Query 537021.9.peg.612_1
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 23:52:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ee4_A Probable ribonucleosid 56.8 2.6 7.8E-05 22.2 0.0 19 35-53 300-318 (323)
2 >1r2f_A Protein (ribonucleotid 52.3 3.8 0.00011 21.5 0.2 23 31-53 154-176 (191)
3 >1h0o_A Ribonucleoside-diphosp 46.0 5.7 0.00017 20.6 0.3 25 29-53 128-152 (172)
4 >1syy_A Ribonucleoside-diphosp 44.2 5.5 0.00016 20.7 0.0 18 36-53 321-338 (346)
5 >3dhz_A Ribonucleotide reducta 41.0 7 0.00021 20.2 0.1 23 31-53 154-176 (191)
6 >2p1i_A Ribonucleotide reducta 38.6 7.1 0.00021 20.2 -0.1 25 29-53 144-168 (188)
7 >1jk0_B RNR Y4, ribonucleoside 35.3 9.2 0.00027 19.7 0.0 25 29-53 153-177 (199)
8 >1jk0_A RNR Y2, ribonucleoside 25.7 20 0.0006 18.0 0.4 25 29-53 248-272 (295)
9 >2rcc_A Ribonucleoside-diphosp 17.1 33 0.00097 17.0 0.0 14 40-53 172-185 (197)
10 >2qvw_A GLP_546_48378_50642; d 10.0 83 0.0024 15.1 0.4 11 15-25 1-11 (64)
No 1
>>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:)
Probab=56.78 E-value=2.6 Score=22.24 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=16.1
Q ss_pred HHCCHHHHCCCEECCCCCC
Q ss_conf 0023021024000001369
Q 537021.9.peg.6 35 SKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 35 skmdlkkennffetrttey 53 (53)
.-+++.+..||||+|.|+|
T Consensus 300 ~~~~~~~~~nFFe~~~~~Y 318 (323)
T 3ee4_A 300 DYSPAQLEDTFADEDRRTL 318 (323)
T ss_dssp -------------------
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 6897999999889899998
No 2
>>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319)
Probab=52.28 E-value=3.8 Score=21.50 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=18.0
Q ss_pred HHHHHHCCHHHHCCCEECCCCCC
Q ss_conf 21110023021024000001369
Q 537021.9.peg.6 31 IFHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 31 ifhkskmdlkkennffetrttey 53 (53)
++-...++..+..||||+|.|+|
T Consensus 154 ~~~~~~~~~~~~~nFFe~r~t~Y 176 (191)
T 1r2f_A 154 ILAALSPNADENHDFFSGSGSSY 176 (191)
T ss_dssp HHHHHCC----------------
T ss_pred HHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 89986514574588877875541
No 3
>>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:219-390)
Probab=45.96 E-value=5.7 Score=20.65 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=19.1
Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC
Q ss_conf 0021110023021024000001369
Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53)
|.+-.-..+...+..||||+|.++|
T Consensus 128 nP~~~~~~~~~~~~~nFFe~~~t~Y 152 (172)
T 1h0o_A 128 NPFDFMENISLEGKTNFFEKRVGEY 152 (172)
T ss_dssp CSCGGGC------------------
T ss_pred CCHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 9857898612567757765657866
No 4
>>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:)
Probab=44.23 E-value=5.5 Score=20.73 Aligned_cols=18 Identities=67% Similarity=1.093 Sum_probs=15.7
Q ss_pred HCCHHHHCCCEECCCCCC
Q ss_conf 023021024000001369
Q 537021.9.peg.6 36 KMDLKKENNFFETRTTEY 53 (53)
Q Consensus 36 kmdlkkennffetrttey 53 (53)
-++..+..||||+|.|+|
T Consensus 321 ~~~~~~~~nfFe~~~~~Y 338 (346)
T 1syy_A 321 TIDLNKEKNFFETRVIEY 338 (346)
T ss_dssp ------------------
T ss_pred HHCCCCCCCCCCCCHHHC
T ss_conf 738677757788973313
No 5
>>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329)
Probab=41.00 E-value=7 Score=20.21 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=17.0
Q ss_pred HHHHHHCCHHHHCCCEECCCCCC
Q ss_conf 21110023021024000001369
Q 537021.9.peg.6 31 IFHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 31 ifhkskmdlkkennffetrttey 53 (53)
++..-..+..+..||||+|.|+|
T Consensus 154 ~~~~~~~~~~~~~nFFe~r~t~Y 176 (191)
T 3dhz_A 154 ILSSLSPNADENHDFFSGSGSSY 176 (191)
T ss_dssp HHHHHC-----------------
T ss_pred HHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 89875302465678774774434
No 6
>>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:162-349)
Probab=38.62 E-value=7.1 Score=20.18 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=17.8
Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC
Q ss_conf 0021110023021024000001369
Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53)
|.+-.-..+...+..||||+|.++|
T Consensus 144 nP~~w~~~~~~~~~~nFFE~~~t~Y 168 (188)
T 2p1i_A 144 NPFNWMDLISLQGKTNFFEKRVADY 168 (188)
T ss_dssp CSCCC--------------------
T ss_pred CCCCCHHHCCCCCCCCCCCCCHHHH
T ss_conf 9965055515674557887776563
No 7
>>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345)
Probab=35.34 E-value=9.2 Score=19.66 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=17.3
Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC
Q ss_conf 0021110023021024000001369
Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53)
|.+-.-..+...+..||||+|.|+|
T Consensus 153 nP~~~~~~~~~~~~~nFFe~~~t~Y 177 (199)
T 1jk0_B 153 NPFEFMEDVATAGKTTFFEKKVSDY 177 (199)
T ss_dssp -------------------------
T ss_pred CCHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 9757999873757765567765531
No 8
>>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419)
Probab=25.73 E-value=20 Score=18.02 Aligned_cols=25 Identities=32% Similarity=0.608 Sum_probs=16.5
Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC
Q ss_conf 0021110023021024000001369
Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53)
Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53)
|.+-.-..+...+..||||+|.++|
T Consensus 248 NP~~wme~~~d~~ktNFFE~rvs~Y 272 (295)
T 1jk0_A 248 NPFDFMENISLAGKTNFFEKRVSDY 272 (295)
T ss_dssp CCCGGGGC-----------------
T ss_pred CCCHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 9825888724578878767878878
No 9
>>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:150-346)
Probab=17.08 E-value=33 Score=17.03 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=11.3
Q ss_pred HHHCCCEECCCCCC
Q ss_conf 21024000001369
Q 537021.9.peg.6 40 KKENNFFETRTTEY 53 (53)
Q Consensus 40 kkennffetrttey 53 (53)
++..||||+|.++|
T Consensus 172 ~~~~nFFe~~~~~Y 185 (197)
T 2rcc_A 172 SGKSDFFEQKSRQY 185 (197)
T ss_dssp --------------
T ss_pred CCCCCCCCCCHHHH
T ss_conf 65358888876875
No 10
>>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A (A:543-606)
Probab=9.98 E-value=83 Score=15.11 Aligned_cols=11 Identities=55% Similarity=0.993 Sum_probs=8.2
Q ss_pred CCCEEEEEEEE
Q ss_conf 98457774110
Q 537021.9.peg.6 15 SPGFYFHYQKT 25 (53)
Q Consensus 15 spgfyfhyqkt 25 (53)
|||||..-|..
T Consensus 1 spgfyv~~qt~ 11 (64)
T 2qvw_A 1 SPGFYVEQQTD 11 (64)
T ss_dssp CCEEECCC---
T ss_pred CCCEEEEECCC
T ss_conf 99647764267
Done!