Query 537021.9.peg.74_1 Match_columns 196 No_of_seqs 127 out of 733 Neff 6.2 Searched_HMMs 33803 Date Mon May 23 07:59:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_74.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1h0o_A Ribonucleoside-diphosp 100.0 3.9E-41 1.4E-45 290.6 17.9 153 13-168 62-217 (218) 2 >1mxr_A Ribonucleotide reducta 100.0 1E-37 3.1E-42 268.0 19.5 180 12-194 5-202 (375) 3 >1syy_A Ribonucleoside-diphosp 100.0 2.7E-36 8E-41 258.6 20.3 182 11-193 7-189 (346) 4 >2p1i_A Ribonucleotide reducta 100.0 1.6E-34 4.7E-39 247.0 8.2 140 13-155 22-161 (161) 5 >2rcc_A Ribonucleoside-diphosp 100.0 3.3E-33 9.9E-38 238.3 13.4 138 11-152 9-149 (149) 6 >1r2f_A Protein (ribonucleotid 100.0 6.3E-32 1.9E-36 229.9 15.3 125 25-152 1-128 (128) 7 >2o1z_A Ribonucleotide reducta 100.0 2.4E-32 7.2E-37 232.6 11.8 123 30-155 1-123 (123) 8 >1jk0_A RNR Y2, ribonucleoside 100.0 8.2E-32 2.4E-36 229.1 9.3 123 31-155 2-124 (124) 9 >1jk0_B RNR Y4, ribonucleoside 100.0 3.3E-31 9.9E-36 225.1 9.7 111 32-145 3-113 (114) 10 >3dhz_A Ribonucleotide reducta 100.0 6.3E-30 1.9E-34 216.7 15.1 115 35-152 2-118 (118) 11 >3ee4_A Probable ribonucleosid 100.0 4.1E-27 1.2E-31 198.1 15.0 138 30-171 16-156 (323) 12 >3chh_A P-aminobenzoate N-oxyg 99.7 6.4E-18 1.9E-22 137.5 2.3 128 13-143 12-155 (336) 13 >1mty_D Methane monooxygenase 96.8 0.014 4.3E-07 36.3 9.0 113 41-154 48-166 (248) 14 >3ge3_A Toluene-4-monooxygenas 95.2 0.24 7.1E-06 28.3 9.5 84 73-157 84-171 (374) 15 >1za0_A Possible acyl-[acyl-ca 93.1 0.45 1.3E-05 26.4 7.0 79 51-140 44-123 (275) 16 >2inp_A Phenol hydroxylase com 90.5 1.2 3.6E-05 23.6 8.6 63 79-142 6-68 (145) 17 >1jk0_A RNR Y2, ribonucleoside 90.2 0.13 3.8E-06 30.1 1.6 135 47-189 90-230 (295) 18 >2v8t_A Manganese-containing p 89.2 1.5 4.5E-05 23.0 6.8 47 95-141 18-64 (91) 19 >2inc_A Toluene, O-xylene mono 86.1 2.3 6.9E-05 21.8 9.8 68 74-142 4-71 (116) 20 >2fzf_A Hypothetical protein; 76.3 5.1 0.00015 19.5 7.2 60 82-142 21-80 (90) 21 >1zpy_A Hypothetical protein N 73.7 6 0.00018 19.1 9.9 73 74-149 13-85 (95) 22 >2e0z_A Virus-like particle; b 64.9 1.6 4.6E-05 22.9 0.0 67 82-149 20-86 (345) 23 >2uw1_A Desaturase, plastid de 61.4 11 0.00031 17.4 8.6 47 103-149 28-75 (166) 24 >1jk0_B RNR Y4, ribonucleoside 61.1 11 0.00031 17.4 7.5 126 53-186 2-132 (199) 25 >2zet_C Melanophilin; complex, 47.6 14 0.00042 16.6 2.5 27 73-99 16-42 (113) 26 >1vjx_A Putative ferritin-like 46.9 18 0.00053 15.9 8.6 58 82-141 15-72 (157) 27 >1cqx_A Flavohemoprotein; glob 44.3 13 0.00039 16.8 1.9 64 74-139 2-65 (150) 28 >2inc_B Toluene, O-xylene mono 43.5 20 0.00059 15.6 7.8 85 72-157 104-194 (322) 29 >3ge3_B Toluene-4-monooxygenas 42.3 21 0.00062 15.5 6.7 83 74-157 2-90 (219) 30 >1udd_A Transcriptional regula 37.7 25 0.00073 15.0 11.5 90 72-166 32-121 (226) 31 >2ib0_A Conserved hypothetical 37.3 25 0.00074 15.0 8.7 64 76-141 16-79 (170) 32 >2vhb_A Hemoglobin; heme, resp 35.8 16 0.00047 16.2 1.3 65 74-140 2-66 (146) 33 >1or4_A Heme-based aerotactic 35.0 27 0.0008 14.7 9.3 90 63-155 32-122 (178) 34 >2wy4_A Single domain haemoglo 34.9 27 0.0008 14.7 4.7 65 74-140 1-65 (140) 35 >1jf3_A Monomer hemoglobin com 34.9 24 0.00072 15.0 2.1 65 73-139 1-70 (147) 36 >1mty_B Methane monooxygenase 34.4 28 0.00082 14.7 7.1 66 72-138 99-165 (354) 37 >2vgl_A Adaptor protein comple 33.1 25 0.00074 15.0 1.9 34 75-108 37-70 (72) 38 >2oc5_A Hypothetical protein; 31.6 31 0.00091 14.4 8.5 72 63-142 21-92 (244) 39 >1gvh_A Flavohemoprotein; oxid 28.0 24 0.00071 15.1 1.1 65 74-140 2-66 (148) 40 >2qzc_A Transcriptional activa 27.9 35 0.001 14.0 9.4 99 58-165 24-122 (214) 41 >2oh3_A Rubrerythrin, COG1633: 25.5 39 0.0012 13.7 8.8 39 102-140 113-151 (167) 42 >2w31_A Globin; oxygen transpo 25.2 40 0.0012 13.6 5.5 78 72-152 11-89 (162) 43 >2qee_A BH0493 protein; amidoh 23.2 28 0.00084 14.6 0.8 22 44-65 105-126 (161) 44 >2ovj_A Mgcracgap, RAC GTPase- 22.3 44 0.0013 13.3 1.6 40 72-111 30-74 (113) 45 >2oif_A Horvu GLB1, non-legume 21.7 46 0.0014 13.2 4.6 68 72-141 8-84 (162) 46 >1mhy_B Methane monooxygenase 20.1 50 0.0015 13.0 9.6 84 72-156 99-190 (357) No 1 >>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:1-218) Probab=100.00 E-value=3.9e-41 Score=290.57 Aligned_cols=153 Identities=29% Similarity=0.526 Sum_probs=146.9 Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67667832022427766822008762789999999998504983346734616852040148989999999999999776 Q 537021.9.peg.7 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 (196) Q Consensus 13 ~~~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~ 92 (196) ...+.+.++++|++++++.++++|++|||+|++|++++++||+|+||+|++|+.||++ ||+.||++++++|+||+++ T Consensus 62 ~~~~~~~~~e~il~~~~~~~~~~piky~~~~~lykk~~~~fW~peEi~ls~D~~dw~~---Lt~~Er~~i~~~la~fa~~ 138 (218) T 1h0o_A 62 APTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAAS 138 (218) T ss_dssp ---CCSCTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHH---SCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHH T ss_conf 2467876667664688775233387777999999999874898330681754999986---9999999999999999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 3677777788887652868999999999999999999999999982376368---999995099999999999999985 Q 537021.9.peg.7 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 (196) Q Consensus 93 D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e---if~~~~~~p~i~~K~~~~~k~~~~ 168 (196) |++|++|+...|++.++.||+++||++|++||+||+++|++|+++|+.|++| +|+++.++|+|++|++|+.+|+++ T Consensus 139 D~iv~~nl~~~~~~~i~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~d~~e~~~if~~~~~~p~i~~K~~~~~~~~~~ 217 (218) T 1h0o_A 139 DGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGD 217 (218) T ss_dssp HHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999854899887547979999999999999999999999999985013778887778988768899998988863044 No 2 >>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} (A:) Probab=100.00 E-value=1e-37 Score=267.99 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=165.3 Q ss_pred CCCCCCCCCCCCCCCCC-CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 06766783202242776-68220087627899999999985049833467346168520401489899999999999997 Q 537021.9.peg.7 12 AGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 (196) Q Consensus 12 ~~~~~~~~~~~~ii~~~-~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs 90 (196) .+..+...++++|++|+ ++..++.|++|||+|++|++++++||+|+||++++|+.||++ ||+.||++++++|++|+ T Consensus 5 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~y~~~~~ly~~~~~~~W~p~ei~~s~D~~d~~~---L~~~er~~~~~~l~~l~ 81 (375) T 1mxr_A 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81 (375) T ss_dssp SCCSCCCTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHT---SCHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHH T ss_conf 679996310156415898773337865567999999999867899502272431899977---99999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 76367777778888765286899999999999999999999999998237636899999509999999999999998530 Q 537021.9.peg.7 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 (196) Q Consensus 91 ~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i~ 170 (196) .+|++|++++...+++.++.||+++++++|+++|+||+++|++++++++.+++|+|++++++|.|++|++|+.++++... T Consensus 82 ~~D~~v~~~~~~~l~~~~~~~e~~~~l~~q~~~E~iH~~~Ys~i~~~l~~~~~e~~~~~~~~~~l~~k~~~i~~~y~~~~ 161 (375) T 1mxr_A 82 LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELI 161 (375) T ss_dssp HHHHHHHHHHHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHCHHHHHHHTTHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH T ss_conf 99999976629988423797799999999999999899999999998736828899999606988999999999866776 Q ss_pred CC-----------------CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 11-----------------3344793348999999999963 Q 537021.9.peg.7 171 SP-----------------SFHYWNKRRRSRILTRSLRFLC 194 (196) Q Consensus 171 ~~-----------------~~~~~~~e~~~~~l~~li~f~~ 194 (196) +. .....