Query         537021.9.peg.658_1
Match_columns 40
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 00:12:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_658.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2hv8_D RAB11 family-interactin   9.9      59  0.0025   15.6   0.4   22   14-35     42-63  (64)
  2 2c0n_A A197; thermophilic prot   8.1      44  0.0019   16.2  -0.9   14    8-21     95-108 (203)
  3 2qv6_A MJ0145, GTP cyclohydrol   6.9 1.7E+02  0.0071   13.3   3.4   37    2-38    175-219 (268)
  4 2d48_A Interleukin-4; four hel   6.7 1.2E+02  0.0051   14.0   0.8   18   13-30    108-125 (129)
  5 1htr_P Progastricsin (Pro segm   6.4      91  0.0038   14.6   0.0   18   14-31     23-40  (43)
  6 3jyv_T S19E protein; eukaryoti   6.1 1.7E+02   0.007   13.3   1.3   18   11-28    122-139 (141)
  7 3aez_A Pantothenate kinase; tr   5.1   2E+02  0.0082   13.0   1.1   13   26-38     86-98  (312)
  8 3fwb_B Nuclear mRNA export pro   4.7 2.2E+02  0.0094   12.7   1.1   15   10-24      3-17  (55)
  9 2v7f_A RPS19, RPS19E SSU ribos   4.3 2.5E+02   0.011   12.4   1.3   18   11-28    122-139 (150)
 10 1ujl_A Potassium voltage-gated   4.2 2.3E+02  0.0097   12.6   0.9   13   17-29     16-28  (42)

No 1  
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=9.94  E-value=59  Score=15.56  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             4666555577642118568866
Q 537021.9.peg.6   14 KKDFLDNIAYHIKEKYPFVLGI   35 (40)
Q Consensus        14 kkdfldniayhikekypfvlgi   35 (40)
                      -++++|.|--.|-|++|-.|-|
T Consensus        42 LR~YID~Ill~I~E~~P~iLEI   63 (64)
T 2hv8_D           42 LQDYIDRIIVAIMETNPSILEV   63 (64)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGBC
T ss_pred             HHHHHHHHHHHHHHCCCCHHCC
T ss_conf             9999999999999739425307


No 2  
>2c0n_A A197; thermophilic protein, thermophilic virus, STIV; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=8.12  E-value=44  Score=16.19  Aligned_cols=14  Identities=43%  Similarity=0.956  Sum_probs=6.9

Q ss_pred             ECCHHHHHHHHHHH
Q ss_conf             02002346665555
Q 537021.9.peg.6    8 GGFTVYKKDFLDNI   21 (40)
Q Consensus         8 ggftvykkdfldni   21 (40)
                      .|+.||.||++..|
T Consensus        95 ~gysvy~kdw~~ei  108 (203)
T 2c0n_A           95 RGYSVYRKDWEKEI  108 (203)
T ss_dssp             SSBSEESSSBCSSC
T ss_pred             CCEEEEHHHHHHHH
T ss_conf             57077713456676


No 3  
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=6.88  E-value=1.7e+02  Score=13.27  Aligned_cols=37  Identities=27%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             CEEEEEEC--CHHH----HHHHHHHHHHHHHH--CCCEEEEEECC
Q ss_conf             10356302--0023----46665555776421--18568866224
Q 537021.9.peg.6    2 SCAFFFGG--FTVY----KKDFLDNIAYHIKE--KYPFVLGIEKS   38 (40)
Q Consensus         2 scafffgg--ftvy----kkdfldniayhike--kypfvlgieks   38 (40)
                      |-+||.||  |-+.    .++-+..+..||++  ...+-.||-.+
T Consensus       175 ~L~Ff~GGDN~m~v~~~~~~~~~~d~i~~i~~~~~i~LkvGIG~g  219 (268)
T 2qv6_A          175 ALLFFIGGDNFMAPSNGMSEEDFLDIFNRINKKYKIELKAGIGIG  219 (268)
T ss_dssp             CCCEEEETTEEEEECTTCCHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred             CEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf             889972585699988997677899999987765083289865568


No 4  
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=6.68  E-value=1.2e+02  Score=14.02  Aligned_cols=18  Identities=28%  Similarity=0.591  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             346665555776421185
Q 537021.9.peg.6   13 YKKDFLDNIAYHIKEKYP   30 (40)
Q Consensus        13 ykkdfldniayhikekyp   30 (40)
                      --||||...---.+|||-
T Consensus       108 tLkDFLerLKtImqekYs  125 (129)
T 2d48_A          108 TLENFLERLKTIMREKYS  125 (129)
T ss_dssp             EHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             199999999999999876


