Query 537021.9.peg.612_1
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Wed May 25 05:20:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07209 ribonucleotide-diphos 94.7 0.0065 1.7E-07 35.0 -0.2 19 35-53 364-382 (391)
2 PRK12759 bifunctional gluaredo 81.5 0.34 8.7E-06 26.8 -0.3 17 37-53 379-395 (410)
3 PTZ00211 ribonucleotide reduct 55.5 2.7 7E-05 22.5 -0.4 25 29-53 286-310 (330)
4 PRK13966 nrdF2 ribonucleotide- 53.9 4.4 0.00011 21.5 0.4 22 32-53 288-309 (324)
5 PRK13965 ribonucleotide-diphos 37.3 10 0.00026 19.8 0.1 16 38-53 307-322 (337)
6 PRK09614 nrdF ribonucleotide-d 22.2 27 0.00068 17.8 0.1 13 41-53 298-310 (325)
7 pfam05867 DUF851 Caenorhabditi 20.0 30 0.00077 17.5 0.0 11 24-34 14-24 (32)
8 PRK13967 nrdF1 ribonucleotide- 18.7 38 0.00096 17.0 0.3 18 36-53 288-307 (322)
9 KOG2814 consensus 17.0 45 0.0011 16.7 0.3 45 2-50 259-305 (345)
10 pfam09351 DUF1993 Domain of un 14.3 34 0.00088 17.2 -0.8 37 3-42 122-158 (162)
No 1
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=94.74 E-value=0.0065 Score=34.98 Aligned_cols=19 Identities=68% Similarity=1.055 Sum_probs=17.3
Q ss_pred HHCCHHHHCCCEECCCCCC
Q ss_conf 0023021024000001369
Q 537021.9.peg.6 35 SKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 35 skmdlkkennffetrttey 53 (53)
.-+|++++.||||+|.|||
T Consensus 364 e~idl~~~tNFFE~RVteY 382 (391)
T PRK07209 364 EMIDLKKEKNFFETRVIEY 382 (391)
T ss_pred HHHCCCCCCCCCCCCHHHH
T ss_conf 8627332135133208776
No 2
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.48 E-value=0.34 Score=26.78 Aligned_cols=17 Identities=47% Similarity=0.825 Sum_probs=14.8
Q ss_pred CCHHHHCCCEECCCCCC
Q ss_conf 23021024000001369
Q 537021.9.peg.6 37 MDLKKENNFFETRTTEY 53 (53)
Q Consensus 37 mdlkkennffetrttey 53 (53)
++..+..||||+|.+||
T Consensus 379 l~~~~ktNFFE~RVtEY 395 (410)
T PRK12759 379 LNGADHTNFFENRVTEY 395 (410)
T ss_pred HCCCCCCCCCCCCHHHH
T ss_conf 76755577567768877
No 3
>PTZ00211 ribonucleotide reductase small subunit; Provisional
Probab=55.55 E-value=2.7 Score=22.47 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=16.9
Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC
Q ss_conf 0021110023021024000001369
Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53)
|.+-.-..+++.+..||||+|.|+|
T Consensus 286 nP~~w~~~~~~~~ktnFFE~r~t~Y 310 (330)
T PTZ00211 286 NPFDWMEMISLQGKTNFFEKKVGEY 310 (330)
T ss_pred CCCHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 9845899854688888766778888
No 4
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=53.91 E-value=4.4 Score=21.49 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=15.6
Q ss_pred HHHHHCCHHHHCCCEECCCCCC
Q ss_conf 1110023021024000001369
Q 537021.9.peg.6 32 FHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 32 fhkskmdlkkennffetrttey 53 (53)
+-....+..+..||||+|.|+|
T Consensus 288 ~~~~~~~~~~~~nFFE~r~t~Y 309 (324)
T PRK13966 288 LSALSPNADENHDFFSGSGSSY 309 (324)
T ss_pred HHHHHHCCCCCCCCCCCCHHHH
T ss_conf 9986225675378678870021
No 5
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=37.30 E-value=10 Score=19.78 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=11.6
Q ss_pred CHHHHCCCEECCCCCC
Q ss_conf 3021024000001369
Q 537021.9.peg.6 38 DLKKENNFFETRTTEY 53 (53)
Q Consensus 38 dlkkennffetrttey 53 (53)
+.++..||||+|.|+|
T Consensus 307 ~~~~~~dFFE~r~t~Y 322 (337)
T PRK13965 307 RADENHDFFSGNGSSY 322 (337)
T ss_pred CCCCCCCCCCCCCCHH
T ss_conf 7886778547772100
No 6
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=22.16 E-value=27 Score=17.77 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=10.9
Q ss_pred HHCCCEECCCCCC
Q ss_conf 1024000001369
Q 537021.9.peg.6 41 KENNFFETRTTEY 53 (53)
Q Consensus 41 kennffetrttey 53 (53)
+..||||+|.++|
T Consensus 298 ~~tnFFE~r~t~Y 310 (325)
T PRK09614 298 ENHDFFEGKGTSY 310 (325)
T ss_pred CCCCCCCCCHHHH
T ss_conf 0458987871132
No 7
>pfam05867 DUF851 Caenorhabditis elegans repeat of unknown function (DUF851). This family consists of several repeated 32 residue sequences which seem only to be found in the Caenorhabditis elegans.
