Query         537021.9.peg.74_1
Match_columns 196
No_of_seqs    127 out of 733
Neff          6.2 
Searched_HMMs 33803
Date          Mon May 23 07:59:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_74.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1h0o_A Ribonucleoside-diphosp 100.0 3.9E-41 1.4E-45  290.6  17.9  153   13-168    62-217 (218)
  2 >1mxr_A Ribonucleotide reducta 100.0   1E-37 3.1E-42  268.0  19.5  180   12-194     5-202 (375)
  3 >1syy_A Ribonucleoside-diphosp 100.0 2.7E-36   8E-41  258.6  20.3  182   11-193     7-189 (346)
  4 >2p1i_A Ribonucleotide reducta 100.0 1.6E-34 4.7E-39  247.0   8.2  140   13-155    22-161 (161)
  5 >2rcc_A Ribonucleoside-diphosp 100.0 3.3E-33 9.9E-38  238.3  13.4  138   11-152     9-149 (149)
  6 >1r2f_A Protein (ribonucleotid 100.0 6.3E-32 1.9E-36  229.9  15.3  125   25-152     1-128 (128)
  7 >2o1z_A Ribonucleotide reducta 100.0 2.4E-32 7.2E-37  232.6  11.8  123   30-155     1-123 (123)
  8 >1jk0_A RNR Y2, ribonucleoside 100.0 8.2E-32 2.4E-36  229.1   9.3  123   31-155     2-124 (124)
  9 >1jk0_B RNR Y4, ribonucleoside 100.0 3.3E-31 9.9E-36  225.1   9.7  111   32-145     3-113 (114)
 10 >3dhz_A Ribonucleotide reducta 100.0 6.3E-30 1.9E-34  216.7  15.1  115   35-152     2-118 (118)
 11 >3ee4_A Probable ribonucleosid 100.0 4.1E-27 1.2E-31  198.1  15.0  138   30-171    16-156 (323)
 12 >3chh_A P-aminobenzoate N-oxyg  99.7 6.4E-18 1.9E-22  137.5   2.3  128   13-143    12-155 (336)
 13 >1mty_D Methane monooxygenase   96.8   0.014 4.3E-07   36.3   9.0  113   41-154    48-166 (248)
 14 >3ge3_A Toluene-4-monooxygenas  95.2    0.24 7.1E-06   28.3   9.5   84   73-157    84-171 (374)
 15 >1za0_A Possible acyl-[acyl-ca  93.1    0.45 1.3E-05   26.4   7.0   79   51-140    44-123 (275)
 16 >2inp_A Phenol hydroxylase com  90.5     1.2 3.6E-05   23.6   8.6   63   79-142     6-68  (145)
 17 >1jk0_A RNR Y2, ribonucleoside  90.2    0.13 3.8E-06   30.1   1.6  135   47-189    90-230 (295)
 18 >2v8t_A Manganese-containing p  89.2     1.5 4.5E-05   23.0   6.8   47   95-141    18-64  (91)
 19 >2inc_A Toluene, O-xylene mono  86.1     2.3 6.9E-05   21.8   9.8   68   74-142     4-71  (116)
 20 >2fzf_A Hypothetical protein;   76.3     5.1 0.00015   19.5   7.2   60   82-142    21-80  (90)
 21 >1zpy_A Hypothetical protein N  73.7       6 0.00018   19.1   9.9   73   74-149    13-85  (95)
 22 >2e0z_A Virus-like particle; b  64.9     1.6 4.6E-05   22.9   0.0   67   82-149    20-86  (345)
 23 >2uw1_A Desaturase, plastid de  61.4      11 0.00031   17.4   8.6   47  103-149    28-75  (166)
 24 >1jk0_B RNR Y4, ribonucleoside  61.1      11 0.00031   17.4   7.5  126   53-186     2-132 (199)
 25 >2zet_C Melanophilin; complex,  47.6      14 0.00042   16.6   2.5   27   73-99     16-42  (113)
 26 >1vjx_A Putative ferritin-like  46.9      18 0.00053   15.9   8.6   58   82-141    15-72  (157)
 27 >1cqx_A Flavohemoprotein; glob  44.3      13 0.00039   16.8   1.9   64   74-139     2-65  (150)
 28 >2inc_B Toluene, O-xylene mono  43.5      20 0.00059   15.6   7.8   85   72-157   104-194 (322)
 29 >3ge3_B Toluene-4-monooxygenas  42.3      21 0.00062   15.5   6.7   83   74-157     2-90  (219)
 30 >1udd_A Transcriptional regula  37.7      25 0.00073   15.0  11.5   90   72-166    32-121 (226)
 31 >2ib0_A Conserved hypothetical  37.3      25 0.00074   15.0   8.7   64   76-141    16-79  (170)
 32 >2vhb_A Hemoglobin; heme, resp  35.8      16 0.00047   16.2   1.3   65   74-140     2-66  (146)
 33 >1or4_A Heme-based aerotactic   35.0      27  0.0008   14.7   9.3   90   63-155    32-122 (178)
 34 >2wy4_A Single domain haemoglo  34.9      27  0.0008   14.7   4.7   65   74-140     1-65  (140)
 35 >1jf3_A Monomer hemoglobin com  34.9      24 0.00072   15.0   2.1   65   73-139     1-70  (147)
 36 >1mty_B Methane monooxygenase   34.4      28 0.00082   14.7   7.1   66   72-138    99-165 (354)
 37 >2vgl_A Adaptor protein comple  33.1      25 0.00074   15.0   1.9   34   75-108    37-70  (72)
 38 >2oc5_A Hypothetical protein;   31.6      31 0.00091   14.4   8.5   72   63-142    21-92  (244)
 39 >1gvh_A Flavohemoprotein; oxid  28.0      24 0.00071   15.1   1.1   65   74-140     2-66  (148)
 40 >2qzc_A Transcriptional activa  27.9      35   0.001   14.0   9.4   99   58-165    24-122 (214)
 41 >2oh3_A Rubrerythrin, COG1633:  25.5      39  0.0012   13.7   8.8   39  102-140   113-151 (167)
 42 >2w31_A Globin; oxygen transpo  25.2      40  0.0012   13.6   5.5   78   72-152    11-89  (162)
 43 >2qee_A BH0493 protein; amidoh  23.2      28 0.00084   14.6   0.8   22   44-65    105-126 (161)
 44 >2ovj_A Mgcracgap, RAC GTPase-  22.3      44  0.0013   13.3   1.6   40   72-111    30-74  (113)
 45 >2oif_A Horvu GLB1, non-legume  21.7      46  0.0014   13.2   4.6   68   72-141     8-84  (162)
 46 >1mhy_B Methane monooxygenase   20.1      50  0.0015   13.0   9.6   84   72-156    99-190 (357)

No 1  
>>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:1-218)
Probab=100.00  E-value=3.9e-41  Score=290.57  Aligned_cols=153  Identities=29%  Similarity=0.526  Sum_probs=146.9

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67667832022427766822008762789999999998504983346734616852040148989999999999999776
Q 537021.9.peg.7   13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS   92 (196)
Q Consensus        13 ~~~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~   92 (196)
                      ...+.+.++++|++++++.++++|++|||+|++|++++++||+|+||+|++|+.||++   ||+.||++++++|+||+++
T Consensus        62 ~~~~~~~~~e~il~~~~~~~~~~piky~~~~~lykk~~~~fW~peEi~ls~D~~dw~~---Lt~~Er~~i~~~la~fa~~  138 (218)
T 1h0o_A           62 APTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAAS  138 (218)
T ss_dssp             ---CCSCTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHH---SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHH
T ss_conf             2467876667664688775233387777999999999874898330681754999986---9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             3677777788887652868999999999999999999999999982376368---999995099999999999999985
Q 537021.9.peg.7   93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT  168 (196)
Q Consensus        93 D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e---if~~~~~~p~i~~K~~~~~k~~~~  168 (196)
                      |++|++|+...|++.++.||+++||++|++||+||+++|++|+++|+.|++|   +|+++.++|+|++|++|+.+|+++
T Consensus       139 D~iv~~nl~~~~~~~i~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~d~~e~~~if~~~~~~p~i~~K~~~~~~~~~~  217 (218)
T 1h0o_A          139 DGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGD  217 (218)
T ss_dssp             HHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999854899887547979999999999999999999999999985013778887778988768899998988863044


