Query 537021.9.peg.603_1
Match_columns 37
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 23:54:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_603.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1om4_A Nitric-oxide synthase, 9.1 1.6E+02 0.0046 14.5 1.5 14 12-25 4-17 (46)
2 >2hd0_A Protease NS2-3 (P23); 8.9 1.2E+02 0.0035 15.0 0.8 12 3-14 4-15 (56)
3 >2jis_A Cysteine sulfinic acid 8.0 18 0.00052 19.1 -3.7 31 1-31 25-59 (102)
4 >1prx_A HORF6; peroxiredoxin, 7.4 1.5E+02 0.0045 14.5 0.8 11 17-27 2-12 (46)
5 >3h90_A Ferrous-iron efflux pu 6.5 2.6E+02 0.0078 13.3 2.0 18 10-27 20-37 (81)
6 >1m1h_A Transcription antiterm 5.8 2.4E+02 0.0071 13.5 1.2 12 21-32 11-22 (83)
7 >3byp_A CZRB protein; membrane 5.6 3E+02 0.0088 13.1 2.0 21 7-27 25-45 (94)
8 >1grj_A GREA protein; transcri 5.2 1E+02 0.0031 15.3 -1.0 28 2-32 37-64 (75)
9 >2zzt_A Putative uncharacteriz 5.2 3.2E+02 0.0094 12.9 1.6 18 10-27 26-43 (107)
10 >1oo0_A MAGO nashi protein; RN 5.1 2.6E+02 0.0078 13.3 1.0 10 22-31 4-13 (105)
No 1
>>1om4_A Nitric-oxide synthase, brain; oxidoreductase, heme-enzyme; HET: HEM H4B ARG; 1.75A {Rattus norvegicus} (A:1-46)
Probab=9.15 E-value=1.6e+02 Score=14.46 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=11.8
Q ss_pred EEEEECCCCCCEEE
Q ss_conf 55541332132566
Q 537021.9.peg.6 12 IIKLRGWQYGEEFM 25 (37)
Q Consensus 12 iiklrgwqygeefm 25 (37)
-+||+.|..|.++-
T Consensus 4 ~~rlKNw~~g~~~~ 17 (46)
T 1om4_A 4 FLKVKNWETDVVLT 17 (46)
T ss_dssp CEEEEBTTTCCEEE
T ss_pred CEEEEECCCCCEEE
T ss_conf 54421114686563
No 2
>>2hd0_A Protease NS2-3 (P23); cysteine protease, dimer, composite active site, hydrolase; HET: DMU BOG; 2.28A {Hepatitis c virus} (A:73-128)
Probab=8.94 E-value=1.2e+02 Score=15.04 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=9.8
Q ss_pred CCCCCCCEEEEE
Q ss_conf 410532034555
Q 537021.9.peg.6 3 PIFSPVEAAIIK 14 (37)
Q Consensus 3 pifspveaaiik 14 (37)
-+|||.|..||.
T Consensus 4 Vvfs~me~kiIt 15 (56)
T 2hd0_A 4 VVFSRMETKLIT 15 (56)
T ss_dssp EESSCCCCEEEC
T ss_pred EECCCCEEEEEE
T ss_conf 424724257886
No 3
>>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} (A:118-163,A:364-419)
Probab=8.03 E-value=18 Score=19.13 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=22.4
Q ss_pred CCCCCCCCCEEEEE----EECCCCCCEEEEEEECC
Q ss_conf 96410532034555----41332132566664227
Q 537021.9.peg.6 1 MIPIFSPVEAAIIK----LRGWQYGEEFMLRTYSG 31 (37)
Q Consensus 1 mipifspveaaiik----lrgwqygeefmlrtysg 31 (37)
|-|+||-+|..+++ +-||.|.+++-+..+|=
T Consensus 25 ~aPv~~~~E~~~~~~~~~~~g~l~D~~~D~~d~si 59 (102)
T 2jis_A 25 IAPVFVLMEEEVLRKLRALVGWFYDVALDTGDKVV 59 (102)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSCGGGCCGGGCS
T ss_pred HCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 37589999999999999980996666657211344
No 4
>>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} (A:179-224)
Probab=7.43 E-value=1.5e+02 Score=14.52 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.6
Q ss_pred CCCCCCEEEEE
Q ss_conf 33213256666
Q 537021.9.peg.6 17 GWQYGEEFMLR 27 (37)
Q Consensus 17 gwqygeefmlr 27 (37)
.|+.|++.|..