+.+.++.++..||+++| T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 202 (375) T 1mxr_A 162 EMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNA 202 (375) T ss_dssp HHHHHHHHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 66789986166754334543332304789999999999999 No 3 >>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:) Probab=100.00 E-value=2.7e-36 Score=258.63 Aligned_cols=182 Identities=52% Similarity=0.944 Sum_probs=168.6 Q ss_pred HCCCCCCCCCCCCCCCCCC-CHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 3067667832022427766-822008762789999999998504983346734616852040148989999999999999 Q 537021.9.peg.7 11 QAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 (196) Q Consensus 11 ~~~~~~~~~~~~~ii~~~~-~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ff 89 (196) -....+.+.++++|++|++ +.++++|++|||+|++|+++.++||+|+||++++|+.||++ .+||+.||+++.++|++| T Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~~~~~p~~y~~~~~ly~~~~~~~W~peei~~~~D~~d~~~-~~L~~~er~~~~~~l~~~ 85 (346) T 1syy_A 7 DGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILLNLGFF 85 (346) T ss_dssp GGGGGSCCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHHHHHHH T ss_pred HCCCCCCCCCCCEEECCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH-CCCCHHHHHHHHHHHHHH T ss_conf 1544556612141258998865451898777999999999976999400276134988854-899999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 77636777777888876528689999999999999999999999999823763689999950999999999999999853 Q 537021.9.peg.7 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 (196) Q Consensus 90 s~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i 169 (196) +.+|++|++++...+++.++.||+++|+++|+++|++|+++|++++++++.+++++|+++.++|++++|++|+.++++.. T Consensus 86 ~~~d~~v~~~l~~~l~~~~~~~e~~~~~~~q~~~E~~H~~~Y~~il~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (346) T 1syy_A 86 STAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKV 165 (346) T ss_dssp HHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHHTTSGG T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999998888998872178599999999999998889999999999846678999999830899999999999866410 Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 011334479334899999999996 Q 537021.9.peg.7 170 SSPSFHYWNKRRRSRILTRSLRFL 193 (196) Q Consensus 170 ~~~~~~~~~~e~~~~~l~~li~f~ 193 (196) .+......+.+..+.++..+++|. T Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~ 189 (346) T 1syy_A 166 LDPNFRTDSVEGLQEFVKNLVGYY 189 (346) T ss_dssp GSTTCCSSSHHHHHHHHHHHHHHH T ss_pred HCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 033312144455899999999999 No 4 >>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:1-161) Probab=100.00 E-value=1.6e-34 Score=246.95 Aligned_cols=140 Identities=26% Similarity=0.461 Sum_probs=131.2 Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 67667832022427766822008762789999999998504983346734616852040148989999999999999776 Q 537021.9.peg.7 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 (196) Q Consensus 13 ~~~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~ 92 (196) ++.+.+.+++.++++++++.+++|++|||+|++|++++++||+|+||++++|+.||++ ||+.||++++++|+||+.+ T Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~pi~y~~~~~ly~~~~~~fW~peEi~~~~D~~d~~~---L~~~e~~~~~~~l~~l~~~ 98 (161) T 2p1i_A 22 DFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---LNVNEKHFIKHVLAFFAAS 98 (161) T ss_dssp -------------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHH---SCTTTHHHHHHHHHHHTTC T ss_pred HHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---CCHHHHHHHHHHHHHHHHH T ss_conf 0656641489655799996234288486999999999976899622475000788986---9999999999999999888 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH Q ss_conf 367777778888765286899999999999999999999999998237636899999509999 Q 537021.9.peg.7 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 (196) Q Consensus 93 D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i 155 (196) |++|++++...+.+.++.||+++++++|+++|+||+++|+++++++++|++++++.|..+|.| T Consensus 99 D~~v~~~i~~~~~~~~~~~e~~~~~~~q~~~E~iH~~~Ys~il~~l~~d~~~~~~~~~~~~~i 161 (161) T 2p1i_A 99 DGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENI 161 (161) T ss_dssp -----CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSC T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 879987665321101134589999999999998889999999986325526678899988304 No 5 >>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:1-149) Probab=100.00 E-value=3.3e-33 Score=238.27 Aligned_cols=138 Identities=21% Similarity=0.411 Sum_probs=128.8 Q ss_pred HCCCCCCCCCCCCCCCCCC-CHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 3067667832022427766-822008762789999999998504983346734616852040148989999999999999 Q 537021.9.peg.7 11 QAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 (196) Q Consensus 11 ~~~~~~~~~~~~~ii~~~~-~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ff 89 (196) ....++...++++|++|++ +..++.|++|||+|++|+++.++||+|+||++++|+.||++ ||+.||++++++|+|| T Consensus 9 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~y~~~~~ly~~~~~~fW~~eEi~~s~D~~dw~~---L~~~Er~~~~~~la~l 85 (149) T 2rcc_A 9 KIYDTTASNASTGILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAFKKIIGLL 85 (149) T ss_dssp CSCCTTSCSSCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGGG---SCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHH T ss_conf 5678999877687506897661005455778999999999877999533151520899986---9999999999999987 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCC Q ss_conf 776367777778888765286899999999999999999999999998237636--899999509 Q 537021.9.peg.7 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV 152 (196) Q Consensus 90 s~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~ 152 (196) +.+|++|++++. .+++.++.||+++++++|++||+||+++|++|+++++.|++ ++|+++.++ T Consensus 86 ~~~D~~v~~~~~-~~~~~~~~~e~~~~~~~q~~~E~iH~~~Ys~i~~~l~~~~e~~~~f~~~~~d 149 (149) T 2rcc_A 86 AFLDSVQTDYSX-RAAEYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHD 149 (149) T ss_dssp HHTTTTCCCHHH-HHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTC T ss_pred HCCCCHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 215204556678-9998755799999999999999989999999999834670367899998710 No 6 >>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:1-128) Probab=100.00 E-value=6.3e-32 Score=229.85 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=117.3 Q ss_pred CCC-CCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 277-6682200876278999999999850498334673461685204014898999999999999977636777777888 Q 537021.9.peg.7 25 LNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 (196) Q Consensus 25 i~~-~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~ 103 (196) |+| ++++.+++|++|||+|++|++++++||+|+||+|++|+.||++ |++.||++++++|+||+.+|++|++++... T Consensus 1 i~~~~~~~~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~d~~~---L~~~er~~~~~~l~~~~~~d~~v~~~~~~~ 77 (128) T 1r2f_A 1 MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNIAGAPS 77 (128) T ss_dssp -----CCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHH T ss_conf 98564555548778868899999999967999646383754998863---999999999999999999999997464999 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCC Q ss_conf 8765286899999999999999999999999998237636--899999509 Q 537021.9.peg.7 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV 152 (196) Q Consensus 104 i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~ 152 (196) +++.++.