BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.60_1
         (44 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.60_1 
          Length = 44

 Score = 86.7 bits (213), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  LYQAVSVIDERIIPVNIKKLLIVSLLSSTAIISGCDSHSGDGVH 44
          LYQAVSVIDERIIPVNIKKLLIVSLLSSTAIISGCDSHSGDGVH
Sbjct: 1  LYQAVSVIDERIIPVNIKKLLIVSLLSSTAIISGCDSHSGDGVH 44


>gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score = 28.5 bits (62), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 18/21 (85%)

Query: 15 VNIKKLLIVSLLSSTAIISGC 35
          ++IK L++ SL+SST I+SGC
Sbjct: 1  MDIKGLIVASLISSTVIMSGC 21


>gi|254780886|ref|YP_003065299.1| hypothetical protein CLIBASIA_03915 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 41

 Score = 26.6 bits (57), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 15 VNIKKLLIVSLLSSTAIISGCDSHSGDGVH 44
          +N K L++ S++SSTAI+S C S+S +  H
Sbjct: 1  MNAKGLIVASIISSTAIMSSC-SYSWNLKH 29


>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score = 21.6 bits (44), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 10  ERIIPVNIKKLLIVSLLSSTAIISGCDSHSGDG 42
           +R+I   ++ ++ +S L S  II  CD    DG
Sbjct: 91  QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123


>537021.9.peg.542_1 
          Length = 54

 Score = 21.2 bits (43), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 3  QAVSVIDERIIPVNIKKLLIVSLLSST-AIISGCD 36
           AV  ID  +IP     LL++SL  S   ++ G D
Sbjct: 8  YAVRGIDIFLIPAMFSSLLLISLFDSYECVMMGFD 42


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,392
Number of Sequences: 1233
Number of extensions: 647
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 44
length of database: 328,796
effective HSP length: 17
effective length of query: 27
effective length of database: 307,835
effective search space:  8311545
effective search space used:  8311545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)