BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 537021.9.peg.74_1 (196 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/174 (100%), Positives = 174/174 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 >gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida fusca YX] gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] Length = 354 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 138/173 (79%), Positives = 158/173 (91%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N TGL IQ+G RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV M Sbjct: 4 VNTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSM 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQA Sbjct: 64 QADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQA 123 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 FEEAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YT+ L +P+F Sbjct: 124 FEEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNF 176 >gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris TIE-1] gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris TIE-1] Length = 373 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 138/172 (80%), Positives = 152/172 (88%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ Sbjct: 24 DTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQ 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 84 ADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L P F Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHF 195 >gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 372 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/192 (72%), Positives = 160/192 (83%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A+ GL PIQ G R++ D+KRM+NARSDVNQLLPLKY WAWEKYL CNNHWMPTEV Sbjct: 21 IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ Sbjct: 81 MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200 Query: 181 RRSRILTRSLRF 192 R L + F Sbjct: 201 RDQDFLRDLIAF 212 >gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium sp. BNC1] gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1] Length = 369 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 138/170 (81%), Positives = 154/170 (90%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I+ G RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D Sbjct: 22 TGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 81 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 82 IALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 141 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L P+F Sbjct: 142 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNF 191 >gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] Length = 389 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 138/173 (79%), Positives = 152/173 (87%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ TGL I G RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M Sbjct: 39 ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 99 QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGF 211 >gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter hamburgensis X14] gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14] Length = 416 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 138/172 (80%), Positives = 151/172 (87%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV MQ Sbjct: 67 DATGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSMQ 126 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 127 ADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 186 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EEAVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L P F Sbjct: 187 EEAVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGF 238 >gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter winogradskyi Nb-255] gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255] Length = 391 Score = 296 bits (759), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 138/172 (80%), Positives = 151/172 (87%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + GL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ Sbjct: 42 DAAGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQ 101 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 102 ADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 161 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F Sbjct: 162 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGF 213 >gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 360 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 134/170 (78%), Positives = 152/170 (89%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 +GL I+ +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 13 SGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAMQAD 72 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQAFEE Sbjct: 73 IALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQAFEE 132 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 AVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YTQ L +P F Sbjct: 133 AVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEF 182 >gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola ehrlichii MLHE-1] gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii MLHE-1] Length = 354 Score = 293 bits (751), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 135/172 (78%), Positives = 151/172 (87%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N TGL I+AG RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM Sbjct: 5 NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW+ +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF Sbjct: 65 ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S F Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHF 176 >gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] Length = 377 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/173 (78%), Positives = 150/173 (86%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 27 AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 87 QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDF 199 >gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] Length = 373 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 135/170 (79%), Positives = 150/170 (88%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 26 TGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQAD 85 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 86 IALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 145 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F Sbjct: 146 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDF 195 >gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] Length = 371 Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 136/170 (80%), Positives = 148/170 (87%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D Sbjct: 24 TGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 83 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 LA+W+S++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 84 LAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 143 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 A+H+HTFQYI SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F Sbjct: 144 AIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGF 193 >gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] Length = 374 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 139/188 (73%), Positives = 153/188 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 27 TGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQAD 86 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQAFEE Sbjct: 87 IALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQAFEE 146 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L PSF K Sbjct: 147 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKETDQA 206 Query: 185 ILTRSLRF 192 L + F Sbjct: 207 FLRDLIAF 214 >gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] Length = 357 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 130/173 (75%), Positives = 150/173 (86%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ Sbjct: 8 DATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAMQ 67 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQAF Sbjct: 68 ADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAF 127 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 EEAVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F Sbjct: 128 EEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFE 180 >gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] Length = 357 Score = 287 bits (735), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 130/171 (76%), Positives = 150/171 (87%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV MQ D Sbjct: 10 TGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAMQAD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQAFEE Sbjct: 70 IALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEE 129 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 AVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F Sbjct: 130 AVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFE 180 >gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris BisB18] gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris BisB18] Length = 386 Score = 287 bits (734), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 132/172 (76%), Positives = 150/172 (87%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ Sbjct: 37 DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW S++GLT+DER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 97 ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L P+F Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTF 208 >gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 360 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 128/172 (74%), Positives = 151/172 (87%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 ++GL I RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ Sbjct: 12 SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE Sbjct: 72 DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 EAVH+HTFQYI SLGLDEGELFNMYRE+PSI+ K WAL+YTQ L +P F Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFE 183 >gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] Length = 349 Score = 284 bits (727), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 128/162 (79%), Positives = 146/162 (90%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWKS + Sbjct: 10 GAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWKSPD 69 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+HTFQ Sbjct: 70 GLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQ 129 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 YI SLGLDEGELFN YREVPSI K +WAL+YT+ L P+F Sbjct: 130 YICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNF 171 >gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp. P1] Length = 358 Score = 284 bits (726), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 126/172 (73%), Positives = 149/172 (86%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I G ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV MQ Sbjct: 9 DTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAMQ 68 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+F Sbjct: 69 ADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQSF 128 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EEAVH+HTFQY+ SLGLDEGELFN YR+VPSIT K WAL+YTQ LS P F Sbjct: 129 EEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDF 180 >gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] Length = 358 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/169 (76%), Positives = 148/169 (87%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL I+ G RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+ Sbjct: 12 GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALW+S NGLT DER IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA Sbjct: 72 ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L P F Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEF 180 >gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] Length = 354 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 131/175 (74%), Positives = 148/175 (84%), Gaps = 4/175 (2%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 T PI G RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ Sbjct: 2 TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61 Query: 64 DLALWK----SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 D+ALW+ +K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR Sbjct: 62 DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK WAL+YT+ L+ F Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDF 176 >gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] Length = 369 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 120/188 (63%), Positives = 150/188 (79%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG I+ G R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ M D Sbjct: 17 TGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEISMSAD 76 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 77 VALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 136 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L SFH R Sbjct: 137 ALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIENDQR 196 Query: 185 ILTRSLRF 192 +L + F Sbjct: 197 LLRDLIAF 204 >gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] Length = 427 Score = 273 bits (699), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 151/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA+W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] Length = 427 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|294840478|ref|ZP_06785161.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. 6014059] Length = 427 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ACICU] gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii ACICU] Length = 427 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AYE] gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] gi|294839369|ref|ZP_06784052.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. 6013113] gi|294859388|ref|ZP_06797157.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. 6013150] gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB056] gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB058] gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB059] gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AYE] gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter baumannii ATCC 17978] gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] Length = 427 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii SDF] gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii] Length = 427 Score = 272 bits (696), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2] gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii TCDC-AB0715] Length = 361 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 16 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 75 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 76 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 135 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 136 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 195 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 196 LRNLIAFYC 204 >gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] Length = 427 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter calcoaceticus PHEA-2] Length = 370 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 25 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 84 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 85 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 144 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 145 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 204 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 205 LRNLIAFYC 213 >gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] Length = 427 Score = 271 bits (692), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] Length = 427 Score = 270 bits (691), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 117/189 (61%), Positives = 149/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+FH + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] Length = 427 Score = 270 bits (691), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] Length = 398 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 144/171 (84%), Gaps = 1/171 (0%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I G RV+V KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 51 TGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQAD 110 Query: 65 LALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 +ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAFE Sbjct: 111 IALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAFE 170 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK WAL+YT+ L+ F Sbjct: 171 EAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDF 221 >gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] Length = 412 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 116/187 (62%), Positives = 147/187 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P FH ++ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LTRSLRF 192 L + F Sbjct: 246 LRELIAF 252 >gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus oceani ATCC 19707] gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] Length = 412 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 116/187 (62%), Positives = 147/187 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P FH ++ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LTRSLRF 192 L + F Sbjct: 246 LRELIAF 252 >gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] Length = 366 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 115/192 (59%), Positives = 151/192 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TG ++ G R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 13 LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 73 MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L+ +FH Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192 Query: 181 RRSRILTRSLRF 192 R+L + F Sbjct: 193 NDQRLLRDLIAF 204 >gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] Length = 415 Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 115/187 (61%), Positives = 147/187 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M D+ Sbjct: 69 GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P FH ++ Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248 Query: 186 LTRSLRF 192 L + F Sbjct: 249 LRELIAF 255 >gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus capsulatus str. Bath] gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus capsulatus str. Bath] Length = 403 Score = 267 bits (682), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 115/188 (61%), Positives = 150/188 (79%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M D Sbjct: 56 TGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNAD 115 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 116 IALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 175 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F + Sbjct: 176 ALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQK 235 Query: 185 ILTRSLRF 192 +L + F Sbjct: 236 LLRELIAF 243 >gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] Length = 427 Score = 267 bits (682), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 115/189 (60%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 408 Score = 267 bits (682), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 113/190 (59%), Positives = 149/190 (78%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NTGL I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL C NHWMP E+ M Sbjct: 59 GNTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMN 118 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAF Sbjct: 119 ADIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAF 178 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEA+H+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +T+ L+ P FH Sbjct: 179 EEALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPEND 238 Query: 183 SRILTRSLRF 192 ++L + F Sbjct: 239 QKLLRELIAF 248 >gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] Length = 458 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 115/188 (61%), Positives = 148/188 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL + G RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M D Sbjct: 111 TGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNAD 170 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 LALWK +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 171 LALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 230 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F + Sbjct: 231 ALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQK 290 Query: 185 ILTRSLRF 192 +L + F Sbjct: 291 LLRELVAF 298 >gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. ADP1] gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter sp. ADP1] Length = 427 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 115/190 (60%), Positives = 147/190 (77%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL I+ G RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 81 AGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHD 140 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQAFEE Sbjct: 141 IALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEE 200 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YTQ+LS P F + Sbjct: 201 AIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPETDQQ 260 Query: 185 ILTRSLRFLC 194 +L + F C Sbjct: 261 LLRNLIAFYC 270 >gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] Length = 427 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 115/189 (60%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] Length = 427 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 115/189 (60%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 381 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 115/188 (61%), Positives = 151/188 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 32 TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 91 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 92 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 151 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH R Sbjct: 152 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 211 Query: 185 ILTRSLRF 192 +L + F Sbjct: 212 LLRDLIAF 219 >gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Lens] gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens] Length = 367 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 115/188 (61%), Positives = 151/188 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 18 TGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 78 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH R Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197 Query: 185 ILTRSLRF 192 +L + F Sbjct: 198 LLRDLIAF 205 >gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella pneumophila str. Corby] gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila str. Corby] gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b] Length = 367 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 115/188 (61%), Positives = 151/188 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 18 TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 78 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH R Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197 Query: 185 ILTRSLRF 192 +L + F Sbjct: 198 LLRDLIAF 205 >gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Paris] gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris] Length = 367 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 115/188 (61%), Positives = 151/188 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 18 TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 78 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH R Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197 Query: 185 ILTRSLRF 192 +L + F Sbjct: 198 LLRDLIAF 205 >gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax borkumensis SK2] gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis SK2] Length = 430 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 112/189 (59%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M DL Sbjct: 84 GVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 143 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 144 ALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 203 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P F + Sbjct: 204 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPETDKAL 263 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 264 LENLIAFYC 272 >gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] Length = 412 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 147/189 (77%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G +R+ VDDK+++N +D+NQL+P KY WAW+KYL C NHWMP E+ M Sbjct: 64 GTGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNA 123 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 124 DIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 183 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY + SLGLDEGE+FNMYREVPS+ KA WAL +T+ L+ P+F Sbjct: 184 EALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEADQ 243 Query: 184 RILTRSLRF 192 ++L + F Sbjct: 244 KLLRELIAF 252 >gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] Length = 355 Score = 260 bits (665), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 111/189 (58%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M DL Sbjct: 9 GVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 68 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 69 ALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 128 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P F + Sbjct: 129 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVETDKAL 188 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 189 LENLIAFYC 197 >gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 493] gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii Dugway 5J108-111] gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 331] gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii RSA 493] gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii Dugway 5J108-111] gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 331] Length = 401 Score = 260 bits (664), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 113/188 (60%), Positives = 148/188 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M D Sbjct: 53 TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F R Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232 Query: 185 ILTRSLRF 192 +L + F Sbjct: 233 LLRDLIAF 240 >gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuG_Q212] gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuG_Q212] Length = 401 Score = 260 bits (664), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 113/188 (60%), Positives = 148/188 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M D Sbjct: 53 TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F R Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232 Query: 185 ILTRSLRF 192 +L + F Sbjct: 233 LLRDLIAF 240 >gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuK_Q154] gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuK_Q154] Length = 401 Score = 260 bits (664), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 113/188 (60%), Positives = 148/188 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M D Sbjct: 53 TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F R Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232 Query: 185 ILTRSLRF 192 +L + F Sbjct: 233 LLRDLIAF 240 >gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri DSM 4166] Length = 415 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY EVPS+ KA+W L+YT+++S P+F + Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LKNLIAYYC 257 >gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri A1501] gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501] Length = 415 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 109/189 (57%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F + Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LKNLIAYYC 257 >gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens DSM 3043] Length = 420 Score = 257 bits (656), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 149/190 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M D Sbjct: 73 AGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNAD 132 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 133 IALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 192 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P FH Sbjct: 193 AIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPETDQE 252 Query: 185 ILTRSLRFLC 194 +L + F C Sbjct: 253 LLRNLIAFYC 262 >gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] Length = 370 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 110/188 (58%), Positives = 145/188 (77%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL + G R+ VDDKR++N R+D+NQL+P KY WAWEKYL NHWMP E+PM D Sbjct: 23 TGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRD 82 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 83 IELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 142 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY+I SL +DEGE+FNMYREVPS+ KA WAL +T++L P F R Sbjct: 143 ALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQR 202 Query: 185 ILTRSLRF 192 +L + F Sbjct: 203 LLRDLIAF 210 >gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter vinelandii DJ] gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter vinelandii DJ] Length = 416 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 108/189 (57%), Positives = 146/189 (77%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP E+ M D+ Sbjct: 70 GLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F ++ Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPETDRQL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLIAYYC 258 >gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] Length = 415 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 108/190 (56%), Positives = 148/190 (77%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M D Sbjct: 68 AGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNAD 127 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 128 IALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 187 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P FH Sbjct: 188 AIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPETDQE 247 Query: 185 ILTRSLRFLC 194 +L + F C Sbjct: 248 LLRNLVAFYC 257 >gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] Length = 362 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 107/188 (56%), Positives = 148/188 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M D Sbjct: 14 TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALW+ GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 74 IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY+I SLG+DE +FNMYRE+P++ K WAL +TQ+L+ P+F R Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193 Query: 185 ILTRSLRF 192 +L + F Sbjct: 194 LLRDLIAF 201 >gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAO1] gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2] gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PA7] gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa LESB58] gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAb1] gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa PAO1] gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7] gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa] gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa LESB58] gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] Length = 415 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 107/189 (56%), Positives = 145/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDRQF 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida F1] gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1] Length = 415 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ + Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina ymp] gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp] Length = 416 Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 146/189 (77%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F+ + Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDRQF 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LKNLIAYYC 258 >gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] Length = 416 Score = 253 bits (647), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ + Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLIAYYC 258 >gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida W619] gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619] Length = 416 Score = 253 bits (647), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ + Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLIAYYC 258 >gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] Length = 421 Score = 253 bits (646), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 145/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDK+M+N R+D+NQL+P KY WAW+KYL C+NHWMP E+ M D+ Sbjct: 75 GLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEINMTKDV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQAFEEA Sbjct: 135 ATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY + SLG+DE E+FNMYREVPSI KA W++++TQ +S+P+F + Sbjct: 195 IHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDEADQEL 254 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 255 LRNLIGFYC 263 >gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter turnerae T7901] gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae T7901] Length = 453 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 108/187 (57%), Positives = 143/187 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 108 GLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMTADV 167 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQAFEEA Sbjct: 168 AIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEA 227 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P FH + Sbjct: 228 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPEADQEL 287 Query: 186 LTRSLRF 192 L + F Sbjct: 288 LRNLIGF 294 >gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] Length = 416 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F + Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDRQF 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLIAYYC 258 >gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] Length = 425 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 108/188 (57%), Positives = 148/188 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G RV+VD+K M+N R+D+NQL+PLKY WAW+KYL C NHWMP E+ M D Sbjct: 78 AGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEINMTAD 137 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 138 VATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 197 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F+ + Sbjct: 198 AIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQETDQE 257 Query: 185 ILTRSLRF 192 +L + F Sbjct: 258 LLRNLIGF 265 >gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida KT2440] gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida GB-1] gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440] gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1] gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1] Length = 416 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ + Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLIAYYC 258 >gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas entomophila L48] gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas entomophila L48] Length = 415 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 143/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ + Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus degradans 2-40] gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 423 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 109/192 (56%), Positives = 145/192 (75%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 72 MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251 Query: 181 RRSRILTRSLRF 192 +L + F Sbjct: 252 ADQELLRNLIGF 263 >gi|330811278|ref|YP_004355740.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 415 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 142/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf0-1] gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens Pf0-1] Length = 416 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 142/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ + Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLIAYYC 258 >gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf-5] gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Pseudomonas fluorescens Pf-5] Length = 415 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 142/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 142/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLVAYYC 258 >gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 142/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLVAYYC 258 >gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] Length = 416 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 142/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 249 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 250 LRNLVAYYC 258 >gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio japonicus Ueda107] gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus Ueda107] Length = 429 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 105/169 (62%), Positives = 141/169 (83%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 83 GLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 142 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 143 ALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 202 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +L +P+F Sbjct: 203 IHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTF 251 >gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae Cit 7] Length = 359 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 105/189 (55%), Positives = 141/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. B076] gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 415 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 105/189 (55%), Positives = 142/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C+NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae 642] gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 415 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 105/189 (55%), Positives = 141/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato K40] gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 415 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 105/189 (55%), Positives = 140/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia rhizoxinica HKI 454] gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1) [Burkholderia rhizoxinica HKI 454] Length = 416 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 110/187 (58%), Positives = 138/187 (73%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 SP A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 72 SPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 131 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 132 WKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 191 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ PSF ++L Sbjct: 192 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEADQKLLK 251 Query: 188 RSLRFLC 194 + F C Sbjct: 252 SLIVFAC 258 >gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] Length = 419 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 109/189 (57%), Positives = 143/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 73 GLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 132 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQAFEEA Sbjct: 133 ATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQAFEEA 192 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L T +LS P+F + Sbjct: 193 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLETDQEL 252 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 253 LRNLIGFYC 261 >gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae B728a] gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv. syringae B728a] gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 415 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 105/189 (55%), Positives = 141/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] Length = 422 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 106/188 (56%), Positives = 143/188 (76%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G R+ V+DK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 75 AGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTAD 134 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQAFEE Sbjct: 135 VALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQAFEE 194 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY + SL +DEGE+FNMYRE+PSI KA W+L++T +LS P+F Sbjct: 195 AIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPETDQE 254 Query: 185 ILTRSLRF 192 +L + F Sbjct: 255 LLRNLIGF 262 >gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 415 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 105/189 (55%), Positives = 140/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 317 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 105/189 (55%), Positives = 140/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADT 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] Length = 421 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 106/189 (56%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 75 GLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA Sbjct: 135 ATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEG +FNMYREVPS+ KA W+L +T +LS P+F ++ Sbjct: 195 IHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVETDQQL 254 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 255 LRNLVGFYC 263 >gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC 17616] Length = 396 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 137/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 53 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 112 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 113 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 172 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L Sbjct: 173 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 232 Query: 189 SLRFLC 194 + F C Sbjct: 233 LIVFAC 238 >gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] Length = 388 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 108/197 (54%), Positives = 146/197 (74%), Gaps = 8/197 (4%) Query: 6 GLSPIQAGEK--------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 G I AGE+ RV V K+M+NAR+DVNQL+P KY WAW+KYL C+NHWMP Sbjct: 34 GEMDIGAGERELEEGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQ 93 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV M D+ALWK NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+ Sbjct: 94 EVNMSADIALWKDPNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYI 153 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 LRQAFEEA+H+H +QY + SLGLD+GE+FNMY+EVPS+ KA W++++ ++ P+F Sbjct: 154 LRQAFEEAIHTHAYQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTG 213 Query: 178 NKRRRSRILTRSLRFLC 194 + L + + C Sbjct: 214 TVEADTTFLKNLIAYYC 230 >gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. TJI49] Length = 403 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 108/194 (55%), Positives = 139/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VAPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] Length = 444 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 105/187 (56%), Positives = 143/187 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ ++ G RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 98 GIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 157 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +LWK +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA Sbjct: 158 SLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 217 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F+ + Sbjct: 218 IHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTETDQEL 277 Query: 186 LTRSLRF 192 L + F Sbjct: 278 LRNLIGF 284 >gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] Length = 411 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 111/201 (55%), Positives = 141/201 (70%), Gaps = 7/201 (3%) Query: 1 MANNTGLSPIQAG-------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 AN+ ++P+ G E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NH Sbjct: 53 FANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANH 112 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 113 WMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPEC 172 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P Sbjct: 173 RQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPG 232 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 F +L + F C Sbjct: 233 FKTGTLETDQTLLRSLIVFAC 253 >gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] Length = 403 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 137/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia multivorans ATCC 17616] gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] Length = 403 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 137/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1710b] gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei 1710b] gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] Length = 376 Score = 246 bits (629), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 107/183 (58%), Positives = 137/183 (74%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK Sbjct: 36 ASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 95 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 96 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 155 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L + Sbjct: 156 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIV 215 Query: 192 FLC 194 F C Sbjct: 216 FAC 218 >gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] Length = 372 Score = 246 bits (629), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 137/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 29 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 88 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 89 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 148 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L Sbjct: 149 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 208 Query: 189 SLRFLC 194 + F C Sbjct: 209 LIVFAC 214 >gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia thailandensis E264] Length = 377 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 107/183 (58%), Positives = 137/183 (74%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK Sbjct: 37 ASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 96 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 97 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 156 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L + Sbjct: 157 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 216 Query: 192 FLC 194 F C Sbjct: 217 FAC 219 >gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured marine bacterium EB0_39H12] Length = 412 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 106/190 (55%), Positives = 139/190 (73%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 G ++ RV VDDK M+N R+D+NQL+P KY WAW+KYL NHWMP EV M D Sbjct: 65 AGEEELEGLAGRVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVNMTAD 124 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT+DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ FEE Sbjct: 125 IALWKSNDGLTEDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQGFEE 184 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY I SLG+DEG +FNMYRE+PS+ KA+W L+YT+ +S P F Sbjct: 185 AIHTHAYQYCIESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDETDKL 244 Query: 185 ILTRSLRFLC 194 +L + F C Sbjct: 245 LLKNLIAFYC 254 >gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei SAVP1] gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10229] gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 668] gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10247] gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1106a] gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei DM98] gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 14] gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 91] gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei B7210] gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 7894] gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 112] gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei SAVP1] gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10229] gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 668] gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106a] gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10247] gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] Length = 403 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 107/183 (58%), Positives = 137/183 (74%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK Sbjct: 63 ASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L + Sbjct: 183 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIV 242 Query: 192 FLC 194 F C Sbjct: 243 FAC 245 >gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 9] gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei BCC215] gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] Length = 372 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 107/183 (58%), Positives = 137/183 (74%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK Sbjct: 32 ASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 91 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 92 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 151 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F ++L + Sbjct: 152 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIV 211 Query: 192 FLC 194 F C Sbjct: 212 FAC 214 >gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei K96243] gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei ATCC 23344] gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei K96243] gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 23344] Length = 350 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 111/194 (57%), Positives = 141/194 (72%), Gaps = 2/194 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 178 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 179 ADQKLLKSLIVFAC 192 >gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis TXDOH] gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis Bt4] gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] Length = 350 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 111/194 (57%), Positives = 141/194 (72%), Gaps = 2/194 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 178 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 179 ADQKLLKSLIVFAC 192 >gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. mori str. 301020] Length = 415 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 103/189 (54%), Positives = 140/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNKTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F + Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LTRSLRFLC 194 L + + C Sbjct: 249 LRNLIAYYC 257 >gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] Length = 441 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 104/171 (60%), Positives = 138/171 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D Sbjct: 94 AGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTAD 153 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +A WK+ GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 154 VATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEE 213 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 A+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W+L +T LS P+F+ Sbjct: 214 AIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFN 264 >gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] Length = 403 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. 383] gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383] Length = 403 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria AMMD] gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria MC40-6] gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD] gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MC40-6] Length = 403 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] Length = 403 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia J2315] gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia cenocepacia J2315] Length = 403 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia vietnamiensis G4] gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis G4] Length = 403 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 345 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 108/175 (61%), Positives = 136/175 (77%), Gaps = 1/175 (0%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK GLT Sbjct: 8 RVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPKGLT 67 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 68 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 127 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 SLGLDEGE+FNMY EVPS+ AK + + + +TL+ P F R + L RSL Sbjct: 128 ESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQT-GTRENDQKLLRSL 181 >gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia MC0-3] gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia MC0-3] Length = 403 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 SLRFLC 194 + F C Sbjct: 240 LIVFAC 245 >gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] Length = 469 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 102/169 (60%), Positives = 137/169 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 123 GLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 182 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK+ GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA Sbjct: 183 ATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 242 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +T LS P+F Sbjct: 243 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNF 291 >gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia AU 1054] gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia HI2424] gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU 1054] gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia HI2424] Length = 382 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 106/186 (56%), Positives = 136/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 39 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 98 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 99 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 158 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 159 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 218 Query: 189 SLRFLC 194 + F C Sbjct: 219 LIVFAC 224 >gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira multiformis ATCC 25196] gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC 25196] Length = 408 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 106/180 (58%), Positives = 137/180 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M D+ALWK NGL Sbjct: 71 RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNGL 130 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QYI Sbjct: 131 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQYI 190 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDEGE+FN Y EV SI K + + + TL+ PSF ++L + F C Sbjct: 191 VESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFAC 250 >gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 374 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 108/176 (61%), Positives = 137/176 (77%), Gaps = 1/176 (0%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK GL Sbjct: 37 ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 97 TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 + S+GLDEGE+FNMY EVPSI AK + L + +TL+ PSFH ++L RSL Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLL-RSL 211 >gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] Length = 414 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 107/181 (59%), Positives = 134/181 (74%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 136 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F +L + F Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 255 Query: 194 C 194 C Sbjct: 256 C 256 >gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis EO147] Length = 369 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 106/183 (57%), Positives = 136/183 (74%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK Sbjct: 29 ASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 88 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 89 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 148 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L + Sbjct: 149 QYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 208 Query: 192 FLC 194 F C Sbjct: 209 FAC 211 >gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] Length = 414 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 107/181 (59%), Positives = 133/181 (73%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F +L + F Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255 Query: 194 C 194 C Sbjct: 256 C 256 >gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas europaea ATCC 19718] gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718] Length = 382 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 105/180 (58%), Positives = 137/180 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NGL Sbjct: 45 RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGL 104 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QYI Sbjct: 105 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 164 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + S+GLDEGE+FN Y E+ SI K + + + TL+ PSF ++L + F C Sbjct: 165 VESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVFAC 224 >gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] Length = 411 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 7/201 (3%) Query: 1 MANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NH Sbjct: 53 FANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANH 112 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 113 WMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPEC 172 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+ Sbjct: 173 RQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPA 232 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 F +L + F C Sbjct: 233 FKTGTLEADQTLLRSLIVFAC 253 >gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] Length = 411 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 7/201 (3%) Query: 1 MANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NH Sbjct: 53 FANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANH 112 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 113 WMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPEC 172 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+ Sbjct: 173 RQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPA 232 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 F +L + F C Sbjct: 233 FKTGTLEADQTLLRSLIVFAC 253 >gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas eutropha C91] gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91] Length = 377 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 104/180 (57%), Positives = 138/180 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NGL Sbjct: 40 RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGL 99 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QYI Sbjct: 100 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 159 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + S+GLDEGE+FN Y E+ SI K + + + TL++P+F ++L + F C Sbjct: 160 VESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFAC 219 >gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis C6786] Length = 369 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 106/183 (57%), Positives = 136/183 (74%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK Sbjct: 29 ASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 88 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 89 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 148 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L + Sbjct: 149 QYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLKSLIV 208 Query: 192 FLC 194 F C Sbjct: 209 FAC 211 >gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] Length = 432 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 101/169 (59%), Positives = 137/169 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP E+ M D+ Sbjct: 86 GLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEINMTADV 145 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA Sbjct: 146 ATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 205 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +LS P+F Sbjct: 206 IHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNF 254 >gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] Length = 415 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 11/205 (5%) Query: 1 MANNTGLSPIQ------AG-----EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49 AN+ ++P+ AG E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ Sbjct: 53 FANDIAVAPVAHVTNAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAG 112 Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 C NHWMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 113 CANHWMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 172 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L Sbjct: 173 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVL 232 Query: 170 SSPSFHYWNKRRRSRILTRSLRFLC 194 + P+F +L + F C Sbjct: 233 TDPAFKTGTLEADQTLLRSLIVFAC 257 >gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phytofirmans PsJN] gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans PsJN] Length = 415 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 11/205 (5%) Query: 1 MANNTGLSPIQ-----------AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49 AN+ ++P+ E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ Sbjct: 53 FANDMAVAPVAHVTHAAAETAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAG 112 Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 C NHWMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 113 CANHWMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 172 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L Sbjct: 173 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVL 232 Query: 170 SSPSFHYWNKRRRSRILTRSLRFLC 194 + P+F +L + F C Sbjct: 233 TDPAFKTGTLEADQTLLRSLIVFAC 257 >gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia xenovorans LB400] gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans LB400] Length = 411 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 11/205 (5%) Query: 1 MANNTGLSPIQ------AG-----EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49 AN+ ++P+ AG E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ Sbjct: 49 FANDIAVAPVAHVTHAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAG 108 Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 C NHWMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 109 CANHWMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 168 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L Sbjct: 169 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVL 228 Query: 170 SSPSFHYWNKRRRSRILTRSLRFLC 194 + P+F +L + F C Sbjct: 229 TDPAFKTGTLEADQTLLRSLIVFAC 253 >gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phymatum STM815] gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815] Length = 407 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 106/181 (58%), Positives = 134/181 (74%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M D+ALWK NG Sbjct: 69 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F ++L + F Sbjct: 189 IVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 248 Query: 194 C 194 C Sbjct: 249 C 249 >gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium vinosum DSM 180] Length = 280 Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 102/164 (62%), Positives = 132/164 (80%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D+NQL+P KY WAW+KYL AC NHWMP E+ M DLALWK +GLT+DERL++KRNLGF Sbjct: 1 ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM Sbjct: 61 FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120 Query: 149 YREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YREVP++ KA WAL +TQ L+ P F ++L + F Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAF 164 >gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] Length = 382 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 104/179 (58%), Positives = 134/179 (74%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK+ NGLT Sbjct: 46 RIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWKNPNGLT 105 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER ++KRNLGFF +++SL ANNI L YRH++NPECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 106 DDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 165 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDEGE+FNMY EV SI K + L + L++P F ++L + F C Sbjct: 166 ESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSLIVFAC 224 >gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris marina MBIC11017] gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris marina MBIC11017] Length = 384 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 101/180 (56%), Positives = 136/180 (75%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+ALWK+ +GL Sbjct: 47 RRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALWKTTDGL 106 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 107 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 166 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDEGE+FN YREV I K + + + +TL+ P+F ++L + F C Sbjct: 167 VESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKSLIAFSC 226 >gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ubonensis Bu] Length = 403 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 104/179 (58%), Positives = 134/179 (74%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L + F C Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFAC 245 >gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella petrii DSM 12804] gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii] Length = 396 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 102/183 (55%), Positives = 135/183 (73%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ Sbjct: 56 AAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 115 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 116 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 175 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SL LDE E+FN Y EVPSI AK + + + + ++ P+FH ++L + Sbjct: 176 QYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLIV 235 Query: 192 FLC 194 F C Sbjct: 236 FAC 238 >gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia acidovorans SPH-1] gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1] Length = 363 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 105/180 (58%), Positives = 133/180 (73%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 86 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDEGE+FN Y EVPSI K + + + + + P+F +L + F C Sbjct: 146 VESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLIVFAC 205 >gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] Length = 407 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 104/191 (54%), Positives = 139/191 (72%), Gaps = 4/191 (2%) Query: 8 SPIQAG----EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 +P QA ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 59 APAQASAAGSQERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 118 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 119 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 178 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGLDEGE+FN Y E+ SI K + + + TL+ P+F Sbjct: 179 EAIHTHAYQYIVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQ 238 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 239 KLLKSLIVFAC 249 >gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] Length = 365 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 107/179 (59%), Positives = 135/179 (75%), Gaps = 1/179 (0%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M D+ALWKS + L+ Sbjct: 30 RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER +IKRNLGFF +++SL ANNIVL YRH++NPECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 89 DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDEGE+FNMY EVPSI K + L Y L++P F +L + F C Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFAC 207 >gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] Length = 376 Score = 237 bits (605), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 101/179 (56%), Positives = 131/179 (73%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M D+A WK L+ Sbjct: 40 RVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTALS 99 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQ FEEA+H+H +QYI+ Sbjct: 100 DDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQGFEEAIHTHAYQYIV 159 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y+E+PSI AK ++ + + TL+ P+F +L + F C Sbjct: 160 ESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAEADQELLRSLIVFAC 218 >gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella pertussis Tohama I] gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella parapertussis 12822] gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella bronchiseptica RB50] gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella pertussis Tohama I] gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella parapertussis] gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella bronchiseptica RB50] Length = 398 Score = 237 bits (605), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 106/193 (54%), Positives = 138/193 (71%), Gaps = 2/193 (1%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + G S AG RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 50 AASLGASDATAG--RVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINM 107 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 108 SRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 167 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+FH Sbjct: 168 FEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEA 227 Query: 182 RSRILTRSLRFLC 194 ++L + F C Sbjct: 228 DQKLLKSLIVFAC 240 >gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia glumae BGR1] gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia glumae BGR1] Length = 407 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 101/181 (55%), Positives = 136/181 (75%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG Sbjct: 69 QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +++RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F + ++L + F Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248 Query: 194 C 194 C Sbjct: 249 C 249 >gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta [Verminephrobacter eiseniae EF01-2] gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae EF01-2] Length = 399 Score = 236 bits (603), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 141/199 (70%), Gaps = 9/199 (4%) Query: 5 TGLSPIQAG---------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 TG++P +G ++RVN DKR++N ++DVNQL+PLKY WAWEKYL++C NHWM Sbjct: 43 TGIAPASSGTRHQAPDAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANHWM 102 Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV M D+ALWK+ GL+DDER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ Sbjct: 103 PQEVNMTRDIALWKTPGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ 162 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 +LLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P FH Sbjct: 163 FLLRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPHFH 222 Query: 176 YWNKRRRSRILTRSLRFLC 194 + +L + F C Sbjct: 223 TGSAANDQTLLKSLIVFAC 241 >gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] Length = 328 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 106/183 (57%), Positives = 133/183 (72%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A KRVNV +KR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 17 ATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMARDIALWKDP 76 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H + Sbjct: 77 NGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 136 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF ++L + Sbjct: 137 QYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDRKLLKSLIV 196 Query: 192 FLC 194 F C Sbjct: 197 FAC 199 >gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] Length = 363 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 103/180 (57%), Positives = 132/180 (73%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 86 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + + + + + P+FH +L + F C Sbjct: 146 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 205 >gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium sp. Marseille] gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium sp. Marseille] Length = 392 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 101/180 (56%), Positives = 134/180 (74%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ NGL Sbjct: 55 RRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGL 114 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 115 TDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 174 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDEGE+FN Y EV SI K + + + +TL+ P F ++L + F C Sbjct: 175 VESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVFAC 234 >gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] Length = 363 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 103/180 (57%), Positives = 132/180 (73%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 86 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + + + + + P+FH +L + F C Sbjct: 146 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 205 >gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] Length = 381 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 104/189 (55%), Positives = 137/189 (72%), Gaps = 2/189 (1%) Query: 8 SPIQAGE--KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P AG +R+ V+DK+++N +DVNQL+P KY WAW+KYL AC NHWMP E+ M D+ Sbjct: 35 EPAVAGSANRRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDI 94 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALW+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA Sbjct: 95 ALWRDPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEA 154 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QYI+ SLGLDEGE+FN Y EV SI K + + + TL++P F ++ Sbjct: 155 IHTHAYQYIVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLETDQQL 214 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 215 LRSLIVFAC 223 >gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] Length = 347 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 102/163 (62%), Positives = 133/163 (81%), Gaps = 2/163 (1%) Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G +R+ V+DKR++N DVNQL+P+KY WAWE YL+ C NHWMP+E+PM D+ LW+S Sbjct: 8 GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F Sbjct: 67 DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 YI+ SLGLDEGE+FNMYRE+P++ K + ++ T+ + P F Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDF 169 >gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 394 Score = 234 bits (597), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 106/196 (54%), Positives = 138/196 (70%), Gaps = 6/196 (3%) Query: 5 TGLSPIQAGEK------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58 T +P++A RVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E Sbjct: 41 TAPAPVEAANLSGGAALRVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQE 100 Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 + M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLL Sbjct: 101 INMNRDIALWKDPNGLTEDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLL 160 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 RQAFEEA+H+H +QYI+ SLGLD+ E+FN Y E+ SI AK + + Y L++P+F Sbjct: 161 RQAFEEAIHTHAYQYIVESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKTGT 220 Query: 179 KRRRSRILTRSLRFLC 194 +L + F C Sbjct: 221 LETDQTLLRSLIVFAC 236 >gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like [Ralstonia solanacearum CFBP2957] gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CFBP2957] Length = 402 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 106/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + TL+ PSF Sbjct: 171 AFEEAIHTHAYQYIVESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 231 NDQKLLKSLIVFAC 244 >gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax benzoatilyticus JA2] Length = 385 Score = 233 bits (595), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 105/195 (53%), Positives = 136/195 (69%), Gaps = 5/195 (2%) Query: 5 TGLSPIQ-----AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 T SP+ A +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV Sbjct: 33 TNASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEV 92 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLR Sbjct: 93 NMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLR 152 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 QAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I K + + + + P+F Sbjct: 153 QAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGTP 212 Query: 180 RRRSRILTRSLRFLC 194 +L + F C Sbjct: 213 EADQTLLKSLIVFAC 227 >gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside diphosphate reductase, beta subunit) [Thiomonas sp. 3As] Length = 410 Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 106/187 (56%), Positives = 136/187 (72%), Gaps = 4/187 (2%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP EV M D+A+WK Sbjct: 66 ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKDP 125 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H + Sbjct: 126 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 185 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH---YWNKRRRSRILTR 188 QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F + R + L R Sbjct: 186 QYIVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 245 Query: 189 S-LRFLC 194 S + F C Sbjct: 246 SIIVFAC 252 >gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum seropedicae SmR1] gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 233 bits (595), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 101/180 (56%), Positives = 131/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ NGL Sbjct: 51 RRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGL 110 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 111 TEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 170 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + + + TL+ P F ++L + F C Sbjct: 171 VESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFAC 230 >gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium petroleiphilum PM1] gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum PM1] Length = 403 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 103/183 (56%), Positives = 132/183 (72%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK Sbjct: 63 AGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDP 122 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 123 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDE E+FN Y EV SI K + + + + P+FH +L + Sbjct: 183 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSLIV 242 Query: 192 FLC 194 F C Sbjct: 243 FAC 245 >gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax ferrireducens T118] gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens T118] Length = 400 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/193 (54%), Positives = 136/193 (70%), Gaps = 1/193 (0%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 AN G + + +RVN DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M Sbjct: 51 ANQRG-AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNM 109 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 110 TRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F Sbjct: 170 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEA 229 Query: 182 RSRILTRSLRFLC 194 +L + F C Sbjct: 230 DQTLLKSLIVFAC 242 >gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter hongkongensis HLHK9] gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter hongkongensis HLHK9] Length = 357 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/191 (54%), Positives = 134/191 (70%), Gaps = 1/191 (0%) Query: 5 TGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 +SP +G RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ Sbjct: 9 VAVSPAGSGTGGRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQR 68 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ LWK NGLTDDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 69 DIELWKRPNGLTDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 128 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGLDEGE+FN Y E+ SI AK + + + TL P+F Sbjct: 129 EAIHTHAYQYIVESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQ 188 Query: 184 RILTRSLRFLC 194 +L + F C Sbjct: 189 LLLKSLIVFAC 199 >gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] Length = 402 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/187 (56%), Positives = 136/187 (72%), Gaps = 4/187 (2%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP E+ M D+A+WK Sbjct: 58 ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKDP 117 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H + Sbjct: 118 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 177 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH---YWNKRRRSRILTR 188 QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F + R + L R Sbjct: 178 QYIVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 237 Query: 189 S-LRFLC 194 S + F C Sbjct: 238 SIIVFAC 244 >gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas arsenicoxydans] gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Herminiimonas arsenicoxydans] Length = 395 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/202 (51%), Positives = 138/202 (68%), Gaps = 9/202 (4%) Query: 2 ANNTGLSP-IQAGEKRVNVD--------DKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 A + L P + AG+ VD DKR++N ++DVNQL+P KY WAW+KYL+ C N Sbjct: 36 AQDVALDPAVMAGKPAATVDPTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCAN 95 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 HWMP E+ MQ D+ LWK+ NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PE Sbjct: 96 HWMPQEINMQRDIELWKNPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 CRQYLLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y E+ SI K + + + L+ P Sbjct: 156 CRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDP 215 Query: 173 SFHYWNKRRRSRILTRSLRFLC 194 +F +L + F C Sbjct: 216 NFTTGTTENDQTLLRSLIVFAC 237 >gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] Length = 398 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 102/180 (56%), Positives = 131/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 61 RRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 120 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 121 TDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + + + + + P+F R+L + F C Sbjct: 181 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFAC 240 >gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas naphthalenivorans CJ2] gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans CJ2] Length = 387 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 103/185 (55%), Positives = 131/185 (70%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I A KRV DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M D+ALWK Sbjct: 45 IPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNMTRDIALWK 104 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGL+DDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H Sbjct: 105 DPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTH 164 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +QYI SLGLDEGE+FN Y EV SI K + + + + +S P F +L Sbjct: 165 AYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLESDQTLLKSL 224 Query: 190 LRFLC 194 + F C Sbjct: 225 IVFAC 229 >gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CMR15] Length = 398 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 48 LGNNPNAAAAQSS-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 106 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 107 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 166 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 167 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 226 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 227 NDQKLLKSLIVFAC 240 >gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans C54] Length = 399 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 101/183 (55%), Positives = 133/183 (72%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ Sbjct: 59 ATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 118 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 119 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 178 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F +L + Sbjct: 179 QYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIV 238 Query: 192 FLC 194 F C Sbjct: 239 FAC 241 >gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia solanacearum GMI1000] gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 400 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 50 LGNNPNAAAAQSS-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 109 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 168 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 169 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 228 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 229 NDQKLLKSLIVFAC 242 >gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus metallidurans CH34] gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus metallidurans CH34] Length = 395 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 45 LGNNPNAAAAQS-TRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 104 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 163 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 164 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 223 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 224 NDQKLLKSLIVFAC 237 >gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Cupriavidus taiwanensis LMG 19424] Length = 396 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 46 LGNNPNAAAAQSN-RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 104 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 105 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 164 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 165 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 224 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 225 NDQKLLKSLIVFAC 238 >gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] Length = 402 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 231 NDQKLLKSLIVFAC 244 >gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] Length = 402 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 231 NDQKLLKSLIVFAC 244 >gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax paradoxus S110] gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110] Length = 391 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 101/179 (56%), Positives = 129/179 (72%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 55 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y EVPSI K + + + +S P+F +L + F C Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFAC 233 >gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 380 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 96/160 (60%), Positives = 126/160 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL Sbjct: 43 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 102 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI Sbjct: 103 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 162 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 + S+GLDEGE+FNMY EVPS+ K + + + L+ P F Sbjct: 163 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHF 202 >gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 394 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 102/179 (56%), Positives = 131/179 (73%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 58 RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLD+ E+FN Y E+ SI AK + + Y L++P+F +L + F C Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFAC 236 >gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 374 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 96/160 (60%), Positives = 126/160 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL Sbjct: 37 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 96 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI Sbjct: 97 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 156 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 + S+GLDEGE+FNMY EVPS+ K + + + L+ P F Sbjct: 157 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHF 196 >gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha H16] gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia eutropha H16] Length = 395 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 102/180 (56%), Positives = 130/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 58 RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 117 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 118 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 177 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGL+E E+FN Y EV SI K + + + TL+ PSF ++L + F C Sbjct: 178 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 237 >gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] Length = 410 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 60 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 118 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 119 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 178 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 179 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 238 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 239 NDQKLLKSLIVFAC 252 >gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium 197N] gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium 197N] Length = 394 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 100/180 (55%), Positives = 132/180 (73%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 57 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 117 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 176 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F +L + F C Sbjct: 177 VESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 236 >gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] Length = 396 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 100/180 (55%), Positives = 132/180 (73%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 59 RRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNGL 118 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 119 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 178 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDEGE+FN Y EV SI AK + + + + + P+F +L + F C Sbjct: 179 VESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFAC 238 >gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12D] gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 402 Score = 231 bits (589), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 102/180 (56%), Positives = 130/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGL+E E+FN Y EV SI K + + + TL+ PSF ++L + F C Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244 >gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] Length = 399 Score = 231 bits (589), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 100/180 (55%), Positives = 132/180 (73%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 62 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F +L + F C Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241 >gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] Length = 398 Score = 231 bits (588), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 100/180 (55%), Positives = 131/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 61 QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 120 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 121 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F +L + F C Sbjct: 181 VESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 240 >gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha JMP134] gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134] Length = 394 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 104/194 (53%), Positives = 135/194 (69%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 44 LGNNPNAAAAQSN-RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 102 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 103 MSRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 162 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 163 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 222 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 223 NDQKLLKSLIVFAC 236 >gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] Length = 399 Score = 230 bits (587), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 103/188 (54%), Positives = 131/188 (69%), Gaps = 2/188 (1%) Query: 9 PIQAGEK--RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P G K RVN DKR++N +DVNQL+P KY WAWEKYLS C NHWMP E+ M D+A Sbjct: 54 PAAEGAKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIA 113 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 LWK NGLT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF+EA+ Sbjct: 114 LWKDPNGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAI 173 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 H+H +QYI+ SLG+ E E FN Y E+ I AK ++ L + L+ PSF +L Sbjct: 174 HTHAYQYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLL 233 Query: 187 TRSLRFLC 194 + F C Sbjct: 234 KSLIAFAC 241 >gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp. T7-7] Length = 387 Score = 230 bits (587), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 102/198 (51%), Positives = 135/198 (68%), Gaps = 7/198 (3%) Query: 4 NTGLSPIQA-------GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 N ++P A G RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP Sbjct: 32 NDAMAPTPAAAGSTADGSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMP 91 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ M D++LWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+ Sbjct: 92 QEINMSRDISLWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQF 151 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 LLRQAFEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P F Sbjct: 152 LLRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQT 211 Query: 177 WNKRRRSRILTRSLRFLC 194 +L + F C Sbjct: 212 GTPEADQTLLKSLIVFAC 229 >gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] Length = 377 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 102/191 (53%), Positives = 134/191 (70%), Gaps = 4/191 (2%) Query: 8 SPIQAGEK----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 +P+ A + RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M Sbjct: 29 TPVAANQPSISGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSR 88 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK LTDDERL++KRNLGFF +++SL ANNIVL YRH++ PE RQYLLRQ FE Sbjct: 89 DIAQWKDSTALTDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFE 148 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGLDE E+FN Y+EV SI K ++ + + TL++P F Sbjct: 149 EAIHTHAYQYIVESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQ 208 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 209 QLLRSLIVFAC 219 >gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12J] gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J] Length = 402 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 104/194 (53%), Positives = 135/194 (69%), Gaps = 1/194 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 231 NDQKLLKSLIVFAC 244 >gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] Length = 336 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 100/178 (56%), Positives = 130/178 (73%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT+ Sbjct: 1 MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 61 DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y EV SI K + + + + + P+FH +L + F C Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 178 >gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix cholodnii SP-6] gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6] Length = 402 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 102/180 (56%), Positives = 127/180 (70%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK NGL Sbjct: 65 RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER +IKRNLGFF +++SL ANNI L YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + + Y + P F +L + F C Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244 >gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 387 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 101/183 (55%), Positives = 130/183 (71%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 47 AQHRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 106 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 107 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 166 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDE E+FN Y EV SI K + + + + + P F +L + Sbjct: 167 QYIVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIV 226 Query: 192 FLC 194 F C Sbjct: 227 FAC 229 >gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 416 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 101/180 (56%), Positives = 129/180 (71%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +R+N DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWKS NGL Sbjct: 79 RRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKSPNGL 138 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 139 TDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 198 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y EV SI K + + + L+ P F ++L + F C Sbjct: 199 TESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLKSLIVFSC 258 >gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] Length = 411 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 101/180 (56%), Positives = 128/180 (71%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 74 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + L + +S P F +L + F C Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253 >gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp. JS42] gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax ebreus TPSY] gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42] gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY] Length = 396 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 100/180 (55%), Positives = 130/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 59 RRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 118 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 119 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 178 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDEGE+FN Y EV SI K + + + + + P F +L + F C Sbjct: 179 VESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPESDQTLLKSLIVFAC 238 >gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax citrulli AAC00-1] gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1] Length = 387 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 100/180 (55%), Positives = 129/180 (71%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 50 RRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 109 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 110 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 169 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + + + + + P F +L + F C Sbjct: 170 VESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFAC 229 >gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp. JS666] gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666] Length = 406 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 100/179 (55%), Positives = 127/179 (70%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 70 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y EV SI K + + + + +S P F +L + F C Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFAC 248 >gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella gracilis ATCC 19624] Length = 399 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 100/183 (54%), Positives = 130/183 (71%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 +G R+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 59 SGTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDP 118 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 119 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 178 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDE E+F+ Y EV SI K + L + + P+FH +L + Sbjct: 179 QYIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFHTGTLETDQTLLKSLIV 238 Query: 192 FLC 194 F C Sbjct: 239 FAC 241 >gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] Length = 381 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 98/179 (54%), Positives = 131/179 (73%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK + LT Sbjct: 45 RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 104 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 105 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 164 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y+EV SI K ++ + + TL+ P F + ++L + F C Sbjct: 165 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFAC 223 >gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] Length = 383 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 98/179 (54%), Positives = 131/179 (73%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK + LT Sbjct: 47 RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 106 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 107 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 166 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y+EV SI K ++ + + TL+ P F + ++L + F C Sbjct: 167 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFAC 225 >gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus denitrificans ATCC 25259] Length = 376 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 98/179 (54%), Positives = 127/179 (70%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK LT Sbjct: 40 RVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTALT 99 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 100 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 159 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y E+ SI K ++ + + TL++P F ++L + F C Sbjct: 160 ESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFAC 218 >gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] Length = 313 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 101/161 (62%), Positives = 131/161 (81%), Gaps = 2/161 (1%) Query: 15 KRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV +DKR++N ++ DVNQL+PLKY WAWE Y++ C NHWMPTEVPM D+ W+S + Sbjct: 16 QRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTEVPMTKDIETWRS-DK 74 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVHSHTF Y Sbjct: 75 LTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHSHTFLY 134 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 ++ SLGL+EGE+FNMY EVP+I K + ++ T + SP F Sbjct: 135 VVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDF 175 >gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] Length = 353 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 101/161 (62%), Positives = 126/161 (78%), Gaps = 2/161 (1%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM D+ LW+S N Sbjct: 17 QRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELWRS-NA 75 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+H F Y Sbjct: 76 LTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHTHAFHY 135 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 I+ SLGLD E+FNMYREV SI K + + T+ + P F Sbjct: 136 IVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDF 176 >gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] Length = 353 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/166 (60%), Positives = 129/166 (77%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + A R +KR++N A+ DVNQL+P+KY WAWE YL+ C NHWMPTEVPM D+ +W Sbjct: 12 LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+ Sbjct: 72 KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF Y++ SLGL EGE+FNMY EVP+I K + ++ T + S F Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDF 176 >gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon aurantiacus ATCC 23779] gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus ATCC 23779] Length = 342 Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 97/160 (60%), Positives = 125/160 (78%), Gaps = 2/160 (1%) Query: 16 RVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R N DKR++N + DVNQL+PL+YGWAWE YL+ C NHWMP EV M D+A+W+S + L Sbjct: 7 RFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRSTS-L 65 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F +I Sbjct: 66 SADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLHI 125 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 + SLGL+E E+FNMY E+P I+ K + +Q T + P F Sbjct: 126 VESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQF 165 >gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] Length = 360 Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 96/182 (52%), Positives = 128/182 (70%), Gaps = 1/182 (0%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+ WK+ Sbjct: 22 GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTGQ 81 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DE ++KRNLGFF +++SL ANNIVL YR ++ PECRQ+LLRQAF+EA+H+H +Q Sbjct: 82 -LSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGLDEGE+FN Y E+ SI K + + + TL +P F ++L + F Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200 Query: 193 LC 194 C Sbjct: 201 AC 202 >gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] Length = 357 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 96/156 (61%), Positives = 127/156 (81%), Gaps = 2/156 (1%) Query: 20 DDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++KR++N + DVNQL+P+KY WAWE Y + C NHWMP+EVPM D+ W++ + LTDDE Sbjct: 26 EEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRTGS-LTDDE 84 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ SL Sbjct: 85 KLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVESL 144 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 GLD+ E+FNMYRE+PSI K + +Q T L P+F Sbjct: 145 GLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNF 180 >gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium violaceum ATCC 12472] gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium violaceum ATCC 12472] Length = 360 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 96/182 (52%), Positives = 128/182 (70%), Gaps = 1/182 (0%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVNV DK+++N +DVNQL+P K+ WAWEKYL+ C NHWMP EV MQ D+ WK+ Sbjct: 22 GTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTGQ 81 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT+DE ++KRNLGFF +++SL ANNIVL YR +++PECRQ+LLRQAF+EA+H+H +Q Sbjct: 82 -LTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQAFDEAIHTHAYQ 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGLDEGE+FN Y EV SI K + + + L +P F ++L + F Sbjct: 141 YIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVENDQKLLKSLIVF 200 Query: 193 LC 194 C Sbjct: 201 AC 202 >gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] Length = 344 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 97/155 (62%), Positives = 126/155 (81%), Gaps = 2/155 (1%) Query: 16 RVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R D K+++N + DVNQLLPLKY WAWE YL+ C NHWMP+EVPM D+ WKS + + Sbjct: 11 RFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-DSI 69 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F YI Sbjct: 70 SEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFLYI 129 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + SLGL+E E+FNMYRE+ +I+ K + +Q T+ L Sbjct: 130 VDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGL 164 >gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] Length = 361 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 97/154 (62%), Positives = 119/154 (77%), Gaps = 2/154 (1%) Query: 22 KRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N DVNQL+PLKY WAWE YL+ C NHWMPTEVPM D+ W+S N LT ERL Sbjct: 32 KRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMTKDIETWRS-NKLTAGERL 90 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAFEEA+H+HTF YI+ SLGL Sbjct: 91 VIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAFEEAIHTHTFLYIVESLGL 150 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 E