Query 537021.9.peg.603_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:14:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_603.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ba3_A NIKA; dimer, bacterial 10.0 20 0.00085 18.1 -2.0 13 4-16 21-33 (51) 2 2hd0_A Protease NS2-3 (P23); c 8.1 95 0.004 14.8 0.8 11 4-14 77-87 (128) 3 1hzm_A Dual specificity protei 4.9 1.5E+02 0.0063 13.8 0.4 10 1-10 1-10 (154) 4 2k2o_A Myoferlin; muscular dys 4.0 1.6E+02 0.0068 13.6 0.0 10 16-25 74-83 (123) 5 2w56_A VC0508; unknown functio 3.5 2.9E+02 0.012 12.4 1.0 16 5-20 57-74 (147) 6 2pn0_A Prokaryotic transcripti 3.4 2.2E+02 0.0093 12.9 0.3 28 2-32 91-118 (141) 7 2ox7_A Hypothetical protein; s 3.4 2.5E+02 0.011 12.6 0.6 16 11-26 3-18 (155) 8 1oo0_A MAGO nashi protein; RNA 3.3 3.1E+02 0.013 12.2 1.0 11 22-32 4-14 (147) 9 1wib_A 60S ribosomal protein L 3.1 3.4E+02 0.014 12.0 1.5 16 3-18 9-24 (92) 10 2p84_A ORF041; structural geno 2.9 3E+02 0.013 12.3 0.6 8 1-18 3-10 (145) No 1 >2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64} Probab=10.03 E-value=20 Score=18.09 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=9.6 Q ss_pred CCCCCCEEEEEEE Q ss_conf 1053203455541 Q 537021.9.peg.6 4 IFSPVEAAIIKLR 16 (37) Q Consensus 4 ifspveaaiiklr 16 (37) -|||+|+.||+-. T Consensus 21 RFsp~E~E~v~~k 33 (51) T 2ba3_A 21 RFSPVEDETIRKK 33 (51) T ss_dssp EECHHHHHHHHHH T ss_pred ECCCHHHHHHHHH T ss_conf 4180168999986 No 2 >2hd0_A Protease NS2-3 (P23); cysteine protease, dimer, composite active site, hydrolase; HET: DMU BOG; 2.28A {Hepatitis c virus} Probab=8.13 E-value=95 Score=14.77 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=9.5 Q ss_pred CCCCCCEEEEE Q ss_conf 10532034555 Q 537021.9.peg.6 4 IFSPVEAAIIK 14 (37) Q Consensus 4 ifspveaaiik 14 (37) +|||.|..||. T Consensus 77 vfspme~kvIt 87 (128) T 2hd0_A 77 VFSRMETKLIT 87 (128) T ss_dssp ESSCCCCEEEC T ss_pred ECCCHHEEEEE T ss_conf 40500046666 No 3 >1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Probab=4.86 E-value=1.5e+02 Score=13.78 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=6.6 Q ss_pred CCCCCCCCCE Q ss_conf 9641053203 Q 537021.9.peg.6 1 MIPIFSPVEA 10 (37) Q Consensus 1 mipifspvea 10 (37) ||++|.||.. T Consensus 1 ~~~~~~p~~~ 10 (154) T 1hzm_A 1 MIDTLRPVPF 10 (154) T ss_dssp CCTTSCSSSS T ss_pred CCCCCCCCCC T ss_conf 9663668986 No 4 >2k2o_A Myoferlin; muscular dystrophy, DYSF, dysferlin, LIMB-girdle, alternative splicing, membrane, nucleus, phosphoprotein, polymorphism, transmembrane; NMR {Homo sapiens} Probab=4.02 E-value=1.6e+02 Score=13.61 Aligned_cols=10 Identities=40% Similarity=1.179 Sum_probs=7.2 Q ss_pred ECCCCCCEEE Q ss_conf 1332132566 Q 537021.9.peg.6 16 RGWQYGEEFM 25 (37) Q Consensus 16 rgwqygeefm 25 (37) -||+|+..|- T Consensus 74 ~GW~Y~~~f~ 83 (123) T 2k2o_A 74 KGWEYGITIP 83 (123) T ss_dssp TSCEEECCCS T ss_pred CCCEEEEECC T ss_conf 8853320215 No 5 >2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B Probab=3.53 E-value=2.9e+02 Score=12.35 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=11.1 Q ss_pred CCCCCEEEEEEEC--CCC Q ss_conf 0532034555413--321 Q 537021.9.peg.6 5 FSPVEAAIIKLRG--WQY 20 (37) Q Consensus 5 fspveaaiiklrg--wqy 20 (37) |.