Query 537021.9.peg.634_1
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 07:53:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_634.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2dhm_A Protein BOLA; stationa 14.1 41 0.0012 16.8 -0.1 14 4-17 49-62 (107)
2 >1ny8_A Protein YRBA; structur 13.5 38 0.0011 17.0 -0.4 15 4-18 36-50 (97)
3 >2kdn_A Putative uncharacteriz 10.7 58 0.0017 16.1 -0.2 14 4-17 58-71 (108)
4 >1mkf_A M3; decoy receptor, PS 10.3 47 0.0014 16.5 -0.8 19 12-30 154-172 (172)
5 >2g6t_A Uncharacterized protei 10.2 83 0.0025 15.3 0.4 25 13-37 13-44 (95)
6 >1xs3_A Hypothetical protein X 8.3 85 0.0025 15.2 -0.2 13 4-16 37-49 (80)
7 >1v60_A BOLA1, riken cDNA 1810 8.2 92 0.0027 15.1 -0.0 38 4-43 66-109 (123)
8 >2noo_A NIKA, nickel-binding p 5.4 1.6E+02 0.0046 13.9 -0.0 13 12-24 29-41 (105)
9 >1wrj_A Methylated-DNA--protei 5.4 1.8E+02 0.0054 13.6 0.3 24 1-24 13-36 (68)
10 >1v9j_A BOLA-like protein rike 5.2 1E+02 0.003 14.9 -1.1 31 4-37 65-101 (113)
No 1
>>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} (A:)
Probab=14.10 E-value=41 Score=16.84 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.0
Q ss_pred HHHHHHHCCCHHHH
Q ss_conf 45556526501303
Q 537021.9.peg.6 4 RIVSSIFSGQSLVY 17 (45)
Q Consensus 4 rivssifsgqslvy 17 (45)
.|||..|.|.|+|-
T Consensus 49 ~IVS~~F~G~s~v~ 62 (107)
T 2dhm_A 49 VLVSDRFTGERFLN 62 (107)
T ss_dssp EEECGGGSSCCSSH
T ss_pred EEEECCCCCCCHHH
T ss_conf 99705414888999
No 2
>>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=13.52 E-value=38 Score=17.01 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=11.5
Q ss_pred HHHHHHHCCCHHHHH
Q ss_conf 455565265013033
Q 537021.9.peg.6 4 RIVSSIFSGQSLVYE 18 (45)
Q Consensus 4 rivssifsgqslvye 18 (45)
.|||..|.|+|+|-.
T Consensus 36 ~IvS~~F~Gks~v~R 50 (97)
T 1ny8_A 36 IAVGELFDGMSRVKK 50 (97)
T ss_dssp EEESSTTSSSCHHHH
T ss_pred EEEEHHHCCCCHHHH
T ss_conf 998077689988999
No 3
>>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} (A:)
Probab=10.74 E-value=58 Score=16.07 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=11.0
Q ss_pred HHHHHHHCCCHHHH
Q ss_conf 45556526501303
Q 537021.9.peg.6 4 RIVSSIFSGQSLVY 17 (45)
Q Consensus 4 rivssifsgqslvy 17 (45)
.|||..|.|.|+|-
T Consensus 58 ~VVS~~F~G~s~v~ 71 (108)
T 2kdn_A 58 VIVSNNFEDKKLLD 71 (108)
T ss_dssp EEECGGGTTCCHHH
T ss_pred EEECHHHCCCCHHH
T ss_conf 99827877996899
No 4
>>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid herpesvirus 4} (A:211-382)
Probab=10.30 E-value=47 Score=16.53 Aligned_cols=19 Identities=42% Similarity=0.845 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHEEECCC
Q ss_conf 5013033000112030465
Q 537021.9.peg.6 12 GQSLVYEKILFEIEFLGDH 30 (45)
Q Consensus 12 gqslvyekilfeieflgdh 30 (45)
|-|+..|.--..||++|||
T Consensus 154 Gvsl~~eGQq~Rl~Y~G~~ 172 (172)
T 1mkf_A 154 GVSLMLEGQQYRLEYFGDH 172 (172)
T ss_dssp EEEEEETTEEEEEESSCCC
T ss_pred EEEEEECCCEEEEECCCCC
T ss_conf 6999974700021012589
No 5
>>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} (A:1-95)
Probab=10.19 E-value=83 Score=15.28 Aligned_cols=25 Identities=48% Similarity=0.806 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHH-------EEECCCCEEEEEE
Q ss_conf 013033000112-------0304653289999
Q 537021.9.peg.6 13 QSLVYEKILFEI-------EFLGDHHRYACFI 37 (45)
Q Consensus 13 qslvyekilfei-------eflgdhhryacfi 37 (45)
-.|.|.|.|||| |-|-....||-+|
T Consensus 13 ytlaydkllfeiskgnlsiealiskdkyakyi 44 (95)
T 2g6t_A 13 YTLAYDKLLFEISKGNLSIEALISKDKYAKYI 44 (95)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECSSCSCSBS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHC
T ss_conf 88888889999973574699986154477752
No 6
>>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} (A:)
Probab=8.27 E-value=85 Score=15.25 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.4
Q ss_pred HHHHHHHCCCHHH
Q ss_conf 4555652650130
Q 537021.9.peg.6 4 RIVSSIFSGQSLV 16 (45)
Q Consensus 4 rivssifsgqslv 16 (45)
.|||..|.|.|+|
T Consensus 37 ~IvS~~F~g~s~v 49 (80)
T 1xs3_A 37 TVVSPAFVGKAPL 49 (80)
T ss_dssp EEECGGGCSSCCH
T ss_pred EEECHHHCCCCHH
T ss_conf 9981665889888
No 7
>>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=8.19 E-value=92 Score=15.08 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHHHHHHCCCHHH------HHHHHHHHEEECCCCEEEEEEEEECCC
Q ss_conf 4555652650130------330001120304653289999970378
Q 537021.9.peg.6 4 RIVSSIFSGQSLV------YEKILFEIEFLGDHHRYACFIFFKENY 43 (45)
Q Consensus 4 rivssifsgqslv------yekilfeieflgdhhryacfiffkeny 43 (45)
.|||..|.|+|+| |+-+ .-|+-+.-|-.....+-.+.|
T Consensus 66 ~IVS~~F~g~s~v~rHr~Vy~~L--~~el~~~IHALsikt~tp~Ew 109 (123)
T 1v60_A 66 AVVSSRFEGMSPLQRHRLVHEAL--SEELAGPVHALAIQAKTPAQW 109 (123)
T ss_dssp EEECGGGTTCCHHHHHHHHHHHT--HHHHTTTCSEEEEEEECTTTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHH--HHHHCCCCCEEEEEECCHHHH
T ss_conf 99978647987899999999999--999748974368781899999
No 8
>>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 1zlq_A* 3dp8_A* 3e3k_A* 1uiu_A 1uiv_A (A:1-35,A:144-213)
Probab=5.43 E-value=1.6e+02 Score=13.92 Aligned_cols=13 Identities=46% Similarity=0.626 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 5013033000112
Q 537021.9.peg.6 12 GQSLVYEKILFEI 24 (45)
Q Consensus 12 gqslvyekilfei 24 (45)
.||+|||++..+-
T Consensus 29 ~~~~~~~p~~~~~ 41 (105)
T 2noo_A 29 AQSMVYEPSQFKN 41 (105)
T ss_dssp HHHHHCCGGGEET
T ss_pred HHHHHHCHHHHHH
T ss_conf 9987603144320
No 9
>>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii} (A:63-130)
Probab=5.35 E-value=1.8e+02 Score=13.55 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=19.1
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 954455565265013033000112
Q 537021.9.peg.6 1 MVYRIVSSIFSGQSLVYEKILFEI 24 (45)
Q Consensus 1 mvyrivssifsgqslvyekilfei 24 (45)
.||+.+.+|-.|+..-|..|--.+
T Consensus 13 ~V~~~l~~IP~G~~~TY~~iA~~~ 36 (68)
T 1wrj_A 13 RVFKEVMRIKWGEVRTYKQVADAV 36 (68)
T ss_dssp HHHHHHTTSCTTCCEEHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999998419825533399999982
No 10
>>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} (A:)
Probab=5.22 E-value=1e+02 Score=14.87 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=16.3
Q ss_pred HHHHHHHCCCHHH------HHHHHHHHEEECCCCEEEEEE
Q ss_conf 4555652650130------330001120304653289999
Q 537021.9.peg.6 4 RIVSSIFSGQSLV------YEKILFEIEFLGDHHRYACFI 37 (45)
Q Consensus 4 rivssifsgqslv------yekilfeieflgdhhryacfi 37 (45)
.|||..|.|.++| |+-+- +.+++-|-.+..-
T Consensus 65 ~VvS~~F~Gks~v~rhr~Vy~~L~---~~i~~iHAlsikt 101 (113)
T 1v9j_A 65 LVVSAKFEGKPLLQRHRLVNECLA---EELPHIHAFEQKT 101 (113)
T ss_dssp EEECSHHHHSCHHHHHHHHHHHTT---TTGGGCSSEEEEE
T ss_pred EEEEHHHCCCCCCHHHHHHHHHHH---HHHHCCEEEEEEE
T ss_conf 998511268852588992899999---9973142048782
Done!