Query         537021.9.peg.612_1
Match_columns 53
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 23:05:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1syy_A Ribonucleoside-diphosph  70.1    0.74 3.1E-05   24.1   0.0   18   36-53    321-338 (346)
  2 1h0o_A Ribonucleoside-diphosph  65.4     1.2 5.1E-05   23.1   0.3   25   29-53    346-370 (390)
  3 3n37_A Ribonucleoside-diphosph  56.7     1.9   8E-05   22.2   0.1   18   36-53    287-304 (319)
  4 2p1i_A Ribonucleotide reductas  39.2     5.1 0.00022   20.1   0.0   18   36-53    312-329 (349)
  5 1jk0_A RNR Y2, ribonucleoside-  32.1     9.4 0.00039   18.9   0.4   19   35-53    378-396 (419)
  6 1jk0_B RNR Y4, ribonucleoside-  31.0     8.4 0.00035   19.1   0.0   16   38-53    308-323 (345)
  7 3dhz_A Ribonucleotide reductas  26.6      11 0.00047   18.5   0.0   16   38-53    299-314 (329)
  8 2rcc_A Ribonucleoside-diphosph  18.2      21 0.00088   17.2   0.0   13   41-53    322-334 (346)
  9 1mxr_A Ribonucleotide reductas  14.7      29  0.0012   16.6   0.0   14   40-53    343-356 (375)
 10 3l39_A Putative PHOU-like phos  12.0      28  0.0012   16.6  -0.7   22   23-47      9-30  (227)

No 1  
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A
Probab=70.06  E-value=0.74  Score=24.13  Aligned_cols=18  Identities=67%  Similarity=1.093  Sum_probs=15.2

Q ss_pred             HCCHHHHCCCEECCCCCC
Q ss_conf             023021024000001369
Q 537021.9.peg.6   36 KMDLKKENNFFETRTTEY   53 (53)
Q Consensus        36 kmdlkkennffetrttey   53 (53)
                      -+++.+..||||+|.|+|
T Consensus       321 ~~~~~~~~nFFe~r~~~Y  338 (346)
T 1syy_A          321 TIDLNKEKNFFETRVIEY  338 (346)
T ss_dssp             ------------------
T ss_pred             HHCCCCCCCCCCCCHHCC
T ss_conf             638677768788972104


No 2  
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=65.37  E-value=1.2  Score=23.12  Aligned_cols=25  Identities=36%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             CHHHHHHHCCHHHHCCCEECCCCCC
Q ss_conf             0021110023021024000001369
Q 537021.9.peg.6   29 NSIFHKSKMDLKKENNFFETRTTEY   53 (53)
Q Consensus        29 nsifhkskmdlkkennffetrttey   53 (53)
                      |.+-.-..+++.+..||||+|.++|
T Consensus       346 NP~~wme~i~~~~ktnFFE~rvt~Y  370 (390)
T 1h0o_A          346 NPFDFMENISLEGKTNFFEKRVGEY  370 (390)
T ss_dssp             CSCGGGC------------------
T ss_pred             CCHHHHHHHCCCCCCCCCCCCHHHC
T ss_conf             9609998622478877767772320


No 3  
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=56.74  E-value=1.9  Score=22.19  Aligned_cols=18  Identities=17%  Similarity=0.482  Sum_probs=14.7

Q ss_pred             HCCHHHHCCCEECCCCCC
Q ss_conf             023021024000001369
Q 537021.9.peg.6   36 KMDLKKENNFFETRTTEY   53 (53)
Q Consensus        36 kmdlkkennffetrttey   53 (53)
                      ..+..+..||||+|.|+|
T Consensus       287 ~~~~~~~~nFFE~~~t~Y  304 (319)
T 3n37_A          287 SPNADENHDFFSGSGSSY  304 (319)
T ss_dssp             CC----------------
T ss_pred             HCCCCCCCCCCCCCHHHC
T ss_conf             206664568878870102


No 4  
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
Probab=39.17  E-value=5.1  Score=20.13  Aligned_cols=18  Identities=39%  Similarity=0.820  Sum_probs=14.2

Q ss_pred             HCCHHHHCCCEECCCCCC
Q ss_conf             023021024000001369
Q 537021.9.peg.6   36 KMDLKKENNFFETRTTEY   53 (53)
Q Consensus        36 kmdlkkennffetrttey   53 (53)
                      .+++.+..||||+|.|+|
T Consensus       312 ~~~~~~ktnFFe~r~t~Y  329 (349)
T 2p1i_A          312 LISLQGKTNFFEKRVADY  329 (349)
T ss_dssp             ------------------
T ss_pred             HHCCCCCCCCCCCCHHHH
T ss_conf             853576778888876764


No 5  
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=32.09  E-value=9.4  Score=18.89  Aligned_cols=19  Identities=37%  Similarity=0.814  Sum_probs=14.9

Q ss_pred             HHCCHHHHCCCEECCCCCC
Q ss_conf             0023021024000001369
Q 537021.9.peg.6   35 SKMDLKKENNFFETRTTEY   53 (53)
Q Consensus        35 skmdlkkennffetrttey   53 (53)
                      ..+++.+..||||+|.++|
T Consensus       378 e~i~~~~ktnFFE~rvt~Y  396 (419)
T 1jk0_A          378 ENISLAGKTNFFEKRVSDY  396 (419)
T ss_dssp             GC-----------------
T ss_pred             HHHCCCCCCCCCCCCHHHH
T ss_conf             8734578777766768888


No 6  
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=31.03  E-value=8.4  Score=19.12  Aligned_cols=16  Identities=25%  Similarity=0.657  Sum_probs=12.0

Q ss_pred             CHHHHCCCEECCCCCC
Q ss_conf             3021024000001369
Q 537021.9.peg.6   38 DLKKENNFFETRTTEY   53 (53)
Q Consensus        38 dlkkennffetrttey   53 (53)
                      ...+..||||+|.|+|
T Consensus       308 ~~~~ktnFFe~r~t~Y  323 (345)
T 1jk0_B          308 ATAGKTTFFEKKVSDY  323 (345)
T ss_dssp             ----------------
T ss_pred             HCCCCCCCCCCCHHHC
T ss_conf             3767764457763312


No 7  
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A 1uzr_A*
Probab=26.57  E-value=11  Score=18.53  Aligned_cols=16  Identities=19%  Similarity=0.590  Sum_probs=12.7

Q ss_pred             CHHHHCCCEECCCCCC
Q ss_conf             3021024000001369
Q 537021.9.peg.6   38 DLKKENNFFETRTTEY   53 (53)
Q Consensus        38 dlkkennffetrttey   53 (53)
                      +..+..||||+|.|+|
T Consensus       299 ~~~~~~nFFE~~~t~Y  314 (329)
T 3dhz_A          299 NADENHDFFSGSGSSY  314 (329)
T ss_dssp             ----------------
T ss_pred             CCCCCCCCCCCCHHHH
T ss_conf             5675678754763310


No 8  
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=18.21  E-value=21  Score=17.23  Aligned_cols=13  Identities=31%  Similarity=0.879  Sum_probs=10.9

Q ss_pred             HHCCCEECCCCCC
Q ss_conf             1024000001369
Q 537021.9.peg.6   41 KENNFFETRTTEY   53 (53)
Q Consensus        41 kennffetrttey   53 (53)
                      ...||||.|.++|
T Consensus       322 ~~~nFFE~~~t~Y  334 (346)
T 2rcc_A          322 GKSDFFEQKSRQY  334 (346)
T ss_dssp             -------------
T ss_pred             CCCCCCCCCHHHH
T ss_conf             5258888977875


No 9  
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ...
Probab=14.67  E-value=29  Score=16.56  Aligned_cols=14  Identities=14%  Similarity=0.131  Sum_probs=11.3

Q ss_pred             HHHCCCEECCCCCC
Q ss_conf             21024000001369
Q 537021.9.peg.6   40 KKENNFFETRTTEY   53 (53)
Q Consensus        40 kkennffetrttey   53 (53)
                      ++..||||.|.|+|
T Consensus       343 ~~~~nFFe~~~t~Y  356 (375)
T 1mxr_A          343 NVQVAPQEVEVSSY  356 (375)
T ss_dssp             --------------
T ss_pred             CCCCCCCCCCCHHE
T ss_conf             87548766870001


No 10 
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=12.03  E-value=28  Score=16.60  Aligned_cols=22  Identities=41%  Similarity=0.549  Sum_probs=16.4

Q ss_pred             EEEHHCCHHHHHHHCCHHHHCCCEE
Q ss_conf             1100100021110023021024000
Q 537021.9.peg.6   23 QKTIMSNSIFHKSKMDLKKENNFFE   47 (53)
Q Consensus        23 qktimsnsifhkskmdlkkennffe   47 (53)
                      ...-|.|++|++-   +.|+.+||+
T Consensus         9 ~~~~~~~~~f~~l---~Pk~~~ff~   30 (227)
T 3l39_A            9 HHHHMKNSFFSKF---TPKEPKFFP   30 (227)
T ss_dssp             ----------CCC---CCCCCCHHH
T ss_pred             HHHHHHHHHHHHH---CCCCCHHHH
T ss_conf             7899888898753---699844899


Done!