Probab=19.98 E-value=30 Score=17.49 Aligned_cols=11 Identities=55% Similarity=0.458 Sum_probs=6.6
Q ss_pred EEHHCCHHHHH
Q ss_conf 10010002111
Q 537021.9.peg.6 24 KTIMSNSIFHK 34 (53)
Q Consensus 24 ktimsnsifhk 34 (53)
---||||||.-
T Consensus 14 flkmsnsifdl 24 (32)
T pfam05867 14 FLKMSNSIFDL 24 (32)
T ss_pred EEECCCCCCCC
T ss_conf 40106751167
No 8
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=18.70 E-value=38 Score=17.05 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=12.4
Q ss_pred HCCHHH--HCCCEECCCCCC
Q ss_conf 023021--024000001369
Q 537021.9.peg.6 36 KMDLKK--ENNFFETRTTEY 53 (53)
Q Consensus 36 kmdlkk--ennffetrttey 53 (53)
-+++.+ ..||||.|.|+|
T Consensus 288 ~~~~~~~~~~dFFe~r~t~Y 307 (322)
T PRK13967 288 ALDPGAGENHDFFSGSGSSY 307 (322)
T ss_pred HHCCCCCCCCCCCCCCCCCC
T ss_conf 75768763268557886400
No 9
>KOG2814 consensus
Probab=16.95 E-value=45 Score=16.69 Aligned_cols=45 Identities=38% Similarity=0.441 Sum_probs=31.9
Q ss_pred CCHHHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHH--CCHHHHCCCEECCC
Q ss_conf 63015565411379845777411001000211100--23021024000001
Q 537021.9.peg.6 2 DDFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSK--MDLKKENNFFETRT 50 (53)
Q Consensus 2 ddfhlsdliheesspgfyfhyqktimsnsifhksk--mdlkkennffetrt 50 (53)
+-|-.+++|+.+++++-+ | -|. +|+++.|-. -+++|+-++|..|.
T Consensus 259 ~~f~~~~li~k~~~~~kL-H--~Tv-mNsryrk~~~~~g~~K~~~~Fdar~ 305 (345)
T KOG2814 259 ERFVASGLIKKESSSLKL-H--CTV-MNSRYRKNGGEPGLVKESESFDARE 305 (345)
T ss_pred HHHHHHCCHHCCCCCCEE-E--EEE-EHHHHHHCCCCCCHHHHHHHCCHHH
T ss_conf 999871420025655079-9--997-3344542578741356766323799
No 10
>pfam09351 DUF1993 Domain of unknown function (DUF1993). This family of proteins are functionally uncharacterized.
Probab=14.32 E-value=34 Score=17.23 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=24.7
Q ss_pred CHHHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHHCCHHHH
Q ss_conf 3015565411379845777411001000211100230210
Q 537021.9.peg.6 3 DFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKE 42 (53)
Q Consensus 3 dfhlsdliheesspgfyfhyqktimsnsifhkskmdlkke 42 (53)
+|.-.+.+..=+-|.||||.. |.-+|..+..+.|-|-
T Consensus 122 ~~tg~~yl~~falPNfyFH~t---taY~ILR~~GV~lGK~ 158 (162)
T pfam09351 122 DFTGEAYLLSFALPNFYFHVT---TAYAILRHNGVELGKR 158 (162)
T ss_pred EECHHHHHHHHCCCHHHHHHH---HHHHHHHHCCCCCCCC
T ss_conf 610999999801534898899---9999999759987766
Done!