Query 537021.9.peg.691_1 Match_columns 46 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 22:48:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_691.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bz1_H PSII-H, photosystem II 48.8 15 0.00044 18.5 2.8 22 17-38 36-57 (66) 2 >1xly_A SHE2P, SHE2, YKL130C; 19.9 38 0.0011 16.4 0.9 22 15-36 15-36 (234) 3 >1tdp_A Carnobacteriocin B2 im 11.5 80 0.0024 14.8 0.7 22 15-36 9-30 (70) 4 >3b8c_A ATPase 2, plasma membr 8.1 1.8E+02 0.0054 13.0 2.1 19 23-41 49-67 (122) 5 >1wz2_A Leucyl-tRNA synthetase 7.5 1.5E+02 0.0045 13.4 0.9 15 12-26 4-18 (94) 6 >3bz1_I Photosystem II reactio 6.7 2.2E+02 0.0064 12.6 2.2 27 18-44 11-37 (38) 7 >1uqw_A Putative binding prote 6.0 92 0.0027 14.5 -0.9 10 17-26 15-24 (29) 8 >1j5u_A Archease, possible cha 5.8 1.2E+02 0.0035 13.9 -0.4 12 5-16 111-122 (136) 9 >1req_B Methylmalonyl-COA muta 5.7 67 0.002 15.2 -1.8 14 8-21 64-77 (89) 10 >3i4g_A SUSD-like carbohydrate 5.2 1.7E+02 0.005 13.2 0.0 7 39-45 91-97 (105) No 1 >>3bz1_H PSII-H, photosystem II reaction center protein H; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_H* 2axt_H* 3bz2_H* 3a0b_H* 3a0h_H* (H:) Probab=48.77 E-value=15 Score=18.51 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCC Q ss_conf 6899999999974415666568 Q 537021.9.peg.6 17 PLFSRFISIYLLIFNSAIPIKN 38 (46) Q Consensus 17 plfsrfisiyllifnsaipikn 38 (46) -||.-|..|.|-|+||.+.+.+ T Consensus 36 ~Lf~vFl~IiLeiYNsSvlLdg 57 (66) T 3bz1_H 36 GLFLVFLLIILEIYNSTLILDG 57 (66) T ss_dssp HHHHHHHHHHHHHHTTSSCBTT T ss_pred HHHHHHHHHHHHHHCCCEEECC T ss_conf 9999999999999365325537 No 2 >>1xly_A SHE2P, SHE2, YKL130C; basic helical hairpin, five helix bundle, dimer, RNA- binding protein, RNA binding protein; 1.95A {Saccharomyces cerevisiae} (A:) Probab=19.95 E-value=38 Score=16.41 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=17.3 Q ss_pred ECHHHHHHHHHHHHHHCCCCCC Q ss_conf 0168999999999744156665 Q 537021.9.peg.6 15 ISPLFSRFISIYLLIFNSAIPI 36 (46) Q Consensus 15 isplfsrfisiyllifnsaipi 36 (46) +.++||++||-|.-+.|.-|.. T Consensus 15 ~~~~~s~YiS~yi~~LNkyI~~ 36 (234) T 1xly_A 15 ILALLSRYLSSYIHVLNKFISH 36 (234) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999 No 3 >>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} (A:42-111) Probab=11.49 E-value=80 Score=14.80 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=17.3 Q ss_pred ECHHHHHHHHHHHHHHCCCCCC Q ss_conf 0168999999999744156665 Q 537021.9.peg.6 15 ISPLFSRFISIYLLIFNSAIPI 36 (46) Q Consensus 15 isplfsrfisiyllifnsaipi 36 (46) .-.+.||-||-|.|+...+||- T Consensus 9 vvt~LS~~ISkYYL~H~~~iP~ 30 (70) T 1tdp_A 9 VISLLSRGISSYYLSHKRIIPS 30 (70) T ss_dssp HHHHHHHHHHHTCTTSCCCCCG T ss_pred HHHHHHCCHHHHHHHHCCCCCH T ss_conf 9999831247788774011859 No 4 >>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} (A:226-287,A:343-388,A:656-669) Probab=8.12 E-value=1.8e+02 Score=12.99 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=13.3 Q ss_pred HHHHHHHHCCCCCCCCCCC Q ss_conf 9999974415666568872 Q 537021.9.peg.6 23 ISIYLLIFNSAIPIKNPIP 41 (46) Q Consensus 23 isiyllifnsaipiknpip 41 (46) +.--|..+-.+||+||-|. T Consensus 49 L~FaLVLLVAsIPVk~~ie 67 (122) T 3b8c_A 49 IDNLLVLLIGGIPIKNLVE 67 (122) T ss_dssp HHHHHHHTTTTCCSSCCCC T ss_pred HHHHHHHHHCCCHHEEEEE T ss_conf 9999987411202421220 No 5 >>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3} (A:149-174,A:535-602) Probab=7.50 E-value=1.5e+02 Score=13.38 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=11.1 Q ss_pred CEEECHHHHHHHHHH Q ss_conf 213016899999999 Q 537021.9.peg.6 12 NISISPLFSRFISIY 26 (46) Q Consensus 12 nisisplfsrfisiy 26 (46) ..|..|-|||||.-- T Consensus 4 ~~~~~~~~~~~~~~~ 18 (94) T 1wz2_A 4 TTSLFPPFSKFIEWQ 18 (94) T ss_dssp CSTTSHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 358986899999999 No 6 >>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3a0b_I* 3a0h_I* (I:) Probab=6.66 E-value=2.2e+02 Score=12.61 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHC Q ss_conf 899999999974415666568872000 Q 537021.9.peg.6 18 LFSRFISIYLLIFNSAIPIKNPIPQSL 44 (46) Q Consensus 18 lfsrfisiyllifnsaipiknpipqsl 44 (46) ...-|+|++..-|-|.-|-.||-...+ T Consensus 11 vV~fFvslFiFGFLSnDP~RnP~rkd~ 37 (38) T 3bz1_I 11 VVTFFVLLFVFGFLSGDPARNPKRKDL 37 (38) T ss_dssp HHHHHHHHHHHHHHTTTTTSSSSCC-- T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 899999999886305898899886657 No 7 >>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} (A:57-72,A:148-160) Probab=5.97 E-value=92 Score=14.48 Aligned_cols=10 Identities=60% Similarity=0.889 Sum_probs=7.5 Q ss_pred HHHHHHHHHH Q ss_conf 6899999999 Q 537021.9.peg.6 17 PLFSRFISIY 26 (46) Q Consensus 17 plfsrfisiy 26 (46) -|||.||.|. T Consensus 15 vlfsafinil 24 (29) T 1uqw_A 15 VLFSAFINIL 24 (29) T ss_dssp SSCTTHHHHH T ss_pred HHCHHHHHHH T ss_conf 4513455554 No 8 >>1j5u_A Archease, possible chaperone; structural genomics, TM1083, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} (A:) Probab=5.78 E-value=1.2e+02 Score=13.93 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=5.5 Q ss_pred EEEEEEECEEEC Q ss_conf 886333121301 Q 537021.9.peg.6 5 VKVETYHNISIS 16 (46) Q Consensus 5 vkvetyhnisis 16 (46) ||.-|||+.+|. T Consensus 111 VKAvTyh~l~i~ 122 (136) T 1j5u_A 111 IKALTYHLLKFE 122 (136) T ss_dssp CCEECSTTCCCE T ss_pred EEEEEEEEEEEE T ss_conf 789661018999 No 9 >>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (B:1-89) Probab=5.70 E-value=67 Score=15.20 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=0.0 Q ss_pred EEEECEEECHHHHH Q ss_conf 33312130168999 Q 537021.9.peg.6 8 ETYHNISISPLFSR 21 (46) Q Consensus 8 etyhnisisplfsr 21 (46) .||..|.|.||+.+ T Consensus 64 ~T~eGi~vkPLYt~ 77 (89) T 1req_B 64 HTVDGIDIVPMYRP 77 (89) T ss_dssp ECTTCCEECSCCCG T ss_pred CCCCCCCCCCCCCH T ss_conf 18888806888682 No 10 >>3i4g_A SUSD-like carbohydrate binding protein BF1063; YP_210668.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343} (A:77-163,A:511-528) Probab=5.16 E-value=1.7e+02 Score=13.17 Aligned_cols=7 Identities=86% Similarity=1.141 Sum_probs=0.0 Q ss_pred CCCHHCC Q ss_conf 8720005 Q 537021.9.peg.6 39 PIPQSLQ 45 (46) Q Consensus 39 pipqslq 45 (46) |||||-| T Consensus 91 ~~~~~~~ 97 (105) T 3i4g_A 91 PIPQSEQ 97 (105) T ss_dssp CCCHHHH T ss_pred CCCHHHH T ss_conf 8899999 Done!