BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.612_1
         (53 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.612_1 
          Length = 53

 Score =  109 bits (272), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  LDDFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKENNFFETRTTEY 53
          LDDFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKENNFFETRTTEY
Sbjct: 1  LDDFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKENNFFETRTTEY 53


>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 33.1 bits (74), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DLKKE NFFETR TEY
Sbjct: 327 IDLKKEKNFFETRVTEY 343


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 33.1 bits (74), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DLKKE NFFETR TEY
Sbjct: 327 IDLKKEKNFFETRVTEY 343


>537021.9.peg.75_1 
          Length = 136

 Score = 33.1 bits (74), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DLKKE NFFETR TEY
Sbjct: 111 IDLKKEKNFFETRVTEY 127


>gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 125

 Score = 32.7 bits (73), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DLKKE NFFETR TEY
Sbjct: 100 IDLKKEKNFFETRVTEY 116


>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 125

 Score = 32.7 bits (73), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DLKKE NFFETR TEY
Sbjct: 100 IDLKKEKNFFETRVTEY 116


>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 21.6 bits (44), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 3   DFHLSDLIHEE---SSPGFY---FHYQKTIMSNSIFHKSKMDLKKENNFF 46
           D  L D +H E   S+P      FH   +++S ++   SK D+ +   F+
Sbjct: 393 DCSLGDDVHRENMFSAPEISVDGFHEGSSLVSPALKSNSKRDVAQNRKFW 442


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,096
Number of Sequences: 1233
Number of extensions: 1053
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 53
length of database: 328,796
effective HSP length: 25
effective length of query: 28
effective length of database: 297,971
effective search space:  8343188
effective search space used:  8343188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)