Query 537021.9.peg.74_1
Match_columns 196
No_of_seqs 127 out of 733
Neff 6.2
Searched_HMMs 39220
Date Mon May 23 09:04:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_74.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07209 ribonucleotide-diphos 100.0 0 0 421.6 21.5 193 2-194 41-233 (391)
2 PRK12759 bifunctional gluaredo 100.0 5.6E-44 0 309.7 17.5 148 33-194 99-246 (410)
3 PTZ00211 ribonucleotide reduct 100.0 1.4E-42 0 300.4 17.0 164 15-194 5-171 (330)
4 PRK09101 nrdB ribonucleotide-d 100.0 4.2E-42 0 297.3 18.8 179 13-194 7-203 (376)
5 PRK09614 nrdF ribonucleotide-d 100.0 2.4E-41 0 292.4 18.5 160 21-194 2-164 (325)
6 pfam00268 Ribonuc_red_sm Ribon 100.0 1.6E-40 4.2E-45 286.9 17.8 150 29-194 6-158 (281)
7 cd01049 RNRR2 Ribonucleotide R 100.0 1.6E-39 4.2E-44 280.3 18.7 152 32-194 1-154 (288)
8 COG0208 NrdF Ribonucleotide re 100.0 1.4E-38 3.6E-43 274.1 18.9 174 13-194 7-184 (348)
9 KOG1567 consensus 100.0 3.7E-39 9.2E-44 278.0 12.6 166 15-195 18-186 (344)
10 PRK13966 nrdF2 ribonucleotide- 100.0 4.8E-35 1.2E-39 250.8 17.0 135 31-168 13-149 (324)
11 PRK13965 ribonucleotide-diphos 100.0 3.1E-34 7.9E-39 245.5 16.2 133 32-167 27-161 (337)
12 PRK13967 nrdF1 ribonucleotide- 100.0 2.2E-33 5.6E-38 239.9 17.2 135 31-168 11-147 (322)
13 cd07911 RNRR2_Rv0233_like Ribo 99.9 5.6E-26 1.4E-30 191.1 15.5 120 43-165 10-134 (280)
14 PRK08326 ribonucleotide-diphos 99.9 1.3E-23 3.2E-28 175.5 15.6 111 43-158 28-141 (318)
15 pfam11583 AurF P-aminobenzoate 92.7 0.83 2.1E-05 25.1 8.8 88 50-140 38-134 (295)
16 PRK13778 paaA phenylacetate-Co 91.9 0.97 2.5E-05 24.7 7.1 77 74-151 36-112 (316)
17 cd00657 Ferritin_like Ferritin 91.6 1.1 2.9E-05 24.3 7.5 57 85-142 2-58 (130)
18 cd01051 Mn_catalase Manganese 88.5 2 5E-05 22.7 6.9 33 109-141 51-83 (156)
19 pfam05067 Mn_catalase Manganes 85.7 2.8 7.2E-05 21.6 6.2 77 48-142 117-193 (272)
20 cd01057 AAMH_A Aromatic and Al 79.6 4.8 0.00012 20.1 7.6 70 72-142 69-138 (465)
21 KOG3707 consensus 70.8 5.1 0.00013 19.9 3.3 133 21-196 140-289 (844)
22 COG1633 Uncharacterized conser 65.8 10 0.00026 18.0 8.4 60 82-142 25-84 (176)
23 COG3546 Mn-containing catalase 62.5 8.4 0.00021 18.5 3.0 77 48-142 117-193 (277)
24 pfam10118 Metal_hydrol Predict 62.3 12 0.0003 17.5 8.7 63 81-144 28-93 (251)
25 COG3396 Uncharacterized conser 53.6 16 0.00042 16.6 8.0 78 73-151 11-89 (265)
26 cd07910 MiaE MiaE tRNA-modifyi 53.4 16 0.00042 16.6 10.6 64 76-142 99-162 (180)
27 cd01054 consensus 48.1 20 0.00051 16.0 8.9 113 41-157 49-169 (296)
28 pfam10749 DUF2534 Protein of u 47.8 20 0.00051 16.0 7.5 62 75-136 9-73 (85)
29 pfam03405 FA_desaturase_2 Fatt 43.7 23 0.00059 15.6 7.3 95 51-149 104-223 (330)
30 cd07908 Mn_catalase_like Manga 39.3 27 0.00069 15.2 7.6 63 81-143 14-79 (154)
31 KOG1924 consensus 36.2 30 0.00077 14.9 5.0 118 16-139 687-825 (1102)
32 cd01050 Acyl_ACP_Desat Acyl AC 34.2 32 0.00082 14.7 7.7 111 32-151 82-219 (297)
33 TIGR01838 PHA_synth_I poly(R)- 27.9 41 0.001 14.0 5.8 70 107-187 47-120 (541)
34 TIGR02199 rfaE_dom_II rfaE bif 27.1 17 0.00043 16.5 -0.1 25 1-25 45-69 (144)
35 pfam11477 PM0188 Sialyltransfe 25.7 15 0.00037 16.9 -0.6 109 26-136 162-282 (381)
36 pfam06514 PsbU Photosystem II 25.5 37 0.00094 14.3 1.4 53 32-94 67-119 (135)
37 COG3687 Predicted metal-depend 25.4 45 0.0012 13.7 7.6 75 52-144 28-105 (280)
38 pfam02332 Phenol_Hydrox Methan 24.7 47 0.0012 13.6 8.6 83 74-157 67-153 (233)
39 KOG4093 consensus 24.4 47 0.0012 13.6 5.2 66 106-174 10-99 (144)
40 pfam02915 Rubrerythrin Rubrery 23.1 50 0.0013 13.4 7.0 57 85-142 2-60 (137)
41 TIGR02029 AcsF magnesium-proto 22.8 37 0.00095 14.2 1.0 38 102-139 99-138 (344)
42 pfam06175 MiaE tRNA-(MS[2]IO[6 22.7 51 0.0013 13.3 10.6 79 75-168 108-186 (199)
43 pfam11239 DUF3040 Protein of u 22.1 53 0.0013 13.3 2.8 29 73-101 2-30 (82)
44 pfam06874 FBPase_2 Firmicute f 21.6 54 0.0014 13.2 2.9 10 130-139 134-143 (641)
45 TIGR02070 mono_pep_trsgly mono 21.3 55 0.0014 13.2 1.6 41 129-170 182-226 (228)
46 COG3943 Virulence protein [Gen 20.7 56 0.0014 13.1 4.3 94 74-168 144-270 (329)
No 1
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=0 Score=421.63 Aligned_cols=193 Identities=62% Similarity=1.127 Sum_probs=189.3
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 83102466630676678320224277668220087627899999999985049833467346168520401489899999
Q 537021.9.peg.7 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 (196)
Q Consensus 2 ~~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~ 81 (196)
...+|+.++..++.||++++||||||++|+|||+||||||||++|+++++|||+|+||+|++|+.||++.++||++||++
T Consensus 41 ~~~~~~~~~~~~~~r~~~~~k~~in~~~d~nql~P~kY~WA~e~y~~~~anhW~PeEV~m~~Di~dWk~~~~Ltd~Er~~ 120 (391)
T PRK07209 41 DVATGLEELEGGAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRI 120 (391)
T ss_pred CCCCCHHHHHCCCCCCCCCCCCEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 65553667643477667452100226563300388787899999999977689756547777899852657899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999776367777778888765286899999999999999999999999998237636899999509999999999
Q 537021.9.peg.7 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 (196)
Q Consensus 82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~ 161 (196)
++++|+||+++||+|++|+.+++++++++||+|+|+++|+++|+||+++|+|||+|||+|++|+|++|+++|+|++|++|
T Consensus 121 i~~iL~FFa~sDsiV~nNl~~~~~~~it~PE~r~~l~rQa~eEaIH~~aYs~lleslg~d~~Eif~a~~~ipsi~~K~df 200 (391)
T PRK07209 121 VKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEF 200 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH
T ss_conf 99999998677899985099998865696999999999999999999999999981189889999999527889989999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999998530113344793348999999999963
Q 537021.9.peg.7 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 (196)
Q Consensus 162 ~~k~~~~i~~~~~~~~~~e~~~~~l~~li~f~~ 194 (196)
+.+|++++.+|+|.+++++++++|+++||+|+|
T Consensus 201 ~~~~~~~l~d~~f~~~t~e~~~~f~~~Li~F~~ 233 (391)
T PRK07209 201 LLPFTRALTDPNFKTGTPEADQKLLRNLIAFYC 233 (391)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999862545456880259999999999999
No 2
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=5.6e-44 Score=309.75 Aligned_cols=148 Identities=22% Similarity=0.398 Sum_probs=136.3
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 00876278999999999850498334673461685204014898999999999999977636777777888876528689
Q 537021.9.peg.7 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 (196)
Q Consensus 33 ~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE 112 (196)
.++||+|||+|++|++++++||+|+||||++|+.||++ ++||++||++++++|+|||++|++|++|+..++++.++.||
T Consensus 99 tykP~~Yp~awe~ykk~~~~~Wt~eEIdL~~Dv~DW~~-~kLtd~Er~fIk~iLaFFA~sD~iV~eNl~~~f~~ev~~pE 177 (410)
T PRK12759 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLFKNNE 177 (410)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 65784388999999999980797676465441887601-78997999999999999975799999999999998747899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999982376368999995099999999999999985301133447933489999999999
