RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.683_1
         (37 letters)



>gnl|CDD|144523 pfam00956, NAP, Nucleosome assembly protein (NAP).  NAP proteins
           are involved in moving histones into the nucleus,
           nucleosome assembly and chromatin fluidity. They affect
           the transcription of many genes.
          Length = 237

 Score = 23.9 bits (52), Expect = 10.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 9   KSFSLIFQFTINEY 22
           K F LIF F  N Y
Sbjct: 109 KGFKLIFHFAPNPY 122


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 397,549
Number of extensions: 9282
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 37
Length of database: 6,263,737
Length adjustment: 11
Effective length of query: 26
Effective length of database: 6,026,038
Effective search space: 156676988
Effective search space used: 156676988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)