Query 537021.9.peg.658_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 00:12:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_658.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2hv8_D RAB11 family-interactin 9.9 59 0.0025 15.6 0.4 22 14-35 42-63 (64) 2 2c0n_A A197; thermophilic prot 8.1 44 0.0019 16.2 -0.9 14 8-21 95-108 (203) 3 2qv6_A MJ0145, GTP cyclohydrol 6.9 1.7E+02 0.0071 13.3 3.4 37 2-38 175-219 (268) 4 2d48_A Interleukin-4; four hel 6.7 1.2E+02 0.0051 14.0 0.8 18 13-30 108-125 (129) 5 1htr_P Progastricsin (Pro segm 6.4 91 0.0038 14.6 0.0 18 14-31 23-40 (43) 6 3jyv_T S19E protein; eukaryoti 6.1 1.7E+02 0.007 13.3 1.3 18 11-28 122-139 (141) 7 3aez_A Pantothenate kinase; tr 5.1 2E+02 0.0082 13.0 1.1 13 26-38 86-98 (312) 8 3fwb_B Nuclear mRNA export pro 4.7 2.2E+02 0.0094 12.7 1.1 15 10-24 3-17 (55) 9 2v7f_A RPS19, RPS19E SSU ribos 4.3 2.5E+02 0.011 12.4 1.3 18 11-28 122-139 (150) 10 1ujl_A Potassium voltage-gated 4.2 2.3E+02 0.0097 12.6 0.9 13 17-29 16-28 (42) No 1 >2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1 Probab=9.94 E-value=59 Score=15.56 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHCCCEEEEE Q ss_conf 4666555577642118568866 Q 537021.9.peg.6 14 KKDFLDNIAYHIKEKYPFVLGI 35 (40) Q Consensus 14 kkdfldniayhikekypfvlgi 35 (40) -++++|.|--.|-|++|-.|-| T Consensus 42 LR~YID~Ill~I~E~~P~iLEI 63 (64) T 2hv8_D 42 LQDYIDRIIVAIMETNPSILEV 63 (64) T ss_dssp HHHHHHHHHHHHHTTCGGGGBC T ss_pred HHHHHHHHHHHHHHCCCCHHCC T ss_conf 9999999999999739425307 No 2 >2c0n_A A197; thermophilic protein, thermophilic virus, STIV; 1.86A {Sulfolobus turreted icosahedral virus} Probab=8.12 E-value=44 Score=16.19 Aligned_cols=14 Identities=43% Similarity=0.956 Sum_probs=6.9 Q ss_pred ECCHHHHHHHHHHH Q ss_conf 02002346665555 Q 537021.9.peg.6 8 GGFTVYKKDFLDNI 21 (40) Q Consensus 8 ggftvykkdfldni 21 (40) .|+.||.||++..| T Consensus 95 ~gysvy~kdw~~ei 108 (203) T 2c0n_A 95 RGYSVYRKDWEKEI 108 (203) T ss_dssp SSBSEESSSBCSSC T ss_pred CCEEEEHHHHHHHH T ss_conf 57077713456676 No 3 >2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} Probab=6.88 E-value=1.7e+02 Score=13.27 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=22.2 Q ss_pred CEEEEEEC--CHHH----HHHHHHHHHHHHHH--CCCEEEEEECC Q ss_conf 10356302--0023----46665555776421--18568866224 Q 537021.9.peg.6 2 SCAFFFGG--FTVY----KKDFLDNIAYHIKE--KYPFVLGIEKS 38 (40) Q Consensus 2 scafffgg--ftvy----kkdfldniayhike--kypfvlgieks 38 (40) |-+||.|| |-+. .++-+..+..||++ ...+-.||-.+ T Consensus 175 ~L~Ff~GGDN~m~v~~~~~~~~~~d~i~~i~~~~~i~LkvGIG~g 219 (268) T 2qv6_A 175 ALLFFIGGDNFMAPSNGMSEEDFLDIFNRINKKYKIELKAGIGIG 219 (268) T ss_dssp CCCEEEETTEEEEECTTCCHHHHHHHHHHHHHHHCCCEEEEEEEE T ss_pred CEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCC T ss_conf 889972585699988997677899999987765083289865568 No 4 >2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ... Probab=6.68 E-value=1.2e+02 Score=14.02 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 346665555776421185 Q 537021.9.peg.6 13 YKKDFLDNIAYHIKEKYP 30 (40) Q Consensus 13 ykkdfldniayhikekyp 30 (40) --||||...