Q 537021.9.peg.7 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 (196)
Q Consensus 113 ~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~l~~li~f 192 (196)
+|+||++|+++|+||+++||+|++|||.|+.| |+++.++|+|++|++|+.+|. +.....+...++++
T Consensus 178 ar~fy~~Qa~~E~IHse~YslLidTl~~~d~e-f~a~~~~p~i~~K~~~~~~~~------------~~~~~~~a~~l~~~ 244 (410)
T PRK12759 178 IRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAMTDKIDFMMDAD------------PTTRRGLGLCLAKT 244 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHCCC------------CCHHHHHHHHHHHH
T ss_conf 99999999999999999999999985698899-999998599998999984689------------32788999999999
Q ss_pred HH
Q ss_conf 63
Q 537021.9.peg.7 193 LC 194 (196)
Q Consensus 193 ~~ 194 (196)
++
T Consensus 245 ~f 246 (410)
T PRK12759 245 VF 246 (410)
T ss_pred HH
T ss_conf 99
No 3
>PTZ00211 ribonucleotide reductase small subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=300.43 Aligned_cols=164 Identities=32% Similarity=0.565 Sum_probs=152.3
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66783202242776682200876278999999999850498334673461685204014898999999999999977636
Q 537021.9.peg.7 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 (196)
Q Consensus 15 ~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~ 94 (196)
.+.+.++..|+.+++++.+++||||||+|++|+++++|||+|+||+|++|+.||++ ||+.||++++++|+|||++|+
T Consensus 5 ~~~~q~~e~~l~~n~~R~~l~P~kYp~~~~~ykk~~~~fW~peEi~ls~D~~dw~~---Lt~~Er~~~~~iL~~~t~~D~ 81 (330)
T PTZ00211 5 EKENEVEEPLLKENPDRYVLFPIKYPDIWRKYKKAEASFWTVEEIDLGNDLKDWEK---LNDGERHFIKHVLAFFAASDG 81 (330)
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHH
T ss_conf 54101048534689874355286367999999999975897330263323999976---999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 77777788887652868999999999999999999999999982376368---999995099999999999999985301
Q 537021.9.peg.7 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 (196)
Q Consensus 95 ~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e---if~~~~~~p~i~~K~~~~~k~~~~i~~ 171 (196)
+|++|+...+++.++.||+++++++|++||+||++|||+|++++++|+.| +|++++++|+|++|++|+.+|+++
T Consensus 82 ~v~~~l~~~~~~~i~~pE~~~~~~~q~~~E~IH~~sYs~ii~tl~~d~~e~~~if~~~~~~~~i~~k~~~~~~~~~~--- 158 (330)
T PTZ00211 82 IVLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPCIKKKAEWAIRWINS--- 158 (330)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99722999998867879999999999999999999999999997498789999999999999999999999975169---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 13344793348999999999963
Q 537021.9.peg.7 172 PSFHYWNKRRRSRILTRSLRFLC 194 (196)
Q Consensus 172 ~~~~~~~~e~~~~~l~~li~f~~ 194 (196)
++.+..+||+|+|
T Consensus 159 ----------~~~~~~~lva~~~ 171 (330)
T PTZ00211 159 ----------SASFAERLVAFAA 171 (330)
T ss_pred ----------CHHHHHHHHHHHH
T ss_conf ----------5369999999870
No 4
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=4.2e-42 Score=297.33 Aligned_cols=179 Identities=17% Similarity=0.213 Sum_probs=160.4
Q ss_pred CCCCCCCCCCCCCCCC-CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6766783202242776-682200876278999999999850498334673461685204014898999999999999977
Q 537021.9.peg.7 13 GEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 (196)
Q Consensus 13 ~~~~~~~~~~~ii~~~-~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~ 91 (196)
+..++..-+++|+.|. +++.++.-+||||++++|++|.++||+||||||++|+.||++ ||++||++++++|+|||.
T Consensus 7 n~~~~d~~~~p~F~G~~~~i~~~~~~kYp~~~~Lykkq~~~FW~PEEIdLs~D~~d~~~---Lt~~Ek~~f~~~L~f~t~ 83 (376)
T PRK09101 7 SQTKNDQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTL 83 (376)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_conf 68876300288427997442143201457999999999867898311223631999987---799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 63677777788887652868999999999999999999999999982376368999995099999999999999985301
Q 537021.9.peg.7 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 (196)
Q Consensus 92 ~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i~~ 171 (196)
+||+|++|+..++++++++||+++++++|+++|+||++||||||++++.||+++|+++.++|+|.+|++|+.+|++.+.+
T Consensus 84 lDSiq~~n~~~~f~~~is~PE~~~~~~~q~~~E~IHs~SYs~Ii~t~~~dp~eiFd~i~~~~~i~kra~~i~~~yd~l~~ 163 (376)
T PRK09101 84 LDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAEDISSYYDDLIE 163 (376)
T ss_pred HHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998535076775546799999999999999999999999999986289899999998479999999999999899998
Q ss_pred C-----------------CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1-----------------3344793348999999999963
Q 537021.9.peg.7 172 P-----------------SFHYWNKRRRSRILTRSLRFLC 194 (196)
Q Consensus 172 ~-----------------~~~~~~~e~~~~~l~~li~f~~ 194 (196)
. .......+.++++++.|++++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~~alva~~i 203 (376)
T PRK09101 164 MTQYYHLLGEGTHTVNGKTVTVNLRELKKKLYLCLMSVNA 203 (376)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8788875144310125541100168899999999999998
No 5
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=2.4e-41 Score=292.38 Aligned_cols=160 Identities=26% Similarity=0.455 Sum_probs=148.6
Q ss_pred CCCCCCCC-CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02242776-68220087627899999999985049833467346168520401489899999999999997763677777
Q 537021.9.peg.7 21 DKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 (196)
Q Consensus 21 ~~~ii~~~-~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~n 99 (196)
.++|++|. ++..+++|++|||+|++|++++++||+|+||+|++|+.||++ ||+.||++++++|+|||++|++|+++
T Consensus 2 ~~~~~~g~~~~~~n~~~~~y~~~~~~y~~~~~~fW~peEi~l~~D~~dw~~---Lt~~Ek~~~~~~L~~~t~~D~~v~~~ 78 (325)
T PRK09614 2 SRKIIMGNLYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKK---LSAEEKNLYTRVFGGLTLLDTLQNNN 78 (325)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 860058996766235965678999999999857899635380200999987---99999999999999999985765505
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78888765286899999999999999999999999998237636--8999995099999999999999985301133447
Q 537021.9.peg.7 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 (196)
Q Consensus 100 l~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~ 177 (196)
+...+.++++.||+++++++|+++|+||++|||+|+++|+++++ ++|+++.++|+|++|++|+.++++.
T Consensus 79 ~~~~~~~~~~~pE~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~~~f~~~~~~~~i~~k~~~i~~~y~~--------- 149 (325)
T PRK09614 79 GMPNIMPDITTPEEKAVLANIAFMEAVHAKSYSYILSTLCTPEEIDEAFEWVEENPYLQKKADIIMQVYEE--------- 149 (325)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCC---------
T ss_conf 89998504994899999999999999999999999998199488999999997069999999999998727---------
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 93348999999999963
Q 537021.9.peg.7 178 NKRRRSRILTRSLRFLC 194 (196)
Q Consensus 178 ~~e~~~~~l~~li~f~~ 194 (196)
+..+.++++||+++|
T Consensus 150 --~~~~~~~~~lva~~~ 164 (325)
T PRK09614 150 --ETKEDPLKALVASVF 164 (325)
T ss_pred --CCHHHHHHHHHHHHH
T ss_conf --646789999999999
No 6
>pfam00268 Ribonuc_red_sm Ribonucleotide reductase, small chain.
