RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.612_1
         (53 letters)



>gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit
           beta; Validated.
          Length = 369

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 13/17 (76%), Positives = 14/17 (82%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DLKKE NFFETR  EY
Sbjct: 344 IDLKKEKNFFETRVIEY 360


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 794,790
Number of extensions: 30531
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 5
Length of query: 53
Length of database: 5,994,473
Length adjustment: 26
Effective length of query: 27
Effective length of database: 5,432,665
Effective search space: 146681955
Effective search space used: 146681955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)