RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.683_1
         (37 letters)



>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
          Length = 391

 Score = 25.9 bits (57), Expect = 2.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 18  TINEYCRSNRNSITFSSGEI 37
           TIN YC S   SI + +  I
Sbjct: 85  TINRYCSSGLQSIAYGAERI 104


>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1.  This model
           represents the full length, over a thousand amino acids,
           of a multicopy family of eukaryotic proteins, many of
           which are designated ubiquitin-activating enzyme E1.
           Members have two copies of the ThiF family domain
           (pfam00899), a repeat found in ubiquitin-activating
           proteins (pfam02134), and other regions.
          Length = 1008

 Score = 25.2 bits (55), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 12  SLIFQFTINEYCRSNRNSITFSSGEI 37
           SL  Q  IN++C S    I F S ++
Sbjct: 120 SLPLQKEINDFCHSQCPPIAFISADV 145


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 509,972
Number of extensions: 13990
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 3
Length of query: 37
Length of database: 5,994,473
Length adjustment: 11
Effective length of query: 26
Effective length of database: 5,756,785
Effective search space: 149676410
Effective search space used: 149676410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)