||+++++++|+++|+||+++|++|+++++.+++ ++|+++.++ T Consensus 78 ~~~~~~~~e~~~~l~~q~~~E~iH~~~Y~~il~~l~~~~e~~~~f~~~~~n 128 (128) T 1r2f_A 78 LMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEEN 128 (128) T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 977659899999999999999999999999999860136689999986144 No 7 >>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} (A:38-160) Probab=99.98 E-value=2.4e-32 Score=232.57 Aligned_cols=123 Identities=29% Similarity=0.521 Sum_probs=116.3 Q ss_pred CHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 82200876278999999999850498334673461685204014898999999999999977636777777888876528 Q 537021.9.peg.7 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 (196) Q Consensus 30 ~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~ 109 (196) ++.+++|++|||+|++|++++++||+|+||++++|+.||++ ||+.||++++++|+||+.+|++|++++...+.+.++ T Consensus 1 ~r~~~~pi~y~~~~~ly~~~~~~~W~~~ei~~~~D~~d~~~---L~~~e~~~~~~~l~~~~~~d~~v~~~~~~~i~~~~~ 77 (123) T 2o1z_A 1 DRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVK 77 (123) T ss_dssp SCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHHH---SCHHHHHHHHHHHHHHHHC-------CHHHHHHHCC T ss_pred CCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 84133188586999999999866899631766231778986---899999999999999985212664343222355214 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH Q ss_conf 6899999999999999999999999998237636899999509999 Q 537021.9.peg.7 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 (196) Q Consensus 110 ~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i 155 (196) .||+++++++|+++|+||+++|+++++++++|++++++++..+|.| T Consensus 78 ~~E~~~~~~~q~~~E~iH~~~Y~~il~~l~~~~~~~~~~~~~~~~~ 123 (123) T 2o1z_A 78 ITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENI 123 (123) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 6999999999999999899999999986335467789999998623 No 8 >>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:104-227) Probab=99.97 E-value=8.2e-32 Score=229.10 Aligned_cols=123 Identities=28% Similarity=0.534 Sum_probs=116.1 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 22008762789999999998504983346734616852040148989999999999999776367777778888765286 Q 537021.9.peg.7 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 (196) Q Consensus 31 ~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~ 110 (196) ..+++|++||++|++|++++++||+|+||+|++|+.||++ +||+.||++++++|+||+.+|++|++++...+++.++. T Consensus 2 r~n~~p~~y~~~~~ly~~~~~~fW~peei~~s~D~~~w~~--~L~~~er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~ 79 (124) T 1jk0_A 2 RTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQI 79 (124) T ss_dssp CCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHH--TCCHHHHHHHHHHHHHHHTTSSHHHHHHCCCCCTSCCC T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 6478685677999999999976999300064001999866--59999999999999999999999970389999997769 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH Q ss_conf 899999999999999999999999998237636899999509999 Q 537021.9.peg.7 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 (196) Q Consensus 111 pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i 155 (196) ||+++++++|++||+||+++|++|++++++|+++++..+..+|.| T Consensus 80 ~e~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~i 124 (124) T 1jk0_A 80 PEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTI 124 (124) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 999999999999999999999999985557777899999999877 No 9 >>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:33-146) Probab=99.97 E-value=3.3e-31 Score=225.07 Aligned_cols=111 Identities=23% Similarity=0.416 Sum_probs=107.3 Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 20087627899999999985049833467346168520401489899999999999997763677777788887652868 Q 537021.9.peg.7 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 (196) Q Consensus 32 ~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~p 111 (196) .+++|++|||+|++|++++++||+|+||+|++|+.||++ ||+.||++++++||||+.+|++|++|+...+++.++.| T Consensus 3 ~~~~p~~y~~~~~ly~~~~~~~W~~~Ei~~~~D~~d~~~---L~~~er~~~~~~l~~~~~~D~~v~~~l~~~~~~~~~~~ 79 (114) T 1jk0_B 3 FVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNP 79 (114) T ss_dssp CSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTT---SCTTHHHHHHHHHHHHC---------CHHHHHHHSCSH T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 345387787999999999976999301170643898987---99999999999999999999999988899999877859 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 9999999999999999999999999823763689 Q 537021.9.peg.7 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 (196) Q Consensus 112 E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~ei 145 (196) |+++|+++|+++|+||+++|++|++++++|++|+ T Consensus 80 E~~~~~~~q~~~E~iH~~~Ys~i~~~l~~d~~e~ 113 (114) T 1jk0_B 80 EGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNI 113 (114) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 9999999999999999999999999864674578 No 10 >>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:21-138) Probab=99.97 E-value=6.3e-30 Score=216.66 Aligned_cols=115 Identities=18% Similarity=0.302 Sum_probs=109.5 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 87627899999999985049833467346168520401489899999999999997763677777788887652868999 Q 537021.9.peg.7 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 (196) Q Consensus 35 ~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~ 114 (196) .-++||++|++|++++++||+|+||+|++|+.||++ ||+.||++++++|+||+++|++|++++...+++.++.||++ T Consensus 2 n~i~y~~~~~ly~~~~~~~W~~~Ei~~~~D~~~w~~---L~~~e~~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~e~~ 78 (118) T 3dhz_A 2 NVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEE 78 (118) T ss_dssp TSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 888748899999999967999734582765999986---99999999999999999999999853088887765878999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCC Q ss_conf 99999999999999999999998237636--899999509 Q 537021.9.peg.7 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV 152 (196) Q Consensus 115 ~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~ 152 (196) +++++|++||+||+++|++|+++|+++++ ++|+++.++ T Consensus 79 ~~~~~q~~~E~iH~~~Ys~i~~~l~~~~~~~~~~~~~~~n 118 (118) T 3dhz_A 79 AVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEEN 118 (118) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 9999999999999999999999929977799999987318 No 11 >>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:) Probab=99.95 E-value=4.1e-27 Score=198.09 Aligned_cols=138 Identities=23% Similarity=0.334 Sum_probs=125.6 Q ss_pred CHHHCCCCCC-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH Q ss_conf 8220087627-899999999985049833467346168520401489899999999999997763677777788--8876 Q 537021.9.peg.7 30 DVNQLLPLKY-GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYR 106 (196) Q Consensus 30 ~~~~l~PikY-~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~--~i~~ 106 (196) ......|+.| +++|++|++++++||.|+|||+++|+.||++ ||+.||+++++++++|+.+|++|++++.. .+++ T Consensus 16 ~~~~~~~~~~~~~~~~ly~~~~~~~W~p~ei~~s~D~~d~~~---L~~~er~~~~~~l~~~~~~d~~v~~~~~~~~~~~~ 92 (323) T 3ee4_A 16 GSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 92 (323) T ss_dssp GGGSTTCCCTTSHHHHHHHHHHHTCCCGGGSCCTTHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH T ss_pred CHHHCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 045316868120299999999865998142581855999987---99999999999999999999999842899998722 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 52868999999999999999999999999982376368999995099999999999999985301 Q 537021.9.peg.7 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 (196) Q Consensus 107 ~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i~~ 171 (196) .