Query         537021.9.peg.60_1
Match_columns 44
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Sun May 22 23:56:36 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_60.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2f2f_C CDT C, cytolethal diste  45.8     3.5 0.00015   21.1   0.0   24   17-43      1-24  (186)
  2 2esy_A LUNG surfactant protein  21.7      21 0.00087   17.4   0.6   15   12-26     17-31  (32)
  3 1spf_A Pulmonary surfactant-as  21.2      24   0.001   17.1   0.8   13   13-25      6-18  (35)
  4 3kdf_D Replication protein A 3   9.2      88  0.0037   14.4   1.0   13   10-22      4-16  (132)
  5 1ny8_A Protein YRBA; structure   8.8 1.1E+02  0.0045   14.0   1.3   27   12-38      6-32  (97)
  6 1emx_A HPTX2, heteropodatoxin    5.5 1.2E+02   0.005   13.8   0.2   11   30-40      5-15  (30)
  7 1fft_B Ubiquinol oxidase; elec   4.6 1.3E+02  0.0056   13.6   0.0   21   17-37      7-27  (315)
  8 2pi2_A Replication protein A 3   4.5 2.3E+02  0.0096   12.5   1.1   14   10-23     44-57  (270)
  9 3fau_A NEDD4-binding protein 2   4.0 1.9E+02  0.0081   12.8   0.4   16   28-43     36-51  (82)
 10 3gbw_A E3 ubiquitin-protein li   3.8 1.9E+02  0.0081   12.8   0.3   15   28-42    107-121 (164)

No 1  
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1
Probab=45.82  E-value=3.5  Score=21.06  Aligned_cols=24  Identities=38%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf             567787766401100103334678877
Q 537021.9.peg.6   17 IKKLLIVSLLSSTAIISGCDSHSGDGV   43 (44)
Q Consensus        17 ikkllivsllsstaiisgcdshsgdgv   43 (44)
                      .||.||+-+++   +|.+|+||.+.+.
T Consensus         1 mkK~~i~f~~~---l~~~~~s~~~~~~   24 (186)
T 2f2f_C            1 MKKYLLSFLLS---MILTLTSHAESNP   24 (186)
T ss_dssp             ---------------------------
T ss_pred             CCHHHHHHHHH---HHHHCCCCCCCCC
T ss_conf             93248999999---9975114554688


No 2  
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=21.71  E-value=21  Score=17.41  Aligned_cols=15  Identities=53%  Similarity=0.946  Sum_probs=12.2

Q ss_pred             EEECCHHHHHHHHHH
Q ss_conf             100025677877664
Q 537021.9.peg.6   12 IIPVNIKKLLIVSLL   26 (44)
Q Consensus        12 iipvnikkllivsll   26 (44)
                      -.|++.|.|||.-||
T Consensus        17 ccP~~LKRllillll   31 (32)
T 2esy_A           17 FFPVHLKRLLILLLL   31 (32)
T ss_dssp             STHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHC
T ss_conf             255069999999960


No 3  
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=21.15  E-value=24  Score=17.12  Aligned_cols=13  Identities=54%  Similarity=0.966  Sum_probs=10.3

Q ss_pred             EECCHHHHHHHHH
Q ss_conf             0002567787766
Q 537021.9.peg.6   13 IPVNIKKLLIVSL   25 (44)
Q Consensus        13 ipvnikkllivsl   25 (44)
                      -|||.|.||.|-.
T Consensus         6 cpvnlkrllvvvv   18 (35)
T 1spf_A            6 CPVNLKRLLVVVV   18 (35)
T ss_dssp             SCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             6306999987620


No 4  
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B
Probab=9.22  E-value=88  Score=14.43  Aligned_cols=13  Identities=38%  Similarity=0.751  Sum_probs=10.1

Q ss_pred             CCEEECCHHHHHH
Q ss_conf             1110002567787
Q 537021.9.peg.6   10 ERIIPVNIKKLLI   22 (44)
Q Consensus        10 eriipvnikklli   22 (44)
                      +.++||+||.++-
T Consensus         4 q~i~PvtI~ql~~   16 (132)
T 3kdf_D            4 QHIVPCTISQLLS   16 (132)
T ss_dssp             -CCEECCHHHHHT
T ss_pred             CCEEEEEHHHHHC
T ss_conf             6227069999741