E+FNMY E+PSI K + +Q T + P F Sbjct: 151 SEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDF 184 >gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta [Methylacidiphilum infernorum V4] gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum infernorum V4] Length = 361 Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 98/163 (60%), Positives = 130/163 (79%), Gaps = 2/163 (1%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N Sbjct: 25 KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F Sbjct: 84 RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 YI+ SLGLDE E+FNMY EV SI+ K + + T+ + F+ Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFN 186 >gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] Length = 359 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 100/172 (58%), Positives = 126/172 (73%), Gaps = 3/172 (1%) Query: 5 TGLSPI-QAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T +SP+ R D KR++N ++ DVNQL+PLKY WAWE YL+ C NHWMPTEV M Sbjct: 12 TPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMPTEVGMT 71 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W+S L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQYLLRQAF Sbjct: 72 KDIETWRSSK-LSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQYLLRQAF 130 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 EEAVHSHTF YI+ SLGL+E E+FNMY EVP+I K ++ T + F Sbjct: 131 EEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDF 182 >gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila caviae GPIC] gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila caviae GPIC] Length = 346 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 127/161 (78%), Gaps = 2/161 (1%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS N Sbjct: 11 KRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-ND 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 I SLGLDEGE+FN Y E +I AK ++ + T + +P+F Sbjct: 130 ICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNF 170 >gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila felis Fe/C-56] gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila felis Fe/C-56] Length = 349 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 96/166 (57%), Positives = 128/166 (77%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E +I AK ++ + T+ + P+F Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNF 173 >gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D/UW-3/CX] gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276] gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276s] gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis D/UW-3/CX] gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9768] gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11222] gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11074] gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9301] gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-EC] gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-LC] Length = 346 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 95/166 (57%), Positives = 129/166 (77%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNF 170 >gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis A/HAR-13] gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/Jali20/OT] gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/TZ1A828/OT] gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70] gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70s] gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D(s)2923] gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis A/HAR-13] gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/Jali20/OT] gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis Sweden2] gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/150] gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/11023] Length = 346 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 95/166 (57%), Positives = 129/166 (77%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNF 170 >gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 434/Bu] gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2tet1] gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis 434/Bu] gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 346 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 95/166 (57%), Positives = 129/166 (77%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNF 170 >gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC] gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila psittaci 6BC] Length = 346 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/166 (57%), Positives = 127/166 (76%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KSNN-LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNF 170 >gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Weiss] gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum MopnTet14] gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia muridarum Nigg] Length = 346 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/166 (57%), Positives = 128/166 (77%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E SI AK ++ ++ T + P+F Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNF 170 >gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila psittaci RD1] Length = 349 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/166 (57%), Positives = 127/166 (76%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KSNN-LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNF 173 >gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 350 Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 97/162 (59%), Positives = 124/162 (76%), Gaps = 2/162 (1%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E KR+LN + DVNQL+PLKY WAWE YL+ C+N+WMP+EVPMQ D+ LWKS N Sbjct: 14 EAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKS-N 72 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLRQAFEEAVH+HTF Sbjct: 73 RLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTFH 132 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 YI+ SL LD+ E+F+MY V SI AK + ++ T+ + F Sbjct: 133 YIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGF 174 >gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae TW-183] gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae TW-183] Length = 365 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 124/161 (77%), Gaps = 2/161 (1%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 30 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 88 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 89 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 148 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 I SLGLDEGE+FN Y E SI AK ++ + T + P+F Sbjct: 149 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNF 189 >gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/166 (56%), Positives = 129/166 (77%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HT+ YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNF 170 >gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae CWL029] gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae J138] gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae AR39] gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae CWL029] gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae AR39] gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae J138] gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 346 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 124/161 (77%), Gaps = 2/161 (1%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 11 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 I SLGLDEGE+FN Y E SI AK ++ + T + P+F Sbjct: 130 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNF 170 >gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila abortus S26/3] gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila abortus S26/3] Length = 349 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/166 (57%), Positives = 126/166 (75%), Gaps = 2/166 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE Y++ C N W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KSNN-LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNF 173 >gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila pecorum E58] gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pecorum E58] Length = 346 Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 94/161 (58%), Positives = 126/161 (78%), Gaps = 2/161 (1%) Query: 15 KRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV++++KR++N ++ DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LWKS NG Sbjct: 11 KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 I SL LDE E+FN Y E SI AK ++ + T + P+F Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNF 170 >gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated [Chlamydophila pneumoniae LPCoLN] Length = 159 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 92/142 (64%), Positives = 114/142 (80%), Gaps = 2/142 (1%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 11 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSI 155 I SLGLDEGE+FN Y E SI Sbjct: 130 ICESLGLDEGEVFNAYNERASI 151 >gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa] Length = 146 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 81/118 (68%), Positives = 99/118 (83%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 T+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q Sbjct: 86 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 143 >gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 303 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 80/145 (55%), Positives = 105/145 (72%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 C NHWMP E+ M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 1 CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK + + + TL Sbjct: 61 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120 Query: 170 SSPSFHYWNKRRRSRILTRSLRFLC 194 + P+F ++L + F C Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFAC 145 >gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus utahensis DSM 12940] gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM 12940] Length = 330 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 A D N++LP+ Y WA E Y + NN+W+P E+PMQDD+A W LTD ER +++ NL Sbjct: 8 AEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQWNGDE-LTDAERQLVEWNL 66 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 GFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG + L+ Sbjct: 67 GFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYLY 126 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSF 174 MY VPSI K + + T+++ P F Sbjct: 127 GMYDRVPSIEEKDQFVVDLTRSIDDPEF 154 >gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] Length = 330 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 74/145 (51%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D N++LPL Y WA + Y + NN+W+P E+PMQDD++ W + L+D ER +I+ NLGFF Sbjct: 11 DPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQWNG-DALSDAERQLIEWNLGFF 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D L+ MY Sbjct: 70 STAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDYLYGMY 129 Query: 150 REVPSITAKANWALQYTQTLSSPSF 174 VPSI K + + T+ + P F Sbjct: 130 DRVPSIAEKDEFVVDLTRAIDRPDF 154 >gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] Length = 330 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 71/149 (47%), Positives = 104/149 (69%), Gaps = 1/149 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +A D N++LP+ Y WA E Y + NN+W+P E+PMQDD++ W + L+D ER +++ N Sbjct: 7 DAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQWNG-DALSDAERQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG + + Sbjct: 66 LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDYM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSF 174 + MY +PSI K + + T+ ++ F Sbjct: 126 YGMYDRIPSIAEKDEFVIDLTRVINQNGF 154 >gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] Length = 330 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 74/154 (48%), Positives = 104/154 (67%), Gaps = 3/154 (1%) Query: 24 MLNARS--DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 ++N S D N++LP+ Y WA E Y + N+W P EVPM DD+ W++ L+ +ER + Sbjct: 3 LINTESHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWENDE-LSSEERQL 61 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG D Sbjct: 62 VEWNLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 L+ MY +P+I AK + + TQ + P F Sbjct: 122 PEYLYGMYDRIPAIEAKDEFVVDLTQVIDDPDFE 155 >gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] Length = 330 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 70/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + D N++LP+ Y WA + Y N+W+P E+PMQ+D+A W + L+D E+ +++ N Sbjct: 7 DTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQWNG-DALSDSEKQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSF 174 + MY VPSI K + + T+ L P F Sbjct: 126 YGMYDRVPSIKEKDEFVVDLTRNLDDPDF 154 >gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium sp. NRC-1] gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium salinarum R1] gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1] gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium salinarum R1] Length = 331 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/149 (48%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +A D N++LP+ Y WA E Y N+W P EV MQ D++ W+ N LTD ER +++ N Sbjct: 7 DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQG-NELTDAERQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSF 174 + MY +PSI K + + T+ + +F Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAF 154 >gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 172 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 VNQ+LP K+ W+ +L + N+W P E+ M D+ WK + L+DDE+L++KR LGFFA Sbjct: 15 VNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWKGDD-LSDDEKLLVKRCLGFFA 73 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T S GL E+F Y+ Sbjct: 74 GSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEAYQ 133 Query: 151 EVPSITAKANWALQYTQTLSSPSF 174 + SI AK ++ + T ++ F Sbjct: 134 NIESIKAKDDFLMGITTDVNRQGF 157 >gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40] gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 368 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G + + V DKR++N +D+NQL P KY WAW+ +++A NHW P ++ M D+ Sbjct: 28 GQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQDV 87 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + K+ LT+ ER M + L + +S+ L NI LA+ ++ PE + Y RQ +EEA Sbjct: 88 --YDYKHNLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEA 145 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 +H+ T+Q+ I +LGLD+GE++N YR VP I AK A Sbjct: 146 LHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMA 182 >gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] Length = 352 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 9/162 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A N+ ++P VNVDDKR++N +DVNQL P KY WAWE +++A NHW P +V Sbjct: 14 IALNSSVAP-------VNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVN 66 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ + + L E+ + + L + +S+ L NI LA+ ++ PE + Y RQ Sbjct: 67 MSQDVHDYHHR--LNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQ 124 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 +EEAVH+ T+Q+ I +L LD+GE++N YR VP I K A Sbjct: 125 VYEEAVHTWTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMA 166 >gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 241 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 2/148 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K VN DDKR++N +DVNQL P KY WAWE +L+A NHW P ++ M D+ + K L Sbjct: 46 KPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHHK--L 103 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T +ER + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ T+Q+ Sbjct: 104 TLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHC 163 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWA 162 I ++GLD+ E++N YR VP I K A Sbjct: 164 IETIGLDQVEIYNRYRVVPEINGKIQIA 191 >gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] Length = 352 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ + + Sbjct: 18 GGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR 77 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ T+ Sbjct: 78 --LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTY 135 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWA 162 Q+ I +L LD+ E++N YR VP I K A Sbjct: 136 QHCIETLNLDQSEIYNRYRVVPEINGKIQLA 166 >gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1] gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1] Length = 337 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K V+DKR++N D+NQL P +Y WAWE +LSA NHW P E+ M DD+ + + L Sbjct: 5 KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ Sbjct: 63 SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122 Query: 135 ITSLGLDEGELFNMYREVPSITAK 158 I SLGLD+ E++N YR VP I AK Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAK 146 >gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] Length = 333 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 2/142 (1%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN DKR++N ++D+NQLLP +Y WAW+ +L A NHW P E+ M D+ + + LT Sbjct: 3 VNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDV--YDYNHTLTT 60 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ I Sbjct: 61 NERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIE 120 Query: 137 SLGLDEGELFNMYREVPSITAK 158 SLGL++ E++N YR VP I K Sbjct: 121 SLGLEQSEIYNRYRVVPEIYGK 142 >gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like, partial [Xenopus (Silurana) tropicalis] Length = 120 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 54/86 (62%), Positives = 70/86 (81%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 35 QRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 94 Query: 74 LTDDERLMIKRNLGFFASSESLVANN 99 LT+DER +++RNLGFF +++SL ANN Sbjct: 95 LTEDERRIVRRNLGFFTTADSLAANN 120 >gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxidans DMS010] gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxydans DMS010] Length = 383 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 93/148 (62%), Gaps = 2/148 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K +N DDKR++N +D+NQL P KY WAW +L+A NHW P ++ M D+ ++ K L Sbjct: 51 KAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDYRHK--L 108 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T +ER + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ Sbjct: 109 TLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 168 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWA 162 I ++GLD+ E++N YR VP I K A Sbjct: 169 IETIGLDQSEIYNRYRVVPEIHQKIKLA 196 >gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] Length = 404 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 2/174 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + T + + G V +DK+++N +D+NQL P KY WAWE +L+A NHW P ++ Sbjct: 59 IPEQTNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDIN 118 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ + K LT +ER + L + +S+ + NI LA+ +S PE + Y RQ Sbjct: 119 MAQDVHDFHHK--LTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQ 176 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +EE++H+ T+Q+ I +LGLD+GE++N YR VP I AK A + ++ P Sbjct: 177 VYEESLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDI 230 >gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium HP15] Length = 352 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 2/178 (1%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ + + LT Sbjct: 23 VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR--LTA 80 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ +Q+ I Sbjct: 81 PEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQHCIE 140 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +L LD+ E++N YR VP+I K A + P + NK + L F Sbjct: 141 TLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDLQEFIMSYLFFAA 198 >gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] Length = 352 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 4 NTGLSPI-QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT P G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M Sbjct: 9 NTQTRPAAHEGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ + + L+ E+ + + L + +S+ L NI LA+ +S PE + Y RQ + Sbjct: 69 QDVHDYHHR--LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 EEA+H+ +Q+ I +L LD+ E++N YR VP+I K A Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQMA 166 >gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC 2396] gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC 2396] Length = 405 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 5/177 (2%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN DDKR++N +D+NQL P KY WAWE +L+A NHW P ++ M D+ + K LT Sbjct: 76 VNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVYDYHHK--LTL 133 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EE++H+ T+Q+ I Sbjct: 134 EEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESLHTWTYQHCIE 193 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++GLD+ E++N YR P+I K + L P N R R + T + ++ Sbjct: 194 TIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDI---NLRNRDDLETFVMAYI 247 >gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] Length = 374 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 103/170 (60%), Gaps = 5/170 (2%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++ L I G KR + D +++ R DV Q +P+KY E++L+A N W+P E+PM Sbjct: 24 SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 +D W + LT+ E + K N+ + +S++LV +N+ AI +H++ E RQY Q Sbjct: 84 EDKLQWNT-GLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142 Query: 123 EEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTL 169 EE+ H ++ +I+ S GLDE G++FN+Y+EVP++T K NW L +T + Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNV 192 >gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 2/137 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 QL PL+Y WA+ N W P E+P+ DD+ W+ + LTDDER ++ LGFF Sbjct: 22 QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWELR--LTDDERRAVELLLGFFNPM 79 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L +D +F +R+V Sbjct: 80 ESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRDV 139 Query: 153 PSITAKANWALQYTQTL 169 P+I AK + + T+ L Sbjct: 140 PAIRAKEAFQQELTRQL 156 >gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 49/83 (59%), Positives = 62/83 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGF 88 ALWK+ GLTDDER ++ RNLGF Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGF 151 >gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] Length = 336 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 2/137 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 QL PL+Y WA+ N W P E+P+ DD+ W+ + LTDDER ++ LGFF Sbjct: 22 QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWELR--LTDDERRAVELLLGFFNPM 79 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L +D +F +R V Sbjct: 80 ESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRNV 139 Query: 153 PSITAKANWALQYTQTL 169 P+I AK + + T+ L Sbjct: 140 PAIRAKEAFQQELTRQL 156 >gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium roseum DSM 5159] gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium roseum DSM 5159] Length = 328 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 3/142 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +L PL + WA+ A +N W P EVP+ DD+ W + L+D+ER ++ LGFF Sbjct: 15 ELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERRAVEMFLGFFNPM 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 ESLV N++L++YR ++ PE R YL RQA+EEA H F+Y+I +L LD +F ++ E Sbjct: 73 ESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPLDRERVFGLHVEH 132 Query: 153 PSITAKANWALQYT-QTLSSPS 173 P++ AK + Q Q L +P Sbjct: 133 PAVAAKELFQRQLAEQWLVTPD 154 >gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 362 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 22 KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N R + LLPLKY WA++ Y + NHW P ++PM D+ W+ +TD ER Sbjct: 26 KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I+ +G+F+++E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG+ Sbjct: 86 IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTL 169 + E M+ ++P+I K + ++ ++ L Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQL 174 >gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] Length = 332 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 87/150 (58%), Gaps = 3/150 (2%) Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D R+ S + +L PL + WA+ +N W P EVP+ +D+ W K LT++ER Sbjct: 4 DHRLFGPPSLEAIELFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHEK--LTEEER 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 LGFF ESLV N+VLAI+ ++ PE R YL RQ +EEA H+ F+Y++ +L Sbjct: 62 HAASLLLGFFNPMESLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLP 121 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTL 169 +D ++F +REVP++ AK + TQ L Sbjct: 122 VDREKVFAAHREVPAVRAKEAFQTALTQAL 151 >gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] Length = 361 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 22 KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+++N R + LLPLKY WA+E Y + NHW P ++ M D+ WK +++ ER Sbjct: 26 KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I +G+F+++E +V +NI+ I ++ PE + L R A EE VH+ + Y+I+SLG+ Sbjct: 86 IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTL 169 + E M+ ++P+I K + + + L Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHAL 174 >gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] Length = 360 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 86/136 (63%), Gaps = 1/136 (0%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LPLKY WA++ Y + NNHW P ++PMQ D+ LW+S + L+D ER +IK +G+F+++E Sbjct: 39 ILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWIIKMAIGYFSAAE 97 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V +NI ++ PE + L R A EE +H+ + Y+I+SLG++ E M+ ++ Sbjct: 98 GIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINPHECEAMFEDID 157 Query: 154 SITAKANWALQYTQTL 169 +I K + + ++ L Sbjct: 158 TIERKTAFVVNNSRGL 173 >gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] Length = 364 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 89/148 (60%), Gaps = 1/148 (0%) Query: 23 RMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++ R + LLPL+YGWA+E Y + NHW P +V M D+ W+ + L++ +R + Sbjct: 30 RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ +G+F+++E +V +NI+ + ++ E + L R A EE +H+ + Y+I+SLG+D Sbjct: 90 VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149 Query: 142 EGELFNMYREVPSITAKANWALQYTQTL 169 E M+ ++P+I AK + +Q L Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQAL 177 >gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium spinosum DSM 4136] Length = 361 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 84/138 (60%), Gaps = 1/138 (0%) Query: 22 KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N R + LLPLKY WA++ Y NHW P ++ MQ D+ W+S + + + ER Sbjct: 26 KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I +G+F+++E +V +NI + ++ PE + L R A EE +H+ + Y+I+SLG+ Sbjct: 86 IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAK 158 + E M+ ++P+I K Sbjct: 146 NPHECEAMFEDIPTIVKK 163 >gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 243 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 58/85 (68%) Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++ Sbjct: 1 NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60 Query: 170 SSPSFHYWNKRRRSRILTRSLRFLC 194 S P F +L + + C Sbjct: 61 SDPKFETGTVDTDKELLRNLIAYYC 85 >gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta [Kitasatospora setae KM-6054] Length = 339 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 12/157 (7%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D K+ML L P++Y +++Y A N W EV + D+A L++ ER Sbjct: 5 DRKKMLLDPGFELTLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGER 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH Q+ +T L Sbjct: 62 HMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLD 118 Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLS 170 D F +PSI KA + +Y + Sbjct: 119 TYLPDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAVD 155 >gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM 20547] gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM 20547] Length = 365 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 5/156 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E + A N W E+ + DLA N L+ ER ++ R + FFA+ + Sbjct: 44 LRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLA--DLHNKLSPAERHLVSRLVAFFATGD 101 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 ++VANN+VL +Y H+++PE R YL RQ FEEAVH + ++ + DE E F + V Sbjct: 102 TIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAVE 161 Query: 153 --PSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 PSI KA + + ++ + ++RR +L Sbjct: 162 NIPSIRTKAEFCFTWIDSIENLGQLETKEQRRQFLL 197 >gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 15998] gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 11379] gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] Length = 338 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 13/159 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +DK +L+ ++ L P++Y +E+Y A N W EV + D+A L+ Sbjct: 3 TTEDKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPG 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTL 115 Query: 138 LGL------DEGELFNMYREVPSITAKANWALQYTQTLS 170 L D F+ E+PSI KA + ++ ++ Sbjct: 116 LDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVE 154 >gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] Length = 338 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 13/154 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + D K +L+ ++ L P++Y +E+Y A N W EV + D+A LT Sbjct: 3 STDQKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPA 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTL 115 Query: 138 LGL------DEGELFNMYREVPSITAKANWALQY 165 L D F+ E+PSI KA + ++ Sbjct: 116 LDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKW 149 >gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] Length = 348 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 6/139 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E++ +A N W EV + DLA + L+ E ++KR + FFA+ + Sbjct: 28 LRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLADLRK---LSPAEHHLVKRLVAFFATGD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 85 TIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYITDERERAEAFAAIE 144 Query: 151 EVPSITAKANWALQYTQTL 169 +PSI KA++ ++ ++ Sbjct: 145 NIPSIKRKADFCFRWIDSI 163 >gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] Length = 356 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 12/142 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ MI R + FFA+ + Sbjct: 36 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPAEQHMIGRLVAFFATGD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 93 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFD 149 Query: 148 MYREVPSITAKANWALQYTQTL 169 E+PSI KA + ++ ++ Sbjct: 150 AVEEIPSIREKAQFCFKWMDSV 171 >gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella aurantiaca DW4/3-1] gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 336 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 12/152 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LNA ++ L P+ Y +E Y +A N W EV DL +SK +TD ER +I Sbjct: 2 LLNAGMNLT-LRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIH 58 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--- 140 R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H Q+ +T L Sbjct: 59 RLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHV---QFYLTLLDTYVP 115 Query: 141 ---DEGELFNMYREVPSITAKANWALQYTQTL 169 D + F +PSI KA + L++ ++ Sbjct: 116 DPADRAKAFAAIDNIPSIQRKARFCLKWMDSI 147 >gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus xanthus DK 1622] gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus xanthus DK 1622] Length = 349 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 5/156 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y +E Y +A N W EV DL +SK +TD ER +I R + FFA+ + Sbjct: 24 LRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F Sbjct: 82 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPAERAMAFAAVD 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 +PSI KA + +++ ++ RR +L Sbjct: 142 NIPSIQRKAQFCMKWMDSIQGLDTLQTKAHRRQFLL 177 >gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] Length = 324 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W+ Y A W EVP+ D+ W+ K L DDER IK LGFFA S+ Sbjct: 19 FPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDDERHFIKHILGFFAGSDG 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYRE 151 +V N+ ++ PE RQ+ Q F E++HS + +I +L DE ELF+ Sbjct: 77 IVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNELFDAIEN 136 Query: 152 VPSITAKANWALQYTQ 167 +P++ KA WA ++ + Sbjct: 137 IPAVHNKAKWAQKWLE 152 >gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella virus 1] gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to tobacco RR small subunit, corresponds to Swiss-Prot Accession Number P49730 [Paramecium bursaria Chlorella virus 1] Length = 324 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 5/140 (3%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W+ Y A W EVP+ D+ W+ K L DDER IK LGFFA S+ Sbjct: 19 FPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDDERHFIKHILGFFAGSDG 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYRE 151 +V N+ ++ PE RQ+ Q F E++HS + +I +L DE ELF+ Sbjct: 77 IVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNELFDAIEN 136 Query: 152 VPSITAKANWALQYTQTLSS 171 +P++ KA WA ++ + S Sbjct: 137 IPAVHNKAKWAQKWLEPGKS 156 >gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Streptomyces venezuelae ATCC 10712] Length = 338 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 13/157 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+K +L+ ++ L P++Y +E+Y A N W EV + D+A LT E+ Sbjct: 5 DEKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPGEQ 60 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L Sbjct: 61 HMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLD 117 Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLS 170 D F +PSI KA + ++ ++ Sbjct: 118 TYLPDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVE 154 >gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 331 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y +A N W EV + DLA +T +ER +I R + FFA+ + Sbjct: 11 LRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLA---DLARMTPEERHLINRLVAFFATGD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+VANN+VL +Y+H++ PE R YL RQ FEEAVH + ++ + D E F Sbjct: 68 SIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERVKAFAAVE 127 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA + ++ +L Sbjct: 128 HIPSIRNKAEFCFRWIDSLGG 148 >gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] Length = 340 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 12/144 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 77 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPEDRAAAFD 133 Query: 148 MYREVPSITAKANWALQYTQTLSS 171 E+PSI KA + ++ ++ Sbjct: 134 AVEEIPSIREKAQFCFKWMDSVEE 157 >gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] Length = 338 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 13/158 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + ++K +L+ ++ L P++Y +E+Y A N W EV + D+A L+ Sbjct: 3 STEEKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPG 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTL 115 Query: 138 LGL------DEGELFNMYREVPSITAKANWALQYTQTL 169 L D F+ E+PSI KA + ++ ++ Sbjct: 116 LDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFRWMDSV 153 >gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus ATCC 33331] Length = 338 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 12/143 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPEDRAAAFD 131 Query: 148 MYREVPSITAKANWALQYTQTLS 170 E+PSI KA + ++ ++ Sbjct: 132 AVEEIPSIREKAQFCFRWMDSVE 154 >gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] Length = 339 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 12/144 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y +E Y SA N W EV D+ + +TD ER +++R + FFA+ + Sbjct: 19 LRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLRK---MTDAERHLVQRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +YRH++ PE R YL RQ +EEA+H Q+ +T L D F Sbjct: 76 SIVANNLVLNLYRHINAPEARMYLSRQLYEEALH---VQFYLTLLDTYIPDPEDRHRAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLSS 171 +PSI KA++ +++ ++ S Sbjct: 133 AVENIPSIRQKADFCMRWLDSVES 156 >gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] Length = 347 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 22/164 (13%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT ER +I R + FFA+ + Sbjct: 27 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLTPAERHLIGRLVAFFATGD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 84 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPDDRAAAFA 140 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 +PSI KA + ++ ++ R R+ TRS R Sbjct: 141 AVENIPSIREKAEFCFRWMDSVE----------RLDRLETRSDR 174 >gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] Length = 355 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 7/153 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L+ ++ L P++Y +E+Y A N W EV + D+A L++ E+ Sbjct: 23 DQNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGEQH 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 79 MIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLP 138 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLS 170 D + F +PSI KA + ++ ++ Sbjct: 139 DPADRVAAFAAVENIPSIREKAEFCFKWMDSVE 171 >gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] Length = 340 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 12/144 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPEDRTAAFA 133 Query: 148 MYREVPSITAKANWALQYTQTLSS 171 +PSI KA++ ++ ++ S Sbjct: 134 AVENIPSIREKASFCFKWMDSVES 157 >gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] Length = 332 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 79/141 (56%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y ++S EC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 71 LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ K + L+Y + ++ + Sbjct: 131 SMARKEEFELKYIRRMTEQTL 151 >gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] Length = 338 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 13/154 (8%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 R+L+ D+ L P++Y +E++ +A N W EV + DL + TD ER +I Sbjct: 8 RLLDPGMDLT-LRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLAT---FTDSERHLI 63 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH Q+ +T L Sbjct: 64 NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVH---VQFYLTLLDTYL 120 Query: 141 ----DEGELFNMYREVPSITAKANWALQYTQTLS 170 D + F +PSI KA + ++ T+ Sbjct: 121 PDPEDRVKAFAAVEHIPSIKEKAEFCFKWIDTID 154 >gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] Length = 345 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 12/143 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y +A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVA---DLAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D + F Sbjct: 82 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRADAFA 138 Query: 148 MYREVPSITAKANWALQYTQTLS 170 +PSI KA + ++ + Sbjct: 139 AVENIPSIREKAEFCFKWIDEVE 161 >gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] Length = 348 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ K L DDER IK LGFFA S+ Sbjct: 43 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 100 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E LF+ Sbjct: 101 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 160 Query: 152 VPSITAKANWALQY 165 +P++ KA WA ++ Sbjct: 161 IPAVGKKAAWAQKF 174 >gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella virus MT325] Length = 326 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ K L DDER IK LGFFA S+ Sbjct: 21 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 78 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E LF+ Sbjct: 79 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 138 Query: 152 VPSITAKANWALQY 165 +P++ KA WA ++ Sbjct: 139 IPAVGKKAAWAQKF 152 >gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] Length = 324 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W Y A W EVP+ D+A W+ K L +DER IK LGFFA S+ Sbjct: 19 FPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWREK--LNNDERHFIKHILGFFAGSDG 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+ + PE RQ+ Q F E+VHS + +I +L DE E LF+ Sbjct: 77 IVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALISDEQERLDLFDAIET 136 Query: 152 VPSITAKANWA 162 +P++ KA WA Sbjct: 137 IPAVHNKAKWA 147 >gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] Length = 350 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 13/171 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A ++ GE+ + +D L R P++Y ++++ A N W EV + Sbjct: 5 AETRTVTAATTGERHMLLDPGMDLTLR-------PMRYPHFFDRFKEAIKNTWTVEEVDL 57 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA L+ ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ Sbjct: 58 HSDLA---DLAKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQL 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREV---PSITAKANWALQYTQTL 169 FEEAVH + ++ + DE E F + V PSI KA + ++ ++ Sbjct: 115 FEEAVHVQFYLNLLDTYVPDEKERFAAFAAVENIPSIARKAEFCFRWIDSI 165 >gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5] gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5] Length = 342 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 6/139 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ ER ++ R + FFA+ + Sbjct: 22 LRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLA---DLAKLSPAERHLVSRLVAFFATGD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F + V Sbjct: 79 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKERFAAFDAVE 138 Query: 153 --PSITAKANWALQYTQTL 169 PSI KA + ++ ++ Sbjct: 139 NIPSIARKAEFCFRWIDSI 157 >gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. sepedonicus] gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 331 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 3/140 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA + Y A N W P E+ + +D+A +K +TD+ER I + +F +E Sbjct: 15 LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAITFLMSYFNPNE 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 72 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131 Query: 154 SITAKANWALQYTQTLSSPS 173 S+ K + +++ + ++ + Sbjct: 132 SMARKEEFEVKFIKRMTEQT 151 >gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces albus J1074] gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] Length = 350 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 12/143 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 30 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHLIGRLVAFFATGD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D + F Sbjct: 87 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPADRADAFA 143 Query: 148 MYREVPSITAKANWALQYTQTLS 170 +PSI KA + ++ ++ Sbjct: 144 AVENIPSIREKAEFCFRWMDSVD 166 >gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] Length = 331 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + DL + L+ ER ++ R + FFA+ + Sbjct: 11 LRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLT---DLDRLSAAERHLVSRLVAFFATGD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 68 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERTEAFAAVE 127 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA + ++ +L + Sbjct: 128 NIPSIRRKAEFCFRWIDSLGN 148 >gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus] Length = 374 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 7/143 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY W Y A + W EV + D+A W+ +TD+ER I R L FFA+S+ Sbjct: 62 IFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWEK---MTDNERFFISRVLAFFAASD 118 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + +I + DE E LFN Sbjct: 119 GIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYIRDEKERNILFNAIF 178 Query: 151 EVPSITAKANWALQYT-QTLSSP 172 EVP I KA WA++ QT+++P Sbjct: 179 EVPCIAKKAEWAVKMGLQTITAP 201 >gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei str. Twist] gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei TW08/27] gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma whipplei TW08/27] gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str. Twist] Length = 327 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 80/140 (57%), Gaps = 3/140 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y WA + Y A N W P E+ + +D+A +K +T +E+ + + +F +E Sbjct: 14 LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFKK---MTHEEKHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D E ++ + EVP Sbjct: 71 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130 Query: 154 SITAKANWALQYTQTLSSPS 173 S+ K + ++Y + ++ + Sbjct: 131 SMARKEEFEVEYIRRMTEET 150 >gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] Length = 336 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 11/143 (7%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY +E Y + N W EV DL SK +T+ E+ +I+R + FFA+ + Sbjct: 15 LRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSK--MTESEKHLIRRLVAFFATGD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-----GLDE-GELFN 147 S+V NN+VL +Y+H+++PE R YL RQ +EEA+H Q+ +T L DE E F Sbjct: 73 SIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHV---QFYLTLLDNYIPNPDERAEAFA 129 Query: 148 MYREVPSITAKANWALQYTQTLS 170 +PSI KA++ ++ +++ Sbjct: 130 AVENIPSIKKKADFCYKWIDSIN 152 >gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG] gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF] Length = 345 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 12/142 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVS---DLAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 138 Query: 148 MYREVPSITAKANWALQYTQTL 169 +PSI AKA + ++ + Sbjct: 139 AVENIPSIRAKAEFCFKWIDEV 160 >gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] Length = 345 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 12/138 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVS---DLAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 138 Query: 148 MYREVPSITAKANWALQY 165 +PSI AKA + ++ Sbjct: 139 AVENIPSIRAKAEFCFKW 156 >gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] Length = 339 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 12/143 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLTPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPDDRAAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLS 170 +PSI KA + + ++ Sbjct: 133 AVENIPSIREKAEFCFTWMDSVE 155 >gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 341 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 12/143 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ +E+ +I R + FFA+ + Sbjct: 21 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPEEQHLIGRLVAFFATGD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPDDRAAAFA 134 Query: 148 MYREVPSITAKANWALQYTQTLS 170 +PSI KA + ++ ++ Sbjct: 135 AVENIPSIREKAEFCFRWMDSVE 157 >gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces lividans TK24] gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] Length = 343 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 12/144 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPMEQHLIGRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFA 136 Query: 148 MYREVPSITAKANWALQYTQTLSS 171 +PSI KA + ++ ++ S Sbjct: 137 AVENIPSIREKAEFCFRWMDSVES 160 >gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces coelicolor A3(2)] gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] Length = 343 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 12/144 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPMEQHLIGRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFA 136 Query: 148 MYREVPSITAKANWALQYTQTLSS 171 +PSI KA + ++ ++ S Sbjct: 137 AVENIPSIREKAEFCFRWMDSVES 160 >gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] Length = 344 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 6/139 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ ER ++ R + FFA+ + Sbjct: 24 LRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLA---DLARLSPAERHLVSRLVAFFATGD 80 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---R 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F + Sbjct: 81 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDERERFAAFAAIE 140 Query: 151 EVPSITAKANWALQYTQTL 169 +PSI KA + ++ ++ Sbjct: 141 NIPSIRRKAEFCFRWIDSI 159 >gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] Length = 338 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 12/138 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPAEQHLIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPEDRTAAFA 131 Query: 148 MYREVPSITAKANWALQY 165 +PSI KA + ++ Sbjct: 132 AVENIPSIREKAEFCFKW 149 >gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces hygroscopicus ATCC 53653] gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces himastatinicus ATCC 53653] Length = 343 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 12/142 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 23 LRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMISRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 80 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAASFA 136 Query: 148 MYREVPSITAKANWALQYTQTL 169 +PSI KA + ++ ++ Sbjct: 137 AVENIPSIREKAEFCFRWMDSV 158 >gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] Length = 356 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y + +Y A N W EV DL + G ER +I+R + FFA+ + Sbjct: 35 LRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMGPA--ERHLIQRLVAFFATGD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+VANN+VL++YRHL+ PE R YL RQ +EEA+H + ++ + D + F Sbjct: 93 SIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPDQRHAAFAAVE 152 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA + L++ T+++ Sbjct: 153 TIPSIRRKAEFCLRWQDTVAA 173 >gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] Length = 341 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 12/142 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 21 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPEDRTAAFA 134 Query: 148 MYREVPSITAKANWALQYTQTL 169 +PSI KA++ ++ ++ Sbjct: 135 AVENIPSIREKASFCFKWMDSV 156 >gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces ghanaensis ATCC 14672] Length = 339 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 12/142 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPDDRAAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTL 169 +PSI KA + + ++ Sbjct: 133 AVENIPSIREKAEFCFTWMDSV 154 >gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces jumonjinensis] Length = 322 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 12/143 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ LT E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVT---DLAKLTPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPEDRTAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLS 170 +PSI KA + ++ ++ Sbjct: 133 AVENIPSIREKAQFCFKWMDSVE 155 >gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] Length = 340 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 12/142 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPDDRAAAFA 133 Query: 148 MYREVPSITAKANWALQYTQTL 169 +PSI KA + + ++ Sbjct: 134 AVENIPSIREKAEFCFTWMDSV 155 >gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis BCW-1] Length = 340 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 12/143 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPDDRAAAFA 133 Query: 148 MYREVPSITAKANWALQYTQTLS 170 +PSI KA + ++ ++ Sbjct: 134 AVENIPSIREKAEFCFRWIDSVD 156 >gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] Length = 340 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 12/138 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVT---DLAKLSPAEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDTYLPDPQDRAAAFD 133 Query: 148 MYREVPSITAKANWALQY 165 +PSI KA + ++ Sbjct: 134 AVENIPSIREKAEFCFRW 151 >gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] Length = 350 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 6/139 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DL L+ ER ++ R + FFA+ + Sbjct: 30 LRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLG---DLAKLSSAERHLVSRLVAFFATGD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + +E E F + V Sbjct: 87 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEKERFAAFAAVE 146 Query: 153 --PSITAKANWALQYTQTL 169 PSI KA + ++ ++ Sbjct: 147 NIPSIARKAEFCFRWIDSI 165 >gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] Length = 342 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 6/139 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ E+ ++ R + FFA+ + Sbjct: 22 LRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLA---DLAKLSPAEQHLVSRLVAFFATGD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 79 TIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKQRYEAFAAVE 138 Query: 151 EVPSITAKANWALQYTQTL 169 +PSI KA + ++ ++ Sbjct: 139 NIPSIARKAEFCFKWIDSI 157 >gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera kw1407] Length = 378 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 10/166 (6%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NNT +S I+A E ++ +L + L P+KY W+ Y + W E+ + Sbjct: 47 NNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDLS 101 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DDER + L FFA+S+ +V N+V + PE R + Q Sbjct: 102 KDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIM 159 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E VHS T+ +I + D + LFN +P I KA+WAL++ Sbjct: 160 MENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKW 205 >gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli subsp. xyli str. CTCB07] Length = 329 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 80/140 (57%), Gaps = 3/140 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ E YL +Q +EEA H +F+Y++ + +D + +N + +VP Sbjct: 71 LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130 Query: 154 SITAKANWALQYTQTLSSPS 173 S+ +K + +++ + ++ + Sbjct: 131 SMASKEEFEVRFIKRMTEQA 150 >gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] Length = 328 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+++ WE Y + + W E+ + DL WK K LTDDER IK Sbjct: 7 ILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWKGK--LTDDERYFIK 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEV 124 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 E LFN P+I KA+WAL++ + SPSF Sbjct: 125 EKDKLFNALENFPAIKKKADWALKW---IDSPSF 155 >gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain [Streptomyces clavuligerus ATCC 27064] gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] Length = 339 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 12/142 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---PDLAKLSPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRNAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTL 169 +PSI KA + ++ ++ Sbjct: 133 AVENIPSIREKAQFCFRWMDSV 154 >gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] Length = 419 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ WK N +TD+ER I R L FFA+S+ Sbjct: 106 LFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMTDNERFFISRVLAFFAASD 163 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I S D E LFN Sbjct: 164 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPKEADFLFNAIE 223 Query: 151 EVPSITAKANWALQY 165 +P I KA WAL++ Sbjct: 224 NIPCIKKKAEWALRW 238 >gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] Length = 339 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 5/158 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ Y +A N W E+ Q D+ SK ++ ER +I R + FFA+ + Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERHLIHRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F+ Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 + SI KA++ ++ ++ S + ++RR +L + Sbjct: 136 NIDSIKKKADFCFKWIDSIQSLTRIETREQRRQFLLNQ 173 >gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] Length = 346 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 11/142 (7%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ + N W EV Q DL K + LT E I+R + FFA+ + Sbjct: 25 LRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATGD 82 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGE----LFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L + E E F Sbjct: 83 SIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLDNYIPEPEERNAAFA 139 Query: 148 MYREVPSITAKANWALQYTQTL 169 +PSI+ KA++ +++ ++ Sbjct: 140 AVENIPSISKKADFCMKWMDSI 161 >gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] Length = 340 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 17/181 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D K +L+ ++ L P++Y +++Y A N W EV + D+ L+ E+ Sbjct: 7 DTKNLLDPGFELT-LRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVT---DLAKLSPGEQ 62 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 +I R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L Sbjct: 63 HLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHV---QFYLTLLD 119 Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D F +PSI KA + ++ ++ K+ R R L L + Sbjct: 120 TYLPDPDDRAAAFAAVENIPSIREKAEFCFRWMDSVEKID-RLETKQDRRRFL---LNLI 175 Query: 194 C 194 C Sbjct: 176 C 176 >gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299] gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299] Length = 335 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 6/148 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ D + P+KYG WE Y A + W EV + DD+ W N L +DE+ IK Sbjct: 17 LLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW---NKLNNDEKHFIK 73 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + + PE R + Q E +HS + +I + D Sbjct: 74 HILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSEMYSLLIDAYVKDAQ 133 Query: 144 E---LFNMYREVPSITAKANWALQYTQT 168 E LF + +P I KA+WA ++ ++ Sbjct: 134 EKTYLFQAIQNIPCIAKKADWAFKWIES 161 >gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] Length = 326 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+K+ WE Y + + W E+ + DL W +K L DDER IK Sbjct: 8 ILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTTK--LNDDERYFIK 65 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 66 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEA 125 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 E LF P+I KA+WALQ+ + SPSF Sbjct: 126 EKDKLFKAIENFPAIKKKADWALQW---IESPSF 156 >gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain [Streptomyces microflavus] Length = 321 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D E + V Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPAERAAAFAAVE 134 Query: 153 --PSITAKANWALQYTQTLS 170 PSI KA + ++ ++ Sbjct: 135 NIPSIRDKAQFCFKWMDSVE 154 >gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens] Length = 325 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y A + W EV + DL W++ LTD+ER I L FFA+S+ Sbjct: 16 MFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWEA---LTDNERHFISHVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D+ E LFN Sbjct: 73 GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDQSEKHRLFNAIE 132 Query: 151 EVPSITAKANWALQYTQTLSSPSF 174 +P +T KA WAL++ SS SF Sbjct: 133 TIPCVTRKAEWALKWID--SSGSF 154 >gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 399 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+S+V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4] Length = 327 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+++ WE Y + + W E+ + DL W SK LTDDER IK Sbjct: 8 ILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSSK--LTDDERYFIK 65 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 66 HVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 E LFN P+I KA WAL++ + SPSF Sbjct: 126 EKAMLFNAIETFPAIKKKAEWALKW---IESPSF 156 >gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] Length = 339 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 80/141 (56%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ Y +A N W E+ Q D++ SK ++ ER +I R + FFA+ + Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHSK--MSPGERHLIHRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPDERVKAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSS 171 + SI KA++ ++ ++ + Sbjct: 136 NIDSIKKKADFCFKWIDSIQN 156 >gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] Length = 323 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N++++ +L D LLP+ Y WEKY + W E+ + D+ W N L D Sbjct: 1 MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 58 GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQ 167 + D E LF+ VP++T KA WAL++ + Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIE 151 >gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens] Length = 331 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y A + W EV + D W++ LTDDER I L FFA+S+ Sbjct: 20 MFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDERHFISHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D+ E LFN Sbjct: 77 GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDQAEKSRLFNAIE 136 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA+WAL++ + S Sbjct: 137 TIPCVARKADWALKWIDSAGS 157 >gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980] gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980 UF-70] Length = 407 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ P +A E + + R + L P+KY W+ Y A + W E+ + DL Sbjct: 63 GIKPEEADEPLLQENPNRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDL 114 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 115 HDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMEN 172 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +HS T+ +I + ++ + LFN +P I KA+WA+++ Q +S Sbjct: 173 IHSETYSLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQDKNS 221 >gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] Length = 417 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L D+ER I R L FFA+S+ Sbjct: 103 LFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN--NRLNDNERFFISRILAFFAASD 160 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I S D E LFN Sbjct: 161 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPKEADFLFNAID 220 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 221 NIPCIRKKADWALRW 235 >gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora] Length = 410 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L P +A E + + +R + L P+KY W+ Y A + W E+ + DL Sbjct: 70 LKPEEAAEPLLTENPQRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLH 121 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N LTDDER + L FFA+S+ +V N+V + PE R + Q E + Sbjct: 122 DWN--NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENI 179 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 HS T+ +I + + + LFN +P I KA+WAL++ SS Sbjct: 180 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSS 227 >gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] Length = 252 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y A + W EV + DL W N L D+ER + R L FFA+S+ Sbjct: 102 MFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWN--NKLNDNERYFVSRVLAFFAASD 159 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + +PE + + Q E +HS + +I + D E LFN Sbjct: 160 GIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVKDPQEADFLFNAIE 219 Query: 151 EVPSITAKANWALQYTQ 167 +P IT KA WA+++ Q Sbjct: 220 NIPCITKKAEWAIKWIQ 236 >gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB] Length = 229 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796] Length = 306 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3] Length = 306 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] Length = 325 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y ++ Y A W EV + D+ W+ K L DDER IK LGFFA S+ Sbjct: 20 FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWREK--LNDDERHFIKHILGFFAGSDG 77 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+ +++P R + Q + E+VHS + ++ +L DE E LF Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137 Query: 152 VPSITAKANWALQY 165 +P++ KA WA +Y Sbjct: 138 IPAVGKKAAWASKY 151 >gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c] gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1; AltName: Full=Ribonucleotide reductase R2 subunit 1; AltName: Full=Ribonucleotide reductase small subunit 1 gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces cerevisiae] gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae] gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c] Length = 399 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118] Length = 399 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789] gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a] gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291] Length = 399 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23] Length = 399 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] Length = 357 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA E Y A N W P E+ + +DLA ++ ++D+ER + + +F +E Sbjct: 45 LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFER---MSDEERHALTFLMSYFNPNE 101 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H +F+Y++ + +D + + VP Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ AK + +++ + ++ + Sbjct: 162 SMAAKEEFEIRFIRRMTEQTL 182 >gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 98 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 155 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 156 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 215 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 216 ESEFLFNAIHTIPEIGEKAEWALRWIQ 242 >gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO] Length = 399 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium dendrobatidis JAM81] Length = 336 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 5/160 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P++ + V ++ +L + L P+KY W Y A + W EV + D W Sbjct: 2 PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + + LTDDER I R L FFA+S+ +V N+V + + PE R + Q E +HS Sbjct: 62 EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119 Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + +I + D E LF+ VP I KA+WAL++ Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRW 159 >gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] Length = 407 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ P +A E + + R + L P+KY W+ Y A + W E+ + DL Sbjct: 63 GIKPEEADEPLLQENPNRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDL 114 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W + L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 115 HDWNER--LNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMEN 172 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +HS T+ +I + ++ + LFN +P I KA+WA+++ Q +S Sbjct: 173 IHSETYSLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQDKNS 221 >gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138] gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata] Length = 400 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 5/148 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +LN D L P+KY W+ Y A + W E+ + DL W N L ++ER Sbjct: 75 DEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRLNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P I KA WAL++ Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRW 220 >gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] Length = 339 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ Y +A N W E+ Q D+ SK ++ ER +I R + FFA+ + Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERHLIHRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERVKAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSS 171 + SI KA++ ++ ++ Sbjct: 136 NIDSIKKKADFCFKWIDSIQD 156 >gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens] Length = 330 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y A + W EV + D W++ LTD+ER I L FFA+S+ Sbjct: 19 MFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWEA---LTDNERHFISHVLAFFAASD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D E LFN Sbjct: 76 GIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDHAEKNRLFNAIE 135 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P +T KA WAL++ + S Sbjct: 136 TIPCVTKKAEWALKWIHSAGS 156 >gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 410 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A++ + P A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 52 ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W + L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E VHS T+ +I + D + LFN +P I KA+WAL++ Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRW 216 >gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545] Length = 338 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 8/151 (5%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 A S+ + P+KYG WE Y A + W EV + DD+ W+ L+DDE+ I L Sbjct: 20 AGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWEK---LSDDEKHFISHIL 76 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144 FFA+S+ +V N+ + + PE R + Q E +HS + +I + D + Sbjct: 77 AFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIKDAAQKK 136 Query: 145 -LFNMYREVPSITAKANWALQYTQTLSSPSF 174 LF +P + KA+WAL++ + SS +F Sbjct: 137 YLFEAMENIPCVAKKADWALKWIE--SSATF 165 >gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila] gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila SB210] Length = 376 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 12/166 (7%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N+ G +P + E D+ +L + L P+KY WE Y + W E+ + Sbjct: 45 NDEGKAPKEGYE------DEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWTADEIDLY 98 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LTD+ER IK L FFA+S+ +V N+ + PE R + Q Sbjct: 99 QDLKDWER---LTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARAFYGFQIA 155 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E +HS T+ +I + DE E LF + VP I KA WAL++ Sbjct: 156 MENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKW 201 >gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis] Length = 401 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WE Y A + W E+ + DL W N + ++ER I R L FFA+S+ Sbjct: 88 LFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERFFISRILAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 146 GIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAIE 205 Query: 151 EVPSITAKANWALQYTQ 167 +P I KA WA+++ Q Sbjct: 206 TIPQIKEKAEWAIRWIQ 222 >gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata obscuriglobus UQM 2246] Length = 332 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E Y A N W EV DLA + + +T ER +I R + FFA+ + Sbjct: 11 LRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLRGR--VTPAERHLIHRLVAFFATGD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 S+V NN+VL +Y+H++ PE R YL RQ +EEA+H + ++ + D + V Sbjct: 69 SIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAVD 128 Query: 153 --PSITAKANWALQYTQTLSS 171 PSI KA++ ++ ++ Sbjct: 129 NIPSIKLKADFCFKWIDSIEG 149 >gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase small subunit gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum] gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] Length = 338 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W Y A +HW+ E+ + +D W+ K LTD+ER I Sbjct: 14 ILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYK--LTDNERHFIS 71 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 72 HVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDKQ 131 Query: 142 -EGELFNMYREVPSITAKANWALQY 165 + +LFN +P I KA WAL++ Sbjct: 132 TKDKLFNAIETIPCIKKKAEWALRW 156 >gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA2] gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL044PA1] gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA3] gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium sp. P08] Length = 324 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P EV + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ K + +++ + ++ + Sbjct: 130 SMARKEAFEVEFIKRVTEQTL 150 >gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] Length = 400 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + +L+ D + P+KY WE Y A + W EV + DD+ W+ L+D ER Sbjct: 78 DPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHWEK---LSDGER 134 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 135 HFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLLLETYI 194 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E LF+ VP I KA WA+++ + SS Sbjct: 195 KDPIEKHKLFHSIETVPCIKKKAQWAIKWIGSESS 229 >gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] Length = 325 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 9/142 (6%) Query: 34 LLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K + AC W E+ + DL W SK L DDER IK L FFA+ Sbjct: 17 IFPIQHNDIWEWYKKMEAC--FWTAEEIDLHQDLTDWNSK--LNDDERYFIKHILAFFAA 72 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ +V N+ + E + + Q E +HS T+ +I + DE E ++R Sbjct: 73 SDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEKDQLFRA 132 Query: 152 V---PSITAKANWALQYTQTLS 170 + P+I KA+WAL++ ++ S Sbjct: 133 IEVFPAIKKKADWALKWIESDS 154 >gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] Length = 390 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 2/150 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + R + KR++N RS +LPLKY A+ Y NHW P + M D W Sbjct: 43 LDKAKARARLAGKRVINGLRSAELNVLPLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQW 102 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+ ER +I+ +G+F+++E +V ++++ I +L+ E + LR EE++H Sbjct: 103 NT-GALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIHM 161 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAK 158 + +II SL +D E+ + ++PS+ K Sbjct: 162 DSLLHIIGSLNIDLDEVTAKFSDIPSVQRK 191 >gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii] gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii] Length = 412 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K +++ ER I R L FFA+S+ Sbjct: 101 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWNNK--MSEGERYFISRVLAFFAASD 158 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 159 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYSRDTEESEFLFNAIE 218 Query: 151 EVPSITAKANWALQYTQ 167 +P I KA WA+++ Q Sbjct: 219 NIPPIKEKAEWAIRWIQ 235 >gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+] gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+] Length = 409 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + A E + + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 61 IKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLSKDLH 120 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W +K L DDE+ I L FFA+S+ +V N+V + PE R + Q E + Sbjct: 121 DWSNK--LNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMENI 178 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 HS T+ +I + + + LFN +P I KA+WAL++ Sbjct: 179 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRW 220 >gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276] gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus gattii WM276] Length = 430 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ DL W + +T+ ER I R L FFA+S+ Sbjct: 112 LFPIKYNEIWQAYKRAQASFWTAEELDFGHDLIDWHDR--MTEQERFFILRILAFFAASD 169 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NIV + E R + Q+ E VHS T+ +I + D E LF Sbjct: 170 GIVGENIVSQFSLEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQEKDFLFRGME 229 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL+Y Sbjct: 230 NIPCIKQKADWALKY 244 >gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans var. neoformans JEC21] gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 430 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ DL W + +T+ ER I R L FFA+S+ Sbjct: 112 LFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWHDR--MTEQERFFILRILAFFAASD 169 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NIV + E R + Q+ E VHS T+ +I + D E LF Sbjct: 170 GIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQEKDFLFRGMT 229 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL+Y Sbjct: 230 NIPCIKQKADWALKY 244 >gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895] gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895] Length = 422 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N +T++ER I R L FFA+S+ Sbjct: 109 LFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMTENERFFISRVLAFFAASD 166 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 167 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADHLFNAIE 226 Query: 151 EVPSITAKANWALQYTQ 167 +P I KA WA+++ Q Sbjct: 227 TIPEIKEKAEWAIRWIQ 243 >gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] Length = 340 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 79/139 (56%), Gaps = 5/139 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ + N W EV Q DL K + L+ E +I+R + FFA+ + Sbjct: 19 LRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH + ++ + D F Sbjct: 77 SIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAVE 136 Query: 151 EVPSITAKANWALQYTQTL 169 +PSI+ KA++ +++ ++ Sbjct: 137 NIPSISKKADFCMKWMDSI 155 >gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] Length = 328 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+K+ W+ Y + W E+ + DL WK+K L DDER IK Sbjct: 8 ILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWKNK--LNDDERYFIK 65 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 66 HILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 E LF+ P+I KA+WAL++ + SPSF Sbjct: 126 EKDILFHALENFPAIRKKADWALKWIE---SPSF 156 >gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA1] gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL092PA1] Length = 328 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ K + + + + ++ + Sbjct: 130 SMARKEAFEVAFIKRMTEQTL 150 >gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA1] gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA3] Length = 328 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ K + + + + ++ + Sbjct: 130 SMARKEAFEVAFIKRMTEQTL 150 >gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium acnes KPA171202] gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium acnes KPA171202] gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL074PA1] gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA2] gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA1] gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA1] gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA2] gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA1] gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA2] gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA1] gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL007PA1] gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL056PA1] gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL001PA1] gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA3] gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA2] gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA2] gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA1] gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL045PA1] gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA2] gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA3] gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA1] gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA2] gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA3] gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL078PA1] gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA2] gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA3] gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA1] gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA4] gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL060PA1] gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL038PA1] gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA2] gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA1] gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA3] gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA2] gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL097PA1] gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA2] gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA1] gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA2] gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL020PA1] gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL099PA1] Length = 328 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ K + + + + ++ + Sbjct: 130 SMARKEAFEVAFIKRMTEQTL 150 >gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL103PA1] Length = 328 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ K + + + + ++ + Sbjct: 130 SMARKEAFEVAFIKRMTEQTL 150 >gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA1] gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA2] gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA1] gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA2] gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL086PA1] gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA4] gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL067PA1] gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA1] gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA1] gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA1] gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA1] gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA2] gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA2] gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA1] gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA2] gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA3] gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA2] gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA1] gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA2] Length = 328 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSF 174 S+ K + + + + ++ + Sbjct: 130 SMARKEAFEVAFIKRMTEQTL 150 >gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio] Length = 349 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 E VHS + +I + D E LFN + +P + KA+WALQ+ +S Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWISDTNS 179 >gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans] gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans] Length = 403 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N + ++ER I R + FFA+S+ Sbjct: 90 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERFFISRVIAFFAASD 147 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + +PE + + Q E +HS T+ +I + D E LFN Sbjct: 148 GIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESDFLFNAIE 207 Query: 151 EVPSITAKANWALQYTQ 167 +P I KA WA+++ Q Sbjct: 208 TIPQIKEKAEWAIRWIQ 224 >gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio] gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B (TP53 inducible) (RRM2B) [Danio rerio] Length = 349 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 E VHS + +I + D E LFN + +P + KA+WALQ+ +S Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWISDTNS 179 >gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] Length = 343 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 12/170 (7%) Query: 7 LSPIQAGEKRVNV------DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 LS I K+VN +++ +L D +LP+ Y WE Y + W E+ Sbjct: 4 LSAINTKYKKVNTVTRMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEID 63 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD+ W N L D ER I L FFA+S+ +V N+ + + PE R + Q Sbjct: 64 LSDDMKDW---NNLNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQ 167 E +HS T+ +I + D E LF+ VP + K WAL++ + Sbjct: 121 IMMENIHSETYALLIDTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIE 170 >gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] Length = 394 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L+ D + P+KY WE Y A + W EV + DD+ W+ L+D ER Sbjct: 73 EEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLGDDMKHWEK---LSDGERH 129 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ S Sbjct: 130 FISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLLLESYIK 189 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLS 170 D E LF+ VP I KA WA+++ + S Sbjct: 190 DPQEKHKLFHSIETVPCIKKKAQWAMKWIGSDS 222 >gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] Length = 422 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W E+ + D+ WK+K L ++ER I R L FFA+S+ Sbjct: 111 MFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWKNK--LNENERFFISRILAFFAASD 168 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 169 GIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAID 228 Query: 151 EVPSITAKANWALQY 165 +P I KA+WA+++ Sbjct: 229 NIPQIKKKADWAIRW 243 >gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] Length = 328 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ + DL+ W +K L+DDE+ Sbjct: 8 ILKENKDRFVIFPIQHHDLWEWYKKCEAC--FWTAEEIDLHQDLSDWNNK--LSDDEKYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 E E LF P+I KA+WAL++ + SPSF Sbjct: 124 EKEKNVLFQAIENFPAIKKKADWALKW---IESPSF 156 >gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa] gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] Length = 410 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L P +A E + + +R + L P+KY W+ Y A + W E+ + DL Sbjct: 70 LKPEEANEPLLTENPQRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLH 121 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DDE+ I L FFA+S+ +V N+V + PE R + Q E + Sbjct: 122 DWN--NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENI 179 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 HS T+ +I + + + LFN +P I KA+WAL++ SS Sbjct: 180 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSS 227 >gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica] gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica] Length = 403 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + D+ W+ N L +DER I L FFA+S+ Sbjct: 89 LFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLNNDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 147 GIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKERTYLFNAIE 206 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 207 TIPCIKKKADWALKW 221 >gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides posadasii str. Silveira] Length = 408 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W + L DDER I R L FFA+S+ Sbjct: 89 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 147 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 206 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 207 TIPCIRKKADWAIRWIQDQES 227 >gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS] Length = 408 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W + L DDER I R L FFA+S+ Sbjct: 89 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 147 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 206 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 207 TIPCIRKKADWAIRWIQDQES 227 >gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] Length = 325 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 5/140 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y S + W E+ + DL W +K L++DER +K L FFA+S+ Sbjct: 17 IFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWNNK--LSNDERYFVKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 +V N+ + E + + Q E +HS T+ +I + DE ELFN Sbjct: 75 GIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEKDELFNALE 134 Query: 151 EVPSITAKANWALQYTQTLS 170 P+I KA+WALQ+ ++ S Sbjct: 135 VFPAIKKKADWALQWIESDS 154 >gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis] gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis] Length = 384 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 56 AKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 113 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS + Sbjct: 114 -LNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYS 172 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 +I SL D+ E LFN +P + KA+WAL Sbjct: 173 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWAL 206 >gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis] gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis] Length = 341 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 13 AKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 70 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS + Sbjct: 71 -LNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEMYS 129 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 +I SL D+ E LFN +P + KA+WAL Sbjct: 130 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWAL 163 >gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR] gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H143] gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H88] Length = 413 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG+ ++A E + + R + L PLKY W+ Y A + W E+ + D Sbjct: 70 TGVKALEADEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMME 179 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +HS T+ +I + + + LF+ +P I KA+WA+++ + S Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIEDKDS 229 >gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia angusta DL-1] Length = 408 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L D+ER + R L FFA+S+ Sbjct: 94 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNERYFVSRVLAFFAASD 151 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 152 GIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYVKDPKEAEFLFNAIE 211 Query: 151 EVPSITAKANWALQY 165 +P I KA WA+++ Sbjct: 212 TIPCIKEKAEWAMRW 226 >gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum] Length = 397 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W+ E+ + D+ W + L DDER I L FFA+S+ Sbjct: 79 LFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDWSDR--LNDDERYFISHVLAFFAASD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VHS T+ +I + D + LF+ Sbjct: 137 GIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETYSLLIDTYIKDPKQRTYLFDAID 196 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ + +S Sbjct: 197 TIPCIKKKADWAIRWIEDRNS 217 >gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis] Length = 214 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 6/150 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L A ++ LLP+KY +E Y A ++W EV + D+ W+ LTDDER + Sbjct: 4 ILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWRK---LTDDERHFVS 60 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + + PE R + Q+ EAVHS + ++ D Sbjct: 61 YVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIRDPD 120 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLS 170 E LF+ +P + KA WA+++ ++ S Sbjct: 121 ERDLLFHAVDTIPCVQKKAQWAMKWIESSS 150 >gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] Length = 255 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG+ ++A E + + R + L PLKY W+ Y A + W E+ + D Sbjct: 70 TGVKALEADEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMME 179 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +HS T+ +I + + + LF+ +P I KA+WA+++ + S Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIEDKDS 229 >gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1] Length = 399 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N LT DE+ I L FFA+S+ Sbjct: 79 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQYFISHILAFFAASD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + D + LFN Sbjct: 137 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKDPAQRTYLFNAVD 196 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q +S Sbjct: 197 TIPCIRKKADWAIRWIQDKNS 217 >gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7c] Length = 277 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 QL P++Y WA+ Y A N W P EV + DLA +K LT+DE+ +K + + + Sbjct: 19 QLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKK---LTEDEKNALKTVISYLNPN 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 E L+ ++ IY ++ EC YL +Q +EEA H TF+YII + + E++ Sbjct: 76 ELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAGWGK 135 Query: 153 PSITAKANWALQYT 166 S+ KA + +Y Sbjct: 136 KSLADKAAFQTKYV 149 >gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis ER-3] gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188] Length = 413 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG+ ++A E + + R + L PLKY W+ Y A + W E+ + D Sbjct: 70 TGMKALEAEEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCFYGFQIMME 179 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +HS T+ +I + + + LF+ +P I KA+WA+++ + S Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIEDKES 229 >gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei] Length = 337 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E L + R +P I KA WA+++ + +S Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS 166 >gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei] gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E L + R +P I KA WA+++ + +S Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS 166 >gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E L + R +P I KA WA+++ + +S Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS 166 >gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E L + R +P I KA WA+++ + +S Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS 166 >gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris CBS 7435] Length = 400 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W N + D+E+ I R L FFA+S+ Sbjct: 88 LFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEKFFISRVLAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 146 GIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAIE 205 Query: 151 EVPSITAKANWALQY 165 +P I KA+WA+++ Sbjct: 206 TIPCIKEKADWAMRW 220 >gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 400 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 81 MFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASD 138 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 139 GIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 198 Query: 151 EVPSITAKANWALQY 165 +P IT KANWA+++ Sbjct: 199 TIPCITKKANWAIRW 213 >gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] Length = 328 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 12/156 (7%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+K+ W W K AC W E+ + +DL W +K L +DER Sbjct: 8 ILTENPDRFVIFPIKHDDLWEWYKKCEAC--FWTAEEIDLSEDLNDWNNK--LNEDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 VKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 E E LF P+I KA+WAL++ + SPSF Sbjct: 124 EKEKNKLFKALENFPAIKEKADWALKW---IESPSF 156 >gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 340 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 87/157 (55%), Gaps = 4/157 (2%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++R+ + + +L +KY WA+ + N W P EV M D + +GLT Sbjct: 14 SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ Sbjct: 72 EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 131 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSP 172 S+ + E+++M+R + AK ++ + Y Q ++P Sbjct: 132 SISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNP 168 >gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 341 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 87/157 (55%), Gaps = 4/157 (2%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++R+ + + +L +KY WA+ + N W P EV M D + +GLT Sbjct: 15 SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 72 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ Sbjct: 73 EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 132 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSP 172 S+ + E+++M+R + AK ++ + Y Q ++P Sbjct: 133 SISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNP 169 >gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] Length = 401 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W + L DDER I R L FFA+S+ Sbjct: 82 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF Sbjct: 140 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFEALD 199 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 200 NIPCIRKKADWAIRWIQDKDS 220 >gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium anisopliae ARSEF 23] Length = 414 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDE+ I L FFA+S+ Sbjct: 93 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDEKYFISHILAFFAASD 150 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 151 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKENAQRTYLFNAID 210 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 211 TIPCIRKKADWAIRWIQDKES 231 >gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 413 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W E+ + DL W +K L ++ER I R L FFA+S+ Sbjct: 102 MFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERYFISRVLAFFAASD 159 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE + + Q E +HS T+ +I + D E LFN Sbjct: 160 GIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIKDPQEADYLFNAIA 219 Query: 151 EVPSITAKANWALQYTQ 167 +P I KA+WA+++ Q Sbjct: 220 NIPCIQKKADWAIKWIQ 236 >gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium acridum CQMa 102] Length = 411 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDE+ I L FFA+S+ Sbjct: 90 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDEKYFISHILAFFAASD 147 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 148 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKENAQRTYLFNAID 207 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 208 TIPCIRKKADWAIRWIQDKES 228 >gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger CBS 513.88] gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger] Length = 396 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 13/169 (7%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ ++A E + + R + L P+KY W+ Y A + W E+ + DL Sbjct: 60 GIKEMEASEPLLQENPHRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDL 111 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 112 HDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMEN 169 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +HS T+ +I + + + LF+ +P I KA+WA+++ Q S Sbjct: 170 IHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIAKKADWAIKWIQDRES 218 >gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] Length = 410 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 5/167 (2%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ + P A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 52 ADAEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W + L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E VHS T+ +I + + + LFN +P I KA+WAL++ Sbjct: 170 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRW 216 >gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] Length = 418 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y A + W E+ + D+ W N L D+ER I R L FFA+S+ Sbjct: 103 MFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNERYFISRILAFFAASD 160 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 161 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAIE 220 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 221 NIPCIKKKADWALRW 235 >gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 389 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N LT DE+ I L FFA+S+ Sbjct: 69 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQFFISHILAFFAASD 126 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 127 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIE 186 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 187 TIPCIRKKADWAIRWIQDKDS 207 >gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] Length = 409 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K + DDE+ I L FFA+S+ Sbjct: 88 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INDDEKYFISHILAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 146 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTHLFNAID 205 Query: 151 EVPSITAKANWALQY 165 +P+I KA+WAL++ Sbjct: 206 TIPAIRKKADWALRW 220 >gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] Length = 408 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 105 VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKFIKYILAFFAGSD 161 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + + E R + Q E VH T+ +I G ++ +LF + Sbjct: 162 GIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLIDKYIKDGAEKKQLFEAIQ 221 Query: 151 EVPSITAKANWALQYTQTLS 170 VP I KA+WA+++ T S Sbjct: 222 TVPCIQKKADWAMKWFDTKS 241 >gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 329 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +SP+ E ++ +D+R + P++Y WE Y A + W EV + DD+ Sbjct: 1 MSPLPLAEPLLDENDQRF--------TMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMK 52 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W++ LT DE+ + L FFA+S+ +V N+ + + PE R + Q E + Sbjct: 53 HWET---LTKDEKHFVSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENI 109 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 HS + +I D E LF +P + KA+WAL++ SS SF Sbjct: 110 HSEMYSLLIDQYIKDPVEKDHLFRAIDTIPCVKKKADWALKWID--SSDSF 158 >gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] Length = 394 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W E+ + DLA W N + ++ER I R L FFA+S+ Sbjct: 83 IYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWN--NKMNENERFFISRVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + Q E +HS T+ +I + D E LFN Sbjct: 141 GIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLIETYFKDPEEADFLFNAIE 200 Query: 151 EVPSITAKANWALQYTQ 167 +P I KA+WA+++ Q Sbjct: 201 NIPFIREKADWAIRWIQ 217 >gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] Length = 323 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 9/142 (6%) Query: 34 LLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K AC W E+ + DL W +K LTDDER IK L FFA+ Sbjct: 17 IFPIQHNDLWEWYKKQQAC--FWTAEEIDLHSDLVDWTTK--LTDDERYFIKHILAFFAA 72 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ +V N+ + E + + Q E +HS T+ +I + DE E ++R Sbjct: 73 SDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEKDRLFRA 132 Query: 152 V---PSITAKANWALQYTQTLS 170 + P+I KA+WAL++ ++ S Sbjct: 133 IEVFPAIKKKADWALKWIESES 154 >gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] Length = 414 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 17/162 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K + DDE+ I L FFA+S+ Sbjct: 93 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INDDEKYFISHILAFFAASD 150 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 151 GIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAID 210 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +P I KA+WAL W ++S TR + F Sbjct: 211 TIPCIRKKADWALT------------WITDKKSTFATRLVAF 240 >gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] Length = 335 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 5/150 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D L P+KY W Y A + W E+ + DL W SK L D+E Sbjct: 4 IIEEPILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSSK--LNDNE 61 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 62 RHFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTY 121 Query: 139 GLD---EGELFNMYREVPSITAKANWALQY 165 D + +LFN +P I KA+WAL++ Sbjct: 122 IKDNEQKSKLFNAIDTIPCIKKKADWALKW 151 >gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative; ribonucleotide reductase r2 subunit 1, putative; ribonucleotide reductase small subunit 1, putative [Candida dubliniensis CD36] gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative [Candida dubliniensis CD36] Length = 413 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W E+ + DL W +K L ++ER + R L FFA+S+ Sbjct: 102 MFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERYFVSRVLAFFAASD 159 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE + + Q E +HS T+ +I + D E LFN Sbjct: 160 GIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIKDPQEADYLFNAIA 219 Query: 151 EVPSITAKANWALQYTQ 167 +P I KA+WA+++ Q Sbjct: 220 NIPCIQKKADWAIKWIQ 236 >gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A +N W + + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+ + +V N V + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E L + R +P I KA WA+++ + +S Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS 166 >gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97] Length = 317 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++A E R+ + +R + L P+KY W+ Y A + W E+ + D+ W Sbjct: 73 LEAEEPRLQENPQRFV--------LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 T+ +I + ++ + LF +P I KA+WA+++ Q +S Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQDKNS 227 >gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] Length = 347 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 8/144 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D W+S LTD+E+ + L FFA+S+ Sbjct: 36 MFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAKHWES---LTDNEKHFVSHVLAFFAASD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D + +LFN Sbjct: 93 GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDNEVKAKLFNAIE 152 Query: 151 EVPSITAKANWALQYTQTLSSPSF 174 +P + KA+WAL++ SS SF Sbjct: 153 TIPCVAKKADWALRWID--SSQSF 174 >gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] Length = 388 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + D+ WK+ L D+E+ IK L FFA S+ Sbjct: 86 VFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LNDNEQKFIKYILAFFAGSD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + E R + Q+ E VH T+ +I G ++ +LF + Sbjct: 143 GIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLIDKYIKDGAEKKQLFEAIQ 202 Query: 151 EVPSITAKANWALQY 165 VP I KANWAL++ Sbjct: 203 TVPCIERKANWALKW 217 >gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] Length = 406 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER + R L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFVSRVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + PE R + Q E +HS T+ +I + ++E + LF+ Sbjct: 143 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY-INEPKQRTYLFDAI 201 Query: 150 REVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 202 DNIPCIRKKADWALRW 217 >gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus oryzae RIB40] gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae] gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] Length = 405 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I R L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERFFISRVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +H+ T+ +I + + + LF+ Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 204 TIPCIRKKADWAIRWIQDQES 224 >gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2 [Leptosphaeria maculans] Length = 410 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W + L DDER I L FFA+S+ Sbjct: 83 LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VHS T+ +I + + + LFN Sbjct: 141 GIVNENLVERFSGEVQIPEARCFYGFQIMMENVHSETYSLLIDTYISEPRQRKYLFNAID 200 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 201 NIPCIRKKADWALRW 215 >gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] Length = 325 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y + W E+ + DL W +K L DDER IK L FFA+S+ Sbjct: 17 IFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNNK--LNDDERYFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 +V N+ + E + + Q E +HS T+ +I + DE ELFN Sbjct: 75 GIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEKTELFNALE 134 Query: 151 EVPSITAKANWALQYTQTLS 170 P+I K WAL++ ++ S Sbjct: 135 VFPAIAKKGEWALKWIESDS 154 >gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +H T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E L + R +P I KA WA+++ + +S Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS 166 >gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum PN500] Length = 323 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D L P+K+ W+ Y A + W E+ + DL W+ K L D+ER Sbjct: 4 EEPILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQDK--LNDNERY 61 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 62 FISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTYIQ 121 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + E LFN +P + KANWAL++ +S Sbjct: 122 NPAEKTKLFNAIETIPCVQKKANWALKWISNSTS 155 >gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 376 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y A + W EV + D W++ L+D ER I R L FFA+S+ Sbjct: 69 IFPIKYHDIWDFYKRAVASFWTVEEVDLSKDYQHWEN---LSDGERFFISRVLAFFAASD 125 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + ++ + D+ E LFN Sbjct: 126 GIVNENLVERFAQEVQVPEARFFYGFQIMIENIHSEMYSKMVETYIRDDNERKKLFNAIN 185 Query: 151 EVPSITAKANWALQYTQTLSSP 172 E I KA+WAL++ +P Sbjct: 186 EFEFIKKKADWALKWIADKQAP 207 >gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] Length = 330 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A + W E+ + DL W K L DDER I L FFA+S+ Sbjct: 19 LFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDEK--LNDDERHFITHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + +PE R + Q E +H+ T+ +I + D E LFN Sbjct: 77 GIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDTYIKDADEKHRLFNALE 136 Query: 151 EVPSITAKANWALQY 165 VP + KA WAL++ Sbjct: 137 TVPCVKKKAEWALRW 151 >gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum] Length = 335 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 5/145 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W Y A + W E+ + D+ W++K L D+ER IK Sbjct: 9 LLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWENK--LNDNERHFIK 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 67 NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKNPD 126 Query: 144 E---LFNMYREVPSITAKANWALQY 165 E LFN +P + KA+WAL++ Sbjct: 127 EKKVLFNAIETIPCVKKKADWALRW 151 >gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + DLA W+ N + E+ Sbjct: 16 EEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMN---EGEKF 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + Sbjct: 73 FIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYIT 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E + + +P I KANWA+++ ++ SS Sbjct: 133 DTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS 166 >gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + DLA W+ N + E+ Sbjct: 16 EEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMN---EGEKF 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + Sbjct: 73 FIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYIT 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E + + +P I KANWA+++ ++ SS Sbjct: 133 DTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS 166 >gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] Length = 325 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 9/152 (5%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+K+ W W K AC W E+ + DL W +K L DDE+ Sbjct: 7 ILQENKDRFVIFPIKHQDIWEWYKKQEACI--WTAEEIDLHTDLNDWNNK--LNDDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + PE + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLS 170 E E LF+ P+I KA WAL++ ++ S Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIESDS 154 >gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] Length = 340 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + + NV+D+++ + + +L +KY WA+ + NN W P EV M D+ +K+ Sbjct: 10 DSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDVNDYKN-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT++E+ + L +SL NN++ + ++++PE L+RQ+FEEA+HS ++ Sbjct: 68 -LTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEALHSQSYA 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFH 175 ++ S+ + E+++++R + K + A Y + ++P+ H Sbjct: 127 VMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELAANPTEH 170 >gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase [Arabidopsis thaliana] gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A; AltName: Full=Ribonucleoside-diphosphate reductase R2A subunit; Short=AtRNR2; Short=Protein R2at; AltName: Full=Ribonucleotide reductase small subunit A gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana] gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana] gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana] Length = 341 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L A++ + P++Y WE Y A + W EV + D+ W++ LTD E+ Sbjct: 18 EEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKH 74 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + PE R + Q E +HS + ++ + Sbjct: 75 FISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIK 134 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQT 168 D E LFN +P I+ KA W L + Q+ Sbjct: 135 DSKEKDRLFNAIETIPCISKKAKWCLDWIQS 165 >gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas denitrificans DSM 1251] gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans DSM 1251] Length = 340 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E NV+D+R+ + + +L +KY WA+ + NN W P EV M D++ +K Sbjct: 10 ESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVSDYKQ-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 +TD E+ + L +SL NNI+ I ++++PE L+RQA+EEA+HS ++ Sbjct: 68 -ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEEALHSQSYA 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-SPSFH 175 ++ ++ + E++ ++R + K + + + LS +P+ H Sbjct: 127 VMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELSKNPTEH 170 >gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767] gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii] Length = 426 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D W K L ++ER I R L FFA+S+ Sbjct: 114 LFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNEK--LNNNERYFISRILAFFAASD 171 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 172 GIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAID 231 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 232 NIPCIKKKADWALRW 246 >gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 3 [Canis familiaris] Length = 338 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +I + D + LFN +P + KA+WAL++ + S Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS 181 >gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] Length = 341 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L A++ + P++Y WE Y A + W EV + D+ W++ LTD E+ I Sbjct: 21 LLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKHFIS 77 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 78 HVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFLKDSK 137 Query: 144 E---LFNMYREVPSITAKANWALQYTQT 168 E LFN +P I+ KA W L + Q+ Sbjct: 138 EKDRLFNAIETIPCISKKAKWCLDWIQS 165 >gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 4 [Canis familiaris] Length = 374 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +I + D + LFN +P + KA+WAL++ + S Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS 181 >gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 362 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S A E ++D++ +L + P++Y W+ Y A + W EV + DL Sbjct: 28 MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E V Sbjct: 88 HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 HS + +I + D + LFN +P + KA+WAL++ + S Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWIEDRES 192 >gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] Length = 324 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 D E LF+ VP + KA WAL++ S Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWIDNGS 153 >gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 2 [Canis familiaris] Length = 351 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +I + D + LFN +P + KA+WAL++ + S Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS 181 >gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A [Paracoccidioides brasiliensis Pb03] Length = 413 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 91 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 148 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 149 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 208 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ + S Sbjct: 209 TIPCIRKKADWAIRWIEDKES 229 >gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 339 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W+ Y +A + W EV + D W++K L +DER +K L FFAS++ Sbjct: 10 ILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQNK--LNEDERHFLKHILAFFASAD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + ++ E R + +Q F E VHS + +I DE E L N + Sbjct: 68 SIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLNAFN 127 Query: 151 EVPSITAKANWALQYTQT 168 ++ + KA WAL++T++ Sbjct: 128 DIECVRKKAQWALKWTES 145 >gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans CBS 112818] Length = 408 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q +S Sbjct: 207 TIPCIRKKADWAIRWIQDKNS 227 >gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] Length = 408 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q +S Sbjct: 207 TIPCIRKKADWAIRWIQDKNS 227 >gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis] gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis] Length = 384 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 6/154 (3%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 56 AKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 113 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L D ER+ + L FFA+S+ +V N+V + + PE R + Q E +HS + Sbjct: 114 -LNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYS 172 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 +I SL D+ E LFN +P + KA+WAL Sbjct: 173 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWAL 206 >gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] Length = 326 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 12/156 (7%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ + +D W +K L DDER Sbjct: 7 ILQENKDRFVIFPIQHNDLWEWYKKQEAC--IWTAEEIDLSEDANDWNNK--LNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 E E LF P+I KA+WAL++ + SPSF Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKW---IDSPSF 155 >gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] Length = 529 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 210 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 267 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 268 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 327 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 328 TIPCIRKKADWAIRWIQDKDS 348 >gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Oryctolagus cuniculus] Length = 339 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D++ +L S + P++Y W+ Y A + W EV + DL W N LT D Sbjct: 16 NEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NRLTSD 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + PE R + Q E VHS + +I + Sbjct: 73 EKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDT 132 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D + LFN +P + KA+WAL++ Sbjct: 133 YIRDPKKREFLFNAIETMPYVKKKADWALRW 163 >gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] Length = 328 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 12/156 (7%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ + DL W +K L DDE+ Sbjct: 8 ILQENKDRFVIFPIQHHDLWEWYKKQEAC--IWTAEEIDLHQDLTDWNTK--LNDDEKYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 + E LF P+I KA+WAL++ + SPSF Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKW---IESPSF 156 >gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] Length = 408 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 207 TIPCIRKKADWAIRWIQDKDS 227 >gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] Length = 325 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 18/174 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A ++ W EV + D W S L D ER I Sbjct: 10 LLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDWLS---LNDKERYFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+V ++ E + + Q E +HS + +I + D+ Sbjct: 67 NILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITDQD 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN +P I KA+WAL+ W K +S TR + F C Sbjct: 127 EKTHLFNAISTIPCIKKKADWALK------------WIKDEKSSFATRVIAFAC 168 >gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] Length = 324 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGE---LFNMYREVPSITAKANWALQY 165 D E LF+ VP + KA WAL++ Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRW 148 >gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] Length = 401 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L +DER I L FFA+S+ Sbjct: 84 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISHVLAFFAASD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 142 GIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 201 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 202 NIPCIAKKADWAIKWIQDQES 222 >gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus caballus] Length = 351 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W N LT DE+ I L FFA+S+ Sbjct: 44 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLTSDEKYFISHVLAFFAASD 100 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 160 Query: 151 EVPSITAKANWALQY 165 +P + KA+WALQ+ Sbjct: 161 TMPYVKKKADWALQW 175 >gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 379 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 GE + ++ +L L P++Y W Y A + W E+ + D+ W Sbjct: 45 VGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW--- 101 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LT+ ER + R L FFASS+ +V N+V + PE R + Q E VHS T+ Sbjct: 102 SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSETY 161 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +I + D E LF +PSI KA WAL +T S+ Sbjct: 162 SLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWALTWTSDKST 204 >gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 394 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W E+ + DL W +K + ++ER I R L FFA+S+ Sbjct: 83 IYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWNNK--MNENERFFISRVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + Q E +HS T+ +I + D E LFN Sbjct: 141 GIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLIETYFKDPEEADFLFNAID 200 Query: 151 EVPSITAKANWALQYTQT 168 +P I KA+WA+++ Q+ Sbjct: 201 NIPFIRKKADWAIRWIQS 218 >gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica] Length = 418 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ WK L +E+ IK L FFA+S+ Sbjct: 106 IFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---LKKEEQFFIKHVLAFFAASD 162 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I +L D E LFN Sbjct: 163 GIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGLFNAIE 222 Query: 151 EVPSITAKANWALQY 165 +P+I KA+WAL++ Sbjct: 223 TMPAIKKKADWALKW 237 >gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi] gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi] Length = 338 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PL+Y WE Y A + W EV + D+ W + LT +E+ IK L FFA+S+ Sbjct: 31 LFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTT---LTPNEQHFIKSVLAFFAASD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +H+ + +I +L D+ E LFN Sbjct: 88 GIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERHRLFNAID 147 Query: 151 EVPSITAKANWALQY 165 VPS+ KA WA+++ Sbjct: 148 TVPSVQKKARWAMKW 162 >gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 6/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E ++ ++ +L D + P+KY W+KY + ++ W E+ + DLA W+ N Sbjct: 9 EFQLQEQEEPLLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWEKMN- 67 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 + E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ Sbjct: 68 --EGEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSV 125 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 ++ + D E + + +P I KANWA+++ ++ SS Sbjct: 126 LLDTYITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS 166 >gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia] Length = 355 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 5 TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +QA + +N + D+ +L + L P+KY W Y + W E+ + Sbjct: 18 TPLSNVQASQTVLNQNYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 77 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 78 QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 134 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E +HS T+ +I + DE E L + VP I KA WA+++ Sbjct: 135 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKW 180 >gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis] Length = 352 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DLA W S L +E+ I L FFA+S+ Sbjct: 17 IFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHWDS---LKPEEKHFISHVLAFFAASD 73 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E+VHS + +I + D E LFN Sbjct: 74 GIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYIRDLKEREHLFNAIY 133 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA+WALQ+ +S Sbjct: 134 TMPCVKRKADWALQWINDSTS 154 >gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] Length = 408 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERYFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 207 TIPCIRKKADWAIRWIQDKDS 227 >gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W + + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E L + R +P I KA WA+++ + +S Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS 166 >gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] Length = 406 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 7/136 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + PE R + Q E +HS T+ +I + ++E + LF+ Sbjct: 143 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY-INEPKQRTYLFDAI 201 Query: 150 REVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 202 DNIPCIRKKADWALRW 217 >gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] Length = 408 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 105 VFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKFIKYILAFFAGSD 161 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + E R + Q E VH T+ +I G ++ +LF + Sbjct: 162 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDGSEKKQLFEAIQ 221 Query: 151 EVPSITAKANWALQYTQTLS 170 VP I KA WA+++ T S Sbjct: 222 TVPCIEKKAKWAMKWFDTKS 241 >gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica] Length = 382 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ WK L +E+ IK L FFA+S+ Sbjct: 70 IFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---LKKEEQFFIKHVLAFFAASD 126 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I +L D E LFN Sbjct: 127 GIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGLFNAIE 186 Query: 151 EVPSITAKANWALQY 165 +P+I KA+WAL++ Sbjct: 187 TMPAIKKKADWALKW 201 >gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] Length = 343 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 83/154 (53%), Gaps = 3/154 (1%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++R+ + + +L +KY WA+ + N W P EV M D + +GLT Sbjct: 17 SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYS--DGLTP 74 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ Sbjct: 75 EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 134 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 S+ + E++ M+R + +K ++ + LS Sbjct: 135 SISANTDEIYEMWRTDIQLKSKNDYIANVYEELS 168 >gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 402 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 9/165 (5%) Query: 5 TGLSPIQAGEKRV---NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T + P++ +++ N +D+ +L + P+KY W+ Y A + W EV + Sbjct: 63 TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA W S L DDER I L FFA+S+ +V N+V + + E R + Q Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 E +HS + +I + D E LFN +P + KA WAL Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWAL 224 >gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces cerevisiae] Length = 399 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y ++ E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYEASFWTAETAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001] Length = 413 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 5/148 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY W+ Y A + W E+ + DL W +K + +DE+ Sbjct: 79 DEPLLQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INEDEKY 136 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I + Sbjct: 137 FISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIK 196 Query: 141 DEGE---LFNMYREVPSITAKANWALQY 165 + + LFN +P I KA+WAL++ Sbjct: 197 EPAQRTYLFNAIDTIPCIRKKADWALKW 224 >gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] Length = 326 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 5/140 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + WE Y + W E+ +Q D+ WK+K L+ DE+ IK L FFA+S+ Sbjct: 17 LFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKTK--LSKDEQYFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D+ E LF Sbjct: 75 GIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDDDKEKDLLFKAIE 134 Query: 151 EVPSITAKANWALQYTQTLS 170 P+I KA+WALQ+ ++ S Sbjct: 135 NFPAIKKKADWALQWIESDS 154 >gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] Length = 341 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 86/157 (54%), Gaps = 4/157 (2%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+++++ + + +L +KY WA+ + N W P EV M D + +GLT + Sbjct: 16 VNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTPE 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ S Sbjct: 74 EKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVES 133 Query: 138 LGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPS 173 + + E++ M+R + +K ++ + Y Q ++P+ Sbjct: 134 ISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLATNPT 170 >gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans] Length = 406 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L +DER I R L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +H+ T+ +I + + + LF+ Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 204 TIPCIRKKADWAIKWIQDKES 224 >gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8] [Aspergillus nidulans FGSC A4] Length = 406 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L +DER I R L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +H+ T+ +I + + + LF+ Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 204 TIPCIRKKADWAIKWIQDKES 224 >gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Ailuropoda melanoleuca] Length = 387 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 60 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 116 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 117 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 176 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +I + D + LFN +P + KA+WAL++ + S Sbjct: 177 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS 217 >gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum PN500] Length = 335 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W+ Y A + W E+ + D+ W++K L D+ER I Sbjct: 9 ILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWENK--LNDNERHFIT 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 67 NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDSE 126 Query: 142 -EGELFNMYREVPSITAKANWALQY 165 + +F+ +P++ KA+WAL++ Sbjct: 127 TKRNIFHAIDTIPAVKKKADWALRW 151 >gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] Length = 394 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 13/162 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L ++ E +N D R++ + P++Y +E Y A + W E+ + DL+ Sbjct: 62 LKEMEKNEPLLNEDKNRLI--------MHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLS 113 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W K L +ER I R L FFA+S+ +V N+ + PE R + Q E + Sbjct: 114 DWNDK--LNSNERFFISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENI 171 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 HS T+ +I + D E LFN +P I KA WAL++ Sbjct: 172 HSETYSLLIDTYIKDPKESDFLFNAIDYIPQIKEKAEWALRW 213 >gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa] gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa] Length = 342 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 8/159 (5%) Query: 15 KRVNVDDKR--MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +R+ +DK+ +L ++ + P++Y WE Y A + W EV + D+ W++ Sbjct: 11 ERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWEA-- 68 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+D E+ I L FFA+S+ +V N+ + PE R + Q E +HS + Sbjct: 69 -LSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIAMENIHSEMYS 127 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 ++ + D E LFN +P + KA WAL + Q+ Sbjct: 128 LLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQS 166 >gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca] Length = 336 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 9 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 66 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 125 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +I + D + LFN +P + KA+WAL++ + S Sbjct: 126 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS 166 >gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo sapiens] Length = 423 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 G S E + +++ +L S + P++Y W+ Y A + W EV + Sbjct: 86 QAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSK 145 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 146 DLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILI 202 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E VHS + +I + D + LFN +P + KA+WAL++ Sbjct: 203 ENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 247 >gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] Length = 330 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 12/156 (7%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ +Q D+ W+ N L DER Sbjct: 8 ILQENPDRFVIFPIQHDDLWEWYKKQQAC--IWTAEEIDLQVDITDWQ--NSLNSDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGELFNMYREV---PSITAKANWALQYTQTLSSPSF 174 + E ++R + P+I KA+WA+++ + SPSF Sbjct: 124 DAEKDQLFRAIENFPAIKLKADWAMKW---IESPSF 156 >gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] Length = 389 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 86 VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEQKFIKYILAFFAGSD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V NI + E R + Q E VH T+ +I D + ELF + Sbjct: 143 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEKKELFEAIQ 202 Query: 151 EVPSITAKANWALQYTQTLS 170 VP I KA WA+++ T S Sbjct: 203 TVPCIEKKAQWAMKWFDTKS 222 >gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] Length = 322 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 19 VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEQKFIKYILAFFAGSD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V NI + E R + Q E VH T+ +I D + ELF + Sbjct: 76 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEKKELFEAIQ 135 Query: 151 EVPSITAKANWALQYTQTLS 170 VP I KA WA+++ T S Sbjct: 136 TVPCIEKKAQWAMKWFDTKS 155 >gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 288 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 9/102 (8%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H Q+ Sbjct: 1 MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHV---QF 57 Query: 134 IITSLGL------DEGELFNMYREVPSITAKANWALQYTQTL 169 +T L D + F +PSI KA + L++ ++ Sbjct: 58 YLTLLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSI 99 >gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] Length = 325 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 9/152 (5%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+K+ W W K + AC W E+ + +DL+ W +K L+ DER Sbjct: 7 ILQENKDRFVIFPIKHHDIWDWYKKMEAC--FWTAEEIDLHEDLSDWNNK--LSADERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + + Sbjct: 63 LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLS 170 E E LF P+I KA+WAL++ ++ S Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIESDS 154 >gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio] gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Danio rerio] gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase protein R2 class I; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio] gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio] gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio] Length = 386 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL W S Sbjct: 56 QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + +I + D E LFN +P + KA+WAL + Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNW 210 >gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] Length = 387 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y + + W E+ + D W++K + DER I R L FFA+S+ Sbjct: 76 VFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWENK--MNKDERFFISRVLAFFAASD 133 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + Q E +HS T+ +I + D E LFN Sbjct: 134 GIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFKDPKEADFLFNAID 193 Query: 151 EVPSITAKANWALQYTQ 167 + I KA+WA+++ Q Sbjct: 194 NIKYIGEKADWAIRWIQ 210 >gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] Length = 386 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL W S Sbjct: 56 QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + +I + D E LFN +P + KA+WAL + Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNW 210 >gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] Length = 323 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 5/145 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+ + W+ Y A + W E+ + DL W K L +DE+ IK Sbjct: 7 ILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDWDRK--LNNDEKYFIK 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + + PE R + Q E +HS + +I + Sbjct: 65 HILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKDPT 124 Query: 141 DEGELFNMYREVPSITAKANWALQY 165 D+ LF +P I+ KA+WAL++ Sbjct: 125 DKNRLFKALETIPCISNKADWALRW 149 >gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 240 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y +A + W E+ + D A W+ LTD ER I R L FFA+S+ Sbjct: 23 IFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGERFFISRVLSFFAASD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N+ + PE R + Q E VHS + +I + D E F+ Sbjct: 80 GIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYIKDPKEQMVHFDAIH 139 Query: 151 EVPSITAKANWALQYTQTLSSP 172 + I KA+WAL++ +SP Sbjct: 140 QFECIKKKADWALRWIDDRNSP 161 >gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit [Bacteriovorax marinus SJ] Length = 322 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L PLKY +E Y + W E+ D+ W+ L DE+ IK Sbjct: 4 ILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWEK---LNKDEQHFIK 60 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L Y + PE R + Q E +HS T+ +I + D Sbjct: 61 HILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDPK 120 Query: 142 -EGELFNMYREVPSITAKANWALQYTQT 168 + ELF+ P + KA+WA+++ Q+ Sbjct: 121 EKDELFHAVTHFPFVEKKADWAMKWMQS 148 >gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] Length = 349 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 S +Q G K +N +++LN SD L P+ Y W+ Y A + W E+ + DL Sbjct: 20 FSDLQKG-KEIN---EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL- 74 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 K L ++E+ IK L FFA+S+ +V N+ R + E +++ Q E + Sbjct: 75 --KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENI 132 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 HS T+ +I + DE E LF+ +P++ KA WA ++ +S Sbjct: 133 HSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] Length = 340 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 4/134 (2%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 NV+D+++ + + +L +KY WA+ + NN W P EV M D+ +K LTD Sbjct: 14 NVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDVNDYKQ---LTD 70 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + L +SL NN++ + +++ PE L+RQ+FEEA+HS ++ ++ Sbjct: 71 AEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEEALHSQSYAVMVD 130 Query: 137 SLGLDEGELFNMYR 150 S+ + E+++++R Sbjct: 131 SISTNSEEIYDLWR 144 >gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] Length = 405 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 202 Query: 151 EVPSITAKANWALQY 165 +P I KA WA+++ Sbjct: 203 TIPCIAKKAQWAMRW 217 >gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] Length = 405 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRAYLFDAID 202 Query: 151 EVPSITAKANWALQY 165 +P I KA WA+++ Sbjct: 203 TIPCINKKAQWAMRW 217 >gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum] Length = 349 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 S +Q G K +N +++LN SD L P+ Y W+ Y A + W E+ + DL Sbjct: 20 FSDLQKG-KEIN---EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL- 74 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 K L ++E+ IK L FFA+S+ +V N+ R + E +++ Q E + Sbjct: 75 --KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENI 132 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 HS T+ +I + DE E LF+ +P++ KA WA ++ +S Sbjct: 133 HSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] Length = 409 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W + L DDER I L FFA+S+ Sbjct: 83 LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +V N+V + + PE R + Q E +HS T+ +I + + + LFN Sbjct: 141 GIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSETYSLLIDTYISEPRQRTYLFNAI 200 Query: 150 REVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 201 DNIPCIRKKADWALKW 216 >gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] Length = 403 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 17/155 (10%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+ Y A + W E+ + DL W +K LTDDE+ I L FFA+S+ +V N+ Sbjct: 84 FVWQMYKKAEASFWTAEEIDLSKDLHDWNNK--LTDDEKYFISHILAFFAASDGIVNENL 141 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 V + PE R + Q E +HS T+ +I + + + LFN +P I Sbjct: 142 VERFSAEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKETAQRTYLFNAIDTIPCIRK 201 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 KA+WAL+ W ++S TR + F Sbjct: 202 KADWALR------------WITDKKSTFATRLIAF 224 >gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 337 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y +A + W E+ + D A W+ LTD ER I R L FFA+S+ Sbjct: 30 IFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGERFFISRVLSFFAASD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N+ + PE R + Q E VHS + +I + D E F+ Sbjct: 87 GIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYIKDPKEQMVHFDAIH 146 Query: 151 EVPSITAKANWALQYTQTLSSP 172 + I KA+WAL++ +SP Sbjct: 147 QFECIKKKADWALRWIDDRNSP 168 >gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 320 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y W+ Y A + W E+ + DL K L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSS 171 E E LF+ +P++ KA WA ++ +S Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS 151 >gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex] Length = 378 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 10/176 (5%) Query: 4 NTGLSPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 N + + EK V V D + +L + L P++Y W+ Y A + W EV Sbjct: 35 NVSPTKLTTVEKSVQVRDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEEV 94 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + DL W + L +ER + L FFA+S+ +V N+V + + PE R + Sbjct: 95 DLSKDLKDW---DNLQPNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGF 151 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 Q E +HS + +I + D E LFN +P I KA WA+++ +P Sbjct: 152 QIAMENIHSEMYSLLIETYIKDSAERTRLFNAVETMPCIAKKAEWAMKWIGNKDAP 207 >gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 361 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 54 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASD 110 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + +I + D + LFN Sbjct: 111 GIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSLLIDTYIKDPQKREFLFNAIE 170 Query: 151 EVPSITAKANWALQY 165 +P + KA+WALQ+ Sbjct: 171 TMPCVKRKADWALQW 185 >gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus] gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple nucleopolyhedrovirus] Length = 313 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 5/138 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + W Y A + W EV M D ++SK L DDER IK L FFA+++ Sbjct: 8 LKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFESK--LNDDERYFIKHVLAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + R++ E + + Q E VH+ + +I L DE E L N + Sbjct: 66 SIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLNAFE 125 Query: 151 EVPSITAKANWALQYTQT 168 VP + KA WA+++ ++ Sbjct: 126 HVPCVRKKAQWAMKWIES 143 >gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus Af293] gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus Af293] gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus A1163] Length = 405 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 202 Query: 151 EVPSITAKANWALQY 165 +P I KA WA+++ Sbjct: 203 TIPCIRKKAQWAMRW 217 >gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi] gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi] Length = 338 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PL Y WE Y + W EV + D+ W+ L +E+ IK L FFA+S+ Sbjct: 31 LFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWEK---LNSNEQHFIKTVLAFFAASD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +H+ + +I +L D+ E LF+ Sbjct: 88 GIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNRLFHAID 147 Query: 151 EVPSITAKANWALQYTQT 168 VPS+ KANWAL++ + Sbjct: 148 TVPSVQKKANWALKWINS 165 >gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I isoform 1 [Strongylocentrotus purpuratus] gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I [Strongylocentrotus purpuratus] Length = 412 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 7 LSPIQAGEKRV--NVDDKRML--NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + P +G+K V N +D+ +L NAR V + P++Y W+ Y A + W EV + Sbjct: 71 VKPENSGKKVVSFNKEDEPLLRENARRFV--IFPIQYHDIWQFYKKAEASFWTAEEVDLS 128 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W + L D+ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 129 KDLDHWAN---LKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFYGFQIA 185 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 E +HS + +I + D + LFN +P +T KA WAL + + S+ Sbjct: 186 IENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNWIGSDSA 237 >gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis T2Bo] gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative [Babesia bovis] Length = 339 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N L P+KY WE Y A + W E+ + DL W + LT+ E IK L FFA+ Sbjct: 31 NGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDWGT---LTEGEHHFIKNVLAFFAA 87 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ +V N+ L + + PE + + Q E +HS T+ +I DE E ++R Sbjct: 88 SDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYIRDEAEKDRLFRA 147 Query: 152 VPSITA---KANWALQY 165 + +I A KA WA ++ Sbjct: 148 IETIDAVRDKAIWAAKW 164 >gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans morsitans] Length = 396 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W N L+D ER I L FFA+S+ Sbjct: 89 IFPIQYPEIWKMYKKAEASFWTAEEVDLSKDMDDW---NRLSDGERHFISHVLAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + +DE E LFN Sbjct: 146 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSLLIETYIMDEKEREYLFNAIE 205 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA WAL + + S+ Sbjct: 206 TMPLVKKKAEWALAWISSHSA 226 >gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia] Length = 507 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 5 TGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +Q + V N D+ +L + L P+KY W Y + W E+ + Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 230 QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E +HS T+ +I + DE E L + VP I KA WA+++ Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKW 332 >gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC 30864] Length = 352 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 26/190 (13%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GLS ++ E + + R + L P++Y W+ Y A + W EV + DL Sbjct: 25 GLSKLELDEPLLKPNPHRFV--------LFPIQYHDVWKMYKKAEASFWTAEEVDLSKDL 76 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W + L +ER I L FFA+S+ +V N++L + PE R + Q E Sbjct: 77 NDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIEN 133 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS + +I D E LFN +P + KA WAL+ W RR Sbjct: 134 IHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALR------------WISDRR 181 Query: 183 SRILTRSLRF 192 S R + F Sbjct: 182 STFAHRLIAF 191 >gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor sp. SB155-2] gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor sp. SB155-2] Length = 341 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +V+++++ + + +L +KY WA+ + N W P EV M D +K Sbjct: 12 ESHESVNERKVFGGDPTGIFELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDARDYKL-- 69 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LTD E+L + L +SL NN++ + +++ PE L+RQAFEEA+HS ++ Sbjct: 70 -LTDAEKLAYDKVLAQLIFMDSLQTNNLIDNVNPYITAPEINLILVRQAFEEALHSQSYA 128 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANW-ALQYTQTLSSPS 173 ++ S+ + E++ ++RE + K ++ A Y + ++PS Sbjct: 129 VMVDSISQNTDEIYELWREDLQLKQKNDYIAHVYEELAANPS 170 >gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] Length = 331 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W+ N + D+ER I L FFA+S+ Sbjct: 19 LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNERHFISHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + E LFN Sbjct: 77 GIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIREAAEREHLFNAVE 136 Query: 151 EVPSITAKANWALQY 165 +P + KA WAL++ Sbjct: 137 TIPCVARKAQWALRW 151 >gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 1 [Callithrix jacchus] Length = 351 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S E + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 18 SSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 78 W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 S + +I + D + LFN +P + KA+WAL++ Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 175 >gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276] gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii WM276] Length = 401 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W++K L D+ER I+ L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENK--LNDNERYFIEHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +H+ T+ +I + D LF+ Sbjct: 144 GIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAETYSLLIDTYIKDTARRNFLFDAMD 203 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 204 TIPCIRKKADWALRW 218 >gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana] Length = 340 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 13/154 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L A++ + P++Y WE Y A + W EV + D+ W++ LTD E+ Sbjct: 18 EEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKH 74 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITS 137 I L FFA+S+ +V N+ R L++ PE R + Q E +HS + ++ + Sbjct: 75 FISHILAFFAASDGIVLENLA----RFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLET 130 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 D E LFN +P I+ KA W L + Q+ Sbjct: 131 FIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS 164 >gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var. neoformans JEC21] gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 401 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W++K L D+ER I+ L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENK--LNDNERYFIEHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +H+ T+ +I + D LF+ Sbjct: 144 GIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAETYSLLIDTYIKDTARRNFLFDAID 203 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 204 TIPCIRKKADWALRW 218 >gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens] Length = 351 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + +++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 +I + D + LFN +P + KA+WAL++ Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 175 >gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo sapiens] gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) isoform 2 [Pan troglodytes] gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2 gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens] gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens] gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo sapiens] gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens] gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo sapiens] gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct] gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic construct] Length = 351 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + +++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 +I + D + LFN +P + KA+WAL++ Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 175 >gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes] Length = 418 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N L D ER I R L FFA+S+ Sbjct: 104 LFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRLNDSERFFISRVLAFFAASD 161 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS T+ +I + D E LF+ Sbjct: 162 GIVNENLLERFSNEVQVAEARCFYGFQIMMENIHSETYSLLIDTYIKDPVERDFLFDAIE 221 Query: 151 EVPSITAKANWALQY 165 +P I KA WAL++ Sbjct: 222 TIPCIKRKAEWALRW 236 >gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + +++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 28 ESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 84 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 85 LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 144 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 +I + D + LFN +P + KA+WAL++ Sbjct: 145 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 179 >gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter mustelae 12198] gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter mustelae 12198] Length = 344 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 3/145 (2%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+D+++ + + L +KY WA++ + + N W P EV M +D + N LT Sbjct: 19 SVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVSMNEDKRDYN--NLLTA 76 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+L R L +SL NN++ + ++++PE L+RQA+EEA+HS ++ ++ Sbjct: 77 QEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEALHSQSYAVMVE 136 Query: 137 SLGLDEGELFNMYREVPSITAKANW 161 S+ + E+++M+R + +K ++ Sbjct: 137 SISANTDEIYDMWRVDMQLKSKNDY 161 >gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina 98AG31] Length = 385 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W Y A + W E+ + D+ W+ N L DDE+ IK L FFA+S+ Sbjct: 65 LFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE--NRLNDDEKHFIKHVLAFFAASD 122 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V N++ + E R + Q E +HS + +I + ++ LF+ Sbjct: 123 GIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSEVYSLLIDTYVREPIERSHLFDAID 182 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL++ Sbjct: 183 TIPCIRKKADWALKW 197 >gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis] Length = 335 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L + D + P+KY WE Y A + W EV + D+ W+ L+DDER + Sbjct: 16 LLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWER---LSDDERHFVS 72 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + + PE R + Q E +HS + ++ + D Sbjct: 73 HVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSLLLEAYIKDPK 132 Query: 144 E---LFNMYREVPSITAKANWALQYT 166 E LF+ VP + KA+WAL++ Sbjct: 133 EKDKLFHAIDTVPVVRKKAHWALKWI 158 >gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii] gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii] Length = 351 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + +++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 +I + D + LFN +P + KA+WAL++ Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 175 >gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis] Length = 369 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+S L DDER I L FFA+S+ Sbjct: 14 IFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERFFISHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + + E LFN Sbjct: 71 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIE 130 Query: 151 EVPSITAKANWAL 163 +P + KA+WAL Sbjct: 131 TLPCVKKKADWAL 143 >gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] Length = 344 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 3/126 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E ++ + HW+ TEVPM +D+ ++ K LTD ER + + L FF + Sbjct: 35 PFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQK--LTDSERDFLTKILRFFTQGDID 92 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V+ V + PE R L A EAVH + ++I +LGL E ++N + + ++ Sbjct: 93 VSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPES-IYNEFLQYEAM 151 Query: 156 TAKANW 161 AK ++ Sbjct: 152 AAKHDF 157 >gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] Length = 319 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A NN+W+P E + +D + K L D ER + +GFF+S+E V NI L I Sbjct: 37 YTKAKNNYWIPEEYDLANDKHEFYEK--LNDIERHYMLHTVGFFSSAEGWVGQNI-LEIS 93 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + + N E R +L Q EE H TF+YI+ L L E++ M+ V I KA++ ++ Sbjct: 94 KRIRNTETRMFLGYQLMEEMKHIDTFRYIMDGLDLKPHEVYAMHENVKEIKRKADFEVKR 153 Query: 166 TQTL 169 L Sbjct: 154 AMAL 157 >gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos taurus] gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus] Length = 351 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 +I + D + LFN +P + KA+WAL++ Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 175 >gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] Length = 325 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 8/144 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y + W E+ + DL W +K LT+DE+ IK L FFA+S+ Sbjct: 17 IFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNTK--LTEDEKYFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D+ E LF Sbjct: 75 GIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDVEKDRLFKAIE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSF 174 P+I KA+WAL++ + S SF Sbjct: 135 VFPAIKKKADWALRW---IDSDSF 155 >gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 329 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 6/156 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D + P++Y WE Y A + W EV + DL W+S LT DE Sbjct: 4 IPEEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 61 KHFISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E LF+ VP I KA WAL++ S Sbjct: 121 IKDSNEKNRLFHAIETVPCIAKKAEWALKWIDGSES 156 >gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis] gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis] Length = 224 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 5/150 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+K+ WE Y + W E+ + D+ W +K L +DE+ IK Sbjct: 7 ILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNTK--LNEDEKYFIK 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEV 124 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLS 170 E LF+ P+I KA WAL++ ++ S Sbjct: 125 EKDKLFHAIEVFPAIKRKAEWALKWIESDS 154 >gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 2] Length = 324 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 18/164 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ W+ Y + W P E+ D+ W N L DE+ IK L FFASS+ Sbjct: 19 MFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTDEQYFIKMILAFFASSD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ L + E R + Q E +HS T+ +I S D E LF+ Sbjct: 76 GIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIKDSDEKHKLFHSLE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 P I K +WA++ W + ++S TR + F C Sbjct: 136 HFPCIKKKGDWAMK------------WIQDKKSSFATRLVAFAC 167 >gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818] Length = 408 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W Y A + W EV + DL W+ GL D E+ IK L FFA+S+ Sbjct: 98 ILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLKDTEQHFIKHVLAFFAASD 154 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I + D E LFN Sbjct: 155 GIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLIDTYINDPQEKHMLFNAVE 214 Query: 151 EVPSITAKANWALQY 165 +P++ KA WA+++ Sbjct: 215 TLPAVKRKAEWAMRW 229 >gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum] gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum] Length = 374 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+KY A + W EV + DL WK+K L DER I L FFA+S+ Sbjct: 67 VFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWKNK--LNSDERYFISHVLAFFAASD 124 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + + E LFN Sbjct: 125 GIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLIETYISEPQEKEFLFNAIE 184 Query: 151 EVPSITAKANWAL 163 +P + KA+WAL Sbjct: 185 TLPCVKKKADWAL 197 >gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus] gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus] Length = 351 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 6/158 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W Y A + W EV + DL W Sbjct: 21 ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + +I + D + LFN +P + KA+WAL++ Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 175 >gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++L+ +D L P+ Y W+ Y A + W E+ + DL K L D+E+ Sbjct: 29 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNDNEKH 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 86 FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF+ +P++ KA WA ++ +S Sbjct: 146 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS 179 >gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax SaI-1] gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative [Plasmodium vivax] Length = 349 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++L+ +D L P+ Y W+ Y A + W E+ + DL K L D+E+ Sbjct: 30 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNDNEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF+ +P++ KA WA ++ +S Sbjct: 147 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 392 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 17/186 (9%) Query: 2 ANNTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNN 52 A + + P+ AG + + D + NA + Q L P++Y W KY + Sbjct: 43 AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG-- 217 Query: 170 SSPSFH 175 SS SF Sbjct: 218 SSASFQ 223 >gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus scrofa] Length = 351 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 44 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NRLKSDEKYFISHILAFFAASD 100 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKQREFLFNAIE 160 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 161 TMPYVKKKADWALRW 175 >gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus norvegicus] gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus norvegicus] Length = 351 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + +I + D + LFN +P + KA+WAL++ Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 175 >gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter hepaticus ATCC 51449] gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC 51449] Length = 349 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 3/138 (2%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +V D+++ + + L +KY WA+ + N W P EV M D + Sbjct: 19 ESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPDKRDYNG-- 76 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT E+L R L +SL NN++ + ++++PE L+RQA+EEA+HS ++ Sbjct: 77 GLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEALHSQSYA 136 Query: 133 YIITSLGLDEGELFNMYR 150 ++ S+ + E++NM+R Sbjct: 137 VMVESISANTDEIYNMWR 154 >gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1] Length = 329 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W+ Y A + W EV + DL W N L DE+ IK L FFA+S+ Sbjct: 22 ILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLNKDEQFFIKHVLAFFAASD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I + D E LFN Sbjct: 79 GIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLIETYVNDSAEKDSLFNAIE 138 Query: 151 EVPSITAKANWALQY 165 +P++ KA WA+++ Sbjct: 139 TLPAVRRKAEWAMRW 153 >gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1] gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1] Length = 333 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y WE Y A + W EV + DL W+++ LT+ ER I L FFA S+ Sbjct: 22 LFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREFISHILAFFAGSD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V +N++ + L+ PE + Q E VHS + +I D + LFN Sbjct: 80 GIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRDPQRKHMLFNAID 139 Query: 151 EVPSITAKANWALQY 165 VPSI KA W +++ Sbjct: 140 TVPSIRKKAQWVIRW 154 >gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga hutchinsonii ATCC 33406] gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga hutchinsonii ATCC 33406] Length = 324 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ W Y + W E+ + DL W + L D ER I L FFA+S+ Sbjct: 18 LFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDWAN---LNDGERHFISHVLAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + PE + + Q E +HS T+ +I + D E LFN Sbjct: 75 GIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEKDRLFNAID 134 Query: 151 EVPSITAKANWALQYTQTLS 170 VP + KA+WAL++ S Sbjct: 135 TVPCVKKKADWALRFIDNGS 154 >gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] Length = 397 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N +TD ER + L FFA+S+ Sbjct: 83 LFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDWD--NRMTDPERHFVSHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + E R + Q E +HS T+ +I + + E E LFN Sbjct: 141 