No 2  
>>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} (A:)
Probab=100.00  E-value=1e-37  Score=267.99  Aligned_cols=180  Identities=17%  Similarity=0.216  Sum_probs=165.3

Q ss_pred             CCCCCCCCCCCCCCCCC-CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             06766783202242776-68220087627899999999985049833467346168520401489899999999999997
Q 537021.9.peg.7   12 AGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA   90 (196)
Q Consensus        12 ~~~~~~~~~~~~ii~~~-~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs   90 (196)
                      .+..+...++++|++|+ ++..++.|++|||+|++|++++++||+|+||++++|+.||++   ||+.||++++++|++|+
T Consensus         5 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~y~~~~~ly~~~~~~~W~p~ei~~s~D~~d~~~---L~~~er~~~~~~l~~l~   81 (375)
T 1mxr_A            5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT   81 (375)
T ss_dssp             SCCSCCCTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHT---SCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_conf             679996310156415898773337865567999999999867899502272431899977---99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             76367777778888765286899999999999999999999999998237636899999509999999999999998530
Q 537021.9.peg.7   91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS  170 (196)
Q Consensus        91 ~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i~  170 (196)
                      .+|++|++++...+++.++.||+++++++|+++|+||+++|++++++++.+++|+|++++++|.|++|++|+.++++...
T Consensus        82 ~~D~~v~~~~~~~l~~~~~~~e~~~~l~~q~~~E~iH~~~Ys~i~~~l~~~~~e~~~~~~~~~~l~~k~~~i~~~y~~~~  161 (375)
T 1mxr_A           82 LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELI  161 (375)
T ss_dssp             HHHHHHHHHHHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHCHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             99999976629988423797799999999999999899999999998736828899999606988999999999866776


Q ss_pred             CC-----------------CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             11-----------------3344793348999999999963
Q 537021.9.peg.7  171 SP-----------------SFHYWNKRRRSRILTRSLRFLC  194 (196)
Q Consensus       171 ~~-----------------~~~~~~~e~~~~~l~~li~f~~  194 (196)
                      +.                 .....+.+.++.++..||+++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~  202 (375)
T 1mxr_A          162 EMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNA  202 (375)
T ss_dssp             HHHHHHHHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             66789986166754334543332304789999999999999


No 3  
>>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:)
Probab=100.00  E-value=2.7e-36  Score=258.63  Aligned_cols=182  Identities=52%  Similarity=0.944  Sum_probs=168.6

Q ss_pred             HCCCCCCCCCCCCCCCCCC-CHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             3067667832022427766-822008762789999999998504983346734616852040148989999999999999
Q 537021.9.peg.7   11 QAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF   89 (196)
Q Consensus        11 ~~~~~~~~~~~~~ii~~~~-~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ff   89 (196)
                      -....+.+.++++|++|++ +.++++|++|||+|++|+++.++||+|+||++++|+.||++ .+||+.||+++.++|++|
T Consensus         7 ~~~~~~~~~~~~~i~~~~~~~~~~~~p~~y~~~~~ly~~~~~~~W~peei~~~~D~~d~~~-~~L~~~er~~~~~~l~~~   85 (346)
T 1syy_A            7 DGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILLNLGFF   85 (346)
T ss_dssp             GGGGGSCCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCEEECCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH-CCCCHHHHHHHHHHHHHH
T ss_conf             1544556612141258998865451898777999999999976999400276134988854-899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             77636777777888876528689999999999999999999999999823763689999950999999999999999853
Q 537021.9.peg.7   90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL  169 (196)
Q Consensus        90 s~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i  169 (196)
                      +.+|++|++++...+++.++.||+++|+++|+++|++|+++|++++++++.+++++|+++.++|++++|++|+.++++..
T Consensus        86 ~~~d~~v~~~l~~~l~~~~~~~e~~~~~~~q~~~E~~H~~~Y~~il~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  165 (346)
T 1syy_A           86 STAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKV  165 (346)
T ss_dssp             HHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHHTTSGG
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999998888998872178599999999999998889999999999846678999999830899999999999866410


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             011334479334899999999996
Q 537021.9.peg.7  170 SSPSFHYWNKRRRSRILTRSLRFL  193 (196)
Q Consensus       170 ~~~~~~~~~~e~~~~~l~~li~f~  193 (196)
                      .+......+.+..+.++..+++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~  189 (346)
T 1syy_A          166 LDPNFRTDSVEGLQEFVKNLVGYY  189 (346)
T ss_dssp             GSTTCCSSSHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             033312144455899999999999


No 4  
>>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:1-161)
Probab=100.00  E-value=1.6e-34  Score=246.95  Aligned_cols=140  Identities=26%  Similarity=0.461  Sum_probs=131.2

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             67667832022427766822008762789999999998504983346734616852040148989999999999999776
Q 537021.9.peg.7   13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS   92 (196)
Q Consensus        13 ~~~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~   92 (196)
                      ++.+.+.+++.++++++++.+++|++|||+|++|++++++||+|+||++++|+.||++   ||+.||++++++|+||+.+
T Consensus        22 ~~~~~~~~~~~~l~~~~~~~~~~pi~y~~~~~ly~~~~~~fW~peEi~~~~D~~d~~~---L~~~e~~~~~~~l~~l~~~   98 (161)
T 2p1i_A           22 DFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---LNVNEKHFIKHVLAFFAAS   98 (161)
T ss_dssp             -------------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHH---SCTTTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---CCHHHHHHHHHHHHHHHHH
T ss_conf             0656641489655799996234288486999999999976899622475000788986---9999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
Q ss_conf             367777778888765286899999999999999999999999998237636899999509999
Q 537021.9.peg.7   93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI  155 (196)
Q Consensus        93 D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i  155 (196)
                      |++|++++...+.+.++.||+++++++|+++|+||+++|+++++++++|++++++.|..+|.|
T Consensus        99 D~~v~~~i~~~~~~~~~~~e~~~~~~~q~~~E~iH~~~Ys~il~~l~~d~~~~~~~~~~~~~i  161 (161)
T 2p1i_A           99 DGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENI  161 (161)
T ss_dssp             -----CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSC
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             879987665321101134589999999999998889999999986325526678899988304


No 5  
>>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:1-149)
Probab=100.00  E-value=3.3e-33  Score=238.27  Aligned_cols=138  Identities=21%  Similarity=0.411  Sum_probs=128.8

Q ss_pred             HCCCCCCCCCCCCCCCCCC-CHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             3067667832022427766-822008762789999999998504983346734616852040148989999999999999
Q 537021.9.peg.7   11 QAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF   89 (196)
Q Consensus        11 ~~~~~~~~~~~~~ii~~~~-~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ff   89 (196)
                      ....++...++++|++|++ +..++.|++|||+|++|+++.++||+|+||++++|+.||++   ||+.||++++++|+||
T Consensus         9 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~y~~~~~ly~~~~~~fW~~eEi~~s~D~~dw~~---L~~~Er~~~~~~la~l   85 (149)
T 2rcc_A            9 KIYDTTASNASTGILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAFKKIIGLL   85 (149)
T ss_dssp             CSCCTTSCSSCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGGG---SCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHH
T ss_conf             5678999877687506897661005455778999999999877999533151520899986---9999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCC
Q ss_conf             776367777778888765286899999999999999999999999998237636--899999509
Q 537021.9.peg.7   90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV  152 (196)
Q Consensus        90 s~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~  152 (196)
                      +.+|++|++++. .+++.++.||+++++++|++||+||+++|++|+++++.|++  ++|+++.++
T Consensus        86 ~~~D~~v~~~~~-~~~~~~~~~e~~~~~~~q~~~E~iH~~~Ys~i~~~l~~~~e~~~~f~~~~~d  149 (149)
T 2rcc_A           86 AFLDSVQTDYSX-RAAEYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHD  149 (149)
T ss_dssp             HHTTTTCCCHHH-HHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTC
T ss_pred             HCCCCHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             215204556678-9998755799999999999999989999999999834670367899998710