++.||+++|+++|+++|+||+++|++++++++.+++ ++..+...|.++.|.++..++...... T Consensus 93 ~~~~~E~~~~l~~q~~~E~~H~~~y~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (323) T 3ee4_A 93 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-LHRYLDDLPAYRQIFYAELPECLNALS 156 (323) T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC-CGGGGTTCHHHHHHHHTHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHC T ss_conf 1475999999999999998899999999988331777-888750248999999999999998744 No 12 >>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A (A:) Probab=99.69 E-value=6.4e-18 Score=137.53 Aligned_cols=128 Identities=10% Similarity=0.005 Sum_probs=109.0 Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHH-------HHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 6766783202242776682200876278999999999-------850498334673461685204014898999999999 Q 537021.9.peg.7 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-------CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 (196) Q Consensus 13 ~~~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~-------~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~i 85 (196) .+.++...+.++.+.........+.+|.+.|+.|+.. .++||+|+|+++..|..+|.. ||++||++++++ T Consensus 12 ~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~pee~~~~~d~~~~~~---l~~~er~~~~~~ 88 (336) T 3chh_A 12 WAARGWVEEEGIGSATLGRLVRAWPRRAAVVNKADILDEWADYDTLVPDYPLEIVPFAEHPLFLA---AEPHQRQRVLTG 88 (336) T ss_dssp ------------CCHHHHHHHHHHHHHCHHHHCTTGGGGGTTCCTTSCSSCGGGCTTTTCHHHHT---SCHHHHHHHHHH T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHCCCCCCHHHHH---CCHHHHHHHHHH T ss_conf 87504411022108999999987875234515760100343058666779976587666977773---799999999999 Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 999977636777777888---------8765286899999999999999999999999998237636 Q 537021.9.peg.7 86 LGFFASSESLVANNIVLA---------IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 (196) Q Consensus 86 L~ffs~~D~~v~~nl~~~---------i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~ 143 (196) +++++.+|++++++.... +.+.++.||++.+++.|+++|++|+++|+.++++++.+.. T Consensus 89 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~eE~~H~~~~~~~~~~~~~~~~ 155 (336) T 3chh_A 89 MWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRK 155 (336) T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999998799999999999999987133688998899999999999999999999999999998507 No 13 >>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:1-248) Probab=96.77 E-value=0.014 Score=36.32 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=83.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 99999999985049833467346168520401489899999999999997763677777788887652868999999999 Q 537021.9.peg.7 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 (196) Q Consensus 41 ~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q 120 (196) ..+..|-++.+.-|..-+-.+-.-+...+....|++..+..++..++.+.-.+--...+. ..+.+..+.++++.++++| T Consensus 48 ~~~~~Y~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~w~~~l~~~l~~~~~~E~ga~~~~-a~~~~~~~~~~~~~~~~~q 126 (248) T 1mty_D 48 LIAKEYARMEAVKDERQFGSLQVALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQ 126 (248) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHH T ss_conf 346887666543234456668889873550002798999999998623157999999999-9999757868899999997 Q ss_pred HHHHHHHHHHHHHHHHHHCCC---H---HHHHHHHHCCHH Q ss_conf 999999999999999982376---3---689999950999 Q 537021.9.peg.7 121 AFEEAVHSHTFQYIITSLGLD---E---GELFNMYREVPS 154 (196) Q Consensus 121 ~~~E~iHs~sYs~il~tl~~d---~---~eif~~~~~~p~ 154 (196) ++-|..|++.+.+....+..+ . +.-...+.++|. T Consensus 127 ~~DelRh~Q~~~~~~~~l~~~~~~~~~~~~~k~~w~~~p~ 166 (248) T 1mty_D 127 VLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPL 166 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCTTTTTHHHHGGGSSH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH T ss_conf 5579999999999999998548886225677897200515 No 14 >>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A (A:1-349,A:476-500) Probab=95.17 E-value=0.24 Score=28.25 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=69.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHH Q ss_conf 489899999999999997763677777788887652868999999999999999999999999982376368----9999 Q 537021.9.peg.7 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNM 148 (196) Q Consensus 73 ~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e----if~~ 148 (196) .|++.-|..+++.|+.++-++-..+.+.. .+.+..+.++++.++++|++-|.-|++...++...|+.+..+ --.. T Consensus 84 ~l~~~~r~~L~~~l~~~~~~E~~~~~~~a-~~~~~ap~~~~~~a~~~~a~Delrhaq~~~~~~~~L~~~~~~~~~~~k~~ 162 (374) T 3ge3_A 84 NSDPGWISTLKSHYGAIAVGEYAAVTGEG-RMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAY 162 (374) T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGGHHHHGG T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 39999999999998403289999999999-99986798889999999999999999999999999723365655677876 Q ss_pred HHCCHHHHH Q ss_conf 950999999 Q 537021.9.peg.7 149 YREVPSITA 157 (196) Q Consensus 149 ~~~~p~i~~ 157 (196) +.++|.... T Consensus 163 w~~d~~~q~ 171 (374) T 3ge3_A 163 HSNEWAAIA 171 (374) T ss_dssp GSCCHHHHH T ss_pred HCCCCHHHH T ss_conf 424800689 No 15 >>1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} (A:) Probab=93.11 E-value=0.45 Score=26.45 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=53.2 Q ss_pred HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH Q ss_conf 50498334673461685204014898999999999999977636777777888876528-68999999999999999999 Q 537021.9.peg.7 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSH 129 (196) Q Consensus 51 ~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~-~pE~~~~~~~q~~~E~iHs~ 129 (196) .++|..+.++...+- .+|+++. ...|..+...+.....+.. .+..... .|++..++..++.+|+.|++ T Consensus 44 ~~~~~~~~~dw~~~~------~~L~~~~----~~~l~~~~l~E~~lp~y~~-~l~~~~~~d~~~~~~~~~W~aEE~rHa~ 112 (275) T 1za0_A 44 ENFAFLGGRDWDPSQ------STLPRTI----TDACEILLILKDNLAGHHR-ELVEHFILEDWWGRWLGRWTAEEHLHAI 112 (275) T ss_dssp CCCGGGTSCCCCGGG------CCSCHHH----HHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHH------CCCCHHH----HHHHHHEEEECCCCCHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 880004655488644------5486666----7675402220467737889-9999806640999998425588745899 Q ss_pred HHHHHHHHHCC Q ss_conf 99999998237 Q 537021.9.peg.7 130 TFQYIITSLGL 140 (196) Q Consensus 130 sYs~il~tl~~ 140 (196) +..-.+..-|. T Consensus 113 aL~~yl~~~g~ 123 (275) T 1za0_A 113 ALREYLVVTRE 123 (275) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHHCC T ss_conf 99999999557 No 16 >>2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A (A:84-180,A:340-347,A:443-482) Probab=90.49 E-value=1.2 Score=23.60 Aligned_cols=63 Identities=19% Similarity=0.082 Sum_probs=53.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 9999999999977636777777888876528689999999999999999999999999823763 Q 537021.9.peg.7 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196) Q Consensus 79 r~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196) ...+|-.+++.+.+|-...+... .+.+.++.||.|..+.+|+.-|..|++.=.|.+.-+.++. T Consensus 6 v~alKlfl~~it~~EY~A~~g~a-~l~R~~~g~g~Rn~~~mQ~lDEiRH~Q~Q~h~~s~ynK~~ 68 (145) T 2inp_A 6 VNALKLFISGISPLEHAAFQGYS-KVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHF 68 (145) T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999997131589999999999-9986468879999999998898878999999998751136 No 17 >>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419) Probab=90.17 E-value=0.13 Score=30.07 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=69.9 Q ss_pred HHHHHHCCCCCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHH Q ss_conf 9998504983346-73461685204014898999999999999977636777777---8888765286899999999999 Q 537021.9.peg.7 47 LSACNNHWMPTEV-PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSNPECRQYLLRQAF 122 (196) Q Consensus 47 k~~~~~fW~peEI-~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl---~~~i~~~i~~pE~~~~~~~q~~ 122 (196) |..