No 5  
>1htr_P Progastricsin (Pro segment); aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_P
Probab=6.36  E-value=91  Score=14.63  Aligned_cols=18  Identities=33%  Similarity=0.484  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHCCCE
Q ss_conf             466655557764211856
Q 537021.9.peg.6   14 KKDFLDNIAYHIKEKYPF   31 (40)
Q Consensus        14 kkdfldniayhikekypf   31 (40)
                      -+|||.+-.|..-.||-|
T Consensus        23 L~dFLk~h~y~pa~Ky~f   40 (43)
T 1htr_P           23 LGEFLRTHKYDPAWKYRF   40 (43)
T ss_dssp             HHHHHTTCCCCGGGGGCC
T ss_pred             HHHHHHHCCCCHHHHCCC
T ss_conf             999998769985763057


No 6  
>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=6.08  E-value=1.7e+02  Score=13.30  Aligned_cols=18  Identities=28%  Similarity=0.193  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             023466655557764211
Q 537021.9.peg.6   11 TVYKKDFLDNIAYHIKEK   28 (40)
Q Consensus        11 tvykkdfldniayhikek   28 (40)
                      |---..+||+||..|.++
T Consensus       122 T~~G~~~LD~iA~~v~~e  139 (141)
T 3jyv_T          122 SENGQRDLDRIAAQTLEE  139 (141)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             987899999999999861


No 7  
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=5.08  E-value=2e+02  Score=12.95  Aligned_cols=13  Identities=31%  Similarity=0.782  Sum_probs=9.1

Q ss_pred             HHCCCEEEEEECC
Q ss_conf             2118568866224
Q 537021.9.peg.6   26 KEKYPFVLGIEKS   38 (40)
Q Consensus        26 kekypfvlgieks   38 (40)
                      +.+-||++||--+
T Consensus        86 ~~~~PfIIGIaG~   98 (312)
T 3aez_A           86 DRPVPFIIGVAGS   98 (312)
T ss_dssp             SSCCCEEEEEECC
T ss_pred             CCCCCEEEEEECC
T ss_conf             8999889998898


No 8  
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.50A {Saccharomyces cerevisiae}
Probab=4.66  E-value=2.2e+02  Score=12.68  Aligned_cols=15  Identities=33%  Similarity=0.658  Sum_probs=11.0

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             002346665555776
Q 537021.9.peg.6   10 FTVYKKDFLDNIAYH   24 (40)
Q Consensus        10 ftvykkdfldniayh   24 (40)
                      -.-|.+||.|..+-.
T Consensus         3 eanyR~~FID~~~~E   17 (55)
T 3fwb_B            3 EANYRKDFIDTMTRE   17 (55)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             010888899999999


No 9  
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=4.31  E-value=2.5e+02  Score=12.41  Aligned_cols=18  Identities=39%  Similarity=0.565  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             023466655557764211
Q 537021.9.peg.6   11 TVYKKDFLDNIAYHIKEK   28 (40)
Q Consensus        11 tvykkdfldniayhikek   28 (40)
                      |---..+||+||..|.++
T Consensus       122 T~~Gq~~LD~iA~~v~~~  139 (150)
T 2v7f_A          122 TPKGRSFLDKIATELKKE  139 (150)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             988899999999999999


No 10 
>1ujl_A Potassium voltage-gated channel subfamily H member 2; two helices, amphiphatic helix, membrane protein; NMR {Synthetic} SCOP: j.12.1.1
Probab=4.21  E-value=2.3e+02  Score=12.60  Aligned_cols=13  Identities=31%  Similarity=0.636  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             6555577642118
Q 537021.9.peg.6   17 FLDNIAYHIKEKY   29 (40)
Q Consensus        17 fldniayhikeky   29 (40)
                      .||+.|.+|.+.|
T Consensus        16 WLd~La~~i~~pY   28 (42)
T 1ujl_A           16 WLHNLGDQIGKPY   28 (42)
T ss_dssp             THHHHHHHHCCSS
T ss_pred             HHHHHHHHHCCCC
T ss_conf             7999999975765


Done!