RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.612_1
         (53 letters)



>gnl|CDD|38784 KOG3577, KOG3577, KOG3577, Smoothened and related
          G-protein-coupled receptors [Signal transduction
          mechanisms].
          Length = 556

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 21 HYQKTIMSNSIFHKSKMDLKKENNFFE 47
           Y  T M N + H+++ +   + + F 
Sbjct: 55 GYNMTAMPNLVGHETQEEAGLKLHQFH 81


>gnl|CDD|35530 KOG0309, KOG0309, KOG0309, Conserved WD40 repeat-containing protein
           [Function unknown].
          Length = 1081

 Score = 24.7 bits (53), Expect = 5.3
 Identities = 11/45 (24%), Positives = 16/45 (35%)

Query: 2   DDFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKENNFF 46
           +  HLS    E S     F       S S  H+ + D  K ++  
Sbjct: 899 EAEHLSLRWGESSPEESRFGSLTYSDSPSERHRDQHDKNKRHDDI 943


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 628,078
Number of extensions: 21047
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 7
Length of query: 53
Length of database: 6,263,737
Length adjustment: 26
Effective length of query: 27
Effective length of database: 5,701,903
Effective search space: 153951381
Effective search space used: 153951381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)