No 5  
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=8.78  E-value=1.1e+02  Score=14.04  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEECCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf             100025677877664011001033346
Q 537021.9.peg.6   12 IIPVNIKKLLIVSLLSSTAIISGCDSH   38 (44)
Q Consensus        12 iipvnikkllivsllsstaiisgcdsh   38 (44)
                      +.+-.|+++|.-.+-.+..-+.||++|
T Consensus         6 M~~~eI~~~L~~~l~~~~v~V~g~gsH   32 (97)
T 1ny8_A            6 MENNEIQSVLMNALSLQEVHVSGDGSH   32 (97)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEEESSSE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf             789999999995399718999689838


No 6  
>1emx_A HPTX2, heteropodatoxin 2; NMR {Heteropoda venatoria} SCOP: g.3.6.2
Probab=5.55  E-value=1.2e+02  Score=13.80  Aligned_cols=11  Identities=36%  Similarity=0.978  Sum_probs=7.8

Q ss_pred             CEEECCCCCCC
Q ss_conf             00103334678
Q 537021.9.peg.6   30 AIISGCDSHSG   40 (44)
Q Consensus        30 aiisgcdshsg   40 (44)
                      ...||||.|..
T Consensus         5 ~lfsgc~t~ad   15 (30)
T 1emx_A            5 KLFSGCDTNAD   15 (30)
T ss_dssp             CTTCTTCSTTC
T ss_pred             CCCCCCCCCHH
T ss_conf             22237778632


No 7  
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=4.63  E-value=1.3e+02  Score=13.56  Aligned_cols=21  Identities=43%  Similarity=0.678  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHCCCEEECCCC
Q ss_conf             567787766401100103334
Q 537021.9.peg.6   17 IKKLLIVSLLSSTAIISGCDS   37 (44)
Q Consensus        17 ikkllivsllsstaiisgcds   37 (44)
                      .|-+...+++.++..++||+.
T Consensus         7 ~r~l~~l~ll~~~~lLsGC~~   27 (315)
T 1fft_B            7 NKSLGWLSLFAGTVLLSGCNS   27 (315)
T ss_dssp             --------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHCCC
T ss_conf             789999999999999965765


No 8  
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=4.46  E-value=2.3e+02  Score=12.46  Aligned_cols=14  Identities=36%  Similarity=0.700  Sum_probs=10.1

Q ss_pred             CCEEECCHHHHHHH
Q ss_conf             11100025677877
Q 537021.9.peg.6   10 ERIIPVNIKKLLIV   23 (44)
Q Consensus        10 eriipvnikklliv   23 (44)
                      +.++||.||.++--
T Consensus        44 ~~l~PvtIkqi~~a   57 (270)
T 2pi2_A           44 QHIVPCTISQLLSA   57 (270)
T ss_dssp             CCCEECCHHHHHHC
T ss_pred             CCEEEEEHHHHHHC
T ss_conf             85631789998617


No 9  
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens}
Probab=4.04  E-value=1.9e+02  Score=12.81  Aligned_cols=16  Identities=38%  Similarity=0.609  Sum_probs=12.4

Q ss_pred             CCCEEECCCCCCCCCC
Q ss_conf             1100103334678877
Q 537021.9.peg.6   28 STAIISGCDSHSGDGV   43 (44)
Q Consensus        28 staiisgcdshsgdgv   43 (44)
                      .--||.|.-.||.+|.
T Consensus        36 ~l~IItG~G~hS~~g~   51 (82)
T 3fau_A           36 YLSVITGRGNHSQGGV   51 (82)
T ss_dssp             EEEEECCC--------
T ss_pred             EEEEEECCCCCCCCCC
T ss_conf             7999969776899996


No 10 
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus}
Probab=3.78  E-value=1.9e+02  Score=12.81  Aligned_cols=15  Identities=33%  Similarity=0.341  Sum_probs=11.0

Q ss_pred             CCCEEECCCCCCCCC
Q ss_conf             110010333467887
Q 537021.9.peg.6   28 STAIISGCDSHSGDG   42 (44)
Q Consensus        28 staiisgcdshsgdg   42 (44)
                      -.|.+.|++|+.|++
T Consensus       107 ~~a~~~G~~S~~G~~  121 (164)
T 3gbw_A          107 AWARVSGPSSDCGSH  121 (164)
T ss_dssp             EEEEEESSCBCCEEE
T ss_pred             EEEEECCCCCCCCCC
T ss_conf             999968996556679


Done!