RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.691_1
         (46 letters)



>gnl|CDD|163289 TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106
           family.  Members of this uncharacterized protein family
           are found broadly but sporadically among bacteria. The
           N-terminal region is homologous to the Cas4 protein of
           CRISPR systems, although this protein family shows no
           signs of association with CRISPR repeats.
          Length = 457

 Score = 26.5 bits (59), Expect = 1.5
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 14  SISPLFSRFISIYLLIFNS-AIPIKN 38
            I  L  RF+ I+ ++  S  +PI++
Sbjct: 371 EIEELLKRFVDIHTIVRRSWILPIES 396


>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
           Provisional.
          Length = 915

 Score = 26.1 bits (57), Expect = 2.2
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)

Query: 12  NISISP-LFSRFISIYLLI 29
           NI+ISP LF+RF  IYL++
Sbjct: 623 NINISPSLFTRFDLIYLVL 641


>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
          Length = 1470

 Score = 24.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 9   TYHNISISPLFSRFISIYLLIF 30
           TY++I  +P  SRF    LL+F
Sbjct: 636 TYYSIGFAPEASRFFKQLLLVF 657


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 709,759
Number of extensions: 25944
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 12
Length of query: 46
Length of database: 5,994,473
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,583,921
Effective search space: 150765867
Effective search space used: 150765867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)