---.+|||- T Consensus 108 tLkDFLerLKtImqekYs 125 (129) T 2d48_A 108 TLENFLERLKTIMREKYS 125 (129) T ss_dssp EHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 199999999999999876 No 5 >1htr_P Progastricsin (Pro segment); aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_P Probab=6.36 E-value=91 Score=14.63 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHCCCE Q ss_conf 466655557764211856 Q 537021.9.peg.6 14 KKDFLDNIAYHIKEKYPF 31 (40) Q Consensus 14 kkdfldniayhikekypf 31 (40) -+|||.+-.|..-.||-| T Consensus 23 L~dFLk~h~y~pa~Ky~f 40 (43) T 1htr_P 23 LGEFLRTHKYDPAWKYRF 40 (43) T ss_dssp HHHHHTTCCCCGGGGGCC T ss_pred HHHHHHHCCCCHHHHCCC T ss_conf 999998769985763057 No 6 >3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} Probab=6.08 E-value=1.7e+02 Score=13.30 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 023466655557764211 Q 537021.9.peg.6 11 TVYKKDFLDNIAYHIKEK 28 (40) Q Consensus 11 tvykkdfldniayhikek 28 (40) |---..+||+||..|.++ T Consensus 122 T~~G~~~LD~iA~~v~~e 139 (141) T 3jyv_T 122 SENGQRDLDRIAAQTLEE 139 (141) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 987899999999999861 No 7 >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* Probab=5.08 E-value=2e+02 Score=12.95 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=9.1 Q ss_pred HHCCCEEEEEECC Q ss_conf 2118568866224 Q 537021.9.peg.6 26 KEKYPFVLGIEKS 38 (40) Q Consensus 26 kekypfvlgieks 38 (40) +.+-||++||--+ T Consensus 86 ~~~~PfIIGIaG~ 98 (312) T 3aez_A 86 DRPVPFIIGVAGS 98 (312) T ss_dssp SSCCCEEEEEECC T ss_pred CCCCCEEEEEECC T ss_conf 8999889998898 No 8 >3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.50A {Saccharomyces cerevisiae} Probab=4.66 E-value=2.2e+02 Score=12.68 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=11.0 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 002346665555776 Q 537021.9.peg.6 10 FTVYKKDFLDNIAYH 24 (40) Q Consensus 10 ftvykkdfldniayh 24 (40) -.-|.+||.|..+-. T Consensus 3 eanyR~~FID~~~~E 17 (55) T 3fwb_B 3 EANYRKDFIDTMTRE 17 (55) T ss_dssp HHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH T ss_conf 010888899999999 No 9 >2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84 Probab=4.31 E-value=2.5e+02 Score=12.41 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 023466655557764211 Q 537021.9.peg.6 11 TVYKKDFLDNIAYHIKEK 28 (40) Q Consensus 11 tvykkdfldniayhikek 28 (40) |---..+||+||..|.++ T Consensus 122 T~~Gq~~LD~iA~~v~~~ 139 (150) T 2v7f_A 122 TPKGRSFLDKIATELKKE 139 (150) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 988899999999999999 No 10 >1ujl_A Potassium voltage-gated channel subfamily H member 2; two helices, amphiphatic helix, membrane protein; NMR {Synthetic} SCOP: j.12.1.1 Probab=4.21 E-value=2.3e+02 Score=12.60 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCC Q ss_conf 6555577642118 Q 537021.9.peg.6 17 FLDNIAYHIKEKY 29 (40) Q Consensus 17 fldniayhikeky 29 (40) .||+.|.+|.+.| T Consensus 16 WLd~La~~i~~pY 28 (42) T 1ujl_A 16 WLHNLGDQIGKPY 28 (42) T ss_dssp THHHHHHHHCCSS T ss_pred HHHHHHHHHCCCC T ss_conf 7999999975765 Done!