+++-=+-.|= +.-+.+.+|-. .-+.+....++++.+ .|+.++++.--+. ...+.+.=.-|-.........- T Consensus 90 ~~~~~~~~~~~~~~p~I~kK~e~i~-~~~~e~~~~l~~~LV-a~~~lEGI~FysgFa~i~~L~krgkM~Gl~~~I~lI~R 167 (295) T 1jk0_A 90 KEMEKEEPLLNEDKPEIGEKAEWAL-RWIQDADALFGERLV-AFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR 167 (295) T ss_dssp HHHGGGCGGGSCCTHHHHHHHHHHH-HHTTSSSCCHHHHHH-HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 7652178655789899998879998-652156899999989-87713401101217999999966962427999999998 Q ss_pred HHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999999823763--68999995099999999999999985301133447933489999999 Q 537021.9.peg.7 123 EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 (196) Q Consensus 123 ~E~iHs~sYs~il~tl~~d~--~eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~l~~l 189 (196) -|.+|.....+++..+.... .++.+. +..-.+-..+|++.+..-....-+.+.-.++++-. T Consensus 168 DE~lH~~f~~~L~~~l~~e~~~e~v~el------~~eAvelE~ef~~~~l~~~~lGi~~e~i~qYIkY~ 230 (295) T 1jk0_A 168 DEGLHTDFACLLFAHLKNKPDPAIVEKI------VTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFV 230 (295) T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHH------HHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHH------HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 9999999999999986403218899999------99999999999998537885799999999999999 No 18 >>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A (A:139-229) Probab=89.23 E-value=1.5 Score=22.96 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=41.0 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 77777788887652868999999999999999999999999982376 Q 537021.9.peg.7 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 (196) Q Consensus 95 ~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d 141 (196) ..++-....++.....|.++-++++-...|.+|...|.-.|+.+.-. T Consensus 18 ~~aR~~y~rL~~mtdDp~vkd~L~FL~~Re~~H~~~f~~Ale~l~~~ 64 (91) T 2v8t_A 18 VAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGV 64 (91) T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999862894289999999998899999999999997586 No 19 >>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (A:81-196) Probab=86.12 E-value=2.3 Score=21.76 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=56.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 898999999999999977636777777888876528689999999999999999999999999823763 Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196) Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196) .-+.=...+|-.++..+.+|-...+.-. .+.+.++.||.|..+++|+.-|..|++.=.++--.+.... T Consensus 4 ~dpr~~~~lKl~l~~i~~~EY~A~~g~a-~~~r~~~~~~~R~~~~~q~lDEiRH~q~q~~l~h~~~~~~ 71 (116) T 2inc_A 4 ADPGWVSTMQLHFGAIALEEYAASTAEA-RMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRS 71 (116) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGC T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 8989999999997434689999999899-9998567888899999999999989999999988752588 No 20 >>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} (A:1-90) Probab=76.35 E-value=5.1 Score=19.49 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 9999999977636777777888876528689999999999999999999999999823763 Q 537021.9.peg.7 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196) Q Consensus 82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196) ...+|.+-...+ ..+.++...+...+++|+++..+...+.+|.-|......+.+.+..++ T Consensus 21 ~~e~l~~Ai~~E-~~a~~fY~~~A~~~~~~~~k~~f~~LA~eE~~H~~~l~~ly~~l~~~e 80 (90) T 2fzf_A 21 LEELLGMAIKAE-IGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGK 80 (90) T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTC T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999989-999999999997779877999999999999999999999998718996 No 21 >>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} (A:) Probab=73.66 E-value=6 Score=19.05 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=54.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 8989999999999999776367777778888765286899999999999999999999999998237636899999 Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 (196) Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~ 149 (196) +++..+.+- .+. ++...-+.+-|+.......+++|+++.++...+-+|-.|...+..+|..+-+...+.+..+ T Consensus 13 ~~~e~~d~~--~lr-~~i~~EleAI~~Y~q~a~~~~d~~~k~vl~~i~~EEk~H~~~~l~lLrr~dp~~~~~l~~~ 85 (95) T 1zpy_A 13 LSDETRDXH--RAI-ISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAXLLEWIRRCDPAFDKELKDY 85 (95) T ss_dssp SCHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH T ss_pred CCHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH T ss_conf 298789999--999-9999999999999999986799999999999998999999999999998798999999998 No 22 >>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} (A:) Probab=64.91 E-value=1.6 Score=22.92 Aligned_cols=67 Identities=22% Similarity=0.181 Sum_probs=51.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 99999999776367777778888765286899999999999999999999999998237636899999 Q 537021.9.peg.7 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 (196) Q Consensus 82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~ 149 (196) +..+|..-..++ ..+.+....+.+.+++|+++-.+...+-+|..|...+.-++..++.+..+.+.++ T Consensus 20 ~~e~L~~Ai~~E-~~a~~fY~~~A~~a~d~~ikklF~~lA~eE~~H~~~f~~ll~~l~~~~~~~~~~~ 86 (345) T 2e0z_A 20 LMEILRLAIIAE-LDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGG 86 (345) T ss_dssp -------------------------------------------------------------------- T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH T ss_conf 999999999999-9999999999984587989999999878899879999999998698999999989 No 23 >>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A (A:156-321) Probab=61.36 E-value=11 Score=17.44 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=38.3 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHH Q ss_conf 887652868999999999999999999999999982-37636899999 Q 537021.9.peg.7 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMY 149 (196) Q Consensus 103 ~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl-~~d~~eif~~~ 149 (196) .+......|-+..+++..+.-|+.|...|+.+++.+ ..||++...++ T Consensus 28 rla~~~gdpvl~~i~~~IA~DE~RH~~fY~~~v~~~le~dPd~~v~A~ 75 (166) T 2uw1_A 28 KLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAF 75 (166) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 998772998999999998778999999999999999843817789999 No 24 >>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345) Probab=61.08 E-value=11 Score=17.41 Aligned_cols=126 Identities=8% Similarity=-0.000 Sum_probs=76.3 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 498334673461685204014898999999999999977636777777888---87652868999999999999999999 Q 537021.9.peg.7 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA---IYRHLSNPECRQYLLRQAFEEAVHSH 129 (196) Q Consensus 53 fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~---i~~~i~~pE~~~~~~~q~~~E~iHs~ 129 (196) |....+++.-+.+.+|-. +.-++.+..+.+.|.+++.++++.--+--.. +.+.=.-|-.........--|.