Query         537021.9.peg.691_1
Match_columns 46
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Tue May 24 22:48:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_691.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bz1_H PSII-H, photosystem II  48.8      15 0.00044   18.5   2.8   22   17-38     36-57  (66)
  2 >1xly_A SHE2P, SHE2, YKL130C;   19.9      38  0.0011   16.4   0.9   22   15-36     15-36  (234)
  3 >1tdp_A Carnobacteriocin B2 im  11.5      80  0.0024   14.8   0.7   22   15-36      9-30  (70)
  4 >3b8c_A ATPase 2, plasma membr   8.1 1.8E+02  0.0054   13.0   2.1   19   23-41     49-67  (122)
  5 >1wz2_A Leucyl-tRNA synthetase   7.5 1.5E+02  0.0045   13.4   0.9   15   12-26      4-18  (94)
  6 >3bz1_I Photosystem II reactio   6.7 2.2E+02  0.0064   12.6   2.2   27   18-44     11-37  (38)
  7 >1uqw_A Putative binding prote   6.0      92  0.0027   14.5  -0.9   10   17-26     15-24  (29)
  8 >1j5u_A Archease, possible cha   5.8 1.2E+02  0.0035   13.9  -0.4   12    5-16    111-122 (136)
  9 >1req_B Methylmalonyl-COA muta   5.7      67   0.002   15.2  -1.8   14    8-21     64-77  (89)
 10 >3i4g_A SUSD-like carbohydrate   5.2 1.7E+02   0.005   13.2   0.0    7   39-45     91-97  (105)

No 1  
>>3bz1_H PSII-H, photosystem II reaction center protein H; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_H* 2axt_H* 3bz2_H* 3a0b_H* 3a0h_H* (H:)
Probab=48.77  E-value=15  Score=18.51  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             6899999999974415666568
Q 537021.9.peg.6   17 PLFSRFISIYLLIFNSAIPIKN   38 (46)
Q Consensus        17 plfsrfisiyllifnsaipikn   38 (46)
                      -||.-|..|.|-|+||.+.+.+
T Consensus        36 ~Lf~vFl~IiLeiYNsSvlLdg   57 (66)
T 3bz1_H           36 GLFLVFLLIILEIYNSTLILDG   57 (66)
T ss_dssp             HHHHHHHHHHHHHHTTSSCBTT
T ss_pred             HHHHHHHHHHHHHHCCCEEECC
T ss_conf             9999999999999365325537


No 2  
>>1xly_A SHE2P, SHE2, YKL130C; basic helical hairpin, five helix bundle, dimer, RNA- binding protein, RNA binding protein; 1.95A {Saccharomyces cerevisiae} (A:)
Probab=19.95  E-value=38  Score=16.41  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=17.3

Q ss_pred             ECHHHHHHHHHHHHHHCCCCCC
Q ss_conf             0168999999999744156665
Q 537021.9.peg.6   15 ISPLFSRFISIYLLIFNSAIPI   36 (46)
Q Consensus        15 isplfsrfisiyllifnsaipi   36 (46)
                      +.++||++||-|.-+.|.-|..
T Consensus        15 ~~~~~s~YiS~yi~~LNkyI~~   36 (234)
T 1xly_A           15 ILALLSRYLSSYIHVLNKFISH   36 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999


No 3  
>>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} (A:42-111)
Probab=11.49  E-value=80  Score=14.80  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=17.3

Q ss_pred             ECHHHHHHHHHHHHHHCCCCCC
Q ss_conf             0168999999999744156665
Q 537021.9.peg.6   15 ISPLFSRFISIYLLIFNSAIPI   36 (46)
Q Consensus        15 isplfsrfisiyllifnsaipi   36 (46)
                      .-.+.||-||-|.|+...+||-
T Consensus         9 vvt~LS~~ISkYYL~H~~~iP~   30 (70)
T 1tdp_A            9 VISLLSRGISSYYLSHKRIIPS   30 (70)
T ss_dssp             HHHHHHHHHHHTCTTSCCCCCG
T ss_pred             HHHHHHCCHHHHHHHHCCCCCH
T ss_conf             9999831247788774011859


No 4  
>>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} (A:226-287,A:343-388,A:656-669)
Probab=8.12  E-value=1.8e+02  Score=12.99  Aligned_cols=19  Identities=37%  Similarity=0.585  Sum_probs=13.3

Q ss_pred             HHHHHHHHCCCCCCCCCCC
Q ss_conf             9999974415666568872
Q 537021.9.peg.6   23 ISIYLLIFNSAIPIKNPIP   41 (46)
Q Consensus        23 isiyllifnsaipiknpip   41 (46)
                      +.--|..+-.+||+||-|.
T Consensus        49 L~FaLVLLVAsIPVk~~ie   67 (122)
T 3b8c_A           49 IDNLLVLLIGGIPIKNLVE   67 (122)
T ss_dssp             HHHHHHHTTTTCCSSCCCC
T ss_pred             HHHHHHHHHCCCHHEEEEE
T ss_conf             9999987411202421220


No 5  
>>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3} (A:149-174,A:535-602)
Probab=7.50  E-value=1.5e+02  Score=13.38  Aligned_cols=15  Identities=40%  Similarity=0.600  Sum_probs=11.1

Q ss_pred             CEEECHHHHHHHHHH
Q ss_conf             213016899999999
Q 537021.9.peg.6   12 NISISPLFSRFISIY   26 (46)
Q Consensus        12 nisisplfsrfisiy   26 (46)
                      ..|..|-|||||.--
T Consensus         4 ~~~~~~~~~~~~~~~   18 (94)
T 1wz2_A            4 TTSLFPPFSKFIEWQ   18 (94)
T ss_dssp             CSTTSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             358986899999999


No 6  
>>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3a0b_I* 3a0h_I* (I:)
Probab=6.66  E-value=2.2e+02  Score=12.61  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf             899999999974415666568872000
Q 537021.9.peg.6   18 LFSRFISIYLLIFNSAIPIKNPIPQSL   44 (46)
Q Consensus        18 lfsrfisiyllifnsaipiknpipqsl   44 (46)
                      ...-|+|++..-|-|.-|-.||-...+
T Consensus        11 vV~fFvslFiFGFLSnDP~RnP~rkd~   37 (38)
T 3bz1_I           11 VVTFFVLLFVFGFLSGDPARNPKRKDL   37 (38)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSSSSCC--
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             899999999886305898899886657


No 7  
>>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} (A:57-72,A:148-160)
Probab=5.97  E-value=92  Score=14.48  Aligned_cols=10  Identities=60%  Similarity=0.889  Sum_probs=7.5

Q ss_pred             HHHHHHHHHH
Q ss_conf             6899999999
Q 537021.9.peg.6   17 PLFSRFISIY   26 (46)
Q Consensus        17 plfsrfisiy   26 (46)
                      -|||.||.|.
T Consensus        15 vlfsafinil   24 (29)
T 1uqw_A           15 VLFSAFINIL   24 (29)
T ss_dssp             SSCTTHHHHH
T ss_pred             HHCHHHHHHH
T ss_conf             4513455554


No 8  
>>1j5u_A Archease, possible chaperone; structural genomics, TM1083, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} (A:)
Probab=5.78  E-value=1.2e+02  Score=13.93  Aligned_cols=12  Identities=33%  Similarity=0.584  Sum_probs=5.5

Q ss_pred             EEEEEEECEEEC
Q ss_conf             886333121301
Q 537021.9.peg.6    5 VKVETYHNISIS   16 (46)
Q Consensus         5 vkvetyhnisis   16 (46)
                      ||.-|||+.+|.
T Consensus       111 VKAvTyh~l~i~  122 (136)
T 1j5u_A          111 IKALTYHLLKFE  122 (136)
T ss_dssp             CCEECSTTCCCE
T ss_pred             EEEEEEEEEEEE
T ss_conf             789661018999


No 9  
>>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (B:1-89)
Probab=5.70  E-value=67  Score=15.20  Aligned_cols=14  Identities=29%  Similarity=0.584  Sum_probs=0.0

Q ss_pred             EEEECEEECHHHHH
Q ss_conf             33312130168999
Q 537021.9.peg.6    8 ETYHNISISPLFSR   21 (46)
Q Consensus         8 etyhnisisplfsr   21 (46)
                      .||..|.|.||+.+
T Consensus        64 ~T~eGi~vkPLYt~   77 (89)
T 1req_B           64 HTVDGIDIVPMYRP   77 (89)
T ss_dssp             ECTTCCEECSCCCG
T ss_pred             CCCCCCCCCCCCCH
T ss_conf             18888806888682


No 10 
>>3i4g_A SUSD-like carbohydrate binding protein BF1063; YP_210668.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343} (A:77-163,A:511-528)
Probab=5.16  E-value=1.7e+02  Score=13.17  Aligned_cols=7  Identities=86%  Similarity=1.141  Sum_probs=0.0

Q ss_pred             CCCHHCC
Q ss_conf             8720005
Q 537021.9.peg.6   39 PIPQSLQ   45 (46)
Q Consensus        39 pipqslq   45 (46)
                      |||||-|
T Consensus        91 ~~~~~~~   97 (105)
T 3i4g_A           91 PIPQSEQ   97 (105)
T ss_dssp             CCCHHHH
T ss_pred             CCCHHHH
T ss_conf             8899999


Done!