RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.60_1 (44 letters) >d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]} Length = 204 Score = 23.3 bits (50), Expect = 6.5 Identities = 6/23 (26%), Positives = 10/23 (43%) Query: 5 VSVIDERIIPVNIKKLLIVSLLS 27 + + +I + LIV L S Sbjct: 181 KRKPERSDLSADINEHLIVELYS 203 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.137 0.378 Gapped Lambda K H 0.267 0.0605 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 154,329 Number of extensions: 4130 Number of successful extensions: 7 Number of sequences better than 10.0: 1 Number of HSP's gapped: 7 Number of HSP's successfully gapped: 2 Length of query: 44 Length of database: 2,407,596 Length adjustment: 16 Effective length of query: 28 Effective length of database: 2,187,916 Effective search space: 61261648 Effective search space used: 61261648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.2 bits)