T Consensus 2 nW~~GddviV~ 12 (46)
T 1prx_A 2 DWKDGDSVMVL 12 (46)
T ss_dssp TCCTTSCEEEC
T ss_pred CCCCCCCEEEC
T ss_conf 98879823628
No 5
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:203-283)
Probab=6.48 E-value=2.6e+02 Score=13.33 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.1
Q ss_pred EEEEEEECCCCCCEEEEE
Q ss_conf 345554133213256666
Q 537021.9.peg.6 10 AAIIKLRGWQYGEEFMLR 27 (37)
Q Consensus 10 aaiiklrgwqygeefmlr 27 (37)
..+-.||.|++|....+-
T Consensus 20 ~~vh~l~~r~~G~~~~v~ 37 (81)
T 3h90_A 20 SGAHDLRTRQSGPTRFIQ 37 (81)
T ss_dssp SEEEEEEEEEETTEEEEE
T ss_pred CCEEEEEEEEECCCEEEE
T ss_conf 313479999958979999
No 6
>>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} (A:1-49,A:135-168)
Probab=5.85 E-value=2.4e+02 Score=13.53 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.9
Q ss_pred CCEEEEEEECCC
Q ss_conf 325666642276
Q 537021.9.peg.6 21 GEEFMLRTYSGE 32 (37)
Q Consensus 21 geefmlrtysge 32 (37)
.+=+.++||||-
T Consensus 11 ~kWYvi~t~SG~ 22 (83)
T 1m1h_A 11 KKWYALQVEPGK 22 (83)
T ss_dssp CEEEEEEECTTC
T ss_pred CCEEEEEEECCC
T ss_conf 866999825695
No 7
>>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} (A:)
Probab=5.61 E-value=3e+02 Score=13.07 Aligned_cols=21 Identities=14% Similarity=0.155 Sum_probs=15.7
Q ss_pred CCCEEEEEEECCCCCCEEEEE
Q ss_conf 320345554133213256666
Q 537021.9.peg.6 7 PVEAAIIKLRGWQYGEEFMLR 27 (37)
Q Consensus 7 pveaaiiklrgwqygeefmlr 27 (37)
|--..+-.||.|++|....+-
T Consensus 25 ~~V~~vh~lr~r~~G~~~~v~ 45 (94)
T 3byp_A 25 GRALEVHDLKTRRAGPRSFLE 45 (94)
T ss_dssp TTCSEEEEEEEEEETTEEEEE
T ss_pred CCEEEEEEEEEEEECCEEEEE
T ss_conf 886688888889989979999
No 8
>>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} (A:84-158)
Probab=5.20 E-value=1e+02 Score=15.33 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=19.3
Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEEECCC
Q ss_conf 6410532034555413321325666642276
Q 537021.9.peg.6 2 IPIFSPVEAAIIKLRGWQYGEEFMLRTYSGE 32 (37)
Q Consensus 2 ipifspveaaiiklrgwqygeefmlrtysge 32 (37)
|.+.||+-.|++ |-+-|+++-+++-+|+
T Consensus 37 IS~~SPlG~ALl---G~~~Gd~v~~~~p~g~ 64 (75)
T 1grj_A 37 ISVNSPIARGLI---GKEEDDVVVIKTPGGE 64 (75)
T ss_dssp EESSSHHHHHHT---TCBTTCEECC------
T ss_pred ECCCCHHHHHHH---CCCCCCEEEEECCCCC
T ss_conf 046898999972---8999998999839986
No 9
>>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} (A:)
Probab=5.19 E-value=3.2e+02 Score=12.92 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=14.1
Q ss_pred EEEEEEECCCCCCEEEEE
Q ss_conf 345554133213256666
Q 537021.9.peg.6 10 AAIIKLRGWQYGEEFMLR 27 (37)
Q Consensus 10 aaiiklrgwqygeefmlr 27 (37)
..+-.+|.|++|....+-
T Consensus 26 ~~vh~lr~r~~G~~~~v~ 43 (107)
T 2zzt_A 26 HNPHRVRIRRVGTKYFIE 43 (107)
T ss_dssp EEEEEEEEECSCC-CEEE
T ss_pred EEECCCEEEEECCEEEEE
T ss_conf 754570347888959999
No 10
>>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} (A:1-105)
Probab=5.11 E-value=2.6e+02 Score=13.33 Aligned_cols=10 Identities=60% Similarity=1.109 Sum_probs=0.0
Q ss_pred CEEEEEEECC
Q ss_conf 2566664227
Q 537021.9.peg.6 22 EEFMLRTYSG 31 (37)
Q Consensus 22 eefmlrtysg 31 (37)
++|-||-|+|
T Consensus 4 ~~FYlRYYvG 13 (105)
T 1oo0_A 4 EDFYLRYYVG 13 (105)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEEEEEEC
T ss_conf 7468999815
Done!