RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.658_1
         (40 letters)



>gnl|CDD|38941 KOG3737, KOG3737, KOG3737, Predicted polypeptide
           N-acetylgalactosaminyltransferase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 603

 Score = 24.6 bits (53), Expect = 6.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 17  FLDNIAYHIKEKYP 30
           F++ IAY +   YP
Sbjct: 460 FMEEIAYDVTSHYP 473


>gnl|CDD|36749 KOG1536, KOG1536, KOG1536, Biotin holocarboxylase
           synthetase/biotin-protein ligase [Coenzyme transport and
           metabolism].
          Length = 649

 Score = 24.2 bits (52), Expect = 7.1
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 4   AFFFGGFTVYKKDFLDNIAYHIKEKY 29
           A  F  F  Y K F+D     I   Y
Sbjct: 557 AAVFNKFEKYFKLFMDQGPKSILPLY 582


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.328    0.146    0.455 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 540,032
Number of extensions: 16401
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 6
Length of query: 40
Length of database: 6,263,737
Length adjustment: 14
Effective length of query: 26
Effective length of database: 5,961,211
Effective search space: 154991486
Effective search space used: 154991486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)