+|.. T Consensus 2 f~~~~~~~~l~~k~~~~~--~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~ 79 (199) T 1jk0_B 2 FKEIANLPEVKHKAAFIE--RWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTD 79 (199) T ss_dssp GGGGCSCHHHHHHHHHHH--HTTSSSSCCHHHHHHHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999985299998888877--403552689999999987322201034208888998659951079999998747999999 Q ss_pred HHHHHHHHHCCCH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 9999999823763--68999995099999999999999985301133447933489999 Q 537021.9.peg.7 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 (196) Q Consensus 130 sYs~il~tl~~d~--~eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~l 186 (196) ...+++..+...+ .++.+.+.+ -.+-..+|++.+........+.+.-.+++ T Consensus 80 ~~~~l~~~l~~e~~~~~i~~l~~e------ave~E~~~~~~~~~~~~~g~~~~~~~~yi 132 (199) T 1jk0_B 80 FSCLLFAHLRTKPNPKIIEKIITE------AVEIEKEYYSNSLPVEKFGMDLKSIHTYI 132 (199) T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHH------HHHHHHHHHTTSCC-----------CTHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 999999986122117799999999------99999999985445453375899999999 No 25 >>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} (C:1-72,C:113-153) Probab=47.63 E-value=14 Score=16.61 Aligned_cols=27 Identities=15% Similarity=-0.059 Sum_probs=20.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 489899999999999997763677777 Q 537021.9.peg.7 73 GLTDDERLMIKRNLGFFASSESLVANN 99 (196) Q Consensus 73 ~Lt~~Er~~~~~iL~ffs~~D~~v~~n 99 (196) .||++||..|..+|.=...++..-..- T Consensus 16 ~LTeeEre~Il~VL~Rde~Lr~~EeeR 42 (113) T 2zet_C 16 TLTDEEAEHVWAVVQRDFDLRRREEER 42 (113) T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 299999999999999789999877655 No 26 >>1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526; structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:) Probab=46.91 E-value=18 Score=15.93 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=38.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999997763677777788887652868999999999999999999999999982376 Q 537021.9.peg.7 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 (196) Q Consensus 82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d 141 (196) +..+|......+..... ....+.. .-.|+++..+...+.+|.-|.+....++..++.+ T Consensus 15 ~~~~L~~a~~~E~~a~~-~Y~~~a~-~~~~~~~~~f~~la~eE~~H~~~l~~~~~~l~~~ 72 (157) T 1vjx_A 15 VSDILTVAIRLEEEGER-FYRELSE-HFNGEIKKTFLELADQERIHAEIFRKXSDQENWD 72 (157) T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHTT-SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999999-9999997-6799999999999999999999999999862798 No 27 >>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:1-150) Probab=44.32 E-value=13 Score=16.82 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=43.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 898999999999999977636777777888876528689999999999999999999999999823 Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 (196) Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~ 139 (196) ||++|+..++....-....-.-.+..+...+. -..||++.+.......-.-|+......++.++ T Consensus 2 Lt~~q~~~i~~sW~~i~~~~~~~g~~~f~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~i 65 (150) T 1cqx_A 2 LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMF--EAHPELKNVFNMAHQEQGQQQQALARAVYAYA 65 (150) T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH--HHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 69799999999999998719999999999998--86946586588864333499999999999999 No 28 >>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (B:) Probab=43.49 E-value=20 Score=15.59 Aligned_cols=85 Identities=12% Similarity=-0.010 Sum_probs=64.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH--HH-H Q ss_conf 14898999999999999977636777777888876528689999999999999999999999999823---763--68-9 Q 537021.9.peg.7 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---LDE--GE-L 145 (196) Q Consensus 72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~---~d~--~e-i 145 (196) ..|++.=+.+++..|+.+...+-..+.+.. .+.+....++++.++.+|++-|..|++.-+++.-.|. .++ .. - T Consensus 104 ~~l~~~w~~~l~~~l~~~~~~Eyga~~~~a-~~~r~~~~~~~~n~~~fqa~DelR~aQ~~~~~~~~l~~~~~~~~~~~~~ 182 (322) T 2inc_B 104 QMLTREWVETLARFYTPARYLFHALQMGSV-YIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRE 182 (322) T ss_dssp GGSCHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSH T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 008999999999987305189999988689-9986567599999999999889899999999999997328996511689 Q ss_pred HHHHHCCHHHHH Q ss_conf 999950999999 Q 537021.9.peg.7 146 FNMYREVPSITA 157 (196) Q Consensus 146 f~~~~~~p~i~~ 157 (196) -..+.++|.-+- T Consensus 183 k~~w~~dp~wq~ 194 (322) T 2inc_B 183 RDVWENDPAWQG 194 (322) T ss_dssp HHHHHHCHHHHH T ss_pred HHHHHHCCHHHH T ss_conf 999970950588 No 29 >>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* (B:109-327) Probab=42.30 E-value=21 Score=15.47 Aligned_cols=83 Identities=7% Similarity=0.005 Sum_probs=61.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH---HHHHH Q ss_conf 898999999999999977636777777888876528689999999999999999999999999823---763---68999 Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---LDE---GELFN 147 (196) Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~---~d~---~eif~ 147 (196) |++.=+.+++..++.+.-.+--.+.+.. .+.+..+.++++..+.+|++-|-.|++.-+|...-|. .+. +.--. T Consensus 2 l~~~w~~~l~~~l~~~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~fqa~D~lr~aQ~~~~~~~~l~~~~~~~~~~~~~k~ 80 (219) T 3ge3_B 2 VREGWEHTMARCYSPLRYLFHCLQMSSA-YVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERE 80 (219) T ss_dssp SCTTHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH T ss_conf 9999999999997507789999998889-999856858999999999877888999999999999985899653078999 Q ss_pred HHHCCHHHHH Q ss_conf 9950999999 Q 537021.9.peg.7 148 MYREVPSITA 157 (196) Q Consensus 148 ~~~~~p~i~~ 157 (196) .+.++|.-+- T Consensus 81 ~w~~dp~wq~ 90 (219) T 3ge3_B 81 LWEKEPGWQG 90 (219) T ss_dssp HHHHCHHHHH T ss_pred HHHCCCHHHH T ss_conf 8822847788 No 30 >>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii OT3} (A:) Probab=37.75 E-value=25 Score=15.01 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=57.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC Q ss_conf 14898999999999999977636777777888876528689999999999999999999999999823763689999950 Q 537021.9.peg.7 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 (196) Q Consensus 72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~ 151 (196) ++|+.+.-..+..--..+... -.+.+ ..+...++.++.+..+......|.-|.+.+...+..+|.++++ .....- T Consensus 32 G~l~~e~~~~yl~qd~~y~~~---~~~~l-a~~~~~~~~~~~~~~l~~~~~~~~~h~~~~~~~~~~~gi~~~~-~~~~~~ 106 (226) T 1udd_A 32 GTLPLEKFKFYVLQDFNYLVG---LTRAL-AVISSKAEYPLMAELIELARDEVTVEVENYVKLLKELDLTLED-AIKTEP 106 (226) T ss_dssp TCSCHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHSCTTHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCHHH-HHHSCC T ss_pred CCCCHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHCCCC T ss_conf 999999999999999999999---99999-9998716719999999999999999999999899985999677-530375 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q 537021.9.peg.7 152 VPSITAKANWALQYT 166 (196) Q Consensus 152 ~p~i~~K~~~~~k~~ 166 (196) .|.-..-.++..... T Consensus 107 ~p~t~ay~~~~~~~a 121 (226) T 1udd_A 107 TLVNSAYMDFMLATA 121 (226) T ss_dssp CHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH T ss_conf 435678999999987 No 31 >>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} (A:) Probab=37.31 E-value=25 Score=14.97 Aligned_cols=64 Identities=11% Similarity=-0.017 Sum_probs=42.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 899999999999997763677777788887652868999999999999999999999999982376 Q 537021.9.peg.7 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 (196) Q Consensus 76 ~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d 141 (196) ...+.-+..+|..+..++..... ...... ....++++..+...+-+|-.|.+...-.+..