Query 537021.9.peg.612_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 23:52:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ee4_A Probable ribonucleosid 56.8 2.6 7.8E-05 22.2 0.0 19 35-53 300-318 (323) 2 >1r2f_A Protein (ribonucleotid 52.3 3.8 0.00011 21.5 0.2 23 31-53 154-176 (191) 3 >1h0o_A Ribonucleoside-diphosp 46.0 5.7 0.00017 20.6 0.3 25 29-53 128-152 (172) 4 >1syy_A Ribonucleoside-diphosp 44.2 5.5 0.00016 20.7 0.0 18 36-53 321-338 (346) 5 >3dhz_A Ribonucleotide reducta 41.0 7 0.00021 20.2 0.1 23 31-53 154-176 (191) 6 >2p1i_A Ribonucleotide reducta 38.6 7.1 0.00021 20.2 -0.1 25 29-53 144-168 (188) 7 >1jk0_B RNR Y4, ribonucleoside 35.3 9.2 0.00027 19.7 0.0 25 29-53 153-177 (199) 8 >1jk0_A RNR Y2, ribonucleoside 25.7 20 0.0006 18.0 0.4 25 29-53 248-272 (295) 9 >2rcc_A Ribonucleoside-diphosp 17.1 33 0.00097 17.0 0.0 14 40-53 172-185 (197) 10 >2qvw_A GLP_546_48378_50642; d 10.0 83 0.0024 15.1 0.4 11 15-25 1-11 (64) No 1 >>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:) Probab=56.78 E-value=2.6 Score=22.24 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=16.1 Q ss_pred HHCCHHHHCCCEECCCCCC Q ss_conf 0023021024000001369 Q 537021.9.peg.6 35 SKMDLKKENNFFETRTTEY 53 (53) Q Consensus 35 skmdlkkennffetrttey 53 (53) .-+++.+..||||+|.|+| T Consensus 300 ~~~~~~~~~nFFe~~~~~Y 318 (323) T 3ee4_A 300 DYSPAQLEDTFADEDRRTL 318 (323) T ss_dssp ------------------- T ss_pred CCCHHHHHHHHHHHHHHHH T ss_conf 6897999999889899998 No 2 >>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319) Probab=52.28 E-value=3.8 Score=21.50 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=18.0 Q ss_pred HHHHHHCCHHHHCCCEECCCCCC Q ss_conf 21110023021024000001369 Q 537021.9.peg.6 31 IFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 31 ifhkskmdlkkennffetrttey 53 (53) ++-...++..+..||||+|.|+| T Consensus 154 ~~~~~~~~~~~~~nFFe~r~t~Y 176 (191) T 1r2f_A 154 ILAALSPNADENHDFFSGSGSSY 176 (191) T ss_dssp HHHHHCC---------------- T ss_pred HHHHHHHCCCCCCCCCCCCHHHH T ss_conf 89986514574588877875541 No 3 >>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:219-390) Probab=45.96 E-value=5.7 Score=20.65 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=19.1 Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC Q ss_conf 0021110023021024000001369 Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53) |.+-.-..+...+..||||+|.++| T Consensus 128 nP~~~~~~~~~~~~~nFFe~~~t~Y 152 (172) T 1h0o_A 128 NPFDFMENISLEGKTNFFEKRVGEY 152 (172) T ss_dssp CSCGGGC------------------ T ss_pred CCHHHHHHCCCCCCCCCCCCCHHHH T ss_conf 9857898612567757765657866 No 4 >>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:) Probab=44.23 E-value=5.5 Score=20.73 Aligned_cols=18 Identities=67% Similarity=1.093 Sum_probs=15.7 Q ss_pred HCCHHHHCCCEECCCCCC Q ss_conf 023021024000001369 Q 537021.9.peg.6 36 KMDLKKENNFFETRTTEY 53 (53) Q Consensus 36 kmdlkkennffetrttey 53 (53) -++..+..||||+|.