Query 537021.9.peg.603_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 23:21:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_603.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1tg7a3 b.18.1.27 (A:849-1011) 6.6 72 0.0052 14.2 0.8 13 10-22 78-90 (163) 2 d1sr9a3 d.270.1.1 (A:492-643) 5.6 37 0.0027 15.6 -1.1 29 7-37 43-71 (152) 3 d2f23a2 d.26.1.2 (A:78-156) Gr 4.4 64 0.0047 14.4 -0.5 28 2-32 42-69 (79) 4 d1grja2 d.26.1.2 (A:80-158) Gr 4.2 54 0.004 14.8 -1.0 28 2-32 41-68 (79) 5 d1rk8b_ d.232.1.1 (B:) Mago na 3.7 1.7E+02 0.013 12.3 1.3 11 22-32 1-11 (141) 6 d1zhva1 d.58.18.8 (A:2-61) Hyp 3.4 1.8E+02 0.013 12.2 1.1 22 14-35 23-44 (60) 7 d1icpa_ c.1.4.1 (A:) 12-oxophy 2.8 2.1E+02 0.015 11.9 0.8 14 2-15 5-18 (364) 8 d1bhua_ b.11.1.3 (A:) Streptom 2.2 2.3E+02 0.017 11.6 0.5 12 16-27 44-55 (102) 9 d1cf1a1 b.1.18.11 (A:10-182) A 2.1 2.7E+02 0.02 11.3 1.3 19 16-34 130-148 (173) 10 d1fwxa2 b.69.3.1 (A:8-451) Nit 2.0 1.8E+02 0.013 12.2 -0.4 17 2-23 39-55 (459) No 1 >d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Probab=6.64 E-value=72 Score=14.19 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=10.2 Q ss_pred EEEEEEECCCCCC Q ss_conf 3455541332132 Q 537021.9.peg.6 10 AAIIKLRGWQYGE 22 (37) Q Consensus 10 aaiiklrgwqyge 22 (37) -+.+-+.|||||. T Consensus 78 R~~lfVNG~q~G~ 90 (163) T d1tg7a3 78 RVQLYVNGYQYGK 90 (163) T ss_dssp EEEEEETTEEEEE T ss_pred EEEEEECCEEEEE T ss_conf 7899870302003 No 2 >d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=5.59 E-value=37 Score=15.61 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=18.9 Q ss_pred CCCEEEEEEECCCCCCEEEEEEECCCCCCCC Q ss_conf 3203455541332132566664227620269 Q 537021.9.peg.6 7 PVEAAIIKLRGWQYGEEFMLRTYSGESLSAG 37 (37) Q Consensus 7 pveaaiiklrgwqygeefmlrtysgeslsag 37 (37) ||+|.+--|+ +.|..|-|..|+-.+++.| T Consensus 43 PVdA~~~AL~--~~~~~~~l~dY~~hai~~G 71 (152) T d1sr9a3 43 PLAAFVHALA--DVGFDVAVLDYYEHAMSAG 71 (152) T ss_dssp HHHHHHHHHH--TTTCEEEEEEEEEEESSSS T ss_pred HHHHHHHHHH--HCCCCCEEEEEEEEEECCC T ss_conf 2899999999--7398714626889950488 No 3 >d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=4.41 E-value=64 Score=14.42 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=18.7 Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEEECCC Q ss_conf 6410532034555413321325666642276 Q 537021.9.peg.6 2 IPIFSPVEAAIIKLRGWQYGEEFMLRTYSGE 32 (37) Q Consensus 2 ipifspveaaiiklrgwqygeefmlrtysge 32 (37) |.+.||+-.|++ |-+-|+++.+.+-.|. T Consensus 42 IS~~SPlG~ALl---Gk~~Gd~v~v~~p~g~ 69 (79) T d2f23a2 42 ISDASPMGKALL---GHRVGDVLSLDTPKGK 69 (79) T ss_dssp EETTSHHHHHHT---TCCTTCEEEEEETTEE T ss_pred ECCCCHHHHHHH---CCCCCCEEEEECCCCC T ss_conf 436698899974---8999999999859987 No 4 >d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.23 E-value=54 Score=14.78 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=18.1 Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEEECCC Q ss_conf 6410532034555413321325666642276 Q 537021.9.peg.6 2 IPIFSPVEAAIIKLRGWQYGEEFMLRTYSGE 32 (37) Q Consensus 2 ipifspveaaiiklrgwqygeefmlrtysge 32 (37) |.+.||+-.|++ |-+-|+++-+.