|||-.+.+... ||. T Consensus 57 fHPVEIrl~r~~~~~W~i 74 (147) T 2w56_A 57 FHPVEMAICQTSTGEWSI 74 (147) T ss_dssp SCCEEEEEEECTTSCEEE T ss_pred CCCEEEEEEECCCCCEEE T ss_conf 277899999847996999 No 6 >2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea} Probab=3.40 E-value=2.2e+02 Score=12.95 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=18.6 Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEEECCC Q ss_conf 6410532034555413321325666642276 Q 537021.9.peg.6 2 IPIFSPVEAAIIKLRGWQYGEEFMLRTYSGE 32 (37) Q Consensus 2 ipifspveaaiiklrgwqygeefmlrtysge 32 (37) |.+.||+-+|++ |-+-|+++-+.+-+|. T Consensus 91 IS~~SPlG~ALl---G~~~Gd~v~v~~P~G~ 118 (141) T 2pn0_A 91 ISILAPVGSALL---GLAQGDEIEWPKPGGG 118 (141) T ss_dssp EETTSTTHHHHT---TCBTTCEEEEECTTSS T ss_pred EECCCHHHHHHH---CCCCCCEEEEECCCCC T ss_conf 632799999972---8999999999879998 No 7 >2ox7_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK structural genomics research consortium; 1.78A {Enterococcus faecalis V583} SCOP: b.172.1.1 Probab=3.37 E-value=2.5e+02 Score=12.64 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=9.8 Q ss_pred EEEEEECCCCCCEEEE Q ss_conf 4555413321325666 Q 537021.9.peg.6 11 AIIKLRGWQYGEEFML 26 (37) Q Consensus 11 aiiklrgwqygeefml 26 (37) -|.|.|.|--...-|+ T Consensus 3 MipKFRaWdk~~k~m~ 18 (155) T 2ox7_A 3 LIPKFRAWDTYEKEML 18 (155) T ss_dssp CCCCEEEEETTTTEEE T ss_pred CCCEEEEEECCCCEEE T ss_conf 6647999987999998 No 8 >1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A Probab=3.33 E-value=3.1e+02 Score=12.19 Aligned_cols=11 Identities=55% Similarity=1.020 Sum_probs=6.0 Q ss_pred CEEEEEEECCC Q ss_conf 25666642276 Q 537021.9.peg.6 22 EEFMLRTYSGE 32 (37) Q Consensus 22 eefmlrtysge 32 (37) ++|-||-|+|. T Consensus 4 ~~FYlRYYvGH 14 (147) T 1oo0_A 4 EDFYLRYYVGH 14 (147) T ss_dssp CCEEEEEEEEE T ss_pred CCEEEEEEECC T ss_conf 63799998146 No 9 >1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1 Probab=3.13 E-value=3.4e+02 Score=12.02 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=11.6 Q ss_pred CCCCCCCEEEEEEECC Q ss_conf 4105320345554133 Q 537021.9.peg.6 3 PIFSPVEAAIIKLRGW 18 (37) Q Consensus 3 pifspveaaiiklrgw 18 (37) |-|.|-|..+||||-+ T Consensus 9 pK~dpn~v~~Ikl~v~ 24 (92) T 1wib_A 9 PKFDPNEVKVVYLRCT 24 (92) T ss_dssp CCCCSSSCEEEEEEEE T ss_pred CCCCCCCEEEEEEEEE T ss_conf 9889780799999984 No 10 >2p84_A ORF041; structural genomics, hypothetical protein, PSI, protein structure initiative, NEW YORK structural genomics research consortium; 1.80A {Staphylococcus phage 37} SCOP: b.172.1.1 Probab=2.90 E-value=3e+02 Score=12.26 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=0.0 Q ss_pred CCCCCCCCCEEEEEEECC Q ss_conf 964105320345554133 Q 537021.9.peg.6 1 MIPIFSPVEAAIIKLRGW 18 (37) Q Consensus 1 mipifspveaaiiklrgw 18 (37) ||| |.|.| T Consensus 3 MiP----------KFRaW 10 (145) T 2p84_A 3 LIP----------KFREF 10 (145) T ss_dssp CCC----------CEEEE T ss_pred CCC----------EEEEE T ss_conf 677----------78979 Done!