Probab=100.00 E-value=1.6e-40 Score=286.86 Aligned_cols=150 Identities=25% Similarity=0.462 Sum_probs=138.5
Q ss_pred CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 68220087627899999999985049833467346168520401489899999999999997763677777788887652
Q 537021.9.peg.7 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 (196)
Q Consensus 29 ~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i 108 (196)
.+.++++||+|||+|++|++++++||+|+||+|++|++||++ ||+.||++++++|+|||++|++|++++...+++.+
T Consensus 6 en~~r~~PikYp~~~~~yk~~~~~fW~peEi~l~~D~~dw~~---Lt~~Er~~~~~iL~~~t~~D~~v~~~~~~~~~~~~ 82 (281)
T pfam00268 6 ENSKRFYPIQHPDIWELYKKAEANRWLAEEVDLSKDIPDWEK---LNEAEREFYSFVFAFLAAADGIVNENLAERLSAEF 82 (281)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 861235698585999999999977899621271411999987---99999999999999999999999987899999877
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 868999999999999999999999999982376368---99999509999999999999998530113344793348999
Q 537021.9.peg.7 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 (196)
Q Consensus 109 ~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e---if~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~ 185 (196)
+.||+++++++|+++|+||++|||+|+++|++|+.| +|+++.++|+|++|++|+.+|++. ++.+
T Consensus 83 ~~pE~~~~~~~q~~~E~IH~~sYs~il~tl~~d~~e~~~~f~~~~~~~~i~~k~~~~~~~~~~-------------~~~~ 149 (281)
T pfam00268 83 QQKDILHYYGEQIAIENVHSEVYSLIQLTLFNDEKERDAYFNAIETDPAIQRKAQWLLRWVRD-------------AESL 149 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CHHH
T ss_conf 849999999999999999999999999987389178999999999889999999999998527-------------7079
Q ss_pred HHHHHHHHH
Q ss_conf 999999963
Q 537021.9.peg.7 186 LTRSLRFLC 194 (196)
Q Consensus 186 l~~li~f~~ 194 (196)
.+++|+|+|
T Consensus 150 ~~~lva~~~ 158 (281)
T pfam00268 150 AEKLIAFAL 158 (281)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 7
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=1.6e-39 Score=280.31 Aligned_cols=152 Identities=39% Similarity=0.713 Sum_probs=143.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 20087627899999999985049833467346168520401489899999999999997763677777788887652868
Q 537021.9.peg.7 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 (196)
Q Consensus 32 ~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~p 111 (196)
.+++|++|||+|++|++++++||+|+||+|++|++||++ ||++||++++++|+||+++|++|++++...+.+.++.|
T Consensus 1 ~~~~p~~y~~~~~~y~~~~~~fW~~eEi~l~~D~~dw~~---lt~~ek~~~~~~La~~~~~D~~v~~~~~~~~~~~~~~p 77 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEK---LTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIP 77 (288)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 987887777999999999877998310073621999987---99999999999999999985688733899987635878
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999999999999999999823763--68999995099999999999999985301133447933489999999
Q 537021.9.peg.7 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 (196)
Q Consensus 112 E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~--~eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~l~~l 189 (196)
|+++++++|+++|+||++|||+|++++++|+ +++|+++.++|+|++|++|+.+|++...++ .++.++++|
T Consensus 78 E~~~~~~~q~~~E~iHs~sYs~il~~l~~~~~~~~~f~~~~~~~~i~~k~~~~~~~~~~~~~~--------~~~~~~~~l 149 (288)
T cd01049 78 EARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAIETDPALKKKADWILRWYDNLDDN--------TKESFAERL 149 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC--------CHHHHHHHH
T ss_conf 999999999999999999999999986798778999999852799999999999999723352--------168999999
Q ss_pred HHHHH
Q ss_conf 99963
Q 537021.9.peg.7 190 LRFLC 194 (196)
Q Consensus 190 i~f~~ 194 (196)
|+|+|
T Consensus 150 i~~~~ 154 (288)
T cd01049 150 VAFAI 154 (288)
T ss_pred HHHHH
T ss_conf 99999
No 8
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=274.10 Aligned_cols=174 Identities=29% Similarity=0.491 Sum_probs=150.0
Q ss_pred CCCCCCCCCCCCCCCC-CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6766783202242776-682200876278999999999850498334673461685204014898999999999999977
Q 537021.9.peg.7 13 GEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 (196)
Q Consensus 13 ~~~~~~~~~~~ii~~~-~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~ 91 (196)
...+.+..++++++|+ +++.+++|++|||+|++|+++.+|||+||||||++|+.||+ +||+.||+++.++|+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~---~Ls~~Ek~~~~~vl~~lt~ 83 (348)
T COG0208 7 PTKNDELEEPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWK---KLSDDEKDLIIRVLAFLTL 83 (348)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_conf 5356753300103678655455776444899999999886578810157623199987---6799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHH-HHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 636777777888876528689999999999999999999999999823763--6899-9995099999999999999985
Q 537021.9.peg.7 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF-NMYREVPSITAKANWALQYTQT 168 (196)
Q Consensus 92 ~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~--~eif-~~~~~~p~i~~K~~~~~k~~~~ 168 (196)
+|++|++++...++++++.||+++++++|+|||+||++|||+|++|++.++ .++| ++..+.|.+++|++++..+++.
T Consensus 84 lDsiq~~~~~~~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k~~~i~~~y~~ 163 (348)
T COG0208 84 LDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEKAEIILRYYDD 163 (348)
T ss_pred HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99888601188899874687999999999999999999999999985897006799999875249999999999999873
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30113344793348999999999963
Q 537021.9.peg.7 169 LSSPSFHYWNKRRRSRILTRSLRFLC 194 (196)
Q Consensus 169 i~~~~~~~~~~e~~~~~l~~li~f~~ 194 (196)
.+++. .+..+..++.++.|.|
T Consensus 164 -~~~~~----~~~~~~~~~~~~v~~~ 184 (348)
T COG0208 164 -LGDDP----DDPLEEFLLKLVVASV 184 (348)
T ss_pred -CCCCC----CCCHHHHHHHHHHHHH
T ss_conf -16785----5424899999999999
No 9
>KOG1567 consensus
Probab=100.00 E-value=3.7e-39 Score=277.98 Aligned_cols=166 Identities=30% Similarity=0.516 Sum_probs=154.4
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66783202242776682200876278999999999850498334673461685204014898999999999999977636
Q 537021.9.peg.7 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 (196)
Q Consensus 15 ~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~ 94 (196)
.....++..++..++.++.++|++|+..|++||+++++||+++||++++|..||. +|+++||++|.++|+||+++|+
T Consensus 18 ~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~---~L~~~er~fIs~vlaffaasdG 94 (344)
T KOG1567 18 MKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWE---KLNDDERHFISHVLAFFAASDG 94 (344)
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHH---HCCHHHHHHHHHHHHHHHCCCC
T ss_conf 3456433533367887722366125999999976424567187740012346698---7070335369999998843665
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 77777788887652868999999999999999999999999982376368---999995099999999999999985301
Q 537021.9.peg.7 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 (196)
Q Consensus 95 ~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e---if~~~~~~p~i~~K~~~~~k~~~~i~~ 171 (196)
+|+.|+...+...++.||+|++|++|+++|||||++||.+|+|++.|++| +|+++.+.|+|++||+|+.+|+++
T Consensus 95 ivnenl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d--- 171 (344)
T KOG1567 95 IVNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISD--- 171 (344)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_conf 04389999888886151100002247799887899999999998569066657999987237777777999988527---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 133447933489999999999633
Q 537021.9.peg.7 172 PSFHYWNKRRRSRILTRSLRFLCR 195 (196)
Q Consensus 172 ~~~~~~~~e~~~~~l~~li~f~~~ 195 (196)
.+..|..+||||||-
T Consensus 172 ---------~~s~faeRlvAFAav 186 (344)
T KOG1567 172 ---------KDSLFAERLVAFAAV 186 (344)
T ss_pred ---------CCCCHHHHHHHHHHH
T ss_conf ---------875099999999987
No 10
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=4.8e-35 Score=250.82 Aligned_cols=135 Identities=21% Similarity=0.330 Sum_probs=127.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 22008762789999999998504983346734616852040148989999999999999776367777778888765286
Q 537021.9.peg.7 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 (196)
Q Consensus 31 ~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~ 110 (196)
-.|+.-++|||++++|+++.+|||+|+||||++|+.||++ ||++||++++++|+|||++||+|++++...+.+.++.
T Consensus 13 ~~Nwn~~~~~~~~~~y~~~~~nfW~PeEI~l~~D~~dw~~---Lt~~Ek~~~~~iL~~lt~lDs~q~~~~~~~~~~~~~~ 89 (324)
T PRK13966 13 AINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALT 89 (324)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf 6678886568999999999968788710342412999976---9999999999999999999999976529989887488
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999823763--68999995099999999999999985
Q 537021.9.peg.7 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168 (196)
Q Consensus 111 pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~--~eif~~~~~~p~i~~K~~~~~k~~~~ 168 (196)
||+++++++|++||+||++|||||++|++.++ +++|+++.++|.|++|++|+.++++.
T Consensus 90 pE~~~~l~~~a~~E~IHs~SYs~i~~tl~~~~e~~~~f~~~~~~~~l~~k~~~i~~~~~~ 149 (324)
T PRK13966 90 PHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQYYRG 149 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999999998089251899999985089999999999999618
No 11
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=3.1e-34 Score=245.50 Aligned_cols=133 Identities=21% Similarity=0.288 Sum_probs=126.9
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 20087627899999999985049833467346168520401489899999999999997763677777788887652868
Q 537021.9.peg.7 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 (196)
Q Consensus 32 ~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~p 111 (196)
.|+.-++|||++.+|+++.+|||+|+||||++|+.||++ ||++||++++++|+|||++|++|+++....++++++.|
T Consensus 27 ~NWn~~~~~~~~~~w~~~~~nFW~PeEI~ls~D~~dw~~---Ls~~Ek~~~~~iL~~lt~lDs~q~~~~~~~~~~~~~~~ 103 (337)
T PRK13965 27 INWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTD 103 (337)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCH
T ss_conf 578887658899999999968687700451744999987---99999999999999999999998655217663106879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998237636--899999509999999999999998
Q 537021.9.peg.7 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQ 167 (196)
Q Consensus 112 E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~p~i~~K~~~~~k~~~ 167 (196)
|+++++++|++||+||++|||+|++|++.+++ ++|+++.++|.|++|++|+.++++
T Consensus 104 e~~~~l~~~~~~EaIHs~SYS~il~tl~~~~e~~e~f~~~~~~~~l~~k~~~i~~~y~ 161 (337)
T PRK13965 104 HEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTESLQDRARVLIPYYT 161 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999966987699999987149999999999998852
No 12
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.2e-33 Score=239.88 Aligned_cols=135 Identities=21% Similarity=0.336 Sum_probs=127.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 22008762789999999998504983346734616852040148989999999999999776367777778888765286
Q 537021.9.peg.7 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 (196)
Q Consensus 31 ~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~ 110 (196)
-.|+.-++||+++++|+++.+|||+|+||+|++|+.||++ ||++||++++++|+||+++|++|+++....++++++.
T Consensus 11 ~~NWn~~~~~~~~~~w~~~~~nfW~PeEI~ls~Di~dw~~---L~~~Ek~~~~~il~~lt~lDs~q~~~~~~~~~~~~~~ 87 (322)
T PRK13967 11 AINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVT 87 (322)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf 6688887768899999999978888712162422999876---9999999999999999999999982249888887289
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999999999998237636--8999995099999999999999985
Q 537021.9.peg.7 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQT 168 (196)
Q Consensus 111 pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~p~i~~K~~~~~k~~~~ 168 (196)
||+++++++|++||+||++|||||++|++.+++ ++|++++++|.|++|++|+.++++.
T Consensus 88 pe~~~~l~~~a~~EaIHs~SYs~i~~tl~~~~e~~~~f~~~~~~p~l~~k~~~~~~~~~~ 147 (322)
T PRK13967 88 PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQIIVDYYRG 147 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999999998589677999999996399999999999998238
No 13
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=99.94 E-value=5.6e-26 Score=191.08 Aligned_cols=120 Identities=21% Similarity=0.338 Sum_probs=101.8
Q ss_pred HHHHHHHHHH-CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHH
Q ss_conf 9999999850-4983346734616852040148989999999999999776367777778888--765286899999999
Q 537021.9.peg.7 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI--YRHLSNPECRQYLLR 119 (196)
Q Consensus 43 ~~~yk~~~~~-fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i--~~~i~~pE~~~~~~~ 119 (196)
+.+|.++.++ ||+|+||||++|++||++ ||+.||++++++|+||+++|++|++|+...+ ....+.||+++|+++
T Consensus 10 ~~l~~~~~~~nFW~PeEId~s~D~~dW~~---Lt~~Er~~i~~ila~F~~~d~~V~~nl~~~~~~~~~~~~~e~~~~l~~ 86 (280)
T cd07911 10 MKLFEKGKRKGFWNPADIDFSQDREDWEQ---LSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQ 86 (280)
T ss_pred HHHHHHHHCCCCCCHHHCCCCCHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89999764038998477086013888856---999999999999999998588999879999988520375899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 999999999999999998237636--8999995099999999999999
Q 537021.9.peg.7 120 QAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQY 165 (196)
Q Consensus 120 q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~p~i~~K~~~~~k~ 165 (196)
|+++|+||+++||+++++++.+++ +.++.....+.+.++.....+.
T Consensus 87 q~~eEaiH~~sYs~~~~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (280)
T cd07911 87 FLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELRL 134 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998467565888856898728999999999975
No 14
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=99.92 E-value=1.3e-23 Score=175.54 Aligned_cols=111 Identities=27% Similarity=0.442 Sum_probs=99.4
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHH
Q ss_conf 99999998504983346734616852040148989999999999999776367777778888765286---899999999
Q 537021.9.peg.7 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN---PECRQYLLR 119 (196)
Q Consensus 43 ~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~---pE~~~~~~~ 119 (196)
+.+|++++++||.|+||||++|+.||++ ||+.||+++.+++++|+.+|++|+.|+.. +...++. +|.++|++.
T Consensus 28 ~~Ly~~~~~~FW~PeeId~SqD~~Dw~~---Lt~~ER~~~~~i~s~f~age~~Vt~nl~p-~~~~~~~~~~~e~~l~Lt~ 103 (318)
T PRK08326 28 MKLFAKGNRKFWNPADIDFSRDRADWEK---LSDDERDYATRLCSQFIAGEEAVTLDIQP-LMAAMRAEGRLEDEMYLTQ 103 (318)
T ss_pred HHHHHHHHHCCCCHHHCCCCCCHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHH
T ss_conf 8999986306888775787330898876---89999999999999998607899976377-8998861584346899999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
Q ss_conf 999999999999999998237636899999509999999
Q 537021.9.peg.7 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 (196)
Q Consensus 120 q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K 158 (196)
|+|+|++|++||+++++++|.++ +++....+.|.+++.
T Consensus 104 qafeEAvHtqsys~~ldtv~~~~-dl~~~~~d~p~~~~~ 141 (318)
T PRK08326 104 FAFEEAKHTEAFRRWLDAVGVTE-DLHVYTTDLPSYRQI 141 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHH
T ss_conf 99999999999999999956857-789987513688999
No 15
>pfam11583 AurF P-aminobenzoate N-oxygenase AurF. AurF is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalysing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.
Probab=92.71 E-value=0.83 Score=25.13 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=57.7
Q ss_pred HHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH-----HHHHHHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 850498334673461685204014898999999999-----999977636777----77788887652868999999999
Q 537021.9.peg.7 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-----LGFFASSESLVA----NNIVLAIYRHLSNPECRQYLLRQ 120 (196)
Q Consensus 50 ~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~i-----L~ffs~~D~~v~----~nl~~~i~~~i~~pE~~~~~~~q 120 (196)
..-+|.|.|..---+-.-|. .|++++|.-+.+- +......+.++. +.+....+........+.+...+
T Consensus 38 ~~~~~~ppe~~pl~gtp~~~---~l~~e~r~~l~~~~~~~~~s~~i~~E~~lv~~~~~~l~~~~~~~~~~~~~~~ya~~e 114 (295)
T pfam11583 38 DDRWIYPPERVPLYGTPLWD---AMPEEQRIELLRQELANFLSVGIWFETILVNPVARLLLRGALPVDPPSAHRQYALTE 114 (295)
T ss_pred CCCCCCCHHHCCCCCCHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 88678994437546897888---589999999999999999999999999999999999987503789980899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999998237
Q 537021.9.peg.7 121 AFEEAVHSHTFQYIITSLGL 140 (196)
Q Consensus 121 ~~~E~iHs~sYs~il~tl~~ 140 (196)
...|+.|+.++.-.++..|.
T Consensus 115 ~~DE~~H~~mf~~~~~~~g~ 134 (295)
T pfam11583 115 IVDECYHALMFQDAIERIGR 134 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999899999999999876
No 16
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=91.88 E-value=0.97 Score=24.69 Aligned_cols=77 Identities=21% Similarity=0.191 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 898999999999999977636777777888876528689999999999999999999999999823763689999950
Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 (196)
Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~ 151 (196)
|++.-|..+.+.+++.+.++ +|+--.--+-.+..+...-++.+..-..-|+=|..---...++||.+.+++++....
T Consensus 36 MP~~YR~~L~R~i~qHAhSE-IvG~lpE~~Wi~rAPsL~rK~~llAKVQDE~GHg~~ly~aaEtLG~~Reel~~~l~~ 112 (316)
T PRK13778 36 MPDAYRKTLIRQISQHAHSE-IVGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELIDDLHS 112 (316)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 88999999999999987778-883574545100387577889999997531016999999999809999999999855
No 17
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=91.55 E-value=1.1 Score=24.25 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196)
Q Consensus 85 iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196)
+|..+-.++ ..+.+....+...++.|+++..+..++.+|..|.+....++..+|..|
T Consensus 2 ~L~~~l~~E-~~a~~~Y~~~a~~~~~~~~~~~~~~~a~eE~~H~~~l~~~~~~l~~~p 58 (130)
T cd00657 2 LLNDALAGE-YAAIIAYGQLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTP 58 (130)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 888999999-999999999998889977999999999999999999999999808988
No 18
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=88.53 E-value=2 Score=22.65 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 868999999999999999999999999982376
Q 537021.9.peg.7 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 (196)
Q Consensus 109 ~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d 141 (196)
+.|+++..+.-.+.+|--|-+.-+.++..|+.|
T Consensus 51 ~~~~~~dll~dI~teEl~HlEml~t~I~~L~~d 83 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKD 83 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 777799999999999999999999999997168
No 19
>pfam05067 Mn_catalase Manganese containing catalase. Catalases are important antioxidant metalloenzymes that catalyse disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.
Probab=85.75 E-value=2.8 Score=21.64 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=55.9
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99850498334673461685204014898999999999999977636777777888876528689999999999999999
Q 537021.9.peg.7 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 (196)
Q Consensus 48 ~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iH 127 (196)
....+-|+..-|.-+.|. ..+ +..++ .++ ..++-....++....+|.+|-++++-...|.+|
T Consensus 117 ds~G~PWt~~Yi~~sGnl---------~aD----L~~N~----aaE-~~aR~~y~rL~~mTdDp~vkd~L~FL~~Re~~H 178 (272)
T pfam05067 117 DSAGVPWTADYIVASGNL---------IAD----LRANL----AAE-SQARLQYTRLYEMTDDPGVRDMLSFLIVRDTVH 178 (272)
T ss_pred CCCCCCCCCCEEEECCCH---------HHH----HHHHH----HHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 789995660002314877---------888----99989----999-754999999998108823999999999998999
Q ss_pred HHHHHHHHHHHCCCH
Q ss_conf 999999999823763
Q 537021.9.peg.7 128 SHTFQYIITSLGLDE 142 (196)
Q Consensus 128 s~sYs~il~tl~~d~ 142 (196)
...|.--|++++-++
T Consensus 179 q~~f~~ALe~l~~~~ 193 (272)
T pfam05067 179 QNAFAKALEILEEVE 193 (272)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999830757
No 20
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=79.60 E-value=4.8 Score=20.10 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 14898999999999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196)
Q Consensus 72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196)
+++-+.=...+|-.++..+.++-...+... .+.+.++.||.|..+++|+.-|..|++.=.|+..-+....
T Consensus 69 ~~~dpr~~~~~Kl~~~~i~~~EY~A~~~~a-~~~r~~~~~~~Rn~~~~q~lDE~RH~q~q~~~~~~y~k~~ 138 (465)
T cd01057 69 EKVDPRWVEAMKLFLGAITPGEYAAVRGMA-MLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNY 138 (465)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 447868999999998248889999999999-9987369889999988767888889999998999887308
No 21
>KOG3707 consensus
Probab=70.77 E-value=5.1 Score=19.95 Aligned_cols=133 Identities=14% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCCCCCCCCHHHC---CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH----H
Q ss_conf 02242776682200---8762789999999998504983346734616852040148989999999999999776----3
Q 537021.9.peg.7 21 DKRMLNARSDVNQL---LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS----E 93 (196)
Q Consensus 21 ~~~ii~~~~~~~~l---~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~----D 93 (196)
+|.++.++-....+ +|.+.| ....|...-.++.. .|++. |+++|+..+.+++-+=|.. |
T Consensus 140 ~r~~~~~sk~a~dfLP~~Pv~~~---------iepWWr~~~g~~le--~d~k~---Lse~E~~~iD~l~d~~A~pagl~d 205 (844)
T KOG3707 140 KRIMWKLSKIAKDFLPTLPVDFP---------IEPWWRVCLGNFLE--EDFKK---LSEDEMATIDKLCDEEANPAGLFD 205 (844)
T ss_pred CHHHHHCCCCHHHHCCCCCCCCC---------CCCHHHHHHHHHHH--HHHHH---CCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 24666225466775567876741---------35266542466319--98874---399888889999732788444569
Q ss_pred HHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 67777778888765----------28689999999999999999999999999823763689999950999999999999
Q 537021.9.peg.7 94 SLVANNIVLAIYRH----------LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 (196)
Q Consensus 94 ~~v~~nl~~~i~~~----------i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~ 163 (196)
--|...+...=.-+ +..|-.+.| |-+++|.--+|+|-- .||-.+.+.-.+++-++.+.
T Consensus 206 ~~Vv~sLY~rGLiYfDVPvy~~Dri~v~pL~gF---------vmNRv~gDyfEtLLY---kIFVs~dEhtTVaELAq~Lq 273 (844)
T KOG3707 206 PEVVKSLYQRGLIYFDVPVYQDDRIKVSPLEGF---------VMNRVYGDYFETLLY---KIFVSIDEHTTVAELAQTLQ 273 (844)
T ss_pred HHHHHHHHHCCEEEEECCCCCCCEEEECCHHHH---------HHHCCCCCHHHHHHH---HHEEECCCCCHHHHHHHHHH
T ss_conf 899999987773898335456873640530334---------540232218999899---87265146640999999988
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999853011334479334899999999996339
Q 537021.9.peg.7 164 QYTQTLSSPSFHYWNKRRRSRILTRSLRFLCRV 196 (196)
Q Consensus 164 k~~~~i~~~~~~~~~~e~~~~~l~~li~f~~~~ 196 (196)
-+-+.+++.|.|+||.
T Consensus 274 -----------------iDl~~vknAiSf~CRL 289 (844)
T KOG3707 274 -----------------IDLTLVKNAISFVCRL 289 (844)
T ss_pred -----------------HHHHHHHHHHHHHHHH
T ss_conf -----------------7799999889997641
No 22
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=65.83 E-value=10 Score=17.97 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196)
Q Consensus 82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196)
+..+|+.=..++ ..+......+...+.++++|-.+...+-+|..|.+.+.-++..++.++
T Consensus 25 ~~e~L~~Ai~~E-~eA~~fY~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 25 IEELLAIAIRGE-LEAIKFYEELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999979-999999999997658776999999999999999999999999866775
No 23
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=62.49 E-value=8.4 Score=18.53 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=54.4
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99850498334673461685204014898999999999999977636777777888876528689999999999999999
Q 537021.9.peg.7 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 (196)
Q Consensus 48 ~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iH 127 (196)
....+-|+..=|.-+.|+ ..+ +..+++ ++ ..++-....++....+|.+|-++++-...|..|
T Consensus 117 dS~G~pWta~YI~~sGnl---------iaD----lr~Nia----aE-~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H 178 (277)
T COG3546 117 DSAGVPWTAAYIVASGNL---------IAD----LRSNIA----AE-ARARLQYERLYEMTDDPGVRDTLSFLLTREIAH 178 (277)
T ss_pred CCCCCCCCHHHHHCCCCC---------HHH----HHHHHH----HH-HCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 568996502344336850---------899----999888----87-415000002010478802899999999987899
Q ss_pred HHHHHHHHHHHCCCH
Q ss_conf 999999999823763
Q 537021.9.peg.7 128 SHTFQYIITSLGLDE 142 (196)
Q Consensus 128 s~sYs~il~tl~~d~ 142 (196)
+.+|.--|+++.-..
T Consensus 179 ~~~f~kAL~~l~~~~ 193 (277)
T COG3546 179 QNAFRKALESLENEE 193 (277)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999987225
No 24
>pfam10118 Metal_hydrol Predicted metal-dependent hydrolase. Members of this family of proteins comprise various bacterial transition metal-dependent hydrolases.
Probab=62.26 E-value=12 Score=17.55 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHH
Q ss_conf 99999999977636777777888876528689999999999999999999999---99982376368
Q 537021.9.peg.7 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY---IITSLGLDEGE 144 (196)
Q Consensus 81 ~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~---il~tl~~d~~e 144 (196)
++.-.=.+|-.+|-.-.+.. -...+.|+.|+.+.=...++.+|+.|++.=.. .++.-|.|.+.
T Consensus 28 ~~nalS~~fP~GE~fFi~sv-r~~~~~i~Dp~L~~~v~~FIgQEa~H~reH~~~n~~l~~~G~~~~~ 93 (251)
T pfam10118 28 FFNALSLLFPAGERFFIDSV-REARPLIKDPKLAEDVRGFIGQEAMHSREHDKYNDALEAHGYDVEP 93 (251)
T ss_pred HHHHHHHCCCCCHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99998851435549999999-9987538999999999999999999999999999999980999079
No 25
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=53.56 E-value=16 Score=16.60 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHC
Q ss_conf 489899999999999997763677777788887652868999999999999999999999999982-3763689999950
Q 537021.9.peg.7 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYRE 151 (196)
Q Consensus 73 ~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl-~~d~~eif~~~~~ 151 (196)
.++++-|....+.+...+-++.+.+.-.. .-..+.+..|-+..++..+.-|.-|+.-+-.+.+.| |....+.+...+.
T Consensus 11 ~~p~~~~~tLi~~i~~~ad~elv~~~r~~-eW~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~ 89 (265)
T COG3396 11 WMPEAYRRTLIRLISQLADSELVLALREG-EWLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRD 89 (265)
T ss_pred HCCHHHHHHHHHHHHHHCCHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 27999999999999983216888724578-63146860899999999989988689999999999669875989999864
No 26
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=53.36 E-value=16 Score=16.58 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 8999999999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196)
Q Consensus 76 ~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196)
+.++-+=.-+++.+ .+.--.+-.. .+.++++.||.+.||...+-.|+.|-+.|-.+-..++..+
T Consensus 99 ~~~~llD~Llv~a~--IEARscERF~-lLa~~l~D~eL~~FY~~L~~SEarH~~~yl~LA~~~~~~~ 162 (180)
T cd07910 99 EPERLLDRLLVAAL--IEARSCERFA-LLAPALPDPELKKFYRGLLESEARHYELFLDLARKYFDEE 162 (180)
T ss_pred CHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 71889999999999--9855676899-9985588689999999999999889999999999887866
No 27
>cd01054 consensus
Probab=48.06 E-value=20 Score=16.04 Aligned_cols=113 Identities=18% Similarity=0.127 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCHH--HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999998504983346734--61685204014898999999999999977636777777888876528689999999
Q 537021.9.peg.7 41 WAWEKYLSACNNHWMPTEVPMQ--DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 (196)
Q Consensus 41 ~~~~~yk~~~~~fW~peEI~l~--~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~ 118 (196)
..+.-|-++.+.-+.--+=.+. .-.. ..+.|++.=+.+++..|+-+.-++-..+.+. ..+.+..+.++++.++.
T Consensus 49 ~~yr~Y~~~q~~~e~~~~~~~~~~~r~~---~~~~l~~~w~~~l~~~l~~~~~~Eyga~~~~-a~~~r~~~~~~i~n~~~ 124 (296)
T cd01054 49 LWYRTYVKMQAEKEEYVEGLLDAAERRG---LAEALDPEWRETLKRHLGPLRYVEYGAFMAS-AYIARYAPGDTIRNAAA 124 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHH
T ss_conf 8899999998899999999999999669---6200899999999999730538999999989-99998657699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC---H---HHHHHHHHCCHHHHH
Q ss_conf 99999999999999999982376---3---689999950999999
Q 537021.9.peg.7 119 RQAFEEAVHSHTFQYIITSLGLD---E---GELFNMYREVPSITA 157 (196)
Q Consensus 119 ~q~~~E~iHs~sYs~il~tl~~d---~---~eif~~~~~~p~i~~ 157 (196)
+|++-|..|++--+++..-|..+ . +.--.++.++|.-+-
T Consensus 125 ~~a~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~~k~~w~~dp~wq~ 169 (296)
T cd01054 125 FQALDELRHAQYIAYLRLELAKNYPDFGGGDDAKRAWTEDPAWQG 169 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHH
T ss_conf 998888889999999999986407998865599999850888898
No 28
>pfam10749 DUF2534 Protein of unknown function (DUF2534). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=47.75 E-value=20 Score=16.01 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999999999997763677777788887652868--99-99999999999999999999999
Q 537021.9.peg.7 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP--EC-RQYLLRQAFEEAVHSHTFQYIIT 136 (196)
Q Consensus 75 t~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~p--E~-~~~~~~q~~~E~iHs~sYs~il~ 136 (196)
|.+-|.|+...+.-|..+-+.|++....++...-..| ++ ..++..|.+|-.+.|-+++.++.
T Consensus 9 ~~~gkkFl~~l~~Vfiia~tVvtrAtigGVieqYniP~s~Wt~sMy~~Q~~MI~vYS~VFT~Lla 73 (85)
T pfam10749 9 TRDGKKFLLALVVVFIIALTVVGRATFGGVIEQYNMPLSHWTTSMFILQGAMVFVYSLVFTFLLA 73 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40001639999999999999987777552698718975441699999988999999999999999
No 29
>pfam03405 FA_desaturase_2 Fatty acid desaturase.
Probab=43.71 E-value=23 Score=15.61 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=57.4
Q ss_pred HHCCCCCCCCHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHHH---------------HH---HHHHHHHHHHHHH
Q ss_conf 5049833467346168520401489------8999999999999977---------------63---6777777888876
Q 537021.9.peg.7 51 NNHWMPTEVPMQDDLALWKSKNGLT------DDERLMIKRNLGFFAS---------------SE---SLVANNIVLAIYR 106 (196)
Q Consensus 51 ~~fW~peEI~l~~D~~dw~~~~~Lt------~~Er~~~~~iL~ffs~---------------~D---~~v~~nl~~~i~~ 106 (196)
...|++||=-=+.=+.+|-. || .-|+.....+-+.|.. -+ -+--+|.+ .+.+
T Consensus 104 v~~WTAEEnRHg~~Lr~YL~---ltr~VD~~~lE~~~~~~i~~G~~p~~~~~py~~~vYtSFQElAT~ISH~NTg-rla~ 179 (330)
T pfam03405 104 TRAWTAEENRHGDLLNKYLY---LSGRVDMRQIEKTIQYLIGSGMDPGTENNPYLGFIYTSFQERATFISHGNTA-RLAK 179 (330)
T ss_pred CCCCCCCCCHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH-HHHH
T ss_conf 17526443414789976555---2246785999999999982788998766810433045578887651141199-9988
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHH
Q ss_conf 528689999999999999999999999999823-7636899999
Q 537021.9.peg.7 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG-LDEGELFNMY 149 (196)
Q Consensus 107 ~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~-~d~~eif~~~ 149 (196)
..-.|-+..+++..+.-|+.|...|+.+++.+. .||+...-++
T Consensus 180 ~~GDp~la~i~~rIAaDE~rH~~fYr~iv~~~~eldPd~~m~A~ 223 (330)
T pfam03405 180 EHGDTKLAQICGTIASDEKRHETAYTKIVEKLFELDPDGTVLAL 223 (330)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 72998999999887433778999999999999802932899999
No 30
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=39.31 E-value=27 Score=15.17 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 999999999776367777---778888765286899999999999999999999999998237636
Q 537021.9.peg.7 81 MIKRNLGFFASSESLVAN---NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 (196)
Q Consensus 81 ~~~~iL~ffs~~D~~v~~---nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~ 143 (196)
+-+.++..+...||-.+- ++...+.-.-+.||++..+.-.+.+|--|.+..+.++-.||-++.
T Consensus 14 ~A~~l~~~~gG~~gElsA~~qYl~q~~~~~~~~~~i~~ll~dIa~eEm~HlE~i~~~I~~Lgg~p~ 79 (154)
T cd07908 14 YAELLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPR 79 (154)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999984896168999999999897078984799999999999999999999999999189984
No 31
>KOG1924 consensus
Probab=36.16 E-value=30 Score=14.85 Aligned_cols=118 Identities=13% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCCC--C--HHH-CCCCCCHHHHHH------------HHHHHHHCC-CCCCCC-HHHHHHHHCCCCCCCH
Q ss_conf 67832022427766--8--220-087627899999------------999985049-833467-3461685204014898
Q 537021.9.peg.7 16 RVNVDDKRMLNARS--D--VNQ-LLPLKYGWAWEK------------YLSACNNHW-MPTEVP-MQDDLALWKSKNGLTD 76 (196)
Q Consensus 16 ~~~~~~~~ii~~~~--~--~~~-l~PikY~~~~~~------------yk~~~~~fW-~peEI~-l~~D~~dw~~~~~Lt~ 76 (196)
+..+.+-+|+++++ + ++. =+-+-|.++-.. ..++.-.+- -+|-++ ++.=+..| +.|.+
T Consensus 687 kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaey---e~l~e 763 (1102)
T KOG1924 687 KKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEY---EDLPE 763 (1102)
T ss_pred HHHHHHHEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCC
T ss_conf 434212123166878778988851348799997898520488878999999998589999999999998742---67997
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999--999977636777777888876528689999999999999999999999999823
Q 537021.9.peg.7 77 DERLMIKRN--LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 (196)
Q Consensus 77 ~Er~~~~~i--L~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~ 139 (196)
.|+..+... =+.---++.+ ..-+.|...+.+---.++...-||+|...|++||.+++-+-
T Consensus 764 ~EQF~vvm~~vkrL~pRL~~i---lFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvL 825 (1102)
T KOG1924 764 PEQFVVVMSQVKRLRPRLSAI---LFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVL 825 (1102)
T ss_pred HHHHHHHHHHCCCCCHHHHHH---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788767876414667037778---88844999985248179999999999984164899999999
No 32
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=34.22 E-value=32 Score=14.65 Aligned_cols=111 Identities=25% Similarity=0.249 Sum_probs=63.6
Q ss_pred HHCCCCC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC------HHHHHHHHHHHHH---------------
Q ss_conf 2008762--7899999999985049833467346168520401489------8999999999999---------------
Q 537021.9.peg.7 32 NQLLPLK--YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT------DDERLMIKRNLGF--------------- 88 (196)
Q Consensus 32 ~~l~Pik--Y~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt------~~Er~~~~~iL~f--------------- 88 (196)
+.++... -+-+|.-| ...|++||=-=+.=+.+|-. +| +-||...-.+-+.
T Consensus 82 ~~~~g~dd~~~~~W~~W----v~~WTAEEnRHg~~Lr~YL~---~tr~VDp~~lE~~r~~~i~~G~~~~~~~~p~~~~~Y 154 (297)
T cd01050 82 NRLFGLDDESPTAWARW----VRRWTAEENRHGDLLNKYLY---LTGRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVY 154 (297)
T ss_pred HHHHCCCCCCCCCHHHH----CCCCCCCCCHHHHHHHHHEE---ECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 98817666689825652----06526442403788863100---056778299999999998378899998778999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHC
Q ss_conf 9776367777778-8887652--868999999999999999999999999982-3763689999950
Q 537021.9.peg.7 89 FASSESLVANNIV-LAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYRE 151 (196)
Q Consensus 89 fs~~D~~v~~nl~-~~i~~~i--~~pE~~~~~~~q~~~E~iHs~sYs~il~tl-~~d~~eif~~~~~ 151 (196)
-|.-+ ..++ +. -+..+.. -.|-+..++++.+.-|+.|...|..+++.+ -.||++...++..
T Consensus 155 tsfQE-lAT~-IsH~Nt~rla~~gDp~l~~i~~rIA~DE~rH~~fYr~iv~~~le~dPd~~~~A~~~ 219 (297)
T cd01050 155 TSFQE-LATR-ISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDGAVLAFAD 219 (297)
T ss_pred HHHHH-HCCH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99987-5013-33623888750599799999988751688999999999999983393679999999
No 33
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I; InterPro: IPR010963 This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=27.87 E-value=41 Score=13.96 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=50.2
Q ss_pred HCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCCCCCCHHHH
Q ss_conf 52868999--999999999999999999999982-37636899999509999999999999-998530113344793348
Q 537021.9.peg.7 107 HLSNPECR--QYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 (196)
Q Consensus 107 ~i~~pE~~--~~~~~q~~~E~iHs~sYs~il~tl-~~d~~eif~~~~~~p~i~~K~~~~~k-~~~~i~~~~~~~~~~e~~ 182 (196)
-|..|+.+ -++.+-...==+-|+.+.-+++.+ |.|++ -++|+.|.+| +++.++=.+|-.++||-.
T Consensus 47 RF~~p~W~~~P~Fd~lkQ~YLL~S~~~~~~~~~~eG~d~k-----------~r~R~~Ff~~Q~inA~aPSNFL~TNPeal 115 (541)
T TIGR01838 47 RFSDPAWSSNPFFDFLKQSYLLTSSWLLELVDAVEGLDPK-----------TRRRIEFFTRQLINAMAPSNFLATNPEAL 115 (541)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHHHHCCCCCHHHCCHHHH
T ss_conf 8987444237515799999999999999999986188820-----------22799999999998505314121157999
Q ss_pred HHHHH
Q ss_conf 99999
Q 537021.9.peg.7 183 SRILT 187 (196)
Q Consensus 183 ~~~l~ 187 (196)
++.|.
T Consensus 116 r~~v~ 120 (541)
T TIGR01838 116 RLTVE 120 (541)
T ss_pred HHHHH
T ss_conf 99998
No 34
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=27.14 E-value=17 Score=16.49 Aligned_cols=25 Identities=8% Similarity=0.336 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 9831024666306766783202242
Q 537021.9.peg.7 1 MANNTGLSPIQAGEKRVNVDDKRML 25 (196)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~~~~ii 25 (196)
||||.|.+.+++.+.+++.-..|+.
T Consensus 45 vNSD~SV~RLKG~~RPi~~e~~Ra~ 69 (144)
T TIGR02199 45 VNSDASVKRLKGETRPINSEEDRAE 69 (144)
T ss_pred ECCHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 6170455305768989157767899
No 35
>pfam11477 PM0188 Sialyltransferase PMO188. PMO188 is a sialyltransferase from P.multocida. It transfers sialic acid from cytidine 5'-monophosphonuraminic acid to an acceptor sugar. It has important catalytic residues such as Asp141, His311, Glu338, Ser355 and Ser356.
Probab=25.74 E-value=15 Score=16.93 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=55.3
Q ss_pred CCCCCHHHCCCCCCHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 776682200876278999-9999998504983346734616852040148989999999999999776367777778888
Q 537021.9.peg.7 26 NARSDVNQLLPLKYGWAW-EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 (196)
Q Consensus 26 ~~~~~~~~l~PikY~~~~-~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i 104 (196)
.++++-.++.|-+|.-+. |+..+....+=.-+=+.=.--.-+|-.+.++++.+|.++..+++|=... ++........
T Consensus 162 ~~rY~w~~lypt~YHfLr~Dyf~~~~~L~~Lk~yL~~~~kqM~Wd~f~~fn~eQk~lfl~ivgf~~E~--~q~q~~~s~~ 239 (381)
T pfam11477 162 LNRYLWNNLYDTQYHFLSADYFEQHPKLQPLKRYLSKNYKQMDWTCYPRFNAEQKQLFLEIVGFNNEL--ENLQYLLSQH 239 (381)
T ss_pred HHHHHHHHCCCCHHHEEEHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCHHH--HHHHHHHCCC
T ss_conf 54200544177433101166664184430699998421324572232016999999999985789899--9998752647
Q ss_pred --------HHHCCCHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_conf --------765286899999999999---99999999999999
Q 537021.9.peg.7 105 --------YRHLSNPECRQYLLRQAF---EEAVHSHTFQYIIT 136 (196)
Q Consensus 105 --------~~~i~~pE~~~~~~~q~~---~E~iHs~sYs~il~ 136 (196)
...--..|.+-+|+.|-- -|+++..|=-++-.
T Consensus 240 ~nFiFtGTttw~g~~e~~eyyAqqQinlln~a~n~~s~~y~g~ 282 (381)
T pfam11477 240 NNFIFTGTTTWNGDQEKLEYYAQQQINLLNEAQNPHSPHYIGN 282 (381)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCC
T ss_conf 7549971234567614778889999999874138899643166
No 36
>pfam06514 PsbU Photosystem II 12 kDa extrinsic protein (PsbU). This family consists of several photosystem II 12 kDa extrinsic protein (PsbU) proteins from cyanobacteria and algae. PsbU is an extrinsic protein of the photosystem II complex of cyanobacteria and red algae. PsbU is known to stabilize the oxygen-evolving machinery of the photosystem II complex against heat-induced inactivation.
Probab=25.52 E-value=37 Score=14.26 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=34.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 200876278999999999850498334673461685204014898999999999999977636
Q 537021.9.peg.7 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 (196)
Q Consensus 32 ~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~ 94 (196)
++=+|=-||.+ ..+...+- | -+=-+|+-+- ..||+.+|..+++.+..|+..+-
T Consensus 67 f~q~pGmYPtl---A~kIv~~~--P--Y~~v~Dvl~i---pgLse~qk~~l~~~~~~Ftvt~p 119 (135)
T pfam06514 67 FRQLPGMYPTL---AGKIVKNA--P--YKSVEDVLNI---PGLSERQKALLKKYLDNFTVTEP 119 (135)
T ss_pred HHHCCCCCHHH---HHHHHHCC--C--CCCHHHHHCC---CCCCHHHHHHHHHHHCCCEECCC
T ss_conf 98688846789---99997379--9--6779999718---89899999999986605624686
No 37
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=25.41 E-value=45 Score=13.68 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=41.2
Q ss_pred HCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04983346734616852040148989999999999999776367777778888765286899999999999999999999
Q 537021.9.peg.7 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 (196)
Q Consensus 52 ~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sY 131 (196)
-||.|-|--.+.=.+--. ..|+..|+.|+..+ -...+.++.|..+.=...++-+|+.||+.=
T Consensus 28 ~hw~~G~p~~T~vfNaLs--~LlP~GE~fFvd~v----------------~a~r~r~sdp~L~~dv~gFI~QEamHSraH 89 (280)
T COG3687 28 RHWVPGEPVATHVFNALS--LLLPAGERFFVDSV----------------KAYRPRLSDPQLRDDVQGFIGQEAMHSRAH 89 (280)
T ss_pred CCCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHH----------------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788799739999998998--75566069999999----------------999875268789999999988887778888
Q ss_pred HHH---HHHHCCCHHH
Q ss_conf 999---9982376368
Q 537021.9.peg.7 132 QYI---ITSLGLDEGE 144 (196)
Q Consensus 132 s~i---l~tl~~d~~e 144 (196)
+.. +++-+.+-.|
T Consensus 90 ~~yn~~~~a~~~p~~e 105 (280)
T COG3687 90 AGYNDRLDAQGTPFAE 105 (280)
T ss_pred HHHHHHHHHCCCCHHH
T ss_conf 8799999965896088
No 38
>pfam02332 Phenol_Hydrox Methane/Phenol/Toluene Hydroxylase. Bacterial phenol hydroxylase is a multicomponent enzyme that catabolizes phenol and some of its methylated derivatives. This Pfam family contains both the P1 and P3 polypeptides of phenol hydroxylase and the alpha and beta chain of methane hydroxylase protein A.
Probab=24.66 E-value=47 Score=13.58 Aligned_cols=83 Identities=20% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHH
Q ss_conf 89899999999999997763677777788887652868999999999999999999999999982376368----99999
Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 (196)
Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e----if~~~ 149 (196)
|++.=+.+++..++-+.-.+-....+. ..+.+....++++.++.+|++-|..|.+-=.+++.-+..+..+ -=..+
T Consensus 67 l~~~w~~~l~~~l~~~~~~E~ga~~~~-a~~~r~~~~~~~~n~~~~~a~DelR~~Q~~~~~~~~l~~~~~~~~~~~k~~w 145 (233)
T pfam02332 67 LDPGWRETLKRHYGPLRYVEYGANMAN-AYIARFAPAPTIRNCATFQALDELRHLQRQAYFLHELAKADPDFDWGQRAYW 145 (233)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 999999999999701218999999989-9999865889999999998879999999999999877522888684899988
Q ss_pred HCCHHHHH
Q ss_conf 50999999
Q 537021.9.peg.7 150 REVPSITA 157 (196)
Q Consensus 150 ~~~p~i~~ 157 (196)
.++|..+-
T Consensus 146 ~~dp~wq~ 153 (233)
T pfam02332 146 TNDPAWQG 153 (233)
T ss_pred HHCCHHHH
T ss_conf 61833789
No 39
>KOG4093 consensus
Probab=24.41 E-value=47 Score=13.55 Aligned_cols=66 Identities=17% Similarity=0.368 Sum_probs=41.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHCC-HHH-------------HHHHHH---
Q ss_conf 65286899999999999999999999999998237-------636899999509-999-------------999999---
Q 537021.9.peg.7 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-------DEGELFNMYREV-PSI-------------TAKANW--- 161 (196)
Q Consensus 106 ~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~-------d~~eif~~~~~~-p~i-------------~~K~~~--- 161 (196)
.+...+++.+..+.-| .-|+++|-.+|.++-. -+++||+.+++. |.+ ..|..|
T Consensus 10 ~~~Nd~~IEm~wAvkA---~e~aevy~~Li~sv~~s~LkLtk~dD~Iy~~fr~~Fp~l~v~~~t~~elKs~~aKe~WR~F 86 (144)
T KOG4093 10 KYGNDEDIEMAWAVKA---VEQAEVYWNLITSVDGSVLKLTKYDDEIYEAFRSSFPELKVEEVTEDELKSAGAKEKWRPF 86 (144)
T ss_pred HCCCHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHH
T ss_conf 6277188999999999---9999999999970681013224321999999987550104010688897241068889999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999985301133
Q 537021.9.peg.7 162 ALQYTQTLSSPSF 174 (196)
Q Consensus 162 ~~k~~~~i~~~~~ 174 (196)
+.++-+.+.|-++
T Consensus 87 ~~~f~~kvdDyn~ 99 (144)
T KOG4093 87 CEKFEKKVDDYNF 99 (144)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9998743123454
No 40
>pfam02915 Rubrerythrin Rubrerythrin. This domain has a ferritin-like fold.
Probab=23.14 E-value=50 Score=13.40 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999776367777778888765286--89999999999999999999999999823763
Q 537021.9.peg.7 85 NLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196)
Q Consensus 85 iL~ffs~~D~~v~~nl~~~i~~~i~~--pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196)
+|++=..+++. +.+....+...... |+++-++...+-+|..|.+...-++..++.+.
T Consensus 2 ~L~~Ai~~E~~-a~~~Y~~~A~~a~~~g~~i~~~F~~lA~~E~~Ha~~~~~l~~~~~~~~ 60 (137)
T pfam02915 2 ILEYAIAGESS-ARRRYKELAEKAKGEGPQIAELFEEMAEEERRHAGFLNKLLKDLFPGL 60 (137)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 69999970999-999999999999784889999999999999999999999987634665
No 41
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; InterPro: IPR008434 This family represents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions . This enzyme is believed to utilise a binuclear iron centre and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacteria, which are differentially regulated based on the levels of copper and oxygen , . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria. CRD1 (AcsF) is required for the maintenance of photosystem I and its associated light-harvesting complexes in copper-deficient (-Cu) and oxygen-deficient (-O(2)) Chlamydomonas reinhardtii cells and is localised to the thylakoid membrane. The family also contains the Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa) AcsF protein .; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=22.83 E-value=37 Score=14.24 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88876528689--999999999999999999999999823
Q 537021.9.peg.7 102 LAIYRHLSNPE--CRQYLLRQAFEEAVHSHTFQYIITSLG 139 (196)
Q Consensus 102 ~~i~~~i~~pE--~~~~~~~q~~~E~iHs~sYs~il~tl~ 139 (196)
-.+.+.+.++. +.-++.-.|==|+.|+=--.--+..++
T Consensus 99 kEl~r~~~n~~PVva~lf~lMARDEARHAGFlN~AL~~~~ 138 (344)
T TIGR02029 99 KELERRLKNEDPVVAELFQLMARDEARHAGFLNKALKDFG 138 (344)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9973057898717899976521255566778988888715
No 42
>pfam06175 MiaE tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=22.73 E-value=51 Score=13.34 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH
Q ss_conf 98999999999999977636777777888876528689999999999999999999999999823763689999950999
Q 537021.9.peg.7 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 (196)
Q Consensus 75 t~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~ 154 (196)
.+.++-+=.-+++.+.-+=| .+-.. .+.+++ .+|.+.||...+-.|+.|-..|-.+-..++..++
T Consensus 108 ~~~~rllD~Llv~AlIEARS--cERF~-lLa~~l-d~eL~~FY~~L~~SEarH~~~yl~LA~~~~~~~~----------- 172 (199)
T pfam06175 108 HEPQRLLDKLIVGAYIEARS--CERFA-LLAPHL-DAELAKFYVSLLRSEARHFQDYLKLAYQYFDEED----------- 172 (199)
T ss_pred CCHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----------
T ss_conf 87488999999999997656--77999-999866-6999999999999998899999999998868767-----------
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999985
Q 537021.9.peg.7 155 ITAKANWALQYTQT 168 (196)
Q Consensus 155 i~~K~~~~~k~~~~ 168 (196)
|.+|.++....-..
T Consensus 173 V~~Rl~~~l~~Ea~ 186 (199)
T pfam06175 173 VSERVAYFGAVEAE 186 (199)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 43
>pfam11239 DUF3040 Protein of unknown function (DUF3040). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.06 E-value=53 Score=13.26 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48989999999999999776367777778
Q 537021.9.peg.7 73 GLTDDERLMIKRNLGFFASSESLVANNIV 101 (196)
Q Consensus 73 ~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~ 101 (196)
.|||.||+.+..+=.-+..-|---...+.
T Consensus 2 pLSe~Eqr~L~eiE~~L~~eDP~fa~~~~ 30 (82)
T pfam11239 2 PLSEHEQRRLEEIERALYAEDPKFAAAVR 30 (82)
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHC
T ss_conf 99889999999999999843979999751
No 44
>pfam06874 FBPase_2 Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.
Probab=21.62 E-value=54 Score=13.20 Aligned_cols=10 Identities=50% Similarity=0.743 Sum_probs=4.5
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999823
Q 537021.9.peg.7 130 TFQYIITSLG 139 (196)
Q Consensus 130 sYs~il~tl~ 139 (196)
-|+|||+.|.
T Consensus 134 ~fayIieELL 143 (641)
T pfam06874 134 DFAYIIEELL 143 (641)
T ss_pred HHHHHHHHHH
T ss_conf 6899999995
No 45
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=21.26 E-value=55 Score=13.15 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCH----HHHHHHHHHHHHHHHHH
Q ss_conf 9999999982376368999995099----99999999999998530
Q 537021.9.peg.7 129 HTFQYIITSLGLDEGELFNMYREVP----SITAKANWALQYTQTLS 170 (196)
Q Consensus 129 ~sYs~il~tl~~d~~eif~~~~~~p----~i~~K~~~~~k~~~~i~ 170 (196)
++=+=-|-++.++|. .|...+..| .+++|..|+.+.|..+.
T Consensus 182 ~~QAA~LAA~LPnP~-~y~~~r~~~nvhi~v~~k~~~I~~~M~~~~ 226 (228)
T TIGR02070 182 RSQAARLAAVLPNPK-KYKENRPGPNVHIYVRKKARWILKRMGYVE 226 (228)
T ss_pred HHHHHHHHHHCCCCH-HHHHCCCCCCEEEEEHHHHHHHHHHHHHCC
T ss_conf 889999987415821-223106898516641165689998643036
No 46
>COG3943 Virulence protein [General function prediction only]
Probab=20.68 E-value=56 Score=13.07 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH----------
Q ss_conf 89899999999999997763677777-78888765286899999999999999999999999----9982----------
Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI----ITSL---------- 138 (196)
Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~n-l~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~i----l~tl---------- 138 (196)
+-.+||..|.+++-.|+.+-.....- -...|...+++ ..+...+.|..-|.||+++=+.. +.++
T Consensus 144 iraser~vy~rv~eifa~aady~ps~qet~rFFatvQN-KLH~A~tgqTAAElih~RADask~~MGLTtfkga~v~k~dv 222 (329)
T COG3943 144 IRASERRVYLRVREIFALAADYNPSLQETTRFFATVQN-KLHFACTGQTAAELIHQRADASKPHMGLTTFKGAIVRKNDV 222 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCHHHH
T ss_conf 77778999999999999863138636889899999988-88888605529999997411378776740024652312237
Q ss_pred -----CCCHHH------HHHHHHCCHHHHHH-------HHHHHHHHHH
Q ss_conf -----376368------99999509999999-------9999999985
Q 537021.9.peg.7 139 -----GLDEGE------LFNMYREVPSITAK-------ANWALQYTQT 168 (196)
Q Consensus 139 -----~~d~~e------if~~~~~~p~i~~K-------~~~~~k~~~~ 168 (196)
.+.++| +-|+|.+..+++.. -+|+.+.-.+
T Consensus 223 ~iAKNYLtedEv~~lnrlVna~lD~AE~~A~r~~pm~mrDW~~~LdkF 270 (329)
T COG3943 223 KIAKNYLTEDEVFRLNRLVNAFLDLAEIKAQRQSPMYMRDWIAELDKF 270 (329)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 898700478889999889999998999998773872788999999998
Done!