RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.691_1 (46 letters) >d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 232 Score = 22.6 bits (48), Expect = 8.7 Identities = 8/20 (40%), Positives = 12/20 (60%) Query: 15 ISPLFSRFISIYLLIFNSAI 34 I L SR++S Y+ + N I Sbjct: 15 ILALLSRYLSSYIHVLNKFI 34 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.328 0.140 0.409 Gapped Lambda K H 0.267 0.0645 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 156,667 Number of extensions: 4401 Number of successful extensions: 12 Number of sequences better than 10.0: 1 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 4 Length of query: 46 Length of database: 2,407,596 Length adjustment: 18 Effective length of query: 28 Effective length of database: 2,160,456 Effective search space: 60492768 Effective search space used: 60492768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 47 (22.1 bits)