++-. T Consensus 16 ~~~~~~~~~~L~~al~~E~~a~~-~Y~~~a-~~~~~~~~~~~~~~a~~E~~H~~~l~~~l~~~~~~ 79 (170) T 2ib0_A 16 PSEGSADNAALCDALAVEHATIY-GYGIVS-ALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVT 79 (170) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99885499999999999999999-999998-23988899999999999999999999999985699 No 32 >>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} (A:) Probab=35.76 E-value=16 Score=16.25 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=45.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8989999999999999776367777778888765286899999999999999999999999998237 Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (196) Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~ 140 (196) ||+.|+..++....-...--.-.+..+...+. -..|+++.+..++...-.-|+......++.++. T Consensus 2 Lt~~q~~~i~~sw~~v~~~~~~~g~~~~~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~v~ 66 (146) T 2vhb_A 2 LDQQTINIIKATVPVLKEHGVTITTTFYKNLF--AKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQ 66 (146) T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH--HHCGGGGGGC--------CCCCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 59899999999899998758999999999998--729799976562567778889999999999997 No 33 >>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} (A:) Probab=34.95 E-value=27 Score=14.73 Aligned_cols=90 Identities=8% Similarity=0.002 Sum_probs=60.2 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 61685204014898999999999999977636777777888876528689999999999999999999999999823763 Q 537021.9.peg.7 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196) Q Consensus 63 ~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196) .|+........||+.++..+..........-.-+++.+. ...+..||.+.++......+-.+...=.+++..+..+. T Consensus 32 ~~l~~~~~~~~lt~~d~~~l~~~~~~v~~~~~~~~~~fY---~~l~~~Pe~~~~F~~~~~~~~~k~~~~~~~~~l~~~~~ 108 (178) T 1or4_A 32 ADVKKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFY---KNLDHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVI 108 (178) T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTSHHHHHHHHHHCCHHHHHHHHHHHHHHTTSSCE T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 559999998299999999999989999998999999999---99855989999877934889999999999999873764 Q ss_pred HH-HHHHHHCCHHH Q ss_conf 68-99999509999 Q 537021.9.peg.7 143 GE-LFNMYREVPSI 155 (196) Q Consensus 143 ~e-if~~~~~~p~i 155 (196) ++ ..+....+-.. T Consensus 109 ~~~~~~~~~~iG~~ 122 (178) T 1or4_A 109 DDEFIEKRNRIASI 122 (178) T ss_dssp EHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 47999999999999 No 34 >>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni} (A:) Probab=34.90 E-value=27 Score=14.72 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=45.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8989999999999999776367777778888765286899999999999999999999999998237 Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (196) Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~ 140 (196) ||+.|+..++....-...--.-.+..+...+. -..|+.+.+.......-.-|+......++.++. T Consensus 1 Ls~~q~~~i~~sW~~i~~~~~~~g~~~f~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~i~ 65 (140) T 2wy4_A 1 MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMF--NDYPEVKPMFNMEKQISGEQPKALAMAILMAAK 65 (140) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCGGGGGGSCHHHHHTSHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999899998668999999999999--889778966886567658999999999999998 No 35 >>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} (A:) Probab=34.89 E-value=24 Score=15.02 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=41.5 Q ss_pred CCCHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC Q ss_conf 48989999999999999776-36-7777778888765286899999999999---99999999999999823 Q 537021.9.peg.7 73 GLTDDERLMIKRNLGFFASS-ES-LVANNIVLAIYRHLSNPECRQYLLRQAF---EEAVHSHTFQYIITSLG 139 (196) Q Consensus 73 ~Lt~~Er~~~~~iL~ffs~~-D~-~v~~nl~~~i~~~i~~pE~~~~~~~q~~---~E~iHs~sYs~il~tl~ 139 (196) .||+.|+..++....-.... +. ..+..+...+. -..|+++.+...... .=..|+......++.++ T Consensus 1 ~Lt~~q~~~i~~sW~~v~~~~~~~~~g~~~~~~Lf--~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~i 70 (147) T 1jf3_A 1 GLSAAQRQVVASTWKDIAGADNGAGVGKECLSKFI--SAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAV 70 (147) T ss_dssp CCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH--HHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 93999999999999998746778899999999999--98977897676557799899999999999999999 No 36 >>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (B:31-384) Probab=34.36 E-value=28 Score=14.67 Aligned_cols=66 Identities=20% Similarity=0.063 Sum_probs=55.0 Q ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 14898999-99999999997763677777788887652868999999999999999999999999982 Q 537021.9.peg.7 72 NGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 (196) Q Consensus 72 ~~Lt~~Er-~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl 138 (196) ..|++.=+ .+++..++.+.-++-....+.. .+.+....++++.++.+|++-|..|++--+++..-| T Consensus 99 ~~l~~~w~~~~l~~~l~~~~~~E~~a~~~~a-~~~r~~~~~~i~n~~~~~a~D~lR~aQ~~~~~~~~l 165 (354) T 1mty_B 99 RAMNPTWRDEFINRYWGAFLFNEYGLFNAHS-QGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFL 165 (354) T ss_dssp GGSCHHHHHTTTTTHHHHHHHHHHHHHHTTH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 1199999999999986015289999998789-998756858999999998777888999999999999 No 37 >>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_A 2jkt_A (A:400-471) Probab=33.14 E-value=25 Score=14.96 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=15.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9899999999999997763677777788887652 Q 537021.9.peg.7 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 (196) Q Consensus 75 t~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i 108 (196) +++.+++++..+..|..+-..|...++..+.+.+ T Consensus 37 ap~~~W~idt~l~ll~~aG~~v~~ev~~~~i~li 70 (72) T 2vgl_A 37 AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIV 70 (72) T ss_dssp CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 8818999999999987233347999999999999 No 38 >>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} (A:) Probab=31.65 E-value=31 Score=14.38 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=57.4 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 61685204014898999999999999977636777777888876528689999999999999999999999999823763 Q 537021.9.peg.7 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 (196) Q Consensus 63 ~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~ 142 (196) ....||. |+.-|+.|.+|=+--..++....+|+. .+... .|+-+-=+.+-+-||+.|...|.-+=.+|+..+ T Consensus 21 ~~lpDf~-----s~~YkdAYSRINaIVIEGEqeA~~Nyi-~la~l--lP~~~dEL~rLakME~rH~kgF~aCGrNL~V~~ 92 (244) T 2oc5_A 21 EALPDFT-----SDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTL--LPDHVEELKRLAKXEXRHKKGFTACGKNLGVEA 92 (244) T ss_dssp CCCCCTT-----SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--CGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCC T ss_pred CCCCCCC-----HHHHHHHHHHHHEEEEECHHHHHHHHH-HHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 5788745-----088899998740256745077888699-99987--830199999999999988768888623786887 No 39 >>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:1-148) Probab=28.03 E-value=24 Score=15.09 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=41.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8989999999999999776367777778888765286899999999999999999999999998237 Q 537021.9.peg.7 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (196) Q Consensus 74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~ 140 (196) ||+.|+..++....-....-.-.+..+...+. -..|+++.+.......-.-|+......++.++. T Consensus 2 Lt~~q~~~i~~sW~~v~~~~~~~g~~~~~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~i~ 66 (148) T 1gvh_A 2 LDAQTIATVKATIPLLVETGPKLTAHFYDRMF--THNPELKEIFNMSNQRNGDQREALFNAIAAYAS 66 (148) T ss_dssp CCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH--HHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCCCHHCCHHHHHHHHHHHHHHH T ss_conf 79799999999999998658999999999998--769487764571002114489999999999997 No 40 >>2qzc_A Transcriptional activator TENA-1; NP_343586.1, putative TENA-like thiaminase II, structural genomics; 1.50A {Sulfolobus solfataricus P2} (A:) Probab=27.93 E-value=35 Score=13.97 Aligned_cols=99 Identities=9% Similarity=-0.079 Sum_probs=61.1 Q ss_pred CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46734616852040148989999999999999776367777778888765286899999999999999999999999998 Q 537021.9.peg.7 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 (196) Q Consensus 58 EI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~t 137 (196) .-++-..+ .+ ++|+.+.-..+..--..|... -.+.+ ..+...++.++.+..+..-...|.-|.+.+...++. T Consensus 24 ~hPF~~~l---~~-G~L~~~~f~~yl~Qdy~yv~~---~~r~l-a~~~a~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 95 (214) T 2qzc_A 24 KHEFILKX---RD-GSLPLDIFRYYLIQDGKYVED---XLRAL-LIASSKGPIDKVTKILNLVFSSRDKGLETHGKLYSK 95 (214) T ss_dssp TCHHHHHH---HT-SCSCHHHHHHHHHHHHHHHHH---HHHHH-HHHHTTSCHHHHHHHHHHHTCC--CHHHHHHHHHHH T ss_pred CCHHHHHH---HC-CCCCHHHHHHHHHHHHHHHHH---HHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999997---72-999999999999999999999---99999-998737996999999999999999899999999998 Q ss_pred HCCCHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 2376368999995099999999999999 Q 537021.9.peg.7 138 LGLDEGELFNMYREVPSITAKANWALQY 165 (196) Q Consensus 138 l~~d~~eif~~~~~~p~i~~K~~~~~k~ 165 (196) +|.+.++ .....-.|....-.+|.... T Consensus 96 ~gi~~e~-~~~~~~~p~t~ay~~~l~~~ 122 (214) T 2qzc_A 96 LDISRDV-IVKTGYNLINYAYTRHLYYY 122 (214) T ss_dssp TTCCHHH-HHHSCCCHHHHHHHHHHHHH T ss_pred CCCCHHH-HHHCCCCHHHHHHHHHHHHH T ss_conf 4989888-74023228999999999998 No 41 >>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, structural genomics; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum ms-1} (A:) Probab=25.49 E-value=39 Score=13.69 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=22.1 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 888765286899999999999999999999999998237 Q 537021.9.peg.7 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (196) Q Consensus 102 ~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~ 140 (196) ..+...+..|+++.++...+..|.-|...+..+++.+.. T Consensus 113 ~~~a~~~~D~~~~~~l~~i~~~E~~H~~~l~~~l~~~~~ 151 (167) T 2oh3_A 113 KEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPR 151 (167) T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999988689889999999999999999999999987578 No 42 >>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens} (A:) Probab=25.17 E-value=40 Score=13.65 Aligned_cols=78 Identities=9% Similarity=0.175 Sum_probs=52.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHH Q ss_conf 14898999999999999977636777777888876528689999999999999999999999999823763-68999995 Q 537021.9.peg.7 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYR 150 (196) Q Consensus 72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~-~eif~~~~ 150 (196) ..||+.++..+......+...-...++.+.. ..+..|+.+.++......+-.+...=.++...+..+. .+...... T Consensus 11 ~~ls~~d~~~l~~~~~~i~~~~~~~~~~fy~---~l~~~P~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 87 (162) T 2w31_A 11 YRFTDEDAELLGSLFPLAETNKERLADQFYD---YLLGIPETAEFLKEDLVLQKLKQTHQDWFVSLFAGSYDNRYIHNLQ 87 (162) T ss_dssp HTCCHHHHHHHHHTHHHHHHTHHHHHHHHHH---HHHTSHHHHGGGSTHHHHCCHHHHHHHHHHHTTSSCCSHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 1999999999999899999879999999999---9865988998768817899999999999998762688799999999 Q ss_pred CC Q ss_conf 09 Q 537021.9.peg.7 151 EV 152 (196) Q Consensus 151 ~~ 152 (196) .. T Consensus 88 ~l 89 (162) T 2w31_A 88 KI 89 (162) T ss_dssp HH T ss_pred HH T ss_conf 99 No 43 >>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A* (A:1-37,A:124-138,A:329-437) Probab=23.21 E-value=28 Score=14.61 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=8.4 Q ss_pred HHHHHHHHHCCCCCCCCHHHHH Q ss_conf 9999998504983346734616 Q 537021.9.peg.7 44 EKYLSACNNHWMPTEVPMQDDL 65 (196) Q Consensus 44 ~~yk~~~~~fW~peEI~l~~D~ 65 (196) +.|.+...+=|.+.|-+...|+ T Consensus 105 ~KY~~l~~sGW~vTeeeIeRDv 126 (161) T 2qee_A 105 DKYDDILQAGWEVTEEEIKRDV 126 (161) T ss_dssp HHHHHHHHTTCCCCHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHH T ss_conf 9999998669998599999999 No 44 >>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} (A:89-201) Probab=22.35 E-value=44 Score=13.34 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=27.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCH Q ss_conf 14898999999999999977636-----77777788887652868 Q 537021.9.peg.7 72 NGLTDDERLMIKRNLGFFASSES-----LVANNIVLAIYRHLSNP 111 (196) Q Consensus 72 ~~Lt~~Er~~~~~iL~ffs~~D~-----~v~~nl~~~i~~~i~~p 111 (196) ..|++.-+..++.+++++...-. +-..|++..+++.+-.| T Consensus 30 ~~LP~~n~~~L~~l~~~l~~v~~~s~nkM~~~nLa~vf~P~llr~ 74 (113) T 2ovj_A 30 GELPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKVFGPTIVAH 74 (113) T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHTCC T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC T ss_conf 979899999999999999998756665687889999971385678 No 45 >>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* (A:) Probab=21.67 E-value=46 Score=13.21 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=47.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCC Q ss_conf 148989999999999999776367777778888765286899999999999---------9999999999999982376 Q 537021.9.peg.7 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF---------EEAVHSHTFQYIITSLGLD 141 (196) Q Consensus 72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~---------~E~iHs~sYs~il~tl~~d 141 (196) ..||+.||..++....-....-.-.+..+...+. -..|+++.+...+.. .-.-|+......++.++.. T Consensus 8 ~~Ls~~q~~~i~~sW~~v~~~~~~~g~~~~~~lf--~~~P~~~~~F~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ 84 (162) T 2oif_A 8 VVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIF--EIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQ 84 (162) T ss_dssp -CCCC-CHHHHHHHHHHHGGGHHHHHHHHHHHHH--HHCGGGGGGCHHHHTCCSCGGGCHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 8989999999999999998458899999999999--9898999987654787244311877999999999999999997 No 46 >>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} (B:39-395) Probab=20.10 E-value=50 Score=12.99 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=62.5 Q ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CH--H Q ss_conf 14898999-9999999999776367777778888765286899999999999999999999999998237-----63--6 Q 537021.9.peg.7 72 NGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-----DE--G 143 (196) Q Consensus 72 ~~Lt~~Er-~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~-----d~--~ 143 (196) ..|++.-+ .+++..++-+...+-..+.+.. .+.+....++++.++.+|++-|..|++.-+++...|.. +. + T Consensus 99 ~~l~~~w~~~~l~~~~~~~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~~~a~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~ 177 (357) T 1mhy_B 99 RTIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTD 177 (357) T ss_dssp GGSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 0089999999999986204289999998889-998746748999999998777878999999999998874789870458 Q ss_pred HHHHHHHCCHHHH Q ss_conf 8999995099999 Q 537021.9.peg.7 144 ELFNMYREVPSIT 156 (196) Q Consensus 144 eif~~~~~~p~i~ 156 (196) .-=..+.++|.-+ T Consensus 178 ~~k~~W~~dp~wq 190 (357) T 1mhy_B 178 VPKKIWTTDPIYS 190 (357) T ss_dssp HHHHHHHHCGGGH T ss_pred HHHHHHHCCHHHH T ss_conf 9998983288789 Done!