+-+|+ T Consensus 41 IS~~SPlG~ALl---G~~~Gd~v~v~~p~g~ 68 (79) T d1grja2 41 ISVNSPIARGLI---GKEEDDVVVIKTPGGE 68 (79) T ss_dssp EESSSHHHHHHT---TCBTTCEECC------ T ss_pred EEECCHHHHHHH---CCCCCCEEEEECCCCC T ss_conf 872798999973---9999999999969986 No 5 >d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=3.69 E-value=1.7e+02 Score=12.31 Aligned_cols=11 Identities=55% Similarity=1.020 Sum_probs=6.0 Q ss_pred CEEEEEEECCC Q ss_conf 25666642276 Q 537021.9.peg.6 22 EEFMLRTYSGE 32 (37) Q Consensus 22 eefmlrtysge 32 (37) |+|-||-|+|. T Consensus 1 ~~FYlRYYvGH 11 (141) T d1rk8b_ 1 EDFYLRYYVGH 11 (141) T ss_dssp CCEEEEEEE-- T ss_pred CCEEEEEEECC T ss_conf 96279997056 No 6 >d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} Probab=3.40 E-value=1.8e+02 Score=12.17 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=15.2 Q ss_pred EEECCCCCCEEEEEEECCCCCC Q ss_conf 5413321325666642276202 Q 537021.9.peg.6 14 KLRGWQYGEEFMLRTYSGESLS 35 (37) Q Consensus 14 klrgwqygeefmlrtysgesls 35 (37) .+-+|.++.+|.--|-.-+-|| T Consensus 23 ~iP~w~~~~~f~sItrT~dELS 44 (60) T d1zhva1 23 AIPAWADGGGFVSITRTDDELS 44 (60) T ss_dssp CCCTTTSSSSCCEEEECSSCEE T ss_pred CCCCCCCCCCEEEEEECCCCEE T ss_conf 7974104797799984488068 No 7 >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} Probab=2.77 E-value=2.1e+02 Score=11.93 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=8.0 Q ss_pred CCCCCCCCEEEEEE Q ss_conf 64105320345554 Q 537021.9.peg.6 2 IPIFSPVEAAIIKL 15 (37) Q Consensus 2 ipifspveaaiikl 15 (37) ||.|||+.-.-+.| T Consensus 5 ~pLFsP~~ig~~~L 18 (364) T d1icpa_ 5 IPLMSPCKMGKFEL 18 (364) T ss_dssp CGGGSCEEETTEEE T ss_pred CCCCCCCEECCEEE T ss_conf 88999724899996 No 8 >d1bhua_ b.11.1.3 (A:) Streptomyces metalloproteinase inhibitor, SMPI {Streptomyces nigrescens [TaxId: 1920]} Probab=2.20 E-value=2.3e+02 Score=11.64 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=5.7 Q ss_pred ECCCCCCEEEEE Q ss_conf 133213256666 Q 537021.9.peg.6 16 RGWQYGEEFMLR 27 (37) Q Consensus 16 rgwqygeefmlr 27 (37) |.+.-|..|.|| T Consensus 44 rsfangthftlr 55 (102) T d1bhua_ 44 RSFANGTHFTLR 55 (102) T ss_dssp CBEECSSCCEEE T ss_pred HHCCCCCEEEEE T ss_conf 200578358886 No 9 >d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]} Probab=2.09 E-value=2.7e+02 Score=11.31 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.2 Q ss_pred ECCCCCCEEEEEEECCCCC Q ss_conf 1332132566664227620 Q 537021.9.peg.6 16 RGWQYGEEFMLRTYSGESL 34 (37) Q Consensus 16 rgwqygeefmlrtysgesl 34 (37) .|-..|-+|-+++|.+|+. T Consensus 130 ~GkpcGVdyevK~f~ae~~ 148 (173) T d1cf1a1 130 VGKSCGVDFEIKAFATHST 148 (173) T ss_dssp CSCCEEEEEEEEEEEECHH T ss_pred CCCCCEEEEEEEEEEECCC T ss_conf 8996334689999882267 No 10 >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Probab=1.96 E-value=1.8e+02 Score=12.19 Aligned_cols=17 Identities=35% Similarity=0.876 Sum_probs=0.0 Q ss_pred CCCCCCCCEEEEEEECCCCCCE Q ss_conf 6410532034555413321325 Q 537021.9.peg.6 2 IPIFSPVEAAIIKLRGWQYGEE 23 (37) Q Consensus 2 ipifspveaaiiklrgwqygee 23 (37) ||.|+|--+ .||-|.+| T Consensus 39 ipvF~~~~~-----~G~G~~~e 55 (459) T d1fwxa2 39 VPVFNRCSA-----TGWGQTNE 55 (459) T ss_dssp EESSSCCTT-----TCTTTBHH T ss_pred EEEECCCCC-----CCCCCCHH T ss_conf 010357877-----45576446 Done!