Query 537021.9.peg.691_1
Match_columns 46
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 01:22:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_691.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bz1_H PSII-H, photosystem II 48.9 10 0.00043 18.5 2.8 22 17-38 36-57 (66)
2 1xly_A SHE2P, SHE2, YKL130C; b 24.4 19 0.00081 17.1 0.9 23 14-36 14-36 (234)
3 1tdp_A Carnobacteriocin B2 imm 8.9 79 0.0033 14.0 0.7 22 15-36 50-71 (111)
4 3bz1_I Photosystem II reaction 8.6 1.2E+02 0.0051 13.1 2.1 27 18-44 11-37 (38)
5 2w7z_A EFSQNR, pentapeptide re 5.0 1.7E+02 0.0073 12.3 0.8 13 32-44 2-14 (214)
6 1w1w_E SCC1, sister chromatid 4.7 90 0.0038 13.8 -0.8 15 8-22 103-120 (121)
7 3bqa_A Sensor protein PHOQ; hi 4.6 1.6E+02 0.0066 12.5 0.3 30 3-45 115-144 (148)
8 1zkd_A DUF185; X-RAY, NESG, RP 4.3 2.2E+02 0.0092 11.8 1.5 22 10-31 52-73 (387)
9 1j5u_A Archease, possible chap 3.9 1.4E+02 0.0057 12.9 -0.4 13 5-17 111-123 (136)
10 1x5v_A PCFK1; inhibitory cysti 3.9 1.9E+02 0.0078 12.2 0.3 13 34-46 12-24 (34)
No 1
>3bz1_H PSII-H, photosystem II reaction center protein H; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_H* 2axt_H* 3bz2_H* 3kzi_H* 3a0b_H* 3a0h_H*
Probab=48.91 E-value=10 Score=18.53 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6899999999974415666568
Q 537021.9.peg.6 17 PLFSRFISIYLLIFNSAIPIKN 38 (46)
Q Consensus 17 plfsrfisiyllifnsaipikn 38 (46)
-||.-|..|.|-|+||.+.+.+
T Consensus 36 ~Lf~vFl~IiLeiYNssvlLdg 57 (66)
T 3bz1_H 36 GLFLVFLLIILEIYNSTLILDG 57 (66)
T ss_dssp HHHHHHHHHHHHHHTTSSCBTT
T ss_pred HHHHHHHHHHHHHHCCCEEECC
T ss_conf 9999999999999365325537
No 2
>1xly_A SHE2P, SHE2, YKL130C; basic helical hairpin, five helix bundle, dimer, RNA- binding protein, RNA binding protein; 1.95A {Saccharomyces cerevisiae} SCOP: a.232.1.1
Probab=24.41 E-value=19 Score=17.15 Aligned_cols=23 Identities=35% Similarity=0.597 Sum_probs=17.9
Q ss_pred EECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 30168999999999744156665
Q 537021.9.peg.6 14 SISPLFSRFISIYLLIFNSAIPI 36 (46)
Q Consensus 14 sisplfsrfisiyllifnsaipi 36 (46)
.+.++||++||-|.-+.|.-|..
T Consensus 14 qi~~~~s~YiS~yi~~LNkyI~~ 36 (234)
T 1xly_A 14 QILALLSRYLSSYIHVLNKFISH 36 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999
No 3
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=8.89 E-value=79 Score=14.04 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=17.4
Q ss_pred ECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0168999999999744156665
Q 537021.9.peg.6 15 ISPLFSRFISIYLLIFNSAIPI 36 (46)
Q Consensus 15 isplfsrfisiyllifnsaipi 36 (46)
.-.+.||-||-|.||...+||-
T Consensus 50 vvt~LS~~ISkYYL~H~~~iP~ 71 (111)
T 1tdp_A 50 VISLLSRGISSYYLSHKRIIPS 71 (111)
T ss_dssp HHHHHHHHHHHTCTTSCCCCCG
T ss_pred HHHHHHCCHHHHHHHHCCCCCH
T ss_conf 9999831247788774011859
No 4
>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3kzi_I* 3a0b_I* 3a0h_I*
Probab=8.57 E-value=1.2e+02 Score=13.10 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHC
Q ss_conf 899999999974415666568872000
Q 537021.9.peg.6 18 LFSRFISIYLLIFNSAIPIKNPIPQSL 44 (46)
Q Consensus 18 lfsrfisiyllifnsaipiknpipqsl 44 (46)
...-|+|++..-|-|.-|-.||--..+
T Consensus 11 vV~fFv~lFiFGFLSnDP~RnP~rkdl 37 (38)
T 3bz1_I 11 VVTFFVLLFVFGFLSGDPARNPKRKDL 37 (38)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSSCC--
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 899999999885305898899886557
No 5
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemical modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=5.05 E-value=1.7e+02 Score=12.32 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=8.5
Q ss_pred CCCCCCCCCCHHC
Q ss_conf 5666568872000
Q 537021.9.peg.6 32 SAIPIKNPIPQSL 44 (46)
Q Consensus 32 saipiknpipqsl 44 (46)
|..||.+|||-.+
T Consensus 2 ~~~~~~~p~~p~~ 14 (214)
T 2w7z_A 2 SHMXITYPLPPNL 14 (214)
T ss_dssp --CCSSCCCC---
T ss_pred CCCCCCCCCCCCC
T ss_conf 8655477889889
No 6
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57
Probab=4.72 E-value=90 Score=13.77 Aligned_cols=15 Identities=53% Similarity=0.966 Sum_probs=6.4
Q ss_pred EEEECEEECH---HHHHH
Q ss_conf 3331213016---89999
Q 537021.9.peg.6 8 ETYHNISISP---LFSRF 22 (46)
Q Consensus 8 etyhnisisp---lfsrf 22 (46)
+.|-+|.|++ ||++|
T Consensus 103 ~~~gdI~I~~~p~l~~~F 120 (121)
T 1w1w_E 103 EAFGNIKIDAKPALFERF 120 (121)
T ss_dssp STTCCEEEEECGGGC---
T ss_pred CCCCCEEEEECCHHHHHH
T ss_conf 886766886580577641
No 7
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=4.57 E-value=1.6e+02 Score=12.54 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=16.7
Q ss_pred EEEEEEEEECEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHCC
Q ss_conf 7888633312130168999999999744156665688720005
Q 537021.9.peg.6 3 MSVKVETYHNISISPLFSRFISIYLLIFNSAIPIKNPIPQSLQ 45 (46)
Q Consensus 3 msvkvetyhnisisplfsrfisiyllifnsaipiknpipqslq 45 (46)
-||.|..|..-.--|- -.|-+-.+|||.||
T Consensus 115 HSVaVN~Y~AT~~lP~-------------LTIVVVDtIPqeLq 144 (148)
T 3bqa_A 115 HSVAVNVYPATSRMPK-------------LTIVVVDTIPVELK 144 (148)
T ss_dssp EEEEEEEECCCSSSCC-------------EEEEEECSSCGGGC
T ss_pred EEEEEECCCCCCCCCC-------------EEEEEECCCCHHHH
T ss_conf 8899853447567986-------------08999607888973
No 8
>1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52
Probab=4.31 E-value=2.2e+02 Score=11.80 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=16.2
Q ss_pred EECEEECHHHHHHHHHHHHHHC
Q ss_conf 3121301689999999997441
Q 537021.9.peg.6 10 YHNISISPLFSRFISIYLLIFN 31 (46)
Q Consensus 10 yhnisisplfsrfisiyllifn 31 (46)
|..-+|||+|.+.|..++.-.-
T Consensus 52 ~TSpeis~~FG~~ia~~~~~~~ 73 (387)
T 1zkd_A 52 TTSPEISQMFGELLGLWSASVW 73 (387)
T ss_dssp CSHHHHCHHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHH
T ss_conf 6874057999999999999999
No 9
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=3.90 E-value=1.4e+02 Score=12.85 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=0.0
Q ss_pred EEEEEEECEEECH
Q ss_conf 8863331213016
Q 537021.9.peg.6 5 VKVETYHNISISP 17 (46)
Q Consensus 5 vkvetyhnisisp 17 (46)
||--|||+..|.+
T Consensus 111 VKAvTyh~l~v~~ 123 (136)
T 1j5u_A 111 IKALTYHLLKFER 123 (136)
T ss_dssp CCEECSTTCCCEE
T ss_pred EEEEEECCEEEEE
T ss_conf 5785503279999
No 10
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=3.90 E-value=1.9e+02 Score=12.17 Aligned_cols=13 Identities=46% Similarity=0.991 Sum_probs=0.0
Q ss_pred CCCCCCCCHHCCC
Q ss_conf 6656887200059
Q 537021.9.peg.6 34 IPIKNPIPQSLQC 46 (46)
Q Consensus 34 ipiknpipqslqc 46 (46)
.|..||--..|||
T Consensus 12 vpaqnpccrglqc 24 (34)
T 1x5v_A 12 VPAQNPCCRGLQC 24 (34)
T ss_dssp CGGGCCBCTTEEE
T ss_pred ECCCCCCCCCCEE
T ss_conf 5588963335241
Done!