Query 537021.9.peg.612_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:05:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1syy_A Ribonucleoside-diphosph 70.1 0.74 3.1E-05 24.1 0.0 18 36-53 321-338 (346) 2 1h0o_A Ribonucleoside-diphosph 65.4 1.2 5.1E-05 23.1 0.3 25 29-53 346-370 (390) 3 3n37_A Ribonucleoside-diphosph 56.7 1.9 8E-05 22.2 0.1 18 36-53 287-304 (319) 4 2p1i_A Ribonucleotide reductas 39.2 5.1 0.00022 20.1 0.0 18 36-53 312-329 (349) 5 1jk0_A RNR Y2, ribonucleoside- 32.1 9.4 0.00039 18.9 0.4 19 35-53 378-396 (419) 6 1jk0_B RNR Y4, ribonucleoside- 31.0 8.4 0.00035 19.1 0.0 16 38-53 308-323 (345) 7 3dhz_A Ribonucleotide reductas 26.6 11 0.00047 18.5 0.0 16 38-53 299-314 (329) 8 2rcc_A Ribonucleoside-diphosph 18.2 21 0.00088 17.2 0.0 13 41-53 322-334 (346) 9 1mxr_A Ribonucleotide reductas 14.7 29 0.0012 16.6 0.0 14 40-53 343-356 (375) 10 3l39_A Putative PHOU-like phos 12.0 28 0.0012 16.6 -0.7 22 23-47 9-30 (227) No 1 >1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A Probab=70.06 E-value=0.74 Score=24.13 Aligned_cols=18 Identities=67% Similarity=1.093 Sum_probs=15.2 Q ss_pred HCCHHHHCCCEECCCCCC Q ss_conf 023021024000001369 Q 537021.9.peg.6 36 KMDLKKENNFFETRTTEY 53 (53) Q Consensus 36 kmdlkkennffetrttey 53 (53) -+++.+..||||+|.|+| T Consensus 321 ~~~~~~~~nFFe~r~~~Y 338 (346) T 1syy_A 321 TIDLNKEKNFFETRVIEY 338 (346) T ss_dssp ------------------ T ss_pred HHCCCCCCCCCCCCHHCC T ss_conf 638677768788972104 No 2 >1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Probab=65.37 E-value=1.2 Score=23.12 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=19.0 Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC Q ss_conf 0021110023021024000001369 Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53) |.+-.-..+++.+..||||+|.++| T Consensus 346 NP~~wme~i~~~~ktnFFE~rvt~Y 370 (390) T 1h0o_A 346 NPFDFMENISLEGKTNFFEKRVGEY 370 (390) T ss_dssp CSCGGGC------------------ T ss_pred CCHHHHHHHCCCCCCCCCCCCHHHC T ss_conf 9609998622478877767772320 No 3 >3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Probab=56.74 E-value=1.9 Score=22.19 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=14.7 Q ss_pred HCCHHHHCCCEECCCCCC Q ss_conf 023021024000001369 Q 537021.9.peg.6 36 KMDLKKENNFFETRTTEY 53 (53) Q Consensus 36 kmdlkkennffetrttey 53 (53) ..+..+..||||+|.|+| T Consensus 287 ~~~~~~~~nFFE~~~t~Y 304 (319) T 3n37_A 287 SPNADENHDFFSGSGSSY 304 (319) T ss_dssp CC---------------- T ss_pred HCCCCCCCCCCCCCHHHC T ss_conf 206664568878870102 No 4 >2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} Probab=39.17 E-value=5.1 Score=20.13 Aligned_cols=18 Identities=39% Similarity=0.820 Sum_probs=14.2 Q ss_pred HCCHHHHCCCEECCCCCC Q ss_conf 023021024000001369 Q 537021.9.peg.6 36 KMDLKKENNFFETRTTEY 53 (53) Q Consensus 36 kmdlkkennffetrttey 53 (53) .+++.+..||||+|.|+| T Consensus 312 ~~~~~~ktnFFe~r~t~Y 329 (349) T 2p1i_A 312 LISLQGKTNFFEKRVADY 329 (349) T ss_dssp ------------------ T ss_pred HHCCCCCCCCCCCCHHHH T ss_conf 853576778888876764 No 5 >1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Probab=32.09 E-value=9.4 Score=18.89 Aligned_cols=19 Identities=37% Similarity=0.814 Sum_probs=14.9 Q ss_pred HHCCHHHHCCCEECCCCCC Q ss_conf 0023021024000001369 Q 537021.9.peg.6 35 SKMDLKKENNFFETRTTEY 53 (53) Q Consensus 35 skmdlkkennffetrttey 53 (53) ..+++.+..||||+|.++| T Consensus 378 e~i~~~~ktnFFE~rvt~Y 396 (419) T 1jk0_A 378 ENISLAGKTNFFEKRVSDY 396 (419) T ss_dssp GC----------------- T ss_pred HHHCCCCCCCCCCCCHHHH T ss_conf 8734578777766768888 No 6 >1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Probab=31.03 E-value=8.4 Score=19.12 Aligned_cols=16 Identities=25% Similarity=0.657 Sum_probs=12.0 Q ss_pred CHHHHCCCEECCCCCC Q ss_conf 3021024000001369 Q 537021.9.peg.6 38 DLKKENNFFETRTTEY 53 (53) Q Consensus 38 dlkkennffetrttey 53 (53) ...+..||||+|.|+| T Consensus 308 ~~~~ktnFFe~r~t~Y 323 (345) T 1jk0_B 308 ATAGKTTFFEKKVSDY 323 (345) T ss_dssp ---------------- T ss_pred HCCCCCCCCCCCHHHC T ss_conf 3767764457763312 No 7 >3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A 1uzr_A* Probab=26.57 E-value=11 Score=18.53 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=12.7 Q ss_pred CHHHHCCCEECCCCCC Q ss_conf 3021024000001369 Q 537021.9.peg.6 38 DLKKENNFFETRTTEY 53 (53) Q Consensus 38 dlkkennffetrttey 53 (53) +..+..||||+|.|+| T Consensus 299 ~~~~~~nFFE~~~t~Y 314 (329) T 3dhz_A 299 NADENHDFFSGSGSSY 314 (329) T ss_dssp ---------------- T ss_pred CCCCCCCCCCCCHHHH T ss_conf 5675678754763310 No 8 >2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Probab=18.21 E-value=21 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=10.9 Q ss_pred HHCCCEECCCCCC Q ss_conf 1024000001369 Q 537021.9.peg.6 41 KENNFFETRTTEY 53 (53) Q Consensus 41 kennffetrttey 53 (53) ...||||.|.++| T Consensus 322 ~~~nFFE~~~t~Y 334 (346) T 2rcc_A 322 GKSDFFEQKSRQY 334 (346) T ss_dssp ------------- T ss_pred CCCCCCCCCHHHH T ss_conf 5258888977875 No 9 >1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ... Probab=14.67 E-value=29 Score=16.56 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=11.3 Q ss_pred HHHCCCEECCCCCC Q ss_conf 21024000001369 Q 537021.9.peg.6 40 KKENNFFETRTTEY 53 (53) Q Consensus 40 kkennffetrttey 53 (53) ++..||||.|.|+| T Consensus 343 ~~~~nFFe~~~t~Y 356 (375) T 1mxr_A 343 NVQVAPQEVEVSSY 356 (375) T ss_dssp -------------- T ss_pred CCCCCCCCCCCHHE T ss_conf 87548766870001 No 10 >3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron} Probab=12.03 E-value=28 Score=16.60 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=16.4 Q ss_pred EEEHHCCHHHHHHHCCHHHHCCCEE Q ss_conf 1100100021110023021024000 Q 537021.9.peg.6 23 QKTIMSNSIFHKSKMDLKKENNFFE 47 (53) Q Consensus 23 qktimsnsifhkskmdlkkennffe 47 (53) ...-|.|++|++- +.|+.+||+ T Consensus 9 ~~~~~~~~~f~~l---~Pk~~~ff~ 30 (227) T 3l39_A 9 HHHHMKNSFFSKF---TPKEPKFFP 30 (227) T ss_dssp ----------CCC---CCCCCCHHH T ss_pred HHHHHHHHHHHHH---CCCCCHHHH T ss_conf 7899888898753---699844899 Done!