GIVNENLVERFSAEVQATEARCFYGFQIMMENIHSETYSLLIDTY-IREPERRDFLFNAI 199 Query: 150 REVPSITAKANWALQY 165 VP + KA+WAL++ Sbjct: 200 ETVPVVKQKADWALRW 215 >gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis] Length = 351 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 44 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASD 100 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 160 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 161 TMPYVKKKADWALRW 175 >gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos saltator] Length = 344 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 6/156 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72 ++ N D + +L + + P++Y W+ Y A + W EVP+ D W+ K Sbjct: 10 KEEFNPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEEK- 68 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DER I L FFA+S+ +V N++ + + E R + Q E +HS + Sbjct: 69 -LNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYS 127 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 +I + D E LFN +P +T KANWAL + Sbjct: 128 LLIETYISDLKEKDFLFNAIETLPCVTKKANWALNW 163 >gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus] gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus] Length = 313 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 6/144 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D + SK L DDER IK L FFA+++ Sbjct: 8 LFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDFTSK--LNDDERYFIKHVLAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + +++ E + + +Q E VH+ + +I L DE E L N + Sbjct: 66 SIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLNAFE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSF 174 +P + K +WA+++ + S+ +F Sbjct: 126 RMPCVRKKTDWAMKWINS-STATF 148 >gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV] gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura NPV] Length = 333 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 6/157 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N+ D+ +L + P++Y W Y A + W EV + DL+ W S L + Sbjct: 8 NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDWDS---LKES 64 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+V + + E R + Q E VHS + +I + Sbjct: 65 ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E LFN +P+I KA W++++ ++ ++ Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKWIKSATA 161 >gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis] Length = 197 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V ++ +L D + P+KY WE Y A + W EV + D W++ LT DE Sbjct: 8 VAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWEA---LTADE 64 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 65 RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 124 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQY 165 D E LF+ +P + KA WAL++ Sbjct: 125 IKDPDEKNRLFHAIETIPCVAKKAEWALRW 154 >gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus floridanus] Length = 343 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 11/168 (6%) Query: 5 TGLSPIQAGEK-----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 +GLS +A +K N + + +L + + P++Y W+ Y A + W EV Sbjct: 40 SGLSKTKAVQKVQLKEEFNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEV 99 Query: 60 PMQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 P+ D W+ K L DER I L FFA+S+ +V N++ + + E R + Sbjct: 100 PLHKLDKKDWEEK--LNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYG 157 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 Q E +HS + +I + D E LFN +PS+ KANWAL Sbjct: 158 FQIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWAL 205 >gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 353 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 46 IFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHVLAFFAASD 102 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 103 GIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEKRDFLFNAIE 162 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA+WAL++ + S Sbjct: 163 TMPCVKKKADWALKWIEDRES 183 >gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] Length = 339 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 5/138 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W Y +A + W EV + D W +K L + ER IK L FFAS++ Sbjct: 10 ILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDWCTK--LNERERFFIKHILAFFASAD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 S+V N++ + + E R + +Q E VHS + +I +E EL N + Sbjct: 68 SIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLNAFE 127 Query: 151 EVPSITAKANWALQYTQT 168 +V + KA WAL++T++ Sbjct: 128 DVKCVRKKAQWALKWTES 145 >gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y W Y + W E+ + DL+ W K L DER I L FFA ++ Sbjct: 15 LFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHKK--LNPDERHFISMVLAFFAGAD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 +V N+ R ++ PE R + Q E++H T+ +I + D LF+ + Sbjct: 73 GIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKVRERLFSAHA 132 Query: 151 EVPSITAKANWALQYTQTLSS 171 VPS+ KA+WA +Y + +S Sbjct: 133 TVPSVERKASWAQRYIGSKAS 153 >gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] Length = 377 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + +D+ +L L P++Y W Y A + W E+ + D+ W + L D Sbjct: 57 IRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDMRDWTER--LDD 114 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER IK L FFA+S+ +V N+V + E R + Q E +HS T+ +I Sbjct: 115 NERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMENIHSETYSLLID 174 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + D E LF +P I KA+WAL++ SS Sbjct: 175 TYIKDPQERDHLFAAIETIPCIKRKADWALRWISDKSS 212 >gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis] gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis] Length = 386 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 53 TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L DER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQY 165 S + +I + D G LFN +P + KA+WAL++ Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRW 210 >gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta] gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta] Length = 393 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSVLIDTYIRDPNQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P++ KA+WAL + + S+ Sbjct: 203 TMPAVKRKADWALSWISSKSA 223 >gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small chain B; AltName: Full=Ribonucleoside-diphosphate reductase R2B subunit; AltName: Full=Ribonucleotide reductase small subunit B gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana] Length = 333 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 5/148 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D W+ N LT+DER Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIK 123 Query: 141 DEGE---LFNMYREVPSITAKANWALQY 165 D E LF +P +T KA WA+++ Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKW 151 >gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis] gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis] Length = 393 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W LTD+ER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPQERDYLFNAVE 202 Query: 151 EVPSITAKANWALQYTQT 168 +P++ KA+WAL + + Sbjct: 203 TMPAVKRKADWALSWISS 220 >gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545] Length = 322 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K+ W+ Y A + W E+ + DL W LT+ E+ I Sbjct: 1 MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ ++ + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117 Query: 144 E---LFNMYREVPSITAKANWALQYTQT 168 + L VP++ KA WAL++ Q+ Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQS 145 >gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis] gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis] Length = 386 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K ++D+ +L + P++Y W+ Y A + W EV + DL Sbjct: 53 TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 S + +I + D E LFN +P + KA+WAL + Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHW 210 >gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Meleagris gallopavo] Length = 353 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 46 IFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKPDEKYFISHILAFFAASD 102 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 103 GIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEKRDFLFNAIE 162 Query: 151 EVPSITAKANWALQYTQ 167 +P + KA+WAL++ + Sbjct: 163 TMPCVKKKADWALKWIE 179 >gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y + W E+ + DL W++ L+D++R I L FFA+S+ Sbjct: 27 MFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHFISHVLAFFAASD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ +I + D E +F Sbjct: 84 GIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKDPAEKDKIFRAIE 143 Query: 151 EVPSITAKANWALQY 165 VPS+ KA WAL + Sbjct: 144 TVPSVRKKAEWALSW 158 >gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni] gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni] Length = 395 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W LTD+ER I L FFA+S+ Sbjct: 88 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 144 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 145 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSILIDTYIRDPQERDYLFNAVE 204 Query: 151 EVPSITAKANWALQYTQT 168 +P++ KA+WAL + + Sbjct: 205 TMPAVKRKADWALSWISS 222 >gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] Length = 422 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N + D+ER I L FFA+S+ Sbjct: 98 LFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRMNDNERHFISHVLAFFAASD 155 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS T+ +I S D + LF+ Sbjct: 156 GIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSETYSLLIDSYIKDPAQREYLFDAIE 215 Query: 151 EVPSITAKANWALQY 165 +P I KA WAL++ Sbjct: 216 TIPCIKRKAEWALKW 230 >gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 388 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 17/185 (9%) Query: 3 NNTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNH 53 N + P+ AG + + D NA + Q L P++Y W KY + Sbjct: 40 ENLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCI 99 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 100 WTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEA 156 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ S Sbjct: 157 RAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG--S 214 Query: 171 SPSFH 175 S SF Sbjct: 215 SASFQ 219 >gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella succinogenes DSM 1740] Length = 341 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 3/133 (2%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+++++ + + +L +KY WA+ + N W P EV M D + GLT Sbjct: 16 VNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDKRDYNG--GLTPA 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+L R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ S Sbjct: 74 EKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVES 133 Query: 138 LGLDEGELFNMYR 150 + + E++ M+R Sbjct: 134 ISANTDEIYEMWR 146 >gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] Length = 325 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ + + LLP+KY W+ Y A ++ W EV + D+ W N ER I Sbjct: 10 LLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNA---KERHFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+V + E R + Q E +HS + +I + D Sbjct: 67 YVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDND 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LF+ R +PS+ KA+WA++ W + + S TR + F C Sbjct: 127 EKNFLFDAIRTIPSVKEKADWAIR------------WIEDKNSDFATRLVAFAC 168 >gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] Length = 348 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E + +V D+++ + + L +KY WA+ + + N W P EV + D + + Sbjct: 18 ESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNLNGDKRDYA--D 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT E+ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ Sbjct: 76 GLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYA 135 Query: 133 YIITSLGLDEGELFNMYR 150 ++ S+ + E++ M+R Sbjct: 136 VMVESISANTDEIYEMWR 153 >gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 409 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y + W E+ + DL W + L D+ER I L FFA ++ Sbjct: 96 LFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFFAGAD 153 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ R ++ PE R + Q E +H T+ +I S D + LF + Sbjct: 154 GIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLFAAHT 213 Query: 151 EVPSITAKANWALQYTQTLSS 171 +VPS+ KA WA +Y + +S Sbjct: 214 KVPSVEKKARWAQRYIGSDAS 234 >gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius] Length = 246 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W S L D+ER I L FFA+S+ Sbjct: 13 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS---LKDEERYFISHVLAFFAASD 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 70 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERDFLFNAIE 129 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL + Sbjct: 130 TMPCVKKKADWALNW 144 >gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa] gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa] Length = 329 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE Sbjct: 4 IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWEN---LTPDE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V NI + + E R + Q E +HS + ++ + Sbjct: 61 KHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQ 167 D E LF+ VP + KA WAL++ Sbjct: 121 IKDSTEKNRLFHAIETVPCVAKKAEWALRWID 152 >gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] Length = 387 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y A + W EV + D W S L D+ER I L FFA+S+ Sbjct: 80 IFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHWDS---LKDEERYFISHVLAFFAASD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 137 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERDYLFNAIE 196 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL + Sbjct: 197 TLPCVKRKADWALNW 211 >gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 340 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D+ W+S L++ E+ I L FFA+S+ Sbjct: 31 MFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D E LFN Sbjct: 88 GIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 147 Query: 151 EVPSITAKANWALQYTQT 168 + + KA WAL + Q+ Sbjct: 148 SISCVAGKAKWALDWIQS 165 >gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp. NBC37-1] gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] Length = 339 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +L +KY WA+ + NN W P EV M D+ +K LTD E+ + L Sbjct: 30 ELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVNDYKR---LTDAEKQAYDKVLAQLIFM 86 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +SL NNI+ + ++ PE L+RQAFEEA+HS ++ ++ S+ + E++ ++R Sbjct: 87 DSLQTNNIIDNLNPFITAPEVNLILVRQAFEEALHSQSYAVMVDSISTNSEEIYELWRRD 146 Query: 153 PSITAKANWALQYTQTLSS 171 + +K + + + LS Sbjct: 147 MKLKSKNDAIAKVYEELSE 165 >gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] Length = 310 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FFA SE Sbjct: 9 LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFAQSE 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 ++ N++ Y + E R +L QAF E +H+ T+ + + D E LFN Sbjct: 66 GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLFNAIE 125 Query: 151 EVPSITAKANWALQYTQT 168 VP++ KA W +++ + Sbjct: 126 NVPTVKRKAEWVMKWISS 143 >gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] Length = 310 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FFA SE Sbjct: 9 LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFAQSE 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE-LFNMYR 150 ++ N++ Y + E R +L QAF E +H+ T+ + + ++E E LFN Sbjct: 66 GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERLFNAIE 125 Query: 151 EVPSITAKANWALQYTQT 168 VP++ KA W +++ + Sbjct: 126 NVPTVKRKAEWVMKWISS 143 >gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba] gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba] Length = 393 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P++ KA+WAL + + S+ Sbjct: 203 TMPAVKRKADWALSWISSKSA 223 >gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small subunit gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster] gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct] gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct] Length = 393 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P++ KA+WAL + + S+ Sbjct: 203 TMPAVKRKADWALSWISSKSA 223 >gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia] gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans] gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia] gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans] Length = 393 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P++ KA+WAL + + S+ Sbjct: 203 TMPAVKRKADWALSWISSKSA 223 >gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] Length = 323 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W+ Y A + W EV + D+ W++K L DER I L FFA+S+ Sbjct: 15 IFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQNK--LNKDERYFISHVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + +I + D E L Sbjct: 73 GIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIKDPKEKDHLLRAIE 132 Query: 151 EVPSITAKANWALQYTQT 168 +P + KA+WAL++ ++ Sbjct: 133 TIPCVGKKADWALEWIES 150 >gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299] gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299] Length = 324 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 6/148 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K W+ Y A + W E+ + D W + L D+E+ I Sbjct: 1 MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ +I + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117 Query: 142 -EGELFNMYREVPSITAKANWALQYTQT 168 + LF VP++ KA WAL++ Q+ Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQS 145 >gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis] gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 378 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W++ L Sbjct: 52 KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWEA---L 108 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 I + D E LFN +P + KA WAL++ +P Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWISDREAP 209 >gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus siliculosus] Length = 504 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ W+ Y A + W EV + D W++ LT +E+ I L FFA+S+ Sbjct: 193 LFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWEA---LTGNEQHFISMVLAFFAASD 249 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E++H + ++ + D+ E LFN Y Sbjct: 250 GIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKQERDNLFNAYN 309 Query: 151 EVPSITAKANWALQY 165 ++P + KA+WA+++ Sbjct: 310 DIPCVKQKADWAMRW 324 >gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 414 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N L D+ER I L FFA+S+ Sbjct: 95 LFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NKLNDNERHFISHVLAFFAASD 152 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS T+ +I + D + LF+ Sbjct: 153 GIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSETYSLLIDTYIKDPAQRDYLFDAVD 212 Query: 151 EVPSITAKANWAL 163 +P I KA+WAL Sbjct: 213 TIPCIKKKADWAL 225 >gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae] gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae] Length = 393 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P++ KA+WAL + + S+ Sbjct: 203 TMPAVKRKADWALAWISSKSA 223 >gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit; AltName: Full=p41 gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula solidissima] Length = 384 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP++Y W+ Y A + W EV + D+A W+S L +E+ I L FFA+S+ Sbjct: 74 VLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASD 130 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 131 GIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIE 190 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA+WA+++ SS Sbjct: 191 TMPCVKEKADWAMRWINDDSS 211 >gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva strain Muguga] gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative [Theileria parva] Length = 308 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 6/145 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+ Y WE Y A + W E+ D W + L DER Sbjct: 7 EEFLLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHW---HRLNKDERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I + Sbjct: 64 FITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVK 123 Query: 141 DEGE---LFNMYREVPSITAKANWA 162 DE E LF + ++ KANWA Sbjct: 124 DEAEKRRLFMAIETIDAVKDKANWA 148 >gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Pongo abelii] Length = 449 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 126 DVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 243 YIKDPKEREFLFNAIETLPCVKKKADWALRW 273 >gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Anolis carolinensis] Length = 414 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W+ Y A + W EV + D W N L +E+ I L FFA+S+ Sbjct: 107 IFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NKLKSEEKYFISHILAFFAASD 163 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D E LFN Sbjct: 164 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEERDFLFNAIE 223 Query: 151 EVPSITAKANWALQYTQ 167 +P + KA+WAL++ + Sbjct: 224 TMPCVKKKADWALRWIR 240 >gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2] Length = 387 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ W Y A ++W E+ D+ W NGL+D+E+ IK L FFA S+ Sbjct: 85 VFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFIKYILAFFAGSD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + E R + QA E VH T+ +I ++ +LF + Sbjct: 142 GIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSSTEKNQLFEAIQ 201 Query: 151 EVPSITAKANWALQY 165 +P I KA WA+++ Sbjct: 202 TIPCIERKAKWAMKW 216 >gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] Length = 354 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 5/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + L P++Y WE Y A + W EV DL + K L ++ER Sbjct: 24 DEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTGDLYDFDHK--LKEEERR 81 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E VHS + ++ Sbjct: 82 FIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAMENVHSEMYSVLLDHYVR 141 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E LFN + + ++ KA+WAL++ + +S Sbjct: 142 DPAERRQLFNAIQTIATVGKKADWALRWISSSNS 175 >gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis] Length = 345 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 7 LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57 + P+ AG + + D + NA + Q L P++Y W KY + W Sbjct: 1 MKPVAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 60 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Sbjct: 61 EIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFY 117 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ ++ + D E L + + +P I KA WA+++ SS SF Sbjct: 118 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG--SSASF 175 Query: 175 H 175 Sbjct: 176 Q 176 >gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus] Length = 390 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 ERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 184 YIKDPKEREYLFNAIETMPCVKKKADWALRW 214 >gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] Length = 347 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D+NQ+ KY WA + + + +N W P EV M D + L+ E++ R L Sbjct: 38 DLNQI---KYQWAHKIWKTMLHNTWFPEEVSMHGDKTHYLK---LSTQEKIGYDRALAQL 91 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +SL NN++ I +++PE L+RQA+EEA+HSH++ ++ S+ + E++ M+ Sbjct: 92 IFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHSYAVMVESISANSDEIYEMW 151 Query: 150 REVPSITAKANWALQYTQTLS 170 R ++ K + Q L+ Sbjct: 152 RTDEALKNKNDCVAQVYMDLA 172 >gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] Length = 333 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 5/148 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D W+ N L++DER Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSNDERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIK 123 Query: 141 DEGE---LFNMYREVPSITAKANWALQY 165 D E LF +P +T KA WA+++ Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKW 151 >gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53 inducible) [Ornithorhynchus anatinus] Length = 401 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W N L +E+ I L FFA+S+ Sbjct: 94 IFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKSEEKYFISHILAFFAASD 150 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 151 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIKDPKKREFLFNAIE 210 Query: 151 EVPSITAKANWALQY 165 +P + KA+W+L++ Sbjct: 211 TMPFVKKKADWSLRW 225 >gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] Length = 313 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D + K LTD+ER I++ L FFA+++ Sbjct: 8 LFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 S+V NI+ + R + E + + +Q E +H+ + +I +L DE L N + Sbjct: 66 SIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLNGFE 125 Query: 151 EVPSITAKANWALQYTQ 167 +P + KA WA++Y + Sbjct: 126 SMPCVRRKAEWAMKYIE 142 >gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 392 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 17/186 (9%) Query: 2 ANNTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNN 52 A + + P+ G + + VD NA + Q L P++Y W KY + Sbjct: 43 AEDLVMKPVAPGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIG-- 217 Query: 170 SSPSFH 175 SS SF Sbjct: 218 SSASFQ 223 >gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus] gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus] Length = 322 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 6/147 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W+ Y A + W P EV + DL W + LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDW---HILTSDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWA 162 +D E LF + I KA W Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWV 144 >gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Ailuropoda melanoleuca] Length = 393 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 70 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 126 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 127 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 186 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 187 YIKDSKEREFLFNAIETMPCVKKKADWALRW 217 >gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus] gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus] gi|301134541|gb|ADK63655.1| M015L [Myxoma virus] Length = 322 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 6/147 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWA 162 +D E LF + I KA W Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWV 144 >gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo sapiens] Length = 449 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 243 YIKDPKEREFLFNAIETMPCVKKKADWALRW 273 >gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens] gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens] Length = 449 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 243 YIKDPKEREFLFNAIETMPCVKKKADWALRW 273 >gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] Length = 344 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KRM+N + ++N +KY W + Y A NN W+P E+ + DL K N LT+DER Sbjct: 20 KRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDL---KDYNKLTNDERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ ++ Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQAFQEAVHSQSYSYMLDTICS 135 Query: 141 DE----------------------GELFNMYREVPS-----ITAKANWALQYTQTLSSPS 173 E GEL+N + E P+ T AN+ L+ S Sbjct: 136 PEKRNEILYQWKDDKILLERNKFIGELYNNFLEAPTQENLIKTIMANYILEGIYFYSGFM 195 Query: 174 FHYWNKRRRSRI--LTRSLRFLCR 195 F Y N R ++ + +R++ R Sbjct: 196 FFY-NLERNGKMPGSAQEIRYINR 218 >gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays] gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P++Y WE Y A + W EV + D W + L+ DER I Sbjct: 17 LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + E R + Q E +HS + ++ + G Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIRDGT 134 Query: 141 DEGELFNMYREVPSITAKANWALQYTQ 167 ++ LF VP++ KA+WA+++ Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWID 161 >gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] Length = 345 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA++ Y + NN W+P E+P+ DD + + L+DDER + L F +SL+ Sbjct: 36 IKYEWAYKLYRAMMNNFWIPEEIPLADDA---RQYDLLSDDERRSYNKVLSFLIFMDSLL 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +N+ I +++ PE L AF+EAVHS ++ Y++ S+ Sbjct: 93 THNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSV 133 >gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y + W E+ + DL W++ L+D++R I L FFA+S+ Sbjct: 27 MFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHFISHVLAFFAASD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + PE R + Q E +HS T+ +I + D + ++F Sbjct: 84 GIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKDPEQKDKIFRAIE 143 Query: 151 EVPSITAKANWALQY 165 VPS+ KA WAL + Sbjct: 144 TVPSVRKKAEWALSW 158 >gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis] Length = 388 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D+A W N L D+ER I L FFA+S+ Sbjct: 79 LFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NRLNDNERHFISHVLAFFAASD 135 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D + LFN Sbjct: 136 GIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSLLIDTYISDASQRQFLFNAIE 195 Query: 151 EVPSITAKANWALQY 165 +P + KANWAL + Sbjct: 196 TLPCVAKKANWALNW 210 >gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] Length = 324 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W E+ + DL W++K L+DDER +K L FFA+S+ Sbjct: 17 LFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWETK--LSDDERHFVKHVLAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D+ E LFN Sbjct: 75 GIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTYIKDQKEKNHLFNALD 134 Query: 151 EVPSITAKANWALQY 165 + + KA+WAL++ Sbjct: 135 TIDCVRKKADWALRW 149 >gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 2 [Anolis carolinensis] Length = 390 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 67 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WA+++ Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRW 214 >gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain H] gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium knowlesi strain H] Length = 349 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++L+ +D L P+ Y W+ Y A + W E+ + DL K L ++E+ Sbjct: 30 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNENEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF+ +P++ KA WA ++ +S Sbjct: 147 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480] gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480] Length = 405 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 8/141 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY E Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKY---HEMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 144 GIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 203 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WA+++ Q S Sbjct: 204 TIPCIRKKADWAIRWIQDKDS 224 >gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata] Length = 387 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W EV + D W+ K L E+ I L FFA+S+ Sbjct: 72 LFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEEK--LKPQEKYFISHVLAFFAASD 129 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V N+V + + PE R + Q E +HS + +I +L +++ LFN Sbjct: 130 GIVNENLVECFSQEVQLPEARAFYGFQIAIENIHSEMYSLLIDTLIKDPIEKSNLFNAIE 189 Query: 151 EVPSITAKANWALQY 165 +P + KA WAL++ Sbjct: 190 TMPCVQKKAVWALKW 204 >gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 388 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 7 LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57 + P+ AG + + D NA + Q L P++Y W KY + W Sbjct: 44 MKPVAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 103 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Sbjct: 104 EIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFY 160 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ ++ + D E L + + +P I KA WA+++ SS SF Sbjct: 161 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG--SSASF 218 Query: 175 H 175 Sbjct: 219 Q 219 >gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521] gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521] Length = 424 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 7/136 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W+ Y A + W E+ + DL W +K L D+ER I L FFA+S+ Sbjct: 106 LFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDWDNK--LNDNERHFISHVLAFFAASD 163 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + E R + Q E +HS T+ +I + + E E LF+ Sbjct: 164 GIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSETYSLLIDTY-IREPEQREYLFDAV 222 Query: 150 REVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 223 ETIPVVKQKADWALRW 238 >gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 369 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA++ Y + NN W+P E+P+ DD + + L+DDER + L F +SL+ Sbjct: 60 IKYEWAYKLYRAMMNNFWIPEEIPLADDA---RQYDLLSDDERRSYNKVLSFLIFMDSLL 116 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +N+ I +++ PE L AF+EAVHS ++ Y++ S+ Sbjct: 117 THNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSV 157 >gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus] Length = 411 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 88 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 144 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 145 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 204 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 205 YIKDPKEREYLFNAIETMPCVKKKADWALRW 235 >gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 354 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 7 LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57 + P+ AG + + D NA + Q L P++Y W KY + W Sbjct: 10 MKPVAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 69 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Sbjct: 70 EIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFY 126 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ ++ + D E L + + +P I KA WA+++ SS SF Sbjct: 127 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIG--SSASF 184 Query: 175 H 175 Sbjct: 185 Q 185 >gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus] gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Oxidizing Conditions. A Fully Occupied Dinuclear Iron Cluster. gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Reducing Conditions. A Fully Occupied Dinuclear Iron Cluster And Bound Acetate. gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus] gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus] gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus] gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus] gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus] gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus] gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus] gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus] gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus] gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus] gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus] Length = 390 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 184 YIKDPKEREYLFNAIETMPCVKKKADWALRW 214 >gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 1 [Anolis carolinensis] Length = 394 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 71 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WA+++ Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRW 218 >gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo sapiens] gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens] gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens] gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens] gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|62702173|gb|AAX93099.1| unknown [Homo sapiens] gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens] gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct] Length = 389 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 66 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 183 YIKDPKEREFLFNAIETMPCVKKKADWALRW 213 >gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis] gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis] Length = 394 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W LTD+ER I L FFA+S+ Sbjct: 87 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQRDYLFNAIE 203 Query: 151 EVPSITAKANWALQYTQT 168 +P++ KA+WAL + + Sbjct: 204 TMPAVKRKADWALSWISS 221 >gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 9 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 65 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 66 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 125 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 126 YIKDPKEREFLFNAIETMPCVKKKADWALRW 156 >gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus] gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus 6918VP60-T2] Length = 322 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 6/147 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS- 137 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 138 -LGLDEGE-LFNMYREVPSITAKANWA 162 + L E E LF + I KA W Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWV 144 >gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 388 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 8/145 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 80 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVA---LNDGERHFIKHVLAFFAGSD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 137 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFH 175 +P I KA WA+++ SS SF Sbjct: 197 TIPCIQKKAEWAVRWIG--SSASFQ 219 >gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis] Length = 366 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P++ ++ ++ +L + LLPL+Y W Y A + W EV ++ D Sbjct: 33 TPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRKDAND 92 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W L DE+ I L FFA+S+ +V N+V + + E R + Q E VH Sbjct: 93 WAK---LNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAIENVH 149 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 S + +I + D E LFN +P + KA+WAL++ SP Sbjct: 150 SEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWIGDRQSP 197 >gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis] Length = 389 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 66 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 183 YIKDPKEREFLFNAIETMPCVEKKADWALRW 213 >gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 392 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 8/145 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 84 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVA---LNDGERHFIKHVLAFFAGSD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 141 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFH 175 +P I KA WA+++ SS SF Sbjct: 201 TIPCIQKKAEWAVRWIG--SSASFQ 223 >gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain [Theileria annulata] gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain, putative [Theileria annulata] Length = 322 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 6/145 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+ Y WE Y A + W E+ D W + L DER Sbjct: 16 EEFILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHW---HKLNKDERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I + Sbjct: 73 FITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVK 132 Query: 141 DEGE---LFNMYREVPSITAKANWA 162 DE E LF + ++ KANWA Sbjct: 133 DEAEKRRLFMAIETIDAVKDKANWA 157 >gi|194690416|gb|ACF79292.1| unknown [Zea mays] gi|194704028|gb|ACF86098.1| unknown [Zea mays] gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|223943167|gb|ACN25667.1| unknown [Zea mays] Length = 339 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P++Y WE Y A + W EV + D W + L+ DER I Sbjct: 17 LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + E R + Q E +HS + ++ + G Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGT 134 Query: 141 DEGELFNMYREVPSITAKANWALQYTQ 167 ++ LF VP++ KA+WA+++ Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWID 161 >gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis elegans] gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 381 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ ML + + PLK+ W Y A + W EV + D+ W+ NG DE+ Sbjct: 61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 117 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+ + E R + Q E +HS + +I + Sbjct: 118 FISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIR 177 Query: 141 DEGE---LFNMYREVPSITAKANWALQY 165 DE E LFN E I KA+WAL++ Sbjct: 178 DETERNTLFNAVDEFEFIKKKADWALRW 205 >gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 388 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 8/145 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 80 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 137 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFH 175 +P I KA WA+++ SS SF Sbjct: 197 TIPCIQRKAEWAVRWIG--SSASFQ 219 >gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] Length = 328 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P Y WA++ ++++ HW+ TEVPM +D+ W KN LTD ER + + FF Sbjct: 11 NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDW--KNVLTDGERDFLTKVFRFFTQ 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V++ V PE R L A EAVH + ++I ++G+ E ++N + + Sbjct: 69 GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPE-TVYNEFLQ 127 Query: 152 VPSITAKANW 161 ++ K ++ Sbjct: 128 YEAMAEKHDF 137 >gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca mulatta] Length = 704 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 411 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 467 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 468 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 527 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 528 YIKDPKEREFLFNAIETMPCVKKKADWALRW 558 >gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 327 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P Y WA++ ++++ HW+ TEVPM +D+ W KN LTD ER + + FF Sbjct: 10 NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDW--KNVLTDGERDFLTKVFRFFTQ 67 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V++ V PE R L A EAVH + ++I ++G+ E ++N + + Sbjct: 68 GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPE-TVYNEFLQ 126 Query: 152 VPSITAKANW 161 ++ K ++ Sbjct: 127 YEAMAEKHDF 136 >gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa] Length = 355 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 49 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKPE 105 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 106 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 165 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 166 YIKDSKEREFLFNAIETMPCVKKKADWALRW 196 >gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 392 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 8/145 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 84 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 141 GIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFH 175 +P I KA WA+++ SS SF Sbjct: 201 TIPCIQKKAEWAVRWIG--SSASFQ 223 >gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 379 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A + W E+ + DL W + LTD+ER IK L FFA+S+ Sbjct: 72 LFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDW---SKLTDNERHFIKHVLAFFAASD 128 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V N+ + + PE R + Q E +HS + +I + +++ L Sbjct: 129 GIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIE 188 Query: 151 EVPSITAKANWALQY 165 +P +T KA+WA+++ Sbjct: 189 TIPCVTKKAHWAIKW 203 >gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus] Length = 386 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 184 YIKDSKEREYLFNAIETMPCVKKKADWALRW 214 >gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] Length = 362 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 17/162 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y + W E+ + DL W+ + + D+ER I L FFA+S+ Sbjct: 55 LFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEER--MNDNERHFISHVLAFFAASD 112 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E VHS T+ +I + D + L N Sbjct: 113 GIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSETYSLLIDTYIRDPAQRTFLLNAVE 172 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +P + KA WAL+ W RRS R + F Sbjct: 173 TIPCVRKKAEWALR------------WIADRRSSFAIRLVAF 202 >gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] Length = 389 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 66 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKSE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 183 YIKDSKEREFLFNAIETMPCVKKKADWALRW 213 >gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula] Length = 206 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 8/144 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D+ W + L+D E+ I L FFA+S+ Sbjct: 31 MFPVRYKQLWEMYKKAEASFWTAEEVDLSYDVQHWAT---LSDSEKHFISHVLAFFATSD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D E LFN Sbjct: 88 GIVLENLAARFLNDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDSREKHKLFNAIE 147 Query: 151 EVPSITAKANWALQYTQTLSSPSF 174 +P + KA WAL + SS SF Sbjct: 148 NLPCVARKAEWALSWIN--SSTSF 169 >gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Equus caballus] Length = 425 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 102 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPE 158 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 159 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 218 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LFN +P + KA+WAL++ Sbjct: 219 YIKDSKEREFLFNAIETMPCVKKKADWALRW 249 >gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 322 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y + Y A W E+ DL K L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDL---KDFEKLNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ ++ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSS 171 E E LF+ +P++ KA WA ++ +S Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS 151 >gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb18] Length = 325 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W+ Y A + W EV + DL W N L DDER I L FFA+S+ +V N+V Sbjct: 12 WQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVE 69 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 + PE R + Q E +HS T+ +I + + + LF+ +P I KA Sbjct: 70 RFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKA 129 Query: 160 NWALQYTQTLSS 171 +WA+++ + S Sbjct: 130 DWAIRWIEDKES 141 >gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] Length = 309 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P+K+ WA NN W P V M DD+A S N L +R M + L F ++ + + Sbjct: 5 PMKHTWAKGILDRMENNTWFPHVVNMADDVA---SYNRLNAADRFMFDKALAFLSNLDGI 61 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 NNI I +H+++PE L RQA+EEA+H ++ II ++ LD ++ + + Sbjct: 62 QFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDGLL 121 Query: 156 TAKANWALQYTQTLS 170 K + L+ ++ L Sbjct: 122 AQKNQFILKQSRLLG 136 >gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] Length = 323 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D +LP+ Y W+ Y + W E+ + DL W + L D ER Sbjct: 4 ENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDWAN---LNDGER 60 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 61 HFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLIDTYV 120 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 D E LF+ V + KA WAL++ + S Sbjct: 121 KDPVEKDRLFHAIETVECVKKKAEWALRWIENGS 154 >gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens] Length = 393 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K W Y A + W EV + D W+ L + ER + R L FFA+S+ Sbjct: 84 LFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE-- 151 +V N+V + ++ PE R + Q E VH + ++ + D GE + R Sbjct: 141 GIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREALTRAHD 200 Query: 152 -VPSITAKANWALQYTQT 168 +P + AKA+WA+++T + Sbjct: 201 LMPCVKAKADWAMKWTAS 218 >gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + D+ +L +LP++Y W+ Y A + W EV + DL W++ L +E Sbjct: 84 IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 141 RYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 D E LFN +P + KA W+L++ +P Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP 237 >gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 342 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D+ W++ L+ E+ I L FFA+S+ Sbjct: 32 MFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFISHVLAFFAASD 88 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D E LFN Sbjct: 89 GIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDSREKNRLFNAIE 148 Query: 151 EVPSITAKANWALQYTQTLS 170 +P + KA WAL + + S Sbjct: 149 TIPCVARKAKWALDWIHSSS 168 >gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 361 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y + W EV ++ DL W LTDDER I L FFA+S+ Sbjct: 51 IFPIIYDDIWAMYKKQEASFWNVEEVNLKSDLEDWMK---LTDDERHFISHVLAFFAASD 107 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 108 GIVNENLVERFSQEVQVTEARCFYGFQIMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIE 167 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 168 TMPCVKKKADWALKW 182 >gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] Length = 326 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ WE Y A + W E+ + D+ WKS L D ER I L FFA+S+ Sbjct: 16 LFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGERHFISHVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D E LFN Sbjct: 73 GIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKDPSERDKLFNAIE 132 Query: 151 EVPSITAKANWALQY 165 + + KA+WAL++ Sbjct: 133 HIDCVKKKADWALRW 147 >gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] Length = 341 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 ANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus] Length = 328 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 26 MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 82 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 83 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 142 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 I L DE + LFN + P+I K WA+ + Q+ Sbjct: 143 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQS 179 >gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori J99] gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter pylori J99] gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter pylori 908] gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter pylori 2018] gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter pylori 2017] Length = 341 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 ANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Gambia94/24] Length = 341 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 ANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 3 [Anolis carolinensis] Length = 391 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+S L DE+ I L FFA+S+ Sbjct: 84 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPDEKYFISHILAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 141 GIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIE 200 Query: 151 EVPSITAKANWALQY 165 +P + KA+WA+++ Sbjct: 201 TLPCVKRKADWAMRW 215 >gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori P12] gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori P12] Length = 341 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 ANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis] gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + D+ +L +LP++Y W+ Y A + W EV + DL W++ L +E Sbjct: 84 IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 141 RYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 D E LFN +P + KA W+L++ +P Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP 237 >gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 26695] gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB) [Helicobacter pylori 26695] Length = 341 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 ANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus] Length = 349 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 35 MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 91 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 92 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 151 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 I L DE + LFN + P+I K WA+ + Q+ Sbjct: 152 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQS 188 >gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] Length = 331 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 4/144 (2%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K N+ +KR L +S + P Y WA+E ++ + HW+ TEVPM +D+ WK + L Sbjct: 2 KVKNMTEKRNLLTQSR-DYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWKMR--L 58 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+ER + + FF + V++ V PE R L A EAVH + ++ Sbjct: 59 NDNERDFLTKVFRFFTQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHL 118 Query: 135 ITSLGLDEGELFNMYREVPSITAK 158 I ++G+ + ++N + + ++ AK Sbjct: 119 IETIGMPDA-IYNEFLQYEAMAAK 141 >gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] Length = 339 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 85/158 (53%), Gaps = 5/158 (3%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+D+++ + + +L +KY WA+ + NN W P EV M D +K LT+ Sbjct: 14 HVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDAVDYKY---LTE 70 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + L +SL NN++ + +++ PE L+RQ+FEEA+HS ++ ++ Sbjct: 71 MEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEALHSQSYAVMVD 130 Query: 137 SLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPS 173 S+ + E+++++R+ + K + A +Y + + PS Sbjct: 131 SISQNSEEIYDLWRKDMMLKTKNDSIAARYDELANDPS 168 >gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana) tropicalis] gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis] Length = 346 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 17/159 (10%) Query: 21 DKRMLNARSDVNQ-----------LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 DK + N SD + + P+ Y W+ Y A + W EV + DL W+ Sbjct: 15 DKNLTNGHSDEEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDLVHWE 74 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L +ER I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 75 K---LKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSE 131 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + +I + D LFN +P + KA WAL++ Sbjct: 132 MYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRW 170 >gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus] Length = 380 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 6/136 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A W E+ + D W+ GLTDDER +K L FFA+S+ Sbjct: 73 LFPIQDNEVWQMYKKAEACFWTAEELDLAHDHKDWE---GLTDDERHFVKHVLAFFAASD 129 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 130 GIVNENLASNFSSEIQLSEARCFYGFQIAIENIHSEVYSLLIDTYVKDAAEKTHLFNAME 189 Query: 151 EVPSITAKANWALQYT 166 VP + KA WAL++ Sbjct: 190 TVPCVRRKARWALRWC 205 >gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K W+ Y A + W E+ + +DL W+S L+ +ER + L FFA+S+ Sbjct: 28 LFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLKDWES---LSINERHFVSHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ +++ E R + Q E +HS T+ +I + D E L N Sbjct: 85 GIVNENLTGNFSTEVTSAEARCFYGFQIAVENIHSETYSLLIDTYIKDAQEKDHLLNAIE 144 Query: 151 EVPSITAKANWALQYTQT 168 VP + KANWAL++ Sbjct: 145 TVPCVQKKANWALRWCDA 162 >gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi] gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi] Length = 393 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W LTD+ER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMTDWVR---LTDNERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQRDYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQT 168 +P++ KA+WAL + + Sbjct: 203 TMPAVKRKADWALSWISS 220 >gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] Length = 325 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W+ Y A + W E+ + DL W N L DDER I L FFA+S+ +V N+V Sbjct: 12 WQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVE 69 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 + PE R + Q E +HS T+ +I + + + LF+ +P I KA Sbjct: 70 RFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKA 129 Query: 160 NWALQYTQTLSS 171 +WA+++ + S Sbjct: 130 DWAIRWIEDKES 141 >gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa] gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa] Length = 329 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE Sbjct: 4 IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWEN---LTPDE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 61 KHFISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 D E LF+ VP + KA WAL++ S SF Sbjct: 121 IKDSEEKNRLFHAIETVPCVAKKARWALRWID--GSESF 157 >gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] Length = 310 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y + W E+ DL LT+ E+ I+ L FFA SE Sbjct: 9 LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDL---PDLVKLTEGEKHFIRHVLAFFAQSE 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 ++ N++ Y + E R +L QAF E +H+ T+ + + D E LFN Sbjct: 66 GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLFNAIE 125 Query: 151 EVPSITAKANWALQYTQT 168 VP++ KA W +++ + Sbjct: 126 NVPTVQRKAQWVMKWISS 143 >gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] Length = 339 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 5/150 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P+++ WE Y A + W EV + D W L+ DER Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWD--EALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQ 167 D+ E LF VP++ KA+WA+++ Sbjct: 132 DDAEKDRLFRAIDTVPAVRRKADWAMRWID 161 >gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus] gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2) [shrimp white spot syndrome virus] gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus] gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus] Length = 413 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 50 MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 106 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 107 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 166 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 I L DE + LFN + P+I K WA+ + Q+ Sbjct: 167 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQS 203 >gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae] gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16] Length = 365 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PL++ W+ Y A + W EV + D+ W+ NG DE+ I R L FFA+S+ Sbjct: 58 IFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQYFISRVLAFFAASD 114 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + DE E LFN Sbjct: 115 GIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIRDEKERMKLFNAIF 174 Query: 151 EVPSITAKANWALQY 165 E I KA+WAL++ Sbjct: 175 EFEFIKKKADWALRW 189 >gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis] gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 6/154 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L + P++Y W+ Y A + W EV + DL W+S L Sbjct: 60 KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLL 176 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 I + D E LFN +P + KA+WAL++ Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRW 210 >gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase M2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 345 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 7 LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57 + P+ AG + + D + NA + Q L P++Y W KY + W Sbjct: 1 MKPVAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 60 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Sbjct: 61 EIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFY 117 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ ++ + D E L + + +P I KA W +++ SS SF Sbjct: 118 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIG--SSASF 175 Query: 175 H 175 Sbjct: 176 Q 176 >gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus] gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus] gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus] Length = 390 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L DER I L FFA+S+ Sbjct: 83 VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIE 199 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 200 TMPCVKKKADWALRW 214 >gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus norvegicus] gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus norvegicus] Length = 390 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L DER I L FFA+S+ Sbjct: 83 VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIE 199 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 200 TMPCVKKKADWALRW 214 >gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera] Length = 329 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W++ LT D Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 60 EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLES 119 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQY 165 D E LF+ +P + KA WAL++ Sbjct: 120 YIKDPKEKNRLFHAIDTIPCVAKKAQWALRW 150 >gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str. 17XNL] gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii] Length = 349 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN S+ L P+ Y W Y A + W E+ + DL K L +E+ Sbjct: 30 NEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL---KDFEKLNVNEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF+ +P+I KA WA ++ +S Sbjct: 147 DEKERLNLFHAIENIPAIKNKALWAAKWINDTNS 180 >gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group] Length = 345 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 5/150 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P++Y WE Y A + W EV + D W + L+ DER Sbjct: 20 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERH 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-- 138 + L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 78 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137 Query: 139 -GLDEGELFNMYREVPSITAKANWALQYTQ 167 G ++ LF VP++ KA+WA+++ Sbjct: 138 DGAEKDRLFRAIDTVPAVRRKADWAMRWID 167 >gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus] gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus] Length = 325 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W+ Y A + W EV + D + W L+D+E+ IK L FFA+S+ Sbjct: 18 VFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLK---LSDNEKNFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + LD E LFN Sbjct: 75 GIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134 Query: 151 EVPSITAKANWALQYTQT 168 + + KANWA ++ ++ Sbjct: 135 NMNCVKQKANWAKKWIES 152 >gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] Length = 339 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 5/150 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P+++ WE Y A + W EV + D W + L+ DER Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-- 138 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 139 -GLDEGELFNMYREVPSITAKANWALQYTQ 167 G ++ LF VP++ KA+WA+++ Sbjct: 132 DGAEKDRLFRAIETVPAVRRKADWAMRWID 161 >gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis] gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura] gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis] gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura] Length = 391 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D W LTD+ER I L FFA+S+ Sbjct: 84 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDATDWAR---LTDNERYFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + + E LFN Sbjct: 141 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIREPQERDYLFNAIE 200 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P++ KA+WA+ + + S+ Sbjct: 201 TMPAVKRKADWAMSWISSKSA 221 >gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 1 [Canis familiaris] Length = 394 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W+S L +ER I L FFA+S+ Sbjct: 87 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 203 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 204 TMPCVKKKADWALRW 218 >gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 318 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 LLP+ W+ Y A + HW E+ M D W K L D ER +K L FFA+++ Sbjct: 9 LLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNKK--LNDKERFFLKHVLAFFAAAD 66 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NI+ + + E + +Q F E VH+ + ++ D E + N Sbjct: 67 VIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRILNAIE 126 Query: 151 EVPSITAKANWALQYTQTLSS 171 + S+ KA WA ++ + S+ Sbjct: 127 HIDSVKQKAAWAQKWIENQSA 147 >gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] Length = 400 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 5/159 (3%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +Q E + ++ +L A + L P++Y +E Y A + W E+ + DL W Sbjct: 63 VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N + ++ER I R L FFA+S+ +V N+ E + + Q E +HS Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 T+ +I + D E LFN +P I KA WAL++ Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRW 219 >gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] Length = 376 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL W +GL +ER I L FFA+S+ Sbjct: 69 MFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLKPEERHFISHILAFFAASD 125 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 126 GIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLIDTYIKDPSERDRLFNAVE 185 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P I KA+WAL + S+ Sbjct: 186 TMPCIKRKADWALNWISNRSA 206 >gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] Length = 320 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W EV + DL W + LT DE+ IK L FFASS+ Sbjct: 14 IFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYFIKHILAFFASSD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIE 130 Query: 151 EVPSITAKANWA 162 + + KA+WA Sbjct: 131 TMECVKKKADWA 142 >gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] Length = 313 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D + K LTD+ER I++ L FFA+++ Sbjct: 8 LFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V NI+ + R + E + + +Q + +H+ + +I +L DE + L N + Sbjct: 66 SIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLNGFE 125 Query: 151 EVPSITAKANWALQY 165 +P + KA WA++Y Sbjct: 126 NMPCVRRKAEWAMKY 140 >gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus] Length = 274 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W EV + DL W + LT DE+ IK L FFASS+ Sbjct: 14 IFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYFIKHILAFFASSD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIE 130 Query: 151 EVPSITAKANWALQYTQT 168 + + KA+WA ++ + Sbjct: 131 TMECVKKKADWARKWISS 148 >gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] Length = 323 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 6/145 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W Y A + W EV + D+A W+ L+ DE+ I L FFA+S+ Sbjct: 16 IYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWER---LSADEKKFISTVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS T+ +I + DE E LF+ + Sbjct: 73 GIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKDERERLVLFDAIK 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFH 175 I KA+WAL++ ++SP H Sbjct: 133 NFEFIKKKADWALRWISDMTSPFAH 157 >gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] Length = 382 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ WE Y A + W EV + D W++ L ++E+ + L FFASS+ Sbjct: 75 LFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHFVSHVLAFFASSD 131 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D + ELF Sbjct: 132 GIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKDPKKKSELFRAIH 191 Query: 151 EVPSITAKANWALQYTQTLSS 171 VP++ KA+WAL + + +S Sbjct: 192 TVPTVAMKADWALHWIGSDAS 212 >gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 3 [Canis familiaris] Length = 381 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W+S L +ER I L FFA+S+ Sbjct: 87 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 203 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 204 TMPCVKKKADWALRW 218 >gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 380 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W Y A + W E+ + D+ W +K L DE+ IK L FFA+S+ Sbjct: 60 LFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWDNK--LNADEKHFIKHVLAFFAASD 117 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS + +I + + E LF+ Sbjct: 118 GIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYVREPTERAHLFDAID 177 Query: 151 EVPSITAKANWALQY 165 +P I KA+WAL + Sbjct: 178 TIPCIRKKADWALTW 192 >gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei] gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei] Length = 377 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PL++ W+ Y A + W EV + D+ W+ NG DE+ I R L FFA+S+ Sbjct: 70 IFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQYFISRVLAFFAASD 126 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + DE E LFN Sbjct: 127 GIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIRDEKERLTLFNAIF 186 Query: 151 EVPSITAKANWALQY 165 E I KA+WA+++ Sbjct: 187 EFEFIKKKADWAMKW 201 >gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus] gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus] gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus] Length = 325 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W+ Y A + W EV + D + W L+D+E+ IK L FFA+S+ Sbjct: 18 VFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLK---LSDNEKNFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + LD E LFN Sbjct: 75 GIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134 Query: 151 EVPSITAKANWALQYTQT 168 + + KANWA ++ ++ Sbjct: 135 NMNCVKQKANWAKKWIES 152 >gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi chabaudi] gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium chabaudi chabaudi] Length = 349 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN S L P+ Y W Y A + W E+ + DL K L +E+ Sbjct: 30 NEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL---KDFEKLNVNEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIHSETYSLLIDNYIR 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF+ +P+I KA WA ++ +S Sbjct: 147 DEKERLNLFHAIENIPAIKNKALWAAKWINDTNS 180 >gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] Length = 325 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E+Y A + W +E+ + D W LT++E+ IK L FFA+++ Sbjct: 15 LFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDWPK---LTENEQHFIKYILAFFATAD 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VH+ T+ ++ SL D+ E LF R Sbjct: 72 GIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVEDKDEQRNLFRAIR 131 Query: 151 EVPSITAKANWALQY 165 + SI KA+WAL++ Sbjct: 132 TIQSIKNKADWALKW 146 >gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase isoform 1 [Gallus gallus] Length = 392 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T L P Q +++ +L + P++Y W+ Y A + W EV + D Sbjct: 59 TALCPPQVAR---GAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKD 115 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E Sbjct: 116 LQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAME 172 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 +HS + +I + D E LFN +P + KA+WA+++ Sbjct: 173 NIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRW 216 >gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] Length = 329 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 6/150 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L + D + P++Y WE Y A + W EV + D W++ LT E Sbjct: 4 IPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 61 RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 120 Query: 139 GLDEGELFNMYREV---PSITAKANWALQY 165 D E ++R V P + KA WAL++ Sbjct: 121 IKDSDEKSRLFRAVETNPCVEKKAKWALRW 150 >gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 6/154 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L + P++Y W+ Y A + W EV + DL W+S L Sbjct: 60 KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 176 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 I + D E LFN +P + KA+WAL++ Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRW 210 >gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max] Length = 339 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G + + + +L +S + P++Y WE Y A + W EV + D+ W++ Sbjct: 8 GVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET-- 65 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ I L FFA+S+ +V N+ + PE R + Q E +HS + Sbjct: 66 -LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMYS 124 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 ++ + D E LFN +P + KA WAL + SS SF Sbjct: 125 LLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIH--SSTSF 167 >gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group] gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group] gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa Japonica Group] gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group] gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group] Length = 345 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P++Y WE Y A + W EV + D W + L+ DER + Sbjct: 23 LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVS 80 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D+ Sbjct: 81 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDV 140 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LF VP++ KA+WA+++ Sbjct: 141 EKDRLFRAIDTVPAVRRKADWAMRWID 167 >gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] Length = 413 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 50 MQVDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 106 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 107 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 166 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 I L DE + LFN + P+I K WA+ + Q+ Sbjct: 167 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQS 203 >gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 463 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+ Y A + W EV + DL W L ++ER Sbjct: 142 EETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDWVK---LKEEERR 198 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + E R + Q E VHS + +I + Sbjct: 199 FISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSEMYSLLIDAYIK 258 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 ++ E LF+ +P + KA+WA+++ Q+ S Sbjct: 259 EQEEKTRLFHAIDNMPCVKKKADWAIEWIQSEES 292 >gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase isoform 2 [Gallus gallus] Length = 384 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+S L +E+ I L FFA+S+ Sbjct: 77 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASD 133 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 134 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 193 Query: 151 EVPSITAKANWALQY 165 +P + KA+WA+++ Sbjct: 194 TLPCVKKKADWAIRW 208 >gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 99B1] Length = 325 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E+Y A + W +E+ + D W LT++E+ IK L FFA+++ Sbjct: 15 LFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDWPK---LTENEQHFIKYILAFFATAD 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VH+ T+ ++ SL D+ E LF R Sbjct: 72 GVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVEDKDEQRNLFRAIR 131 Query: 151 EVPSITAKANWALQY 165 + SI KA+WAL++ Sbjct: 132 TIQSIKNKADWALKW 146 >gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter pylori B8] gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter pylori B8] Length = 341 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus] gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream iridovirus] Length = 312 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + Q E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSP 172 WA Q+ P Sbjct: 132 QWAAQWLNATHKP 144 >gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Lithuania75] Length = 341 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper iridovirus] Length = 312 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + Q E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSP 172 WA Q+ P Sbjct: 132 QWAAQWLNATHKP 144 >gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis] Length = 390 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P+ A +R +++ +L + P++Y W+ Y A + W EV + DL Sbjct: 59 NPVSA--ERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 116 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 117 WES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 173 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 S + +I + D E LFN +P + KA+WA+ Sbjct: 174 SEMYSLLIDTYIKDSQEREFLFNAIETLPCVKKKADWAM 212 >gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 346 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ WE Y A + W EV + D W + L D+E+ I L FFA+S+ Sbjct: 39 LFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWIT---LNDNEQHFISHVLAFFAASD 95 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D + +LF Sbjct: 96 GIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKDPKKKSDLFRAIH 155 Query: 151 EVPSITAKANWALQYTQTLSS 171 VP++ KA+WAL++ + +S Sbjct: 156 TVPTVAKKADWALKWIGSDAS 176 >gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPKX_438_AG0C1] Length = 341 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia guttata] Length = 390 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 12/172 (6%) Query: 1 MANNTGLSPIQAGE------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 +A+ T Q G+ +R +++ +L + P++Y W+ Y A + W Sbjct: 44 LASKTARRIFQEGDGNSVSVERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFW 103 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 EV + DL W+S L +E+ I L FFA+S+ +V N+V + + E R Sbjct: 104 TAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 160 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 + Q E +HS + +I + D E LFN +P + KA+WA+ Sbjct: 161 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAM 212 >gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase [Ornithorhynchus anatinus] Length = 394 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 6/150 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E Sbjct: 72 VEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 128 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 129 KYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 188 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQY 165 + E LFN +P + KA+WAL++ Sbjct: 189 IKEPKEREFLFNAIETLPCVKKKADWALRW 218 >gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa Japonica Group] Length = 339 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 5/150 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L S+ + P++Y WE Y A + W EV + D W + L+ DER Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-- 138 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 139 -GLDEGELFNMYREVPSITAKANWALQYTQ 167 G ++ LF VP++ KA+WA+++ Sbjct: 132 DGAEKDRLFRAIDTVPAVRRKADWAMRWID 161 >gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] Length = 331 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ WE Y + W E+ + D+ W++ L+D ER I L FFA+S+ Sbjct: 21 LFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWEN---LSDGERHFISHVLAFFAASD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + E + + Q E +HS T+ +I + D E L Sbjct: 78 GIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYIKDSAEKDRLLRAIE 137 Query: 151 EVPSITAKANWALQYTQTLSSPSF 174 +P + KA+WAL++ + SP F Sbjct: 138 TIPCVQKKADWALKW---IDSPVF 158 >gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori B38] gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Helicobacter pylori B38] Length = 341 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo] Length = 399 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D++ W+ L +E+ + L FFA+S+ Sbjct: 89 VFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWEK---LKSEEKHFVSHVLAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 146 GIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYVKDPTERDFLFNAIE 205 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL++ Sbjct: 206 TMPCVKEKADWALRW 220 >gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti] gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti] gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] Length = 397 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DLA W+ L E+ I L FFA+S+ Sbjct: 90 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLADWEK---LKSGEKHFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 147 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREYLFNAID 206 Query: 151 EVPSITAKANWALQYTQT 168 +P + KA+WAL + + Sbjct: 207 NLPCVKKKADWALNWISS 224 >gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F30] Length = 341 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo laibachii Nc14] Length = 1611 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++++ ++P + E + + L + L P++ W+ Y A + W E+ Sbjct: 49 LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W + ++D+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 109 LVHDMNDWLN---ISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E +HS + +I + D E L +P +T KA WAL++ Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKW 213 >gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter pylori 35A] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays] gi|194692834|gb|ACF80501.1| unknown [Zea mays] gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P+++ WE Y A + W EV + D W L+ DER I Sbjct: 17 LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWD--EALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D+ Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDV 134 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LF VP++ KA+WA+++ Sbjct: 135 EKDRLFRAIDTVPAVRRKADWAMRWID 161 >gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F16] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SouthAfrica7] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter acinonychis str. Sheeba] gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter acinonychis str. Sheeba] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori 51] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori v225d] gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Cuz20] gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F32] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 52] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding [Arabidopsis thaliana] gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C; AltName: Full=Ribonucleoside-diphosphate reductase TSO2 subunit; AltName: Full=Ribonucleotide reductase small subunit C gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana] gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] Length = 332 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+ Y WE Y A + W EV + D W+ N L D ER Sbjct: 6 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDGERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 64 FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 123 Query: 141 DEGE---LFNMYREVPSITAKANWALQY---TQTLS 170 D E LF +P + KA WA+++ +QT + Sbjct: 124 DNKERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFA 159 >gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Sat464] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPAG1] gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori HPAG1] Length = 341 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica] Length = 493 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 14/167 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A N SP + E + + +R + + P++Y W Y A + W EV + Sbjct: 162 APNEPASPSKEDEPLLRENPRRFV--------IFPIEYHDIWHMYKKAEASFWTAEEVDL 213 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W++ L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 214 SKDIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 270 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E +HS + +I + D E LFN +P + KA+WAL++ Sbjct: 271 AMENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRW 317 >gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa] Length = 333 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W+ EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 145 TMPCVKKKADWA 156 >gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] Length = 349 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ WE Y + + W E+ + D+ W N L D ER I L FFA+S+ Sbjct: 20 LFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDW---NSLNDGERHFISHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + E + + Q E +HS T+ +I + D E L N Sbjct: 77 GIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKDPVEKDRLLNAID 136 Query: 151 EVPSITAKANWALQYTQTLS 170 +P + KA WAL++ S Sbjct: 137 TIPCVQKKAEWALRWIDNGS 156 >gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] Length = 329 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+ Y WE Y A + W EV + D W+ N L D ER Sbjct: 3 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERH 60 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 120 Query: 141 DEGE---LFNMYREVPSITAKANWALQY---TQTLS 170 D E LF +P + KA WA+++ +QT + Sbjct: 121 DNKERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFA 156 >gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 1] Length = 324 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 18/164 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ W+ Y + W E+ DL W N L +E+ IK L FFASS+ Sbjct: 19 MFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQYYIKMILAFFASSD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ L + E R + Q E +HS T+ +I S DE E LF+ Sbjct: 76 GIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIKDENEKNKLFHSLE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 P I K WA++ W ++S TR + F C Sbjct: 136 HFPCIEKKGKWAMK------------WINDKKSNFSTRLVAFAC 167 >gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta] Length = 426 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKNGLTDDERLMIKRNLGFFASS 92 + P++Y WE Y A + W EVP+ D W K L DE+ I L FFA+S Sbjct: 112 IFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDEK--LNSDEKYFISHVLAFFAAS 169 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 + +V N++ + + E R + Q E +HS + +I + D E LFN Sbjct: 170 DGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYSLLIETYISDPKEKDFLFNAI 229 Query: 150 REVPSITAKANWAL 163 +P + KA WAL Sbjct: 230 ETLPCVGKKAKWAL 243 >gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori India7] Length = 341 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSVEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 +K ++ Q Y + +P+ Sbjct: 153 SKNDYIAQVYMELAKNPT 170 >gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus] gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68] Length = 319 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus] gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus] Length = 319 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus] gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus] Length = 319 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga mimivirus] gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] Length = 417 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 9/150 (6%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ +S+ + P+KY W+ Y N+W EV + D+ W N L+DD+R I Sbjct: 101 ILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDW--NNHLSDDDRNFIM 158 Query: 84 RNLGFFASSESLVANNIV--LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 L FFA+++ +V NI L + EC Y + A E A H + ++T+ D Sbjct: 159 HVLAFFAAADGIVNANIKENLIDVVKIKEAEC-AYGFQYAMENA-HGEMYSLMLTTFVKD 216 Query: 142 EG---ELFNMYREVPSITAKANWALQYTQT 168 + +L N + +PSI KA+W ++ ++ Sbjct: 217 DALRNKLINSIKTMPSIKKKADWCNKWIKS 246 >gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small chain); putative [Variola major virus] gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus] gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus] gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus] gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus] Length = 333 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA+WA ++ +S Sbjct: 145 TMPCVKKKADWAQKWIHDSAS 165 >gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus] Length = 333 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 145 TMPCVKKKADWA 156 >gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus] Length = 319 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus] gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara] Length = 319 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus] Length = 319 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan] Length = 319 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c] gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c] Length = 269 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 6/129 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL+ W + L DDE+ IK L FFA+S+ +V N+V Sbjct: 2 YKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E VHS + +I + D E LFN +P I KA+WA Sbjct: 59 QEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADWA 118 Query: 163 LQYTQTLSS 171 L++ + S+ Sbjct: 119 LKWISSNSA 127 >gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus] Length = 312 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + Q + +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSP 172 WA Q+ P Sbjct: 132 QWAAQWLNATHKP 144 >gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] Length = 351 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+++R+ + + +L +KY WA+ + N W P EV M D + LT Sbjct: 26 VNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVNMNQDKRDYME---LTLQ 82 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ R L +SL NN+ I +++ PE L+RQAFEE++H+ ++ ++ S Sbjct: 83 EKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQAFEESLHAQSYAVMVDS 142 Query: 138 LGLDEGELFNMYREVPSITAKANW-ALQYTQTLSSPS 173 + + E++ M+R+ + +K ++ A YT +P+ Sbjct: 143 ISANTDEIYQMWRKDDKLRSKNDYIADVYTDLAKNPT 179 >gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16] gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16] gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus] gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus] gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus] gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus] Length = 319 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] Length = 493 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 6/156 (3%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R + D+ +L + L P+KY WE Y + W EV DL W L Sbjct: 161 RSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLIDWHR---LK 217 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ IK L FFA+S+ +V N+ + PE R + Q E VHS + ++ Sbjct: 218 PEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENVHSEMYSVLL 277 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 + E LF+ +P++ KA WA+++ + Sbjct: 278 DHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWISS 313 >gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus] Length = 398 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DLA W+ L E+ I L FFA+S+ Sbjct: 91 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLADWEK---LKSGEKHFISHVLAFFAASD 147 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 148 GIVNVNLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREYLFNAID 207 Query: 151 EVPSITAKANWALQYTQT 168 +P + KA+WAL + + Sbjct: 208 NLPCVKKKADWALNWISS 225 >gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body iridovirus] Length = 312 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + + E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSP 172 WA Q+ P Sbjct: 132 QWAAQWLNATHKP 144 >gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A T L P A E +L SD + P+++ WE Y A + W EV + Sbjct: 3 AAPTLLPPCDAEEP--------LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGL 54 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D W L+ DER I L FFA+S+ +V N+ + E R + Q Sbjct: 55 SADARHWD--EALSPDERHFISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQI 112 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQ 167 E +HS + ++ + D E LF VP++ KA+WA+++ Sbjct: 113 AIENIHSEMYSLLLETYIRDHVEKDRLFRAIDTVPAVRRKADWAMRWID 161 >gi|297209|emb|CAA48969.1| C8L [Variola virus] gi|745144|prf||2015436AF C8L gene Length = 333 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 145 TMPCVKKKADWA 156 >gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus] gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus] Length = 325 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + D W L+++E+ IK L FFA+S+ Sbjct: 18 VFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDWLK---LSENEKKFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + LD E LFN Sbjct: 75 GIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134 Query: 151 EVPSITAKANWALQYTQTLSS 171 + + KANWA ++ ++ +S Sbjct: 135 NMNCVKQKANWARKWIESKNS 155 >gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus] gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 319 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus] gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia virus] gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR] Length = 319 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen] Length = 319 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus] gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus] Length = 319 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|885717|gb|AAA69333.1| C8L [Variola virus] gi|885826|gb|AAA69439.1| C8L [Variola virus] gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus] gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus] gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus] gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus] gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus] gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus] gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus] gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus] gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus] gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus] gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus] gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus] gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus] gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus] gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus] gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus] gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus] gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus] gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus] gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus] gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus] gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus] gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus] gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus] gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus] gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus] gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus] gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus] gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus] gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus] gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus] gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus] gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus] gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus] gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus] gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus] gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus] gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus] gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus] gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus] gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus] gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus] gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus] gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus] gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus] gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus] gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus] gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus] gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus] gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus] gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F57] Length = 341 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 4/138 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + + N W EV M DD + L+ +E++ R L +SL Sbjct: 36 IKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R + Sbjct: 93 TNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDMQLK 152 Query: 157 AKANWALQ-YTQTLSSPS 173 K ++ Q Y + +P+ Sbjct: 153 NKNDYIAQVYMELAKNPT 170 >gi|885759|gb|AAA69374.1| E4L [Variola virus] gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus] gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus] gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus] gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus] gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus] gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus] gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus] gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus] gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus] gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus] gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus] gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus] gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus] gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] Length = 342 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG---L 74 V D+++ + + L +KY WA + + + N W P EV M D KN L Sbjct: 18 VSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSMHGD------KNHYLHL 71 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E++ R L +SL NN++ I +++PE L+RQA+EEA+HSH++ + Sbjct: 72 SPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHSYAVM 131 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 + S+ + ++ M+R ++ K + Q LS+ Y Sbjct: 132 VESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSNNPTEY 173 >gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum] gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] Length = 352 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%) Query: 12 AGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E ++N ++ ML +R + N+L L W Y A + W+ E+ + D W+S Sbjct: 24 VNEVKINQVNEPMLKYSRENRNELKELIKD-IWSMYKKAEASFWVTEEIDLSQDTRDWES 82 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D ER IK L FFA+S+ +V N+ + R + PE R Y Q E +HS T Sbjct: 83 ---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQMSIEQIHSET 139 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 + +I + E LF + ++ KA WA ++ + Sbjct: 140 YSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWMNS 180 >gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Meleagris gallopavo] Length = 339 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W Y A + W EV + DL W+S L +E+ I L FFA+S+ Sbjct: 33 FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDG 89 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 90 IVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIET 149 Query: 152 VPSITAKANWALQY 165 +P + KA+WA+++ Sbjct: 150 LPCVKKKADWAIRW 163 >gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST] gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST] Length = 400 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L ER I L FFA+S+ Sbjct: 93 IFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET---LKPSERHFISHVLAFFAASD 149 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 150 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREFLFNAIE 209 Query: 151 EVPSITAKANWALQYTQT 168 +P + KA+WAL + + Sbjct: 210 TLPCVKRKADWALNWISS 227 >gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] Length = 328 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y A + W E+ + D W S L D ER I L FFA+S+ Sbjct: 22 IFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHFISHVLAFFAASD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + ++ E + + Q E +H+ T+ +I + D E + N Sbjct: 79 GIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKDTTERQRMLNAIE 138 Query: 151 EVPSITAKANWALQYTQ 167 +P + KA+WA+++ + Sbjct: 139 TIPCVKKKADWAIRWIE 155 >gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Ciona intestinalis] Length = 393 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L +ER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWEA---LKPNERKFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 143 GIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYIRDTHEREFLFNAIE 202 Query: 151 EVPSITAKANWALQY 165 +P + KA WAL++ Sbjct: 203 TLPCVRKKAEWALKW 217 >gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum lavamentivorans DS-1] gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W K LT+ ER ++ + FF ++ Sbjct: 12 PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSKK--LTEGERNLLTQIFRFFVQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 V NN + Y + P Q +L AF E VH + +++ ++G+ E E Sbjct: 70 V-NNCYMKHYSRVFKPTEVQMML-AAFSNIETVHISAYSHLLDTIGMPEAE 118 >gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa Indica Group] Length = 233 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D W + L+ DER + L FFA+S+ Sbjct: 1 MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVSHVLAFFAASD 58 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + ++ + D+ E LF Sbjct: 59 GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118 Query: 151 EVPSITAKANWALQYTQ 167 VP++ KA+WA+++ Sbjct: 119 TVPAVRRKADWAMRWID 135 >gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Apis mellifera] Length = 384 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 6/168 (3%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N + + E + N + + +L + P+++ W+ Y A + W EV Sbjct: 44 VINTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W N LT E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 104 LSKDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E VHS + +I + D E LFN +P + KA+WAL + Sbjct: 161 VAMENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNW 208 >gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83] gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83] Length = 321 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL WK LTD+ER IK L FFA+S+ Sbjct: 14 IFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWKK---LTDNERYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + D E L Sbjct: 71 GIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITDVDEKNHLLKAID 130 Query: 151 EVPSITAKANWA 162 + I KA WA Sbjct: 131 TIDCIKEKAKWA 142 >gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 326 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 20/175 (11%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ + + L P+++ W Y A ++ W EV + D+ WK L E+ I Sbjct: 10 LLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWKK---LNPKEKHFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+V + E + + Q E +HS + +I + D G Sbjct: 67 NVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD-G 125 Query: 144 E----LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN + +PS+ KA+WA++ W + + S TR + F C Sbjct: 126 EQKKFLFNAVKTIPSVKDKADWAIK------------WIEDKNSDFATRLVAFAC 168 >gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi] Length = 390 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W S L ER I L FFA+S+ Sbjct: 83 IFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWDS---LKPSERHFISHVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKERDFLFNAIE 199 Query: 151 EVPSITAKANWALQYTQT 168 +P + KA+WA+ + + Sbjct: 200 TLPCVKRKADWAMNWISS 217 >gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe 972h-] gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe] Length = 391 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K L DER I L +FA+S+ Sbjct: 78 LFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--LNADERYFISTVLAYFAASD 135 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N++ + PE R Q E +HS T+ ++ + + E F+ Sbjct: 136 GIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAIL 195 Query: 151 EVPSITAKANWALQY 165 + SI AKA WAL++ Sbjct: 196 TMGSIKAKAKWALRW 210 >gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] Length = 321 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL WK LTD+ER IK L FFA+S+ Sbjct: 14 IFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWKK---LTDNERYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+ Y + E R + Q E +HS + +I + D E ++ + + Sbjct: 71 GIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITDVDEKNHLLKAID 130 Query: 154 SITA---KANWA 162 +I KA WA Sbjct: 131 TIDCVKEKAKWA 142 >gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen and kidney necrosis virus] gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen and kidney necrosis virus] Length = 312 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTEK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L PE R + Q E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQY 165 WA Q+ Sbjct: 132 QWAAQW 137 >gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe] gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small Length = 391 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K L DER I L +FA+S+ Sbjct: 78 LFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--LNADERYFISTVLAYFAASD 135 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N++ + PE R Q E +HS T+ ++ + + E F+ Sbjct: 136 GIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAIL 195 Query: 151 EVPSITAKANWALQY 165 + SI AKA WAL++ Sbjct: 196 TMGSIKAKAKWALRW 210 >gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] Length = 391 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+ L E+ I L FFA+S+ Sbjct: 84 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWEK---LKSGEKHFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 141 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKEREYLFNAIE 200 Query: 151 EVPSITAKANWALQYTQT 168 +P + KA+WA+ + + Sbjct: 201 TLPCVKKKADWAMNWISS 218 >gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] Length = 323 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++G W Y A + W EV + DL WK+ L +ER I L FFA S+ Sbjct: 16 IFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWKN---LKPEERRFISYILAFFAVSD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + +I + D E LF+ R Sbjct: 73 GIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTYIDDNNEKKRLFSSMR 132 Query: 151 EVPSITAKANWALQY 165 + + K+ WAL++ Sbjct: 133 TMDCVRKKSEWALKW 147 >gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] Length = 304 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 15 KRVNVDDKRMLNA------RSDVNQ--LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + +NV+D R+ N + ++ + + P+++ W Y A + W EV + DL Sbjct: 17 QNINVNDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLE 76 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ L ER I L FFA+S+ +V N+V + + E R + Q E V Sbjct: 77 HWER---LKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENV 133 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 HS + +I + + E LFN +P + KA+WAL++ Sbjct: 134 HSEMYSLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKW 175 >gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa] gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa] Length = 350 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 15/139 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ W+ Y A + W EV + D W++ L D ER I R L FFA+S+ Sbjct: 58 IFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LNDGERHFISRVLAFFAASD 114 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+V + + PE R + Q E VHS SL LFN E Sbjct: 115 GIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSE------MSL------LFNAIYEFE 162 Query: 154 SITAKANWALQYTQTLSSP 172 + KA+WAL + + +P Sbjct: 163 FVKKKADWALCWIADIKAP 181 >gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FF +S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFXASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus CB15] gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus NA1000] gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter crescentus CB15] gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter crescentus NA1000] Length = 347 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 7/138 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F+ + E ++ Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137 Query: 156 TAKANWALQYTQTLSSPS 173 AK + Y QT S Sbjct: 138 KAKHD----YMQTFGVDS 151 >gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FF +S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFXASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] Length = 343 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y A + W EV + D+ W+ L+ E+ IK L FFA+S+ Sbjct: 29 LFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWER---LSSGEQHFIKHVLAFFAASD 85 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + + E R + Q E VHS + +I + + E LFN Sbjct: 86 GIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEMYSVLIDTYIRERAERERLFNAIE 145 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P++ KA+WA + + ++ Sbjct: 146 TIPAVKRKADWAFNWITSTTA 166 >gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus] gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96] gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS] Length = 319 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT +E+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWA 162 +P + KA+WA Sbjct: 131 TMPCVKKKADWA 142 >gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus] gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus] Length = 333 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT +E+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKHFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA+WA ++ +S Sbjct: 145 TMPCVKKKADWAQKWIHDSAS 165 >gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma mansoni] gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative [Schistosoma mansoni] Length = 365 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y A + W EV + D W+S L ER I L FFA+S+ Sbjct: 55 LFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LKVGERHFISYVLAFFAASD 111 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + + PE R + Q E +HS + +I + D E LFN Sbjct: 112 GIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLIDTYIKDSKERDFLFNAIS 171 Query: 151 EVPSITAKANWALQY 165 + + KA WAL + Sbjct: 172 NLTCVAKKAQWALDW 186 >gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens] Length = 319 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W+ Y A + W EV + D+ W +K L D ER IK L FFA+S+ Sbjct: 11 LFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDTK--LNDKERHFIKHVLAFFAASD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + PE R + Q E +HS + +I + D + E Sbjct: 69 GIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQKKHECLTAID 128 Query: 151 EVPSITAKANWALQYT 166 +P + KA WAL++ Sbjct: 129 TMPCVAEKAQWALRWC 144 >gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 297 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W E+ + +DL W + LT +ER + L FFA+S+ +V N+ Sbjct: 2 YKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 +++PE R + Q E +HS T+ +I + D E L N VP + KA+WA Sbjct: 59 TEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHWA 118 Query: 163 LQYTQT 168 L++ Sbjct: 119 LKWCDA 124 >gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 330 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA WA ++ + +S Sbjct: 155 NIPSIRKKALWAQKWIASDTS 175 >gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335710|gb|AAA48294.1| F14 [Vaccinia virus] Length = 319 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 8/133 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N +T DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQ-YLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +V N+ + E R Y R A E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFRMAIEN-IHSEMYSLLIDTYVKDSNEKNYLFNAI 129 Query: 150 REVPSITAKANWA 162 +P + KA+WA Sbjct: 130 ETMPCVKKKADWA 142 >gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502] gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis] Length = 296 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W+ E+ + D W+S L D ER IK L FFA+S+ +V N+ + Sbjct: 2 YKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFL 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 R + PE R Y Q E +HS T+ +I D E LF + ++ KA WA Sbjct: 59 REIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEWA 118 Query: 163 LQYTQT 168 ++ + Sbjct: 119 TKWMNS 124 >gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum] Length = 230 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y A + W EV + D W+S L ER I L FFA+S+ Sbjct: 52 LFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---LKVGERHFISYVLAFFAASD 108 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + + PE R + Q E +HS + +I + D E LFN Sbjct: 109 GIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLIDTYIKDSKERDFLFNAIS 168 Query: 151 EVPSITAKANWALQY 165 + + KA WAL + Sbjct: 169 NLTCVAKKAQWALDW 183 >gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] Length = 387 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W Y A ++W E+ D+ W N L+D+E+ IK L FFA S+ Sbjct: 85 VFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDW---NELSDNEKHFIKYILAFFAGSD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + E R + Q+ E VH T+ +I ++ +LF + Sbjct: 142 GIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKYIKNSSEKKQLFEAIQ 201 Query: 151 EVPSITAKANWALQY 165 +P I KA WA+++ Sbjct: 202 TIPCIERKAKWAMKW 216 >gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] Length = 331 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L D L P+++ WE Y A + W E+ + D W++ LT+ E Sbjct: 9 DEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWEN---LTEGETH 65 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E + + Q E VHS T+ +I + Sbjct: 66 FIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLLIDTYVK 125 Query: 141 DEGE---LFNMYREVPSITAKANWALQY 165 D E LFN + + KA+WAL++ Sbjct: 126 DNKEKDKLFNAIDTMDCVKKKADWALRW 153 >gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] Length = 297 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 2 YKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + PE R + Q E VHS + +I + D + LFN +P + KA+WA Sbjct: 59 QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118 Query: 163 LQY 165 L++ Sbjct: 119 LRW 121 >gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 251 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA WA ++ + +S Sbjct: 155 NIPSIRKKALWAQKWIASDTS 175 >gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3] gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3] gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3] gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3] Length = 335 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 6/129 (4%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A ++W E+ + D A W+S L+++E+ +K L FFA+S+ +V N+ Sbjct: 35 WSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFFLKNILAFFAASDGIVNENLAT 91 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 + + E R + Q E VHS + ++ + LD E LF +P I KA Sbjct: 92 RFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILDPVERNGLFKAMETMPCIKKKA 151 Query: 160 NWALQYTQT 168 +WAL + ++ Sbjct: 152 DWALNWIES 160 >gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] Length = 318 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ W+ Y A + HW E+ M D W +K L D ER +K L FFA+++ Sbjct: 9 LFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWNNK--LNDKERFFLKHVLAFFAAAD 66 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NI+ + + E + +Q E VH+ + ++ D E + N Sbjct: 67 VIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRILNAIE 126 Query: 151 EVPSITAKANWALQYTQTLSS 171 + S+ KA WA ++ ++ ++ Sbjct: 127 HIDSVKRKATWAQKWIESQTA 147 >gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens SM101] gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens SM101] Length = 344 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 35/209 (16%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL +K LT Sbjct: 15 IETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK---LT 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 KEEKAAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSLGLDE----------------------GELFNMYREVPSI-----TAKANWALQYTQT 168 S+ E G+L+N + E SI + AN+ L+ Sbjct: 131 DSICSPEERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSIENFIKSVMANYILEGVYF 190 Query: 169 LSSPSFHYWNKRRRSRI--LTRSLRFLCR 195 S F Y N R ++ + +R++ R Sbjct: 191 YSGFMFFY-NLERNGKMPGSAQEIRYINR 218 >gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 183 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA WA ++ + +S Sbjct: 155 NIPSIRKKALWAQKWIASDTS 175 >gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens str. 13] gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens ATCC 13124] gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium perfringens str. 13] gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens ATCC 13124] gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] Length = 344 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL +K LT Sbjct: 15 IETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK---LT 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 KEEKTAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSL 138 S+ Sbjct: 131 DSI 133 >gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV] gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV] Length = 338 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 7/165 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+P GEK + + +L + P++Y W Y A + W EV + D Sbjct: 6 LAPAD-GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTR 64 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ L D+ER IK L FFA+S+ +V N+V + + E R + Q E V Sbjct: 65 DWER---LNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENV 121 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 HS + +I + E L N +P + KA WAL++ + Sbjct: 122 HSEMYSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIAS 166 >gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] Length = 350 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D+ W SK L D+ER ++ + FF S+ Sbjct: 23 PFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWASK--LNDNERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E VH + ++ ++G+ E E F + E ++ Sbjct: 81 VQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYEAM 139 Query: 156 TAKANWALQY 165 K N+ ++ Sbjct: 140 RDKHNFMQKF 149 >gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] Length = 348 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D + W+ L D+ER IK L FFA+S+ Sbjct: 42 IFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWER---LNDNERHFIKHVLAFFAASD 98 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + E L N Sbjct: 99 GIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSEMYSTLIDTYVRSSEEKLRLLNAIE 158 Query: 151 EVPSITAKANWALQY 165 +P + KA WAL++ Sbjct: 159 TMPCVKEKAEWALRW 173 >gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA WA ++ + +S Sbjct: 155 NIPSIRKKALWAQKWIASDTS 175 >gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 334 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDW--HRSLTESERHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 85 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPESEYSAFLKYKE 142 Query: 152 V 152 + Sbjct: 143 M 143 >gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo sapiens] gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens] Length = 297 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 2 YKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + PE R + Q E VHS + +I + D + LFN +P + KA+WA Sbjct: 59 QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118 Query: 163 LQY 165 L++ Sbjct: 119 LRW 121 >gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] Length = 342 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA E Y + NN W+P E+ + +D+ K + LTD ER + + F +S+ Sbjct: 32 IKYNWANELYRNMLNNFWIPEEISLNEDV---KQFSYLTDGERNAFDKIISFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens] Length = 297 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 2 YKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + PE R + Q E VHS + +I + D + LFN +P + KA+WA Sbjct: 59 QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118 Query: 163 LQY 165 L++ Sbjct: 119 LRW 121 >gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 336 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA WA ++ + +S Sbjct: 155 NIPSIRKKALWAQKWIASDTS 175 >gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 66 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 122 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 123 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 182 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA WA ++ + +S Sbjct: 183 NIPSIRKKALWAQKWIASDTS 203 >gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 196 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSS 171 +PSI KA WA ++ + +S Sbjct: 155 NIPSIRKKALWAQKWIASDTS 175 >gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae] Length = 213 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 6/128 (4%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WE Y + W E+ + D W+S LT E+ IK L FFA+S+ +V N+ Sbjct: 6 WEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVLENLAG 62 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKA 159 + PE R + Q E +HS T+ +I ++ ++ N +P++ KA Sbjct: 63 QFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPAVAEKA 122 Query: 160 NWALQYTQ 167 WA+Q+ Q Sbjct: 123 KWAVQWMQ 130 >gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 350 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 8/177 (4%) Query: 21 DKRMLNAR-SDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++R++N +++ +L +KY WA++ Y + +N W+P E+P+ +D ++ L+D E Sbjct: 25 NRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQYER--VLSDYE 82 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R + L F + +S + ++ R +S PE L Q F+E++H++++Q+I+ S+ Sbjct: 83 RRAYELVLSFLIALDSFQVD-MLKDFARMISAPEVEMALTAQEFQESIHAYSYQFILESV 141 Query: 139 --GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E++N +RE + + + Y + + PS + K + SL F Sbjct: 142 VDPIKADEIYNYWREDEKLKERNEVVAEVYNEFIRKPSEENFIKAVIGNYILESLYF 198 >gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 70 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/37 (67%), Positives = 31/37 (83%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLS 48 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ Sbjct: 33 ASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLA 69 >gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 357 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 6/108 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + N HW+ TE+ MQ D+ W +KN LTD E+ +I L FA +E+ Sbjct: 12 PFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDW-NKN-LTDQEKNVIGDILKGFAQTETE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLD 141 V N I + PE + ++ QAF E +H+ + Y+ LGLD Sbjct: 70 VGNYWSEMIPKWFPIPEIK--MMGQAFGSFETIHAAAYSYLNDILGLD 115 >gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] Length = 355 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ WE Y A + W E+ + DL W + L D ER I L FFA+S+ Sbjct: 46 LFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDWAN---LNDGERHFISHVLAFFAASD 102 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D E LFN Sbjct: 103 GIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKDPQERDKLFNAID 162 Query: 151 EVPSITAKANWALQYTQTLS 170 + + KA+WAL++ + S Sbjct: 163 TLDCVKKKADWALRWIEQAS 182 >gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum centenum SW] gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum centenum SW] Length = 322 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W+ K LT+ ER ++ + FF ++ Sbjct: 14 PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQK--LTEAERNLLTQIFRFFTQADVE 71 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN + Y + P E L + E VH + +++ ++G+ E E F Y+E+ Sbjct: 72 V-NNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPEIEYSAFLRYKEM 130 >gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] Length = 346 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F+ + E ++ Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137 Query: 156 TAKANWALQYTQTLSSPS 173 K + Y QT S Sbjct: 138 KDKHD----YMQTFGVDS 151 >gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] Length = 342 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ +Q+D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWARLIYRTMLNNFWIPEEISLQEDV---KQFPYLTDGERNAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ + +++++RE Sbjct: 89 SENLP-NISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPVTRDRIYDIWRE 144 >gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 344 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 5/121 (4%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + KR++N + ++N +KY W + Y NN W+P EV + DL K L D+ Sbjct: 17 ITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDL---KDYQNLLDE 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER+ + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S Sbjct: 74 ERIAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQSFQEAVHSQSYSYMLDS 132 Query: 138 L 138 + Sbjct: 133 I 133 >gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] Length = 365 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S+ Sbjct: 57 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHRT--LTESERHLVTQIFRFFTQSDVE 114 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 115 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETEYSAFLKYKE 172 Query: 152 V 152 + Sbjct: 173 M 173 >gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 400 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + +D K+M+ +++N +KY W + Y NN W+P E+ M D+ +++ L Sbjct: 69 IGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQYRT---LP 125 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +SL NN+ I ++++ E L QAF+EAVHS ++ Y++ Sbjct: 126 VAERRAYDKILSFLVFLDSLQTNNVPF-IAQYITANEAVLCLTIQAFQEAVHSQSYSYML 184 Query: 136 TSL 138 ++ Sbjct: 185 DTI 187 >gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] Length = 392 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Query: 8 SPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SP G+K D+ + N R V + P++Y W+ Y A + W E+ + DL Sbjct: 55 SPYYLGKKEDEKDEVVLTPNPRRFV--MFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLH 112 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W +K L DER I L +FA+S+ +V N++ + E R Q E + Sbjct: 113 DWDNK--LNKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENI 170 Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171 HS T+ ++ + D E F+ + SI AKA WAL++ + S Sbjct: 171 HSETYSLLLDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWIEDPES 218 >gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens] Length = 349 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W+ Y A + W E+ + D+ W K L D ER IK L FFA+S+ Sbjct: 41 LFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQK--LNDKERHFIKHVLAFFAASD 98 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + E R + Q E +HS + +I + D + E Sbjct: 99 GIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRDAKEKHECLTAID 158 Query: 151 EVPSITAKANWALQYT 166 +P +T KA WAL++ Sbjct: 159 TMPCVTKKAQWALRWC 174 >gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 500 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P+ + WE Y A W EV + D++ W+ LT DER I L FFA+S+ + Sbjct: 321 PIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWEI---LTSDERQFISSILAFFAASDGI 377 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREV 152 V N+ + E R + Q E +HS + ++ + D+ E LFN Sbjct: 378 VTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTF 437 Query: 153 PSITAKANWALQYTQTLSSP 172 I AKA+W L++ ++P Sbjct: 438 KFIKAKADWCLRWISDHNAP 457 >gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 581 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P+ + WE Y A W EV + D++ W+ LT DER I L FFA+S+ + Sbjct: 321 PIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWEI---LTSDERQFISSILAFFAASDGI 377 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREV 152 V N+ + E R + Q E +HS + ++ + D+ E LFN Sbjct: 378 VTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTF 437 Query: 153 PSITAKANWALQYTQTLSSP 172 I AKA+W L++ ++P Sbjct: 438 KFIKAKADWCLRWISDHNAP 457 >gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] Length = 348 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVPM +D+ W + L D ER ++ + FF ++ Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWAAN--LNDGERNLLTQIFRFFTQADIE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F + E ++ Sbjct: 82 VQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 141 KDKHDYMGQF 150 >gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] Length = 343 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +++ HW+P EVPM DD+ W + LT+ ER ++ + FF ++ Sbjct: 21 PFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDW--QKNLTESERNLLTQIFRFFTQADVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 79 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETEYQAFLKYKE 136 Query: 152 V 152 + Sbjct: 137 M 137 >gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum] Length = 337 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y + Y A + W EV + D+ W N L DE+ I L FFA+S+ Sbjct: 27 LFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW---NILNSDEKRFISHVLAFFAASD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+V + E R + Q E +HS + +I + D + ++F+ Sbjct: 84 GIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSEMYSLLIDTYISDFQEKDKMFSAIE 143 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA+WA+++ ++ S Sbjct: 144 TMPFVKKKADWAIRWIESTES 164 >gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus NW-LW] Length = 321 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L+++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LSNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWA 162 + I K+ WA Sbjct: 131 TMDFIKKKSEWA 142 >gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus] Length = 213 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V +++ +L S + P++Y W Y A + W EV + +L W N Sbjct: 67 ENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW---NK 123 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE + Q E VHS + Sbjct: 124 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEMYSL 183 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKAN 160 +I + D + LFN +P + KA+ Sbjct: 184 LIDTYIRDPKKREFLFNAIETMPYVKKKAD 213 >gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit [Cryptosporidium muris RN66] gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative [Cryptosporidium muris RN66] Length = 346 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 7/159 (4%) Query: 11 QAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 QA EK + ++ +L++ + ++Q++ + W Y + W E+ + D+ W+ Sbjct: 16 QAVEKIKAMQHEEPVLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWE 75 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 S L + E+ IK L FFA+S+ +V N+ + + + E R Y Q E +HS Sbjct: 76 S---LKEPEKHFIKYVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSE 132 Query: 130 TFQYII---TSLGLDEGELFNMYREVPSITAKANWALQY 165 T+ +I S D LF +P++ KA WA ++ Sbjct: 133 TYSLLIDQYISDVKDRQMLFEAISHLPAVKTKAKWATKW 171 >gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] Length = 339 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 MA T +P + + ++ D+R+ D + +KY WA + + N W P EV Sbjct: 1 MARKTIYNP----DSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREV 56 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 M D +K LT E+ M L +SL NN++ I +++ PE L R Sbjct: 57 QMTGDAKDYKY---LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSR 113 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 Q++EEA HS ++ ++ S+ + E+++M++ + K N+ LS Sbjct: 114 QSYEEANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSD 165 >gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp. K31] gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31] Length = 346 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA E + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 20 PFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDIE 77 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 VA+N + R E + L A E +H + ++ ++G+ E E Sbjct: 78 VADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESEF 127 >gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 348 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 12/146 (8%) Query: 24 MLNARSDVNQLL-------PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ML SD LL P +Y WA++ + HW+P EVP+ +D W +K LTD Sbjct: 1 MLTVASDRPGLLTPSLTYKPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWATK--LTD 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYII 135 ER ++ + FF S+ V N + Y L P E R L + E +H + ++ Sbjct: 59 KERNLLTQIFRFFTQSDVEVGAN-YMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLL 117 Query: 136 TSLGLDEGELFNMYREVPSITAKANW 161 ++G+ + E F+ + E + AK ++ Sbjct: 118 ETIGMPDTE-FSAFMEYEEMAAKHDY 142 >gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium beijerinckii NCIMB 8052] gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii NCIMB 8052] Length = 344 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + KR++N + ++N +KY W + Y NN W+P EV + DL K L ++ Sbjct: 17 ISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLSQDL---KDYQNLLEE 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER+ + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S Sbjct: 74 ERIAYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAVHSQSYSYMLDS 132 Query: 138 L 138 + Sbjct: 133 I 133 >gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 329 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSNVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFH 175 + K + L++ ++ H Sbjct: 128 MRKKYEYMLEFEESKKQDKKH 148 >gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus salmonis] Length = 335 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A W EV + DL W L DE+ I L FFA+S+ Sbjct: 28 MFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDWAK---LNKDEKHFISNVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS + +I + D+ E LFN Sbjct: 85 GIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDTYIEDDKEKDKLFNSIL 144 Query: 151 EVPSITAKANWALQY 165 + + KA WAL++ Sbjct: 145 TIECVKKKAEWALRW 159 >gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] Length = 348 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +++++++ S ++ L +KYGWA Y + N W+P ++ + D + N LT+ Sbjct: 19 LNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKIDLTQDRVDY---NNLTNY 75 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ L F +S+ NNI I +++ PE L Q F+EA+HS ++QYII S Sbjct: 76 EKEAYDGILSFLIFLDSIQTNNIP-NISDYITAPEINLILSIQTFQEAIHSQSYQYIIES 134 Query: 138 L 138 + Sbjct: 135 I 135 >gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool] Length = 392 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ WE Y + W E+ + D+ W+S N +E+ IK L FFA+S+ Sbjct: 86 ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWESLNS---NEKHFIKYVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +V N+ + PE R + Q E +HS T+ +I DE E ++ V Sbjct: 143 GIVLENLAEKFLSEIQIPEARAFYGFQIAMENIHSETYSLLIDQYIRDEKEKMELFDAV 201 >gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] Length = 342 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA E Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYNWANELYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ PE L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus] Length = 321 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWA 162 + I K+ WA Sbjct: 131 TMDFIKKKSEWA 142 >gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] Length = 349 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D+ W S L D+ER ++ + FF ++ Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAST--LNDNERNLLTQIFRFFTQADIE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L E +H + ++ ++G+ E E F + E ++ Sbjct: 82 VQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 141 RDKHDYMGQF 150 >gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter diazotrophicus PAl 5] Length = 353 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 11/156 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N TG +P ++ + V+ + L + + + P +Y WA++ +L+ HW+P EVP Sbjct: 4 ITNATGTAP-ESAPQPTGVEARLDLLTSNPIYK--PFRYPWAYDAWLTQQRVHWLPEEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD+ W LT+ E+ ++ + FF S+ V NN + Y + P ++ Sbjct: 61 LADDVKDWHRT--LTESEQHLVTQIFRFFTQSDVEV-NNCYMKHYSRVFKP-TEVLMMLS 116 Query: 121 AFE--EAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 AF E +H + +++ ++G+ E E F Y+E+ Sbjct: 117 AFSNIETIHIAAYSHLLDTIGMPEMEYSAFLKYKEM 152 >gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima] Length = 300 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + D+A W+S L +E+ I L FFA+S+ +V N+V Sbjct: 2 YKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + +I + D E LFN +P + KA+WA Sbjct: 59 KEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWA 118 Query: 163 LQYTQTLSS 171 +++ SS Sbjct: 119 MRWINDDSS 127 >gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus] Length = 321 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWA 162 + I K+ WA Sbjct: 131 TMDFIKKKSEWA 142 >gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera] Length = 312 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + D+ W+S L++ E+ I L FFA+S+ +V N+ Sbjct: 2 YKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARFL 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + PE R + Q E +HS + ++ + D E LFN + + KA WA Sbjct: 59 HDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKWA 118 Query: 163 LQYTQT 168 L + Q+ Sbjct: 119 LDWIQS 124 >gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula bermudensis HTCC2503] gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula bermudensis HTCC2503] Length = 340 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W +K LTD ER ++ + FF S+ Sbjct: 20 PFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWANK--LTDKERNLLTQIFRFFTQSDVE 77 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + Y L P E R L + E +H + ++ ++G+ E E F+ + + + Sbjct: 78 VGAN-YMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYEA 135 Query: 155 ITAKANW 161 + AK ++ Sbjct: 136 MAAKHDY 142 >gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor] Length = 321 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWA 162 + I K+ WA Sbjct: 131 TMDFIKKKSEWA 142 >gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 326 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY E Y W P E+ +Q D+ +KS LT E+ + +G+FASSE LV Sbjct: 20 KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 N + + L++P + Q F E +HS F+ I+ S +D +++N+ E Sbjct: 77 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKKIYNITLE 130 >gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1] gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1] Length = 328 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ ++ + P++ W Y +A +W EV + D+ W+ + L DER I Sbjct: 9 LLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+++ LV N+ + + E + Q E VH+ + +I +L D Sbjct: 67 HVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKDVK 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WA ++T Sbjct: 127 EQDRLFNAVERMPCIAKKAEWAKRWTH 153 >gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii VEG] Length = 391 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ WE Y + W E+ + D+ W++ L ++E+ IK L FFA+S+ Sbjct: 85 ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFIKYVLAFFAASD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +V N+ + PE R + Q E +HS T+ +I DE E ++ V Sbjct: 142 GIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDEEEKLQLFDAV 200 >gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii GT1] Length = 391 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ WE Y + W E+ + D+ W++ L ++E+ IK L FFA+S+ Sbjct: 85 ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFIKYVLAFFAASD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +V N+ + PE R + Q E +HS T+ +I DE E ++ V Sbjct: 142 GIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDEEEKLQLFDAV 200 >gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter oxydans 621H] gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter oxydans 621H] Length = 339 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDW--HRTLTEAERHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V N+ + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 85 V-NSAYMKYYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETEYSAFLKYKE 142 Query: 152 V 152 + Sbjct: 143 M 143 >gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum ATCC 824] gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum ATCC 824] gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum EA 2018] Length = 344 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+++N + ++N +KY W + Y NN W+P E+ + DL K LTD+ER Sbjct: 20 KKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDL---KDYGKLTDNERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ ++ Sbjct: 77 AYDKILSFLIFLDSVQTANLG-NINDYITASEVNLCLTIQAFQEAVHSQSYSYMLDTI 133 >gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] Length = 329 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQT 168 + K + L++ ++ Sbjct: 128 MRKKYEYMLEFEES 141 >gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] Length = 348 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W + L D ER ++ + FF S+ Sbjct: 23 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWAAN--LNDKERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 VA+N + R E + L A E +H + ++ ++G+ E E F + E ++ Sbjct: 81 VADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 139 Query: 156 TAKANW 161 K ++ Sbjct: 140 RDKHDF 145 >gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] Length = 348 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 8/175 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +R++ S ++ L +KY WA + Y + N W+P ++ + D +K+ LTD E+ Sbjct: 22 RRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 L F +S+ NNI + +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 137 Query: 141 DE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E +++ +RE + + + A Y + L +P+ ++K + L ++ F Sbjct: 138 KEIRNSIYDKWREDKILFERNKYIAEMYQRFLENPNDENFSKVIVADYLLEAIYF 192 >gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] Length = 342 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANTLYRTMLNNFWIPEEISLNEDI---KQFPYLTDSERRAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 89 SENLP-NISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTV 129 >gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 329 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQT 168 + K + L++ ++ Sbjct: 128 MRKKYEYMLEFEES 141 >gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] Length = 352 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W SK L+D ER ++ + FF S+ Sbjct: 23 PFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWASK--LSDSERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 V +N + R E + L A E +H + ++ ++G+ E E Sbjct: 81 VQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESEF 130 >gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] Length = 347 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + + + +RM+ + ++N +KY WA Y A NN W+P E+ + DL Sbjct: 8 PLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLKD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K+ LT ER + L F +S+ N+ I ++++ E L Q F+EAVH Sbjct: 68 YKN---LTAAERTAYDKILSFLVFLDSIQTANLP-CIAQYITANEVNLCLTIQGFQEAVH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ S+ Sbjct: 124 SQSYSYMLDSI 134 >gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 329 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQT 168 + K + L++ ++ Sbjct: 128 MRKKYEYMLEFEES 141 >gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum B str. Eklund 17B] gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B str. Eklund 17B] Length = 344 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N + ++N +KY WA + Y NN W+P E+ + DL +K L DER Sbjct: 20 KRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLKDYKK---LLPDERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S+ Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAVHSQSYSYMLDSI 133 >gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 345 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P +Y WA+E + HWMP EVP+ +D W K L+D ER ++ + FF Sbjct: 16 NAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWAVK--LSDAERNLLTQIFRFFTQ 73 Query: 92 SESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 S+ V N + Y L P E L + E +H + ++ ++G+ + E F+ + Sbjct: 74 SDVEVGAN-YMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLLETIGMPDSE-FSAFM 131 Query: 151 EVPSITAKANWALQY 165 E + AK ++ Q+ Sbjct: 132 EYKEMAAKHDYLGQF 146 >gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes bacterium D7] gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. D7] Length = 346 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ ++ L+ Sbjct: 15 IDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIRDYRL---LS 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER + L F +SL N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 EAERTAYDKILSFLVFLDSLQTANLP-NIGEYITANEINLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSL 138 S+ Sbjct: 131 DSI 133 >gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] Length = 342 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWAQTLYRTMLNNFWIPEEIALNEDV---KGFPFLTDGERHAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ + R+++ PE L QAF+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-HLSRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPVTRDKIYDQWRE 144 >gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. St. Maries] gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Mississippi] gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Puerto Rico] gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Virginia] gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale str. St. Maries] Length = 324 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 12 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E VH + Y++ ++G+ E E Sbjct: 69 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE 118 >gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] Length = 339 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 15/144 (10%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W L + E+ ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDW--HRVLNEGEQHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + Y++ +LG+ E E F Y+E Sbjct: 85 V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETEYSAFLKYKE 142 Query: 152 VPSITAKANWALQYTQTLSSPSFH 175 + Y QT + S H Sbjct: 143 MKD-------KYDYMQTFTVDSKH 159 >gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 339 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 15/144 (10%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W L + E+ ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDW--HRVLNEGEQHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + Y++ +LG+ E E F Y+E Sbjct: 85 V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETEYSAFLKYKE 142 Query: 152 VPSITAKANWALQYTQTLSSPSFH 175 + Y QT + S H Sbjct: 143 MKD-------KYDYMQTFTVDSKH 159 >gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] Length = 353 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 7/140 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + N W+P ++ + D +K+ LTD E+ L F +S+ Sbjct: 43 VKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQ 99 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154 NNI + +++ PE L Q F+EA+HS ++QYII S+ E +++ +RE Sbjct: 100 TNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKI 158 Query: 155 ITAKANW-ALQYTQTLSSPS 173 + + + A Y + L P+ Sbjct: 159 LFERNKYIAEMYQKFLEEPN 178 >gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] Length = 343 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 31 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 87 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E VH + Y++ ++G+ E E Sbjct: 88 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE 137 >gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium ulcerans ATCC 49185] Length = 348 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 7/140 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + N W+P ++ + D +K+ LTD E+ L F +S+ Sbjct: 38 VKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQ 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154 NNI + +++ PE L Q F+EA+HS ++QYII S+ E +++ +RE Sbjct: 95 TNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKI 153 Query: 155 ITAKANW-ALQYTQTLSSPS 173 + + + A Y + L P+ Sbjct: 154 LFERNKYIAEMYQKFLEEPN 173 >gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] Length = 332 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 20 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 76 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E VH + Y++ ++G+ E E Sbjct: 77 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE 126 >gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] Length = 338 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++ + FF ++ Sbjct: 31 PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDW--HRNLTPGERNLLTQIFRFFTQADVE 88 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 89 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 146 Query: 152 V 152 + Sbjct: 147 M 147 >gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii] Length = 360 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 6/130 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ DL W S +TD ER ++ + FF S+ V Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWASDR-VTDSERALLTQIFRFFTQSDIEVG 94 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 +N L Y + P Q ++ AF E VH + ++ +LG+ + E F +R + Sbjct: 95 DNY-LKRYIPIFQPLTVQMMM-AAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEM 151 Query: 156 TAKANWALQY 165 AKA++ ++ Sbjct: 152 RAKADYMHEF 161 >gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium cryptum JF-5] gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5] Length = 338 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++ + FF ++ Sbjct: 31 PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDW--HRNLTPGERNLLTQIFRFFTQADVE 88 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 89 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 146 Query: 152 V 152 + Sbjct: 147 M 147 >gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis] Length = 407 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 H + +V + DL W+S L DDER I L FFA+S+ +V N+V + + E Sbjct: 132 HLLWLQVDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTE 188 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 R + Q E +HS + +I + + E LFN +P + KA+WAL + Sbjct: 189 ARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNW 244 >gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] Length = 350 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP E+P+ +DL W SK L D ER ++ + FF S+ Sbjct: 24 PFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWASK--LNDRERNLLTQIFRFFTQSDVE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 V +N + R E + L + E +H + ++ ++G+ + E Sbjct: 82 VNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAEF 131 >gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] Length = 346 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 L Y WA+ + N W P EV + +D ++ L E+ M + L +S+ Sbjct: 35 LSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKALSQLIFMDSIQ 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 NN + ++ PE L+RQAFEEA+HS ++ ++ S+ L+ E++ M+R Sbjct: 92 TNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNTDEIYEMWR 145 >gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens] gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens] Length = 297 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V Sbjct: 2 YKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + +I + D E LFN +P + KA+WA Sbjct: 59 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWA 118 Query: 163 LQY 165 L++ Sbjct: 119 LRW 121 >gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] Length = 339 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 4/159 (2%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + + +++D+R+ SD + +KY WA + + N W P EV M D +K Sbjct: 10 DSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYKF-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS ++ Sbjct: 68 -LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKSYA 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 ++ S+ + +++M++ + K + + + LS Sbjct: 127 VMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG 165 >gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter butzleri RM4018] gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter butzleri RM4018] Length = 339 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 4/159 (2%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + + +++D+R+ SD + +KY WA + + N W P EV M D +K Sbjct: 10 DSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYKF-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS ++ Sbjct: 68 -LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKSYA 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 ++ S+ + +++M++ + K + + + LS Sbjct: 127 VMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG 165 >gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium aromaticivorans DSM 12444] gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium aromaticivorans DSM 12444] Length = 351 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 10/147 (6%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L AR N P +Y WA+E + HWMP EVP+ +D W K +++ ER ++ Sbjct: 3 LLEAR---NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--ISEHERNLLT 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + FF ++ V N R E + L + E VH + +++ ++G+ E Sbjct: 58 QIFRFFTQADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPES 117 Query: 144 ELFNMYREVPSITAKANWALQYTQTLS 170 E + M+ E + AK + Y QT Sbjct: 118 E-YGMFLEYEELKAKHD----YLQTFG 139 >gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 329 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ + Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 73 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E Sbjct: 74 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE 123 >gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Gardel] gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Gardel] Length = 329 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ + Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 73 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E Sbjct: 74 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE 123 >gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia ruminantium] gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 324 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E Sbjct: 69 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE 118 >gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6] gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 376L; AltName: Full=Ribonucleotide reductase small subunit gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6] Length = 360 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P Y + K+ +HW+P+EVPM DD+ W KN L D++R + FF Sbjct: 8 NYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDW--KNRLNDNQRDFLTNIFRFFTQ 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMY 149 + VA+ PE + A E VH + Y++ +LG+ E F MY Sbjct: 66 GDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEATYKEFLMY 125 Query: 150 REV 152 E+ Sbjct: 126 EEM 128 >gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 196 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 12/150 (8%) Query: 4 NTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHW 54 N + P+ AG + + D NA + Q L P++Y W KY + W Sbjct: 41 NLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIW 100 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R Sbjct: 101 TVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEAR 157 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 + Q E +HS T+ ++ + D E Sbjct: 158 AFYGFQLMMENIHSETYSVLLDTYITDSEE 187 >gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus] Length = 321 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 6/132 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL+ WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + E LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEYLFNAIE 130 Query: 151 EVPSITAKANWA 162 + I K+ WA Sbjct: 131 TMDFIKKKSEWA 142 >gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6] Length = 342 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K + +++ +L +KY WA++ Y + N W+P E+PM +D ++ L+ E+ Sbjct: 19 KVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQYEK--DLSPYEKR 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F + +S N ++ R+++ PE L Q F+EA+HS+++Q+I+ S+ Sbjct: 77 AYEMVLSFLIALDSYQVN-MLKEFARYITAPELVMALTSQEFQEALHSYSYQFILESVVE 135 Query: 141 DE--GELFNMYRE 151 + E++N +R+ Sbjct: 136 PQVADEIYNYWRQ 148 >gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus cuniculus] Length = 400 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 7/130 (5%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 YG W + + W EV + D+ W++ L ++ER I L FFA+S+ +V Sbjct: 99 YG-IWTRNKKGEASFWTAEEVDLSKDIQHWEA---LKEEERYFISHVLAFFAASDGIVNE 154 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSI 155 N+V + + E R + Q E +HS + +I + D E LFN +P + Sbjct: 155 NLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCV 214 Query: 156 TAKANWALQY 165 KA+WAL++ Sbjct: 215 KKKADWALRW 224 >gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] Length = 352 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 13 PLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDV-- 70 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K LT ER + L F +SL + N+ I +++ E L QAF+E+VH Sbjct: 71 -KDYPRLTAAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESVH 128 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 129 SQSYSYMLDTI 139 >gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] Length = 346 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 15 IDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDI---KDYRLLN 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + E+ + L F +SL N+ + +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 EHEKTAYDKILSFLVFLDSLQTANLP-NVGEYITANEINLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSL 138 S+ Sbjct: 131 DSI 133 >gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 331 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK K L + E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKIK--LLNVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQT 168 + K + L++ ++ Sbjct: 128 MRKKYEYMLEFEES 141 >gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] Length = 353 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A N P+ ++V ++M+N + ++N +KY WA + Y A NN W+P E+ Sbjct: 7 AMNLQRKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEIN 66 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ K L+ E+ + L F +S+ N+ I +++ E L Q Sbjct: 67 LNQDV---KDYRKLSKAEKDAYDKTLSFLIFLDSIQTANLP-NIGEYITANEVNLCLTIQ 122 Query: 121 AFEEAVHSHTFQYIITSL 138 AF+EAVHS ++ Y++ S+ Sbjct: 123 AFQEAVHSQSYSYMLDSI 140 >gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 360 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A + W E+ + DL W LTD+ER IK L FFA+S+ Sbjct: 66 LFPIQEHDVWQMYKKAEASFWTAEELDLVHDLNDWAK---LTDNERHFIKHVLAFFAASD 122 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+ + + PE R + Q E +HS + +I + D E ++ R + Sbjct: 123 GIVNENLAMNFSNEVQIPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIE 182 Query: 154 SI 155 +I Sbjct: 183 TI 184 >gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum E3 str. Alaska E43] gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 344 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N + ++N +KY WA + Y NN W+P E+ + DL +K L +ER Sbjct: 20 KRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLKDYKK---LLPEERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S+ Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAVHSQSYSYMLDSI 133 >gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 348 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 8 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 68 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 123 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 124 HSQSYQYIIESI 135 >gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 344 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 120 HSQSYQYIIESI 131 >gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis] Length = 289 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 8/120 (6%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W + LT +E+ I L FFA+S+ +V N+ + + PE R + Sbjct: 3 EVDLSQDLYQWVN---LTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAFY 59 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS + ++ + D E LFN +P + KA WA+++ Q SS SF Sbjct: 60 GFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQ--SSGSF 117 >gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens] Length = 285 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 2 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 58 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 Q E VHS + +I + D + LFN +P + KA+WAL++ Sbjct: 59 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 109 >gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 2 [Callithrix jacchus] Length = 299 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 16 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 Q E VHS + +I + D + LFN +P + KA+WAL++ Sbjct: 73 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 123 >gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] Length = 360 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 PI +D +RM+ + ++N LKYGW + Y A NN W+P E+ M D+ Sbjct: 21 PIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDVQD 80 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F +S+ N+ + + ++ E L QAF+EA+H Sbjct: 81 YRR---LSPAEKTAYDKILSFLIFLDSVQTANLP-NLAQFITANEVNLCLTIQAFQEAIH 136 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 137 SQSYSYMLDTI 147 >gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a] Length = 342 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +NQ ++ + Y W E+ + +D+A W + ++DE+ I L FFA Sbjct: 32 LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 S + +V N+ + + P+ R + Q E++H T+ +I + D + M R Sbjct: 89 SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148 Query: 151 ---EVPSITAKANWA 162 E+P IT KA W Sbjct: 149 SIQEMPIITKKAQWV 163 >gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Ikeda] gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Ikeda] Length = 359 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 9/123 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LNAR P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ Sbjct: 18 LLNARPIYK---PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLT 72 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLD 141 + FF ++ + NN + Y + P Q +L AF E +H + +++ ++G+ Sbjct: 73 QIFRFFTQAD-IEVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMP 130 Query: 142 EGE 144 E E Sbjct: 131 ETE 133 >gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] Length = 344 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 120 HSQSYQYIIESI 131 >gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris MCS10] gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10] Length = 345 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W +K L D ER ++ + FF S+ Sbjct: 20 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWATK--LNDGERNLLTQIFRFFTQSDVE 77 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L + E +H + ++ ++G+ + E F+ + E ++ Sbjct: 78 VNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQAM 136 Query: 156 TAKANWALQY 165 K ++ ++ Sbjct: 137 ADKHDYMQRF 146 >gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo sapiens] gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) isoform 3 [Pan troglodytes] gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form [Homo sapiens] gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo sapiens] Length = 299 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 16 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 Q E VHS + +I + D + LFN +P + KA+WAL++ Sbjct: 73 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRW 123 >gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] Length = 257 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 15/140 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N++ PL W+ Y N W+ E+ DD W+ K LT+DER L FF + Sbjct: 80 NEISPLD---IWKMYKKTLANQWVVEEIESSDDGLDWEKK--LTNDERDFFSNVLAFFVA 134 Query: 92 SESLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---EL 145 S ++ N+ R +S PE + + Q + +HS T+ +I + D+ +L Sbjct: 135 SCGIINKNL----NRFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKL 190 Query: 146 FNMYREVPSITAKANWALQY 165 FN +P + KA WAL++ Sbjct: 191 FