Query 537021.9.peg.658_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 22:10:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_658.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2hxj_A Hypothetical protein; 15.5 31 0.00091 17.7 -0.5 25 14-38 2-33 (56) 2 >2qv6_A MJ0145, GTP cyclohydro 14.6 1.2E+02 0.0036 14.8 3.0 35 2-36 48-90 (141) 3 >2o8p_A 14-3-3 domain containi 14.4 76 0.0022 15.8 1.3 16 15-30 5-20 (65) 4 >3ftb_A Histidinol-phosphate a 13.7 89 0.0026 15.4 1.5 18 15-32 2-21 (50) 5 >1s5j_A DNA polymerase I; repl 12.9 1.2E+02 0.0036 14.7 2.0 24 14-37 45-68 (103) 6 >2hv8_D RAB11 family-interacti 10.4 78 0.0023 15.7 0.4 22 14-35 42-63 (64) 7 >2d48_A Interleukin-4; four he 8.9 1.2E+02 0.0035 14.8 0.8 18 13-30 108-125 (129) 8 >1ujl_A Potassium voltage-gate 8.5 1.3E+02 0.0039 14.6 0.9 18 13-30 12-29 (42) 9 >3jyv_T S19E protein; eukaryot 8.4 1.6E+02 0.0046 14.2 1.3 18 11-28 122-139 (141) 10 >2jxj_A Histone demethylase ja 7.9 1.6E+02 0.0047 14.2 1.1 22 11-32 5-31 (37) No 1 >>2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.21A {Neisseria meningitidis MC58} (A:22-77) Probab=15.52 E-value=31 Score=17.73 Aligned_cols=25 Identities=48% Similarity=0.752 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHCC-------CEEEEEECC Q ss_conf 4666555577642118-------568866224 Q 537021.9.peg.6 14 KKDFLDNIAYHIKEKY-------PFVLGIEKS 38 (40) Q Consensus 14 kkdfldniayhikeky-------pfvlgieks 38 (40) ||.-.|-||-||-.|| |..+||+++ T Consensus 2 KkkQt~~iad~iY~kydVf~~FkPLAlGi~~~ 33 (56) T 2hxj_A 2 KKKQTEXIADHIYGKYDVFKRFKPLALGIDQD 33 (56) T ss_dssp HHHHHHHHHHHHHHHCHHHHTTCCBCTTHHHH T ss_pred HHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHH T ss_conf 25579999999998661315877830458999 No 2 >>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} (A:128-268) Probab=14.65 E-value=1.2e+02 Score=14.78 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=22.0 Q ss_pred CEEEEEECCHH------HHHHHHHHHHHHHHHCCCE--EEEEE Q ss_conf 10356302002------3466655557764211856--88662 Q 537021.9.peg.6 2 SCAFFFGGFTV------YKKDFLDNIAYHIKEKYPF--VLGIE 36 (40) Q Consensus 2 scafffggftv------ykkdfldniayhikekypf--vlgie 36 (40) +-+||.||=.+ -.++-+..+.+||++.||. -.||- T Consensus 48 ~l~Ff~GGDN~iav~n~~~~~~~~~~i~~I~n~~~v~lkvGIG 90 (141) T 2qv6_A 48 ALLFFIGGDNFMAPSNGMSEEDFLDIFNRINKKYKIELKAGIG 90 (141) T ss_dssp CCCEEEETTEEEEECTTCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_pred CEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 8899735856999889864778999999877650933898654 No 3 >>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, structural genomics, structural genomics consortium; HET: MSE; 1.82A {Cryptosporidium parvum} (A:163-227) Probab=14.39 E-value=76 Score=15.78 Aligned_cols=16 Identities=44% Similarity=0.816 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 6665555776421185 Q 537021.9.peg.6 15 KDFLDNIAYHIKEKYP 30 (40) Q Consensus 15 kdfldniayhikekyp 30 (40) -.|..|.||-..|||. T Consensus 5 lgfiqnlayilsekyg 20 (65) T 2o8p_A 5 LGFIQNLAYILSEKYG 20 (65) T ss_dssp HHHHHHHHHHHHHTSS T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999989999999945 No 4 >>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} (A:41-76,A:246-259) Probab=13.65 E-value=89 Score=15.43 Aligned_cols=18 Identities=56% Similarity=0.728 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHH--HCCCEE Q ss_conf 666555577642--118568 Q 537021.9.peg.6 15 KDFLDNIAYHIK--EKYPFV 32 (40) Q Consensus 15 kdfldniayhik--ekypfv 32 (40) |.|+.||.-.|| +|||-+ T Consensus 2 KSFtnNidEaIknl~kYPD~ 21 (50) T 3ftb_A 2 KSFLNNIDEGIKNLGVYPDV 21 (50) T ss_dssp HHHHTTHHHHHHGGGSCCCT T ss_pred HHHHHHHHHHHHHCCCCCCC T ss_conf 99999999998760369997 No 5 >>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} (A:455-482,A:614-688) Probab=12.86 E-value=1.2e+02 Score=14.73 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 466655557764211856886622 Q 537021.9.peg.6 14 KKDFLDNIAYHIKEKYPFVLGIEK 37 (40) Q Consensus 14 kkdfldniayhikekypfvlgiek 37 (40) -.+....++-+|.+++|+.|..|+ T Consensus 45 ~~d~~e~l~~~In~~~pl~LE~E~ 68 (103) T 1s5j_A 45 PKNSLENIIKWVKTTFNLDLEVDK 68 (103) T ss_dssp CHHHHHHHHHHHHHHSSCCEEEEE T ss_pred CCCHHHHHHHHHHHHCCHHHHHHC T ss_conf 854099999998752204544422 No 6 >>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} (D:) Probab=10.43 E-value=78 Score=15.70 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHCCCEEEEE Q ss_conf 4666555577642118568866 Q 537021.9.peg.6 14 KKDFLDNIAYHIKEKYPFVLGI 35 (40) Q Consensus 14 kkdfldniayhikekypfvlgi 35 (40) -+.++|.|--.|-|++|-.|-| T Consensus 42 LR~YID~il~~IvE~~P~lLEv 63 (64) T 2hv8_D 42 LQDYIDRIIVAIMETNPSILEV 63 (64) T ss_dssp HHHHHHHHHHHHHTTCGGGGBC T ss_pred HHHHHHHHHHHHHHCCCCHHCC T ss_conf 9999999999999739633204 No 7 >>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ... (A:) Probab=8.89 E-value=1.2e+02 Score=14.83 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 346665555776421185 Q 537021.9.peg.6 13 YKKDFLDNIAYHIKEKYP 30 (40) Q Consensus 13 ykkdfldniayhikekyp 30 (40) --||||+..---.+|||- T Consensus 108 TLkdFLerLk~imqekYs 125 (129) T 2d48_A 108 TLENFLERLKTIMREKYS 125 (129) T ss_dssp EHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 599999999999999876 No 8 >>1ujl_A Potassium voltage-gated channel subfamily H member 2; two helices, amphiphatic helix, membrane protein; NMR {Synthetic} (A:) Probab=8.51 E-value=1.3e+02 Score=14.56 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 346665555776421185 Q 537021.9.peg.6 13 YKKDFLDNIAYHIKEKYP 30 (40) Q Consensus 13 ykkdfldniayhikekyp 30 (40) .|-.+||+.|..|.+.|- T Consensus 12 ~kiGWLd~La~qi~k~Y~ 29 (42) T 1ujl_A 12 SRIGWLHNLGDQIGKPYN 29 (42) T ss_dssp CCCCTHHHHHHHHCCSSC T ss_pred CCCCHHHHHHHHHCCCCC T ss_conf 752279999999668655 No 9 >>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (T:) Probab=8.39 E-value=1.6e+02 Score=14.21 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 023466655557764211 Q 537021.9.peg.6 11 TVYKKDFLDNIAYHIKEK 28 (40) Q Consensus 11 tvykkdfldniayhikek 28 (40) |---..+||+||..|.++ T Consensus 122 T~~G~~~lD~iA~~v~~~ 139 (141) T 3jyv_T 122 SENGQRDLDRIAAQTLEE 139 (141) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 987899999999998862 No 10 >>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} (A:1-37) Probab=7.91 E-value=1.6e+02 Score=14.16 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHH-----HHHCCCEE Q ss_conf 02346665555776-----42118568 Q 537021.9.peg.6 11 TVYKKDFLDNIAYH-----IKEKYPFV 32 (40) Q Consensus 11 tvykkdfldniayh-----ikekypfv 32 (40) |--|-+|||.||-- ++-|.|.| T Consensus 5 tRVkLnfLdqiaKfWelQGs~lKIP~v 31 (37) T 2jxj_A 5 SRVRLDFLDQLAKFWELQGSTLKIPVV 31 (37) T ss_dssp SHHHHHHHHHHHHHHHHHTCCCCCCEE T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 106999999999999995998979858 Done!