RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.634_1
         (45 letters)



>gnl|CDD|129183 TIGR00073, hypB, hydrogenase accessory protein HypB.  HypB is
          implicated in insertion of nickel into the large
          subunit of NiFe hydrogenases.
          Length = 207

 Score = 25.8 bits (57), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 2  VYRIVSSIFSGQSLVYEKILFEIEFLGDHHRYAC 35
          V   +SS  SG++ + EK+   I+ L D  + A 
Sbjct: 24 VLNFMSSPGSGKTTLIEKL---IDNLKDEVKIAV 54


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.335    0.150    0.463 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 735,272
Number of extensions: 27811
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 45
Length of database: 5,994,473
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,605,529
Effective search space: 151349283
Effective search space used: 151349283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.1 bits)