|+| T Consensus 321 ~~~~~~~~nfFe~~~~~Y 338 (346) T 1syy_A 321 TIDLNKEKNFFETRVIEY 338 (346) T ss_dssp ------------------ T ss_pred HHCCCCCCCCCCCCHHHC T ss_conf 738677757788973313 No 5 >>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329) Probab=41.00 E-value=7 Score=20.21 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=17.0 Q ss_pred HHHHHHCCHHHHCCCEECCCCCC Q ss_conf 21110023021024000001369 Q 537021.9.peg.6 31 IFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 31 ifhkskmdlkkennffetrttey 53 (53) ++..-..+..+..||||+|.|+| T Consensus 154 ~~~~~~~~~~~~~nFFe~r~t~Y 176 (191) T 3dhz_A 154 ILSSLSPNADENHDFFSGSGSSY 176 (191) T ss_dssp HHHHHC----------------- T ss_pred HHHHHHHCCCCCCCCCCCCCCCC T ss_conf 89875302465678774774434 No 6 >>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:162-349) Probab=38.62 E-value=7.1 Score=20.18 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=17.8 Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC Q ss_conf 0021110023021024000001369 Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53) |.+-.-..+...+..||||+|.++| T Consensus 144 nP~~w~~~~~~~~~~nFFE~~~t~Y 168 (188) T 2p1i_A 144 NPFNWMDLISLQGKTNFFEKRVADY 168 (188) T ss_dssp CSCCC-------------------- T ss_pred CCCCCHHHCCCCCCCCCCCCCHHHH T ss_conf 9965055515674557887776563 No 7 >>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345) Probab=35.34 E-value=9.2 Score=19.66 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=17.3 Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC Q ss_conf 0021110023021024000001369 Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53) |.+-.-..+...+..||||+|.|+| T Consensus 153 nP~~~~~~~~~~~~~nFFe~~~t~Y 177 (199) T 1jk0_B 153 NPFEFMEDVATAGKTTFFEKKVSDY 177 (199) T ss_dssp ------------------------- T ss_pred CCHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 9757999873757765567765531 No 8 >>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419) Probab=25.73 E-value=20 Score=18.02 Aligned_cols=25 Identities=32% Similarity=0.608 Sum_probs=16.5 Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC Q ss_conf 0021110023021024000001369 Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53) |.+-.-..+...+..||||+|.++| T Consensus 248 NP~~wme~~~d~~ktNFFE~rvs~Y 272 (295) T 1jk0_A 248 NPFDFMENISLAGKTNFFEKRVSDY 272 (295) T ss_dssp CCCGGGGC----------------- T ss_pred CCCHHHHHHCCCCCCCCCCCCHHHH T ss_conf 9825888724578878767878878 No 9 >>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:150-346) Probab=17.08 E-value=33 Score=17.03 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=11.3 Q ss_pred HHHCCCEECCCCCC Q ss_conf 21024000001369 Q 537021.9.peg.6 40 KKENNFFETRTTEY 53 (53) Q Consensus 40 kkennffetrttey 53 (53) ++..||||+|.++| T Consensus 172 ~~~~nFFe~~~~~Y 185 (197) T 2rcc_A 172 SGKSDFFEQKSRQY 185 (197) T ss_dssp -------------- T ss_pred CCCCCCCCCCHHHH T ss_conf 65358888876875 No 10 >>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A (A:543-606) Probab=9.98 E-value=83 Score=15.11 Aligned_cols=11 Identities=55% Similarity=0.993 Sum_probs=8.2 Q ss_pred CCCEEEEEEEE Q ss_conf 98457774110 Q 537021.9.peg.6 15 SPGFYFHYQKT 25 (53) Q Consensus 15 spgfyfhyqkt 25 (53) |||||..-|.. T Consensus 1 spgfyv~~qt~ 11 (64) T 2qvw_A 1 SPGFYVEQQTD 11 (64) T ss_dssp CCEEECCC--- T ss_pred CCCEEEEECCC T ss_conf 99647764267 Done!