RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.683_1 (37 letters) >gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional. Length = 391 Score = 25.9 bits (57), Expect = 2.6 Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 18 TINEYCRSNRNSITFSSGEI 37 TIN YC S SI + + I Sbjct: 85 TINRYCSSGLQSIAYGAERI 104 >gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008 Score = 25.2 bits (55), Expect = 3.7 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 12 SLIFQFTINEYCRSNRNSITFSSGEI 37 SL Q IN++C S I F S ++ Sbjct: 120 SLPLQKEINDFCHSQCPPIAFISADV 145 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.132 0.397 Gapped Lambda K H 0.267 0.0604 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 509,972 Number of extensions: 13990 Number of successful extensions: 44 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 3 Length of query: 37 Length of database: 5,994,473 Length adjustment: 11 Effective length of query: 26 Effective length of database: 5,756,785 Effective search space: 149676410 Effective search space used: 149676410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.3 bits)