RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.691_1
         (46 letters)



>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 232

 Score = 22.6 bits (48), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 15 ISPLFSRFISIYLLIFNSAI 34
          I  L SR++S Y+ + N  I
Sbjct: 15 ILALLSRYLSSYIHVLNKFI 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 156,667
Number of extensions: 4401
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 4
Length of query: 46
Length of database: 2,407,596
Length adjustment: 18
Effective length of query: 28
Effective length of database: 2,160,456
Effective search space: 60492768
Effective search space used: 60492768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)