RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.612_1
         (53 letters)



>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
           activation, iron coupled radical, immune evasion,
           replication; 1.70A {Chlamydia trachomatis} SCOP:
           a.25.1.2 PDB: 2ani_A
          Length = 346

 Score = 27.4 bits (60), Expect = 0.82
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DL KE NFFETR  EY
Sbjct: 322 IDLNKEKNFFETRVIEY 338


>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
           ribonucleotide reductase, dinuclear metal-cluster; 2.2A
           {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A
           1xsm_A 2uw2_A 3hf1_A 2vux_A
          Length = 390

 Score = 27.0 bits (59), Expect = 0.95
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 37  MDLKKENNFFETRTTEY 53
           + L+ + NFFE R  EY
Sbjct: 354 ISLEGKTNFFEKRVGEY 370


>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
           reductase, four-helix bundle, dimanganese CLU
           oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
           3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
          Length = 319

 Score = 27.1 bits (59), Expect = 1.1
 Identities = 5/34 (14%), Positives = 14/34 (41%)

Query: 20  FHYQKTIMSNSIFHKSKMDLKKENNFFETRTTEY 53
           F  +   ++ +I      +  + ++FF    + Y
Sbjct: 271 FPAEMAEVNPAILAALSPNADENHDFFSGSGSSY 304


>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
          Length = 419

 Score = 26.2 bits (57), Expect = 1.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 37  MDLKKENNFFETRTTEY 53
           + L  + NFFE R ++Y
Sbjct: 380 ISLAGKTNFFEKRVSDY 396


>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism,
           oxidoreductase; 2.10A {Salmonella typhimurium} SCOP:
           a.25.1.2 PDB: 2bq1_I* 2r2f_A
          Length = 319

 Score = 25.1 bits (54), Expect = 4.4
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 31  IFHKSKMDLKKENNFFETRTTEY 53
           I      +  + ++FF    + Y
Sbjct: 282 ILAALSPNADENHDFFSGSGSSY 304


>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
           PY03671, structural genomics consortium, SGC,
           oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
          Length = 349

 Score = 24.8 bits (53), Expect = 4.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 37  MDLKKENNFFETRTTEY 53
           + L+ + NFFE R  +Y
Sbjct: 313 ISLQGKTNFFEKRVADY 329


>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond,
           metal binding protein; 1.63A {Corynebacterium
           ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A
           1kgn_A 1uzr_A*
          Length = 329

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 19  YFHYQKTIMSNSIFHKSKMDLKKENNFFETRTTEY 53
            F   +T +S +I      +  + ++FF    + Y
Sbjct: 280 LFPTDETKVSPAILSSLSPNADENHDFFSGSGSSY 314


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 435,350
Number of extensions: 12647
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 13
Length of query: 53
Length of database: 5,693,230
Length adjustment: 25
Effective length of query: 28
Effective length of database: 5,087,130
Effective search space: 142439640
Effective search space used: 142439640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)