RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.612_1 (53 letters) >gnl|CDD|38784 KOG3577, KOG3577, KOG3577, Smoothened and related G-protein-coupled receptors [Signal transduction mechanisms]. Length = 556 Score = 25.4 bits (55), Expect = 3.6 Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 21 HYQKTIMSNSIFHKSKMDLKKENNFFE 47 Y T M N + H+++ + + + F Sbjct: 55 GYNMTAMPNLVGHETQEEAGLKLHQFH 81 >gnl|CDD|35530 KOG0309, KOG0309, KOG0309, Conserved WD40 repeat-containing protein [Function unknown]. Length = 1081 Score = 24.7 bits (53), Expect = 5.3 Identities = 11/45 (24%), Positives = 16/45 (35%) Query: 2 DDFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKENNFF 46 + HLS E S F S S H+ + D K ++ Sbjct: 899 EAEHLSLRWGESSPEESRFGSLTYSDSPSERHRDQHDKNKRHDDI 943 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.134 0.391 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 628,078 Number of extensions: 21047 Number of successful extensions: 59 Number of sequences better than 10.0: 1 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 7 Length of query: 53 Length of database: 6,263,737 Length adjustment: 26 Effective length of query: 27 Effective length of database: 5,701,903 Effective search space: 153951381 Effective search space used: 153951381 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.5 bits)