776640110010333467887
Q 537021.9.peg.6 17 IKKLLIVSLLSSTAIISGCDSHSGDG 42 (44)
Q Consensus 17 ikkllivsllsstaiisgcdshsgdg 42 (44)
.||-|+..++.++-|.|||-+|-+|-
T Consensus 1 Mkktl~i~~ta~vliLs~C~~~~dd~ 26 (382)
T COG4851 1 MKKTLGIAATASVLILSGCFPFVDDT 26 (382)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 94015589999999986116766873
No 5
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=32.80 E-value=21 Score=18.37 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 025677877664011001033346
Q 537021.9.peg.6 15 VNIKKLLIVSLLSSTAIISGCDSH 38 (44)
Q Consensus 15 vnikkllivsllsstaiisgcdsh 38 (44)
--+|++++..+|..+...+||-..
T Consensus 4 ~~~~r~~~~~~l~~~~lLagC~~~ 27 (488)
T PRK09915 4 RQLSRLLLCSILGSTTLISGCALV 27 (488)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 577699999999999997526689
No 6
>pfam06788 UPF0257 Uncharacterized protein family (UPF0257).
Probab=22.06 E-value=41 Score=17.04 Aligned_cols=22 Identities=41% Similarity=0.866 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 567787766401100103334678
Q 537021.9.peg.6 17 IKKLLIVSLLSSTAIISGCDSHSG 40 (44)
Q Consensus 17 ikkllivsllsstaiisgcdshsg 40 (44)
.||.+.+.+|. .+++|||..+.
T Consensus 1 ~k~~~~~~~la--~~LsgCD~~~a 22 (236)
T pfam06788 1 VKKYLLVMLLA--LVLTGCDNPDA 22 (236)
T ss_pred CCCHHHHHHHH--HHEECCCCCCC
T ss_conf 94013688787--72125578887
No 7
>PRK02463 OxaA-like protein precursor; Provisional
Probab=20.44 E-value=46 Score=16.79 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=16.9
Q ss_pred CHHHHHHHHH-HHCCCEEECCCCCCCC
Q ss_conf 2567787766-4011001033346788
Q 537021.9.peg.6 16 NIKKLLIVSL-LSSTAIISGCDSHSGD 41 (44)
Q Consensus 16 nikkllivsl-lsstaiisgcdshsgd 41 (44)
+.|+++...+ ++...+.|||...+.+
T Consensus 4 ~~k~~~~~~~~~~~~l~LsgC~~~~~~ 30 (307)
T PRK02463 4 TLKRILFSGLALSMLLTLTGCVGRDKH 30 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 899999999999999999634689999
No 8
>PRK11627 hypothetical protein; Provisional
Probab=20.25 E-value=33 Score=17.48 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 56778776640110010333467
Q 537021.9.peg.6 17 IKKLLIVSLLSSTAIISGCDSHS 39 (44)
Q Consensus 17 ikkllivsllsstaiisgcdshs 39 (44)
+||+++. |.++...+||-+.+
T Consensus 2 mkk~~~~--l~a~~lL~gCas~p 22 (192)
T PRK11627 2 LKKILFP--LVALFMLAGCATPP 22 (192)
T ss_pred HHHHHHH--HHHHHHHHHHCCCC
T ss_conf 2879999--99999998606997
No 9
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=19.85 E-value=32 Score=17.56 Aligned_cols=19 Identities=42% Similarity=0.796 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCEEECCCC
Q ss_conf 67787766401100103334
Q 537021.9.peg.6 18 KKLLIVSLLSSTAIISGCDS 37 (44)
Q Consensus 18 kkllivsllsstaiisgcds 37 (44)
|| +|.++|-++-+++||-.
T Consensus 2 kK-~i~~il~~~llL~GCs~ 20 (304)
T pfam07901 2 RK-LIKLILIATLLLSGCST 20 (304)
T ss_pred CH-HHHHHHHHHHHHCCCCC
T ss_conf 01-89999999999713344
No 10
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=17.11 E-value=56 Score=16.40 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCEEECCCC
Q ss_conf 567787766401100103334
Q 537021.9.peg.6 17 IKKLLIVSLLSSTAIISGCDS 37 (44)
Q Consensus 17 ikkllivsllsstaiisgcds 37 (44)
.||+++.+++.|.-...||++
T Consensus 1 MKk~~l~~~iasal~LagCGg 21 (792)
T TIGR03502 1 MKKLLLSLAIASALGLAGCGD 21 (792)
T ss_pred CCHHHHHHHHHHHHHHHCCCC
T ss_conf 933789999999875004578
Done!