No 6  
>>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:1-128)
Probab=100.00  E-value=6.3e-32  Score=229.85  Aligned_cols=125  Identities=18%  Similarity=0.304  Sum_probs=117.3

Q ss_pred             CCC-CCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             277-6682200876278999999999850498334673461685204014898999999999999977636777777888
Q 537021.9.peg.7   25 LNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA  103 (196)
Q Consensus        25 i~~-~~~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~  103 (196)
                      |+| ++++.+++|++|||+|++|++++++||+|+||+|++|+.||++   |++.||++++++|+||+.+|++|++++...
T Consensus         1 i~~~~~~~~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~d~~~---L~~~er~~~~~~l~~~~~~d~~v~~~~~~~   77 (128)
T 1r2f_A            1 MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNIAGAPS   77 (128)
T ss_dssp             -----CCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             98564555548778868899999999967999646383754998863---999999999999999999999997464999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCC
Q ss_conf             8765286899999999999999999999999998237636--899999509
Q 537021.9.peg.7  104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV  152 (196)
Q Consensus       104 i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~  152 (196)
                      +++.++.||+++++++|+++|+||+++|++|+++++.+++  ++|+++.++
T Consensus        78 ~~~~~~~~e~~~~l~~q~~~E~iH~~~Y~~il~~l~~~~e~~~~f~~~~~n  128 (128)
T 1r2f_A           78 LMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEEN  128 (128)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             977659899999999999999999999999999860136689999986144


No 7  
>>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} (A:38-160)
Probab=99.98  E-value=2.4e-32  Score=232.57  Aligned_cols=123  Identities=29%  Similarity=0.521  Sum_probs=116.3

Q ss_pred             CHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             82200876278999999999850498334673461685204014898999999999999977636777777888876528
Q 537021.9.peg.7   30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS  109 (196)
Q Consensus        30 ~~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~  109 (196)
                      ++.+++|++|||+|++|++++++||+|+||++++|+.||++   ||+.||++++++|+||+.+|++|++++...+.+.++
T Consensus         1 ~r~~~~pi~y~~~~~ly~~~~~~~W~~~ei~~~~D~~d~~~---L~~~e~~~~~~~l~~~~~~d~~v~~~~~~~i~~~~~   77 (123)
T 2o1z_A            1 DRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVK   77 (123)
T ss_dssp             SCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHHH---SCHHHHHHHHHHHHHHHHC-------CHHHHHHHCC
T ss_pred             CCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             84133188586999999999866899631766231778986---899999999999999985212664343222355214


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
Q ss_conf             6899999999999999999999999998237636899999509999
Q 537021.9.peg.7  110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI  155 (196)
Q Consensus       110 ~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i  155 (196)
                      .||+++++++|+++|+||+++|+++++++++|++++++++..+|.|
T Consensus        78 ~~E~~~~~~~q~~~E~iH~~~Y~~il~~l~~~~~~~~~~~~~~~~~  123 (123)
T 2o1z_A           78 ITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENI  123 (123)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             6999999999999999899999999986335467789999998623


No 8  
>>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:104-227)
Probab=99.97  E-value=8.2e-32  Score=229.10  Aligned_cols=123  Identities=28%  Similarity=0.534  Sum_probs=116.1

Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22008762789999999998504983346734616852040148989999999999999776367777778888765286
Q 537021.9.peg.7   31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN  110 (196)
Q Consensus        31 ~~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~  110 (196)
                      ..+++|++||++|++|++++++||+|+||+|++|+.||++  +||+.||++++++|+||+.+|++|++++...+++.++.
T Consensus         2 r~n~~p~~y~~~~~ly~~~~~~fW~peei~~s~D~~~w~~--~L~~~er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~   79 (124)
T 1jk0_A            2 RTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQI   79 (124)
T ss_dssp             CCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHH--TCCHHHHHHHHHHHHHHHTTSSHHHHHHCCCCCTSCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             6478685677999999999976999300064001999866--59999999999999999999999970389999997769


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
Q ss_conf             899999999999999999999999998237636899999509999
Q 537021.9.peg.7  111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI  155 (196)
Q Consensus       111 pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i  155 (196)
                      ||+++++++|++||+||+++|++|++++++|+++++..+..+|.|
T Consensus        80 ~e~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~i  124 (124)
T 1jk0_A           80 PEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTI  124 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999985557777899999999877


No 9  
>>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:33-146)
Probab=99.97  E-value=3.3e-31  Score=225.07  Aligned_cols=111  Identities=23%  Similarity=0.416  Sum_probs=107.3

Q ss_pred             HHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             20087627899999999985049833467346168520401489899999999999997763677777788887652868
Q 537021.9.peg.7   32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP  111 (196)
Q Consensus        32 ~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~p  111 (196)
                      .+++|++|||+|++|++++++||+|+||+|++|+.||++   ||+.||++++++||||+.+|++|++|+...+++.++.|
T Consensus         3 ~~~~p~~y~~~~~ly~~~~~~~W~~~Ei~~~~D~~d~~~---L~~~er~~~~~~l~~~~~~D~~v~~~l~~~~~~~~~~~   79 (114)
T 1jk0_B            3 FVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNP   79 (114)
T ss_dssp             CSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTT---SCTTHHHHHHHHHHHHC---------CHHHHHHHSCSH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             345387787999999999976999301170643898987---99999999999999999999999988899999877859


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             9999999999999999999999999823763689
Q 537021.9.peg.7  112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL  145 (196)
Q Consensus       112 E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~ei  145 (196)
                      |+++|+++|+++|+||+++|++|++++++|++|+
T Consensus        80 E~~~~~~~q~~~E~iH~~~Ys~i~~~l~~d~~e~  113 (114)
T 1jk0_B           80 EGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNI  113 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9999999999999999999999999864674578


No 10 
>>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:21-138)
Probab=99.97  E-value=6.3e-30  Score=216.66  Aligned_cols=115  Identities=18%  Similarity=0.302  Sum_probs=109.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             87627899999999985049833467346168520401489899999999999997763677777788887652868999
Q 537021.9.peg.7   35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR  114 (196)
Q Consensus        35 ~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~  114 (196)
                      .-++||++|++|++++++||+|+||+|++|+.||++   ||+.||++++++|+||+++|++|++++...+++.++.||++
T Consensus         2 n~i~y~~~~~ly~~~~~~~W~~~Ei~~~~D~~~w~~---L~~~e~~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~e~~   78 (118)
T 3dhz_A            2 NVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEE   78 (118)
T ss_dssp             TSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             888748899999999967999734582765999986---99999999999999999999999853088887765878999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHCC
Q ss_conf             99999999999999999999998237636--899999509
Q 537021.9.peg.7  115 QYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV  152 (196)
Q Consensus       115 ~~~~~q~~~E~iHs~sYs~il~tl~~d~~--eif~~~~~~  152 (196)
                      +++++|++||+||+++|++|+++|+++++  ++|+++.++
T Consensus        79 ~~~~~q~~~E~iH~~~Ys~i~~~l~~~~~~~~~~~~~~~n  118 (118)
T 3dhz_A           79 AVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEEN  118 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             9999999999999999999999929977799999987318


No 11 
>>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:)
Probab=99.95  E-value=4.1e-27  Score=198.09  Aligned_cols=138  Identities=23%  Similarity=0.334  Sum_probs=125.6

Q ss_pred             CHHHCCCCCC-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_conf             8220087627-899999999985049833467346168520401489899999999999997763677777788--8876
Q 537021.9.peg.7   30 DVNQLLPLKY-GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYR  106 (196)
Q Consensus        30 ~~~~l~PikY-~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~--~i~~  106 (196)
                      ......|+.| +++|++|++++++||.|+|||+++|+.||++   ||+.||+++++++++|+.+|++|++++..  .+++
T Consensus        16 ~~~~~~~~~~~~~~~~ly~~~~~~~W~p~ei~~s~D~~d~~~---L~~~er~~~~~~l~~~~~~d~~v~~~~~~~~~~~~   92 (323)
T 3ee4_A           16 GSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR   92 (323)
T ss_dssp             GGGSTTCCCTTSHHHHHHHHHHHTCCCGGGSCCTTHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CHHHCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             045316868120299999999865998142581855999987---99999999999999999999999842899998722


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             52868999999999999999999999999982376368999995099999999999999985301
Q 537021.9.peg.7  107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS  171 (196)
Q Consensus       107 ~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~~p~i~~K~~~~~k~~~~i~~  171 (196)
                      .++.||+++|+++|+++|+||+++|++++++++.+++ ++..+...|.++.|.++..++......
T Consensus        93 ~~~~~E~~~~l~~q~~~E~~H~~~y~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (323)
T 3ee4_A           93 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-LHRYLDDLPAYRQIFYAELPECLNALS  156 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC-CGGGGTTCHHHHHHHHTHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             1475999999999999998899999999988331777-888750248999999999999998744


No 12 
>>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A (A:)
Probab=99.69  E-value=6.4e-18  Score=137.53  Aligned_cols=128  Identities=10%  Similarity=0.005  Sum_probs=109.0

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHH-------HHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             6766783202242776682200876278999999999-------850498334673461685204014898999999999
Q 537021.9.peg.7   13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-------CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN   85 (196)
Q Consensus        13 ~~~~~~~~~~~ii~~~~~~~~l~PikY~~~~~~yk~~-------~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~i   85 (196)
                      .+.++...+.++.+.........+.+|.+.|+.|+..       .++||+|+|+++..|..+|..   ||++||++++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~pee~~~~~d~~~~~~---l~~~er~~~~~~   88 (336)
T 3chh_A           12 WAARGWVEEEGIGSATLGRLVRAWPRRAAVVNKADILDEWADYDTLVPDYPLEIVPFAEHPLFLA---AEPHQRQRVLTG   88 (336)
T ss_dssp             ------------CCHHHHHHHHHHHHHCHHHHCTTGGGGGTTCCTTSCSSCGGGCTTTTCHHHHT---SCHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHCCCCCCHHHHH---CCHHHHHHHHHH
T ss_conf             87504411022108999999987875234515760100343058666779976587666977773---799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             999977636777777888---------8765286899999999999999999999999998237636
Q 537021.9.peg.7   86 LGFFASSESLVANNIVLA---------IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG  143 (196)
Q Consensus        86 L~ffs~~D~~v~~nl~~~---------i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~  143 (196)
                      +++++.+|++++++....         +.+.++.||++.+++.|+++|++|+++|+.++++++.+..
T Consensus        89 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~eE~~H~~~~~~~~~~~~~~~~  155 (336)
T 3chh_A           89 MWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRK  155 (336)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999998799999999999999987133688998899999999999999999999999999998507


No 13 
>>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:1-248)
Probab=96.77  E-value=0.014  Score=36.32  Aligned_cols=113  Identities=12%  Similarity=0.035  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999999985049833467346168520401489899999999999997763677777788887652868999999999
Q 537021.9.peg.7   41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ  120 (196)
Q Consensus        41 ~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q  120 (196)
                      ..+..|-++.+.-|..-+-.+-.-+...+....|++..+..++..++.+.-.+--...+. ..+.+..+.++++.++++|
T Consensus        48 ~~~~~Y~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~w~~~l~~~l~~~~~~E~ga~~~~-a~~~~~~~~~~~~~~~~~q  126 (248)
T 1mty_D           48 LIAKEYARMEAVKDERQFGSLQVALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQ  126 (248)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHH
T ss_conf             346887666543234456668889873550002798999999998623157999999999-9999757868899999997


Q ss_pred             HHHHHHHHHHHHHHHHHHCCC---H---HHHHHHHHCCHH
Q ss_conf             999999999999999982376---3---689999950999
Q 537021.9.peg.7  121 AFEEAVHSHTFQYIITSLGLD---E---GELFNMYREVPS  154 (196)
Q Consensus       121 ~~~E~iHs~sYs~il~tl~~d---~---~eif~~~~~~p~  154 (196)
                      ++-|..|++.+.+....+..+   .   +.-...+.++|.
T Consensus       127 ~~DelRh~Q~~~~~~~~l~~~~~~~~~~~~~k~~w~~~p~  166 (248)
T 1mty_D          127 VLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPL  166 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCTTTTTHHHHGGGSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
T ss_conf             5579999999999999998548886225677897200515


No 14 
>>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A (A:1-349,A:476-500)
Probab=95.17  E-value=0.24  Score=28.25  Aligned_cols=84  Identities=12%  Similarity=0.011  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHH
Q ss_conf             489899999999999997763677777788887652868999999999999999999999999982376368----9999
Q 537021.9.peg.7   73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNM  148 (196)
Q Consensus        73 ~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e----if~~  148 (196)
                      .|++.-|..+++.|+.++-++-..+.+.. .+.+..+.++++.++++|++-|.-|++...++...|+.+..+    --..
T Consensus        84 ~l~~~~r~~L~~~l~~~~~~E~~~~~~~a-~~~~~ap~~~~~~a~~~~a~Delrhaq~~~~~~~~L~~~~~~~~~~~k~~  162 (374)
T 3ge3_A           84 NSDPGWISTLKSHYGAIAVGEYAAVTGEG-RMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAY  162 (374)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGGHHHHGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             39999999999998403289999999999-99986798889999999999999999999999999723365655677876


Q ss_pred             HHCCHHHHH
Q ss_conf             950999999
Q 537021.9.peg.7  149 YREVPSITA  157 (196)
Q Consensus       149 ~~~~p~i~~  157 (196)
                      +.++|....
T Consensus       163 w~~d~~~q~  171 (374)
T 3ge3_A          163 HSNEWAAIA  171 (374)
T ss_dssp             GSCCHHHHH
T ss_pred             HCCCCHHHH
T ss_conf             424800689


No 15 
>>1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=93.11  E-value=0.45  Score=26.45  Aligned_cols=79  Identities=11%  Similarity=0.037  Sum_probs=53.2

Q ss_pred             HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf             50498334673461685204014898999999999999977636777777888876528-68999999999999999999
Q 537021.9.peg.7   51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSH  129 (196)
Q Consensus        51 ~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~-~pE~~~~~~~q~~~E~iHs~  129 (196)
                      .++|..+.++...+-      .+|+++.    ...|..+...+.....+.. .+..... .|++..++..++.+|+.|++
T Consensus        44 ~~~~~~~~~dw~~~~------~~L~~~~----~~~l~~~~l~E~~lp~y~~-~l~~~~~~d~~~~~~~~~W~aEE~rHa~  112 (275)
T 1za0_A           44 ENFAFLGGRDWDPSQ------STLPRTI----TDACEILLILKDNLAGHHR-ELVEHFILEDWWGRWLGRWTAEEHLHAI  112 (275)
T ss_dssp             CCCGGGTSCCCCGGG------CCSCHHH----HHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHH------CCCCHHH----HHHHHHEEEECCCCCHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             880004655488644------5486666----7675402220467737889-9999806640999998425588745899


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999998237
Q 537021.9.peg.7  130 TFQYIITSLGL  140 (196)
Q Consensus       130 sYs~il~tl~~  140 (196)
                      +..-.+..-|.
T Consensus       113 aL~~yl~~~g~  123 (275)
T 1za0_A          113 ALREYLVVTRE  123 (275)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHCC
T ss_conf             99999999557


No 16 
>>2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A (A:84-180,A:340-347,A:443-482)
Probab=90.49  E-value=1.2  Score=23.60  Aligned_cols=63  Identities=19%  Similarity=0.082  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             9999999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7   79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE  142 (196)
Q Consensus        79 r~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~  142 (196)
                      ...+|-.+++.+.+|-...+... .+.+.++.||.|..+.+|+.-|..|++.=.|.+.-+.++.
T Consensus         6 v~alKlfl~~it~~EY~A~~g~a-~l~R~~~g~g~Rn~~~mQ~lDEiRH~Q~Q~h~~s~ynK~~   68 (145)
T 2inp_A            6 VNALKLFISGISPLEHAAFQGYS-KVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHF   68 (145)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999997131589999999999-9986468879999999998898878999999998751136


No 17 
>>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419)
Probab=90.17  E-value=0.13  Score=30.07  Aligned_cols=135  Identities=13%  Similarity=0.070  Sum_probs=69.9

Q ss_pred             HHHHHHCCCCCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9998504983346-73461685204014898999999999999977636777777---8888765286899999999999
Q 537021.9.peg.7   47 LSACNNHWMPTEV-PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSNPECRQYLLRQAF  122 (196)
Q Consensus        47 k~~~~~fW~peEI-~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl---~~~i~~~i~~pE~~~~~~~q~~  122 (196)
                      |..+++-=+-.|= +.-+.+.+|-. .-+.+....++++.+ .|+.++++.--+.   ...+.+.=.-|-.........-
T Consensus        90 ~~~~~~~~~~~~~~p~I~kK~e~i~-~~~~e~~~~l~~~LV-a~~~lEGI~FysgFa~i~~L~krgkM~Gl~~~I~lI~R  167 (295)
T 1jk0_A           90 KEMEKEEPLLNEDKPEIGEKAEWAL-RWIQDADALFGERLV-AFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICR  167 (295)
T ss_dssp             HHHGGGCGGGSCCTHHHHHHHHHHH-HHTTSSSCCHHHHHH-HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             7652178655789899998879998-652156899999989-87713401101217999999966962427999999998


Q ss_pred             HHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999823763--68999995099999999999999985301133447933489999999
Q 537021.9.peg.7  123 EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS  189 (196)
Q Consensus       123 ~E~iHs~sYs~il~tl~~d~--~eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~l~~l  189 (196)
                      -|.+|.....+++..+....  .++.+.      +..-.+-..+|++.+..-....-+.+.-.++++-.
T Consensus       168 DE~lH~~f~~~L~~~l~~e~~~e~v~el------~~eAvelE~ef~~~~l~~~~lGi~~e~i~qYIkY~  230 (295)
T 1jk0_A          168 DEGLHTDFACLLFAHLKNKPDPAIVEKI------VTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFV  230 (295)
T ss_dssp             HHHHHHHHHHHHHHTCSSCCCHHHHHHH------HHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHH------HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             9999999999999986403218899999------99999999999998537885799999999999999


No 18 
>>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A (A:139-229)
Probab=89.23  E-value=1.5  Score=22.96  Aligned_cols=47  Identities=21%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77777788887652868999999999999999999999999982376
Q 537021.9.peg.7   95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD  141 (196)
Q Consensus        95 ~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d  141 (196)
                      ..++-....++.....|.++-++++-...|.+|...|.-.|+.+.-.
T Consensus        18 ~~aR~~y~rL~~mtdDp~vkd~L~FL~~Re~~H~~~f~~Ale~l~~~   64 (91)
T 2v8t_A           18 VAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGV   64 (91)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999862894289999999998899999999999997586


No 19 
>>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (A:81-196)
Probab=86.12  E-value=2.3  Score=21.76  Aligned_cols=68  Identities=13%  Similarity=0.053  Sum_probs=56.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             898999999999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE  142 (196)
Q Consensus        74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~  142 (196)
                      .-+.=...+|-.++..+.+|-...+.-. .+.+.++.||.|..+++|+.-|..|++.=.++--.+....
T Consensus         4 ~dpr~~~~lKl~l~~i~~~EY~A~~g~a-~~~r~~~~~~~R~~~~~q~lDEiRH~q~q~~l~h~~~~~~   71 (116)
T 2inc_A            4 ADPGWVSTMQLHFGAIALEEYAASTAEA-RMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRS   71 (116)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGC
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8989999999997434689999999899-9998567888899999999999989999999988752588


No 20 
>>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} (A:1-90)
Probab=76.35  E-value=5.1  Score=19.49  Aligned_cols=60  Identities=13%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             9999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7   82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE  142 (196)
Q Consensus        82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~  142 (196)
                      ...+|.+-...+ ..+.++...+...+++|+++..+...+.+|.-|......+.+.+..++
T Consensus        21 ~~e~l~~Ai~~E-~~a~~fY~~~A~~~~~~~~k~~f~~LA~eE~~H~~~l~~ly~~l~~~e   80 (90)
T 2fzf_A           21 LEELLGMAIKAE-IGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGK   80 (90)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999989-999999999997779877999999999999999999999998718996


No 21 
>>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} (A:)
Probab=73.66  E-value=6  Score=19.05  Aligned_cols=73  Identities=18%  Similarity=0.096  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             8989999999999999776367777778888765286899999999999999999999999998237636899999
Q 537021.9.peg.7   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY  149 (196)
Q Consensus        74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~  149 (196)
                      +++..+.+-  .+. ++...-+.+-|+.......+++|+++.++...+-+|-.|...+..+|..+-+...+.+..+
T Consensus        13 ~~~e~~d~~--~lr-~~i~~EleAI~~Y~q~a~~~~d~~~k~vl~~i~~EEk~H~~~~l~lLrr~dp~~~~~l~~~   85 (95)
T 1zpy_A           13 LSDETRDXH--RAI-ISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAXLLEWIRRCDPAFDKELKDY   85 (95)
T ss_dssp             SCHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf             298789999--999-9999999999999999986799999999999998999999999999998798999999998


No 22 
>>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} (A:)
Probab=64.91  E-value=1.6  Score=22.92  Aligned_cols=67  Identities=22%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999999776367777778888765286899999999999999999999999998237636899999
Q 537021.9.peg.7   82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY  149 (196)
Q Consensus        82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~  149 (196)
                      +..+|..-..++ ..+.+....+.+.+++|+++-.+...+-+|..|...+.-++..++.+..+.+.++
T Consensus        20 ~~e~L~~Ai~~E-~~a~~fY~~~A~~a~d~~ikklF~~lA~eE~~H~~~f~~ll~~l~~~~~~~~~~~   86 (345)
T 2e0z_A           20 LMEILRLAIIAE-LDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGG   86 (345)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf             999999999999-9999999999984587989999999878899879999999998698999999989


No 23 
>>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A (A:156-321)
Probab=61.36  E-value=11  Score=17.44  Aligned_cols=47  Identities=15%  Similarity=0.235  Sum_probs=38.3

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHH
Q ss_conf             887652868999999999999999999999999982-37636899999
Q 537021.9.peg.7  103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMY  149 (196)
Q Consensus       103 ~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl-~~d~~eif~~~  149 (196)
                      .+......|-+..+++..+.-|+.|...|+.+++.+ ..||++...++
T Consensus        28 rla~~~gdpvl~~i~~~IA~DE~RH~~fY~~~v~~~le~dPd~~v~A~   75 (166)
T 2uw1_A           28 KLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAF   75 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             998772998999999998778999999999999999843817789999


No 24 
>>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345)
Probab=61.08  E-value=11  Score=17.41  Aligned_cols=126  Identities=8%  Similarity=-0.000  Sum_probs=76.3

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             498334673461685204014898999999999999977636777777888---87652868999999999999999999
Q 537021.9.peg.7   53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA---IYRHLSNPECRQYLLRQAFEEAVHSH  129 (196)
Q Consensus        53 fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~---i~~~i~~pE~~~~~~~q~~~E~iHs~  129 (196)
                      |....+++.-+.+.+|-.  +.-++.+..+.+.|.+++.++++.--+--..   +.+.=.-|-.........--|.+|..
T Consensus         2 f~~~~~~~~l~~k~~~~~--~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~   79 (199)
T 1jk0_B            2 FKEIANLPEVKHKAAFIE--RWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTD   79 (199)
T ss_dssp             GGGGCSCHHHHHHHHHHH--HTTSSSSCCHHHHHHHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999985299998888877--403552689999999987322201034208888998659951079999998747999999


Q ss_pred             HHHHHHHHHCCCH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             9999999823763--68999995099999999999999985301133447933489999
Q 537021.9.peg.7  130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL  186 (196)
Q Consensus       130 sYs~il~tl~~d~--~eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~l  186 (196)
                      ...+++..+...+  .++.+.+.+      -.+-..+|++.+........+.+.-.+++
T Consensus        80 ~~~~l~~~l~~e~~~~~i~~l~~e------ave~E~~~~~~~~~~~~~g~~~~~~~~yi  132 (199)
T 1jk0_B           80 FSCLLFAHLRTKPNPKIIEKIITE------AVEIEKEYYSNSLPVEKFGMDLKSIHTYI  132 (199)
T ss_dssp             HHHHHHHTCSSCCCHHHHHHHHHH------HHHHHHHHHTTSCC-----------CTHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             999999986122117799999999------99999999985445453375899999999


No 25 
>>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} (C:1-72,C:113-153)
Probab=47.63  E-value=14  Score=16.61  Aligned_cols=27  Identities=15%  Similarity=-0.059  Sum_probs=20.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             489899999999999997763677777
Q 537021.9.peg.7   73 GLTDDERLMIKRNLGFFASSESLVANN   99 (196)
Q Consensus        73 ~Lt~~Er~~~~~iL~ffs~~D~~v~~n   99 (196)
                      .||++||..|..+|.=...++..-..-
T Consensus        16 ~LTeeEre~Il~VL~Rde~Lr~~EeeR   42 (113)
T 2zet_C           16 TLTDEEAEHVWAVVQRDFDLRRREEER   42 (113)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             299999999999999789999877655


No 26 
>>1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526; structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:)
Probab=46.91  E-value=18  Score=15.93  Aligned_cols=58  Identities=17%  Similarity=0.122  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999997763677777788887652868999999999999999999999999982376
Q 537021.9.peg.7   82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD  141 (196)
Q Consensus        82 ~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d  141 (196)
                      +..+|......+..... ....+.. .-.|+++..+...+.+|.-|.+....++..++.+
T Consensus        15 ~~~~L~~a~~~E~~a~~-~Y~~~a~-~~~~~~~~~f~~la~eE~~H~~~l~~~~~~l~~~   72 (157)
T 1vjx_A           15 VSDILTVAIRLEEEGER-FYRELSE-HFNGEIKKTFLELADQERIHAEIFRKXSDQENWD   72 (157)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHTT-SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999999-9999997-6799999999999999999999999999862798


No 27 
>>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:1-150)
Probab=44.32  E-value=13  Score=16.82  Aligned_cols=64  Identities=11%  Similarity=0.166  Sum_probs=43.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             898999999999999977636777777888876528689999999999999999999999999823
Q 537021.9.peg.7   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG  139 (196)
Q Consensus        74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~  139 (196)
                      ||++|+..++....-....-.-.+..+...+.  -..||++.+.......-.-|+......++.++
T Consensus         2 Lt~~q~~~i~~sW~~i~~~~~~~g~~~f~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~i   65 (150)
T 1cqx_A            2 LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMF--EAHPELKNVFNMAHQEQGQQQQALARAVYAYA   65 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH--HHCGGGGGTSCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             69799999999999998719999999999998--86946586588864333499999999999999


No 28 
>>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} (B:)
Probab=43.49  E-value=20  Score=15.59  Aligned_cols=85  Identities=12%  Similarity=-0.010  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH--HH-H
Q ss_conf             14898999999999999977636777777888876528689999999999999999999999999823---763--68-9
Q 537021.9.peg.7   72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---LDE--GE-L  145 (196)
Q Consensus        72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~---~d~--~e-i  145 (196)
                      ..|++.=+.+++..|+.+...+-..+.+.. .+.+....++++.++.+|++-|..|++.-+++.-.|.   .++  .. -
T Consensus       104 ~~l~~~w~~~l~~~l~~~~~~Eyga~~~~a-~~~r~~~~~~~~n~~~fqa~DelR~aQ~~~~~~~~l~~~~~~~~~~~~~  182 (322)
T 2inc_B          104 QMLTREWVETLARFYTPARYLFHALQMGSV-YIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRE  182 (322)
T ss_dssp             GGSCHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSH
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             008999999999987305189999988689-9986567599999999999889899999999999997328996511689


Q ss_pred             HHHHHCCHHHHH
Q ss_conf             999950999999
Q 537021.9.peg.7  146 FNMYREVPSITA  157 (196)
Q Consensus       146 f~~~~~~p~i~~  157 (196)
                      -..+.++|.-+-
T Consensus       183 k~~w~~dp~wq~  194 (322)
T 2inc_B          183 RDVWENDPAWQG  194 (322)
T ss_dssp             HHHHHHCHHHHH
T ss_pred             HHHHHHCCHHHH
T ss_conf             999970950588


No 29 
>>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* (B:109-327)
Probab=42.30  E-value=21  Score=15.47  Aligned_cols=83  Identities=7%  Similarity=0.005  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH---HHHHH
Q ss_conf             898999999999999977636777777888876528689999999999999999999999999823---763---68999
Q 537021.9.peg.7   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---LDE---GELFN  147 (196)
Q Consensus        74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~---~d~---~eif~  147 (196)
                      |++.=+.+++..++.+.-.+--.+.+.. .+.+..+.++++..+.+|++-|-.|++.-+|...-|.   .+.   +.--.
T Consensus         2 l~~~w~~~l~~~l~~~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~fqa~D~lr~aQ~~~~~~~~l~~~~~~~~~~~~~k~   80 (219)
T 3ge3_B            2 VREGWEHTMARCYSPLRYLFHCLQMSSA-YVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERE   80 (219)
T ss_dssp             SCTTHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             9999999999997507789999998889-999856858999999999877888999999999999985899653078999


Q ss_pred             HHHCCHHHHH
Q ss_conf             9950999999
Q 537021.9.peg.7  148 MYREVPSITA  157 (196)
Q Consensus       148 ~~~~~p~i~~  157 (196)
                      .+.++|.-+-
T Consensus        81 ~w~~dp~wq~   90 (219)
T 3ge3_B           81 LWEKEPGWQG   90 (219)
T ss_dssp             HHHHCHHHHH
T ss_pred             HHHCCCHHHH
T ss_conf             8822847788


No 30 
>>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii OT3} (A:)
Probab=37.75  E-value=25  Score=15.01  Aligned_cols=90  Identities=10%  Similarity=0.014  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             14898999999999999977636777777888876528689999999999999999999999999823763689999950
Q 537021.9.peg.7   72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE  151 (196)
Q Consensus        72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~eif~~~~~  151 (196)
                      ++|+.+.-..+..--..+...   -.+.+ ..+...++.++.+..+......|.-|.+.+...+..+|.++++ .....-
T Consensus        32 G~l~~e~~~~yl~qd~~y~~~---~~~~l-a~~~~~~~~~~~~~~l~~~~~~~~~h~~~~~~~~~~~gi~~~~-~~~~~~  106 (226)
T 1udd_A           32 GTLPLEKFKFYVLQDFNYLVG---LTRAL-AVISSKAEYPLMAELIELARDEVTVEVENYVKLLKELDLTLED-AIKTEP  106 (226)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHSCTTHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCHHH-HHHSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHCCCC
T ss_conf             999999999999999999999---99999-9998716719999999999999999999999899985999677-530375


Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q 537021.9.peg.7  152 VPSITAKANWALQYT  166 (196)
Q Consensus       152 ~p~i~~K~~~~~k~~  166 (196)
                      .|.-..-.++.....
T Consensus       107 ~p~t~ay~~~~~~~a  121 (226)
T 1udd_A          107 TLVNSAYMDFMLATA  121 (226)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             435678999999987


No 31 
>>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} (A:)
Probab=37.31  E-value=25  Score=14.97  Aligned_cols=64  Identities=11%  Similarity=-0.017  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999999999997763677777788887652868999999999999999999999999982376
Q 537021.9.peg.7   76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD  141 (196)
Q Consensus        76 ~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d  141 (196)
                      ...+.-+..+|..+..++..... ...... ....++++..+...+-+|-.|.+...-.+..++-.
T Consensus        16 ~~~~~~~~~~L~~al~~E~~a~~-~Y~~~a-~~~~~~~~~~~~~~a~~E~~H~~~l~~~l~~~~~~   79 (170)
T 2ib0_A           16 PSEGSADNAALCDALAVEHATIY-GYGIVS-ALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVT   79 (170)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH-HHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99885499999999999999999-999998-23988899999999999999999999999985699


No 32 
>>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} (A:)
Probab=35.76  E-value=16  Score=16.25  Aligned_cols=65  Identities=11%  Similarity=0.165  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8989999999999999776367777778888765286899999999999999999999999998237
Q 537021.9.peg.7   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL  140 (196)
Q Consensus        74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~  140 (196)
                      ||+.|+..++....-...--.-.+..+...+.  -..|+++.+..++...-.-|+......++.++.
T Consensus         2 Lt~~q~~~i~~sw~~v~~~~~~~g~~~~~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~v~   66 (146)
T 2vhb_A            2 LDQQTINIIKATVPVLKEHGVTITTTFYKNLF--AKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQ   66 (146)
T ss_dssp             CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH--HHCGGGGGGC--------CCCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             59899999999899998758999999999998--729799976562567778889999999999997


No 33 
>>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} (A:)
Probab=34.95  E-value=27  Score=14.73  Aligned_cols=90  Identities=8%  Similarity=0.002  Sum_probs=60.2

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             61685204014898999999999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7   63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE  142 (196)
Q Consensus        63 ~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~  142 (196)
                      .|+........||+.++..+..........-.-+++.+.   ...+..||.+.++......+-.+...=.+++..+..+.
T Consensus        32 ~~l~~~~~~~~lt~~d~~~l~~~~~~v~~~~~~~~~~fY---~~l~~~Pe~~~~F~~~~~~~~~k~~~~~~~~~l~~~~~  108 (178)
T 1or4_A           32 ADVKKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFY---KNLDHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVI  108 (178)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTSHHHHHHHHHHCCHHHHHHHHHHHHHHTTSSCE
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             559999998299999999999989999998999999999---99855989999877934889999999999999873764


Q ss_pred             HH-HHHHHHCCHHH
Q ss_conf             68-99999509999
Q 537021.9.peg.7  143 GE-LFNMYREVPSI  155 (196)
Q Consensus       143 ~e-if~~~~~~p~i  155 (196)
                      ++ ..+....+-..
T Consensus       109 ~~~~~~~~~~iG~~  122 (178)
T 1or4_A          109 DDEFIEKRNRIASI  122 (178)
T ss_dssp             EHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             47999999999999


No 34 
>>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni} (A:)
Probab=34.90  E-value=27  Score=14.72  Aligned_cols=65  Identities=11%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8989999999999999776367777778888765286899999999999999999999999998237
Q 537021.9.peg.7   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL  140 (196)
Q Consensus        74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~  140 (196)
                      ||+.|+..++....-...--.-.+..+...+.  -..|+.+.+.......-.-|+......++.++.
T Consensus         1 Ls~~q~~~i~~sW~~i~~~~~~~g~~~f~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~i~   65 (140)
T 2wy4_A            1 MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMF--NDYPEVKPMFNMEKQISGEQPKALAMAILMAAK   65 (140)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCGGGGGGSCHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999899998668999999999999--889778966886567658999999999999998


No 35 
>>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} (A:)
Probab=34.89  E-value=24  Score=15.02  Aligned_cols=65  Identities=14%  Similarity=0.050  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC
Q ss_conf             48989999999999999776-36-7777778888765286899999999999---99999999999999823
Q 537021.9.peg.7   73 GLTDDERLMIKRNLGFFASS-ES-LVANNIVLAIYRHLSNPECRQYLLRQAF---EEAVHSHTFQYIITSLG  139 (196)
Q Consensus        73 ~Lt~~Er~~~~~iL~ffs~~-D~-~v~~nl~~~i~~~i~~pE~~~~~~~q~~---~E~iHs~sYs~il~tl~  139 (196)
                      .||+.|+..++....-.... +. ..+..+...+.  -..|+++.+......   .=..|+......++.++
T Consensus         1 ~Lt~~q~~~i~~sW~~v~~~~~~~~~g~~~~~~Lf--~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~i   70 (147)
T 1jf3_A            1 GLSAAQRQVVASTWKDIAGADNGAGVGKECLSKFI--SAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAV   70 (147)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH--HHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             93999999999999998746778899999999999--98977897676557799899999999999999999


No 36 
>>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (B:31-384)
Probab=34.36  E-value=28  Score=14.67  Aligned_cols=66  Identities=20%  Similarity=0.063  Sum_probs=55.0

Q ss_pred             CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             14898999-99999999997763677777788887652868999999999999999999999999982
Q 537021.9.peg.7   72 NGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL  138 (196)
Q Consensus        72 ~~Lt~~Er-~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl  138 (196)
                      ..|++.=+ .+++..++.+.-++-....+.. .+.+....++++.++.+|++-|..|++--+++..-|
T Consensus        99 ~~l~~~w~~~~l~~~l~~~~~~E~~a~~~~a-~~~r~~~~~~i~n~~~~~a~D~lR~aQ~~~~~~~~l  165 (354)
T 1mty_B           99 RAMNPTWRDEFINRYWGAFLFNEYGLFNAHS-QGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFL  165 (354)
T ss_dssp             GGSCHHHHHTTTTTHHHHHHHHHHHHHHTTH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1199999999999986015289999998789-998756858999999998777888999999999999


No 37 
>>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_A 2jkt_A (A:400-471)
Probab=33.14  E-value=25  Score=14.96  Aligned_cols=34  Identities=9%  Similarity=0.146  Sum_probs=15.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9899999999999997763677777788887652
Q 537021.9.peg.7   75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHL  108 (196)
Q Consensus        75 t~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i  108 (196)
                      +++.+++++..+..|..+-..|...++..+.+.+
T Consensus        37 ap~~~W~idt~l~ll~~aG~~v~~ev~~~~i~li   70 (72)
T 2vgl_A           37 AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIV   70 (72)
T ss_dssp             CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             8818999999999987233347999999999999


No 38 
>>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} (A:)
Probab=31.65  E-value=31  Score=14.38  Aligned_cols=72  Identities=22%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             61685204014898999999999999977636777777888876528689999999999999999999999999823763
Q 537021.9.peg.7   63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE  142 (196)
Q Consensus        63 ~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~  142 (196)
                      ....||.     |+.-|+.|.+|=+--..++....+|+. .+...  .|+-+-=+.+-+-||+.|...|.-+=.+|+..+
T Consensus        21 ~~lpDf~-----s~~YkdAYSRINaIVIEGEqeA~~Nyi-~la~l--lP~~~dEL~rLakME~rH~kgF~aCGrNL~V~~   92 (244)
T 2oc5_A           21 EALPDFT-----SDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTL--LPDHVEELKRLAKXEXRHKKGFTACGKNLGVEA   92 (244)
T ss_dssp             CCCCCTT-----SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--CGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCCCC-----HHHHHHHHHHHHEEEEECHHHHHHHHH-HHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5788745-----088899998740256745077888699-99987--830199999999999988768888623786887


No 39 
>>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:1-148)
Probab=28.03  E-value=24  Score=15.09  Aligned_cols=65  Identities=9%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8989999999999999776367777778888765286899999999999999999999999998237
Q 537021.9.peg.7   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL  140 (196)
Q Consensus        74 Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~  140 (196)
                      ||+.|+..++....-....-.-.+..+...+.  -..|+++.+.......-.-|+......++.++.
T Consensus         2 Lt~~q~~~i~~sW~~v~~~~~~~g~~~~~~lF--~~~P~~~~~F~~~~~~~~~h~~~v~~~l~~~i~   66 (148)
T 1gvh_A            2 LDAQTIATVKATIPLLVETGPKLTAHFYDRMF--THNPELKEIFNMSNQRNGDQREALFNAIAAYAS   66 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH--HHCGGGGGTSCCCTTCCSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHCCCCCHHCCHHHHHHHHHHHHHHH
T ss_conf             79799999999999998658999999999998--769487764571002114489999999999997


No 40 
>>2qzc_A Transcriptional activator TENA-1; NP_343586.1, putative TENA-like thiaminase II, structural genomics; 1.50A {Sulfolobus solfataricus P2} (A:)
Probab=27.93  E-value=35  Score=13.97  Aligned_cols=99  Identities=9%  Similarity=-0.079  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             46734616852040148989999999999999776367777778888765286899999999999999999999999998
Q 537021.9.peg.7   58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS  137 (196)
Q Consensus        58 EI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~t  137 (196)
                      .-++-..+   .+ ++|+.+.-..+..--..|...   -.+.+ ..+...++.++.+..+..-...|.-|.+.+...++.
T Consensus        24 ~hPF~~~l---~~-G~L~~~~f~~yl~Qdy~yv~~---~~r~l-a~~~a~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~   95 (214)
T 2qzc_A           24 KHEFILKX---RD-GSLPLDIFRYYLIQDGKYVED---XLRAL-LIASSKGPIDKVTKILNLVFSSRDKGLETHGKLYSK   95 (214)
T ss_dssp             TCHHHHHH---HT-SCSCHHHHHHHHHHHHHHHHH---HHHHH-HHHHTTSCHHHHHHHHHHHTCC--CHHHHHHHHHHH
T ss_pred             CCHHHHHH---HC-CCCCHHHHHHHHHHHHHHHHH---HHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999997---72-999999999999999999999---99999-998737996999999999999999899999999998


Q ss_pred             HCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             2376368999995099999999999999
Q 537021.9.peg.7  138 LGLDEGELFNMYREVPSITAKANWALQY  165 (196)
Q Consensus       138 l~~d~~eif~~~~~~p~i~~K~~~~~k~  165 (196)
                      +|.+.++ .....-.|....-.+|....
T Consensus        96 ~gi~~e~-~~~~~~~p~t~ay~~~l~~~  122 (214)
T 2qzc_A           96 LDISRDV-IVKTGYNLINYAYTRHLYYY  122 (214)
T ss_dssp             TTCCHHH-HHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHH-HHHCCCCHHHHHHHHHHHHH
T ss_conf             4989888-74023228999999999998


No 41 
>>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, structural genomics; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum ms-1} (A:)
Probab=25.49  E-value=39  Score=13.69  Aligned_cols=39  Identities=21%  Similarity=0.112  Sum_probs=22.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             888765286899999999999999999999999998237
Q 537021.9.peg.7  102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL  140 (196)
Q Consensus       102 ~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~  140 (196)
                      ..+...+..|+++.++...+..|.-|...+..+++.+..
T Consensus       113 ~~~a~~~~D~~~~~~l~~i~~~E~~H~~~l~~~l~~~~~  151 (167)
T 2oh3_A          113 KEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPR  151 (167)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999988689889999999999999999999999987578


No 42 
>>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens} (A:)
Probab=25.17  E-value=40  Score=13.65  Aligned_cols=78  Identities=9%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHH
Q ss_conf             14898999999999999977636777777888876528689999999999999999999999999823763-68999995
Q 537021.9.peg.7   72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYR  150 (196)
Q Consensus        72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~-~eif~~~~  150 (196)
                      ..||+.++..+......+...-...++.+..   ..+..|+.+.++......+-.+...=.++...+..+. .+......
T Consensus        11 ~~ls~~d~~~l~~~~~~i~~~~~~~~~~fy~---~l~~~P~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   87 (162)
T 2w31_A           11 YRFTDEDAELLGSLFPLAETNKERLADQFYD---YLLGIPETAEFLKEDLVLQKLKQTHQDWFVSLFAGSYDNRYIHNLQ   87 (162)
T ss_dssp             HTCCHHHHHHHHHTHHHHHHTHHHHHHHHHH---HHHTSHHHHGGGSTHHHHCCHHHHHHHHHHHTTSSCCSHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             1999999999999899999879999999999---9865988998768817899999999999998762688799999999


Q ss_pred             CC
Q ss_conf             09
Q 537021.9.peg.7  151 EV  152 (196)
Q Consensus       151 ~~  152 (196)
                      ..
T Consensus        88 ~l   89 (162)
T 2w31_A           88 KI   89 (162)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99


No 43 
>>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A* (A:1-37,A:124-138,A:329-437)
Probab=23.21  E-value=28  Score=14.61  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=8.4

Q ss_pred             HHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             9999998504983346734616
Q 537021.9.peg.7   44 EKYLSACNNHWMPTEVPMQDDL   65 (196)
Q Consensus        44 ~~yk~~~~~fW~peEI~l~~D~   65 (196)
                      +.|.+...+=|.+.|-+...|+
T Consensus       105 ~KY~~l~~sGW~vTeeeIeRDv  126 (161)
T 2qee_A          105 DKYDDILQAGWEVTEEEIKRDV  126 (161)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHH
T ss_conf             9999998669998599999999


No 44 
>>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} (A:89-201)
Probab=22.35  E-value=44  Score=13.34  Aligned_cols=40  Identities=8%  Similarity=0.012  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCH
Q ss_conf             14898999999999999977636-----77777788887652868
Q 537021.9.peg.7   72 NGLTDDERLMIKRNLGFFASSES-----LVANNIVLAIYRHLSNP  111 (196)
Q Consensus        72 ~~Lt~~Er~~~~~iL~ffs~~D~-----~v~~nl~~~i~~~i~~p  111 (196)
                      ..|++.-+..++.+++++...-.     +-..|++..+++.+-.|
T Consensus        30 ~~LP~~n~~~L~~l~~~l~~v~~~s~nkM~~~nLa~vf~P~llr~   74 (113)
T 2ovj_A           30 GELPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKVFGPTIVAH   74 (113)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHTCC
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             979899999999999999998756665687889999971385678


No 45 
>>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* (A:)
Probab=21.67  E-value=46  Score=13.21  Aligned_cols=68  Identities=9%  Similarity=0.137  Sum_probs=47.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCC
Q ss_conf             148989999999999999776367777778888765286899999999999---------9999999999999982376
Q 537021.9.peg.7   72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF---------EEAVHSHTFQYIITSLGLD  141 (196)
Q Consensus        72 ~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~---------~E~iHs~sYs~il~tl~~d  141 (196)
                      ..||+.||..++....-....-.-.+..+...+.  -..|+++.+...+..         .-.-|+......++.++..
T Consensus         8 ~~Ls~~q~~~i~~sW~~v~~~~~~~g~~~~~~lf--~~~P~~~~~F~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~   84 (162)
T 2oif_A            8 VVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIF--EIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQ   84 (162)
T ss_dssp             -CCCC-CHHHHHHHHHHHGGGHHHHHHHHHHHHH--HHCGGGGGGCHHHHTCCSCGGGCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             8989999999999999998458899999999999--9898999987654787244311877999999999999999997


No 46 
>>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} (B:39-395)
Probab=20.10  E-value=50  Score=12.99  Aligned_cols=84  Identities=14%  Similarity=0.095  Sum_probs=62.5

Q ss_pred             CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CH--H
Q ss_conf             14898999-9999999999776367777778888765286899999999999999999999999998237-----63--6
Q 537021.9.peg.7   72 NGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-----DE--G  143 (196)
Q Consensus        72 ~~Lt~~Er-~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~-----d~--~  143 (196)
                      ..|++.-+ .+++..++-+...+-..+.+.. .+.+....++++.++.+|++-|..|++.-+++...|..     +.  +
T Consensus        99 ~~l~~~w~~~~l~~~~~~~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~~~a~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~  177 (357)
T 1mhy_B           99 RTIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTD  177 (357)
T ss_dssp             GGSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             0089999999999986204289999998889-998746748999999998777878999999999998874789870458


Q ss_pred             HHHHHHHCCHHHH
Q ss_conf             8999995099999
Q 537021.9.peg.7  144 ELFNMYREVPSIT  156 (196)
Q Consensus       144 eif~~~~~~p~i~  156 (196)
                      .-=..+.++|.-+
T Consensus       178 ~~k~~W~~dp~wq  190 (357)
T 1mhy_B          178 VPKKIWTTDPIYS  190 (357)
T ss_dssp             HHHHHHHHCGGGH
T ss_pred             HHHHHHHCCHHHH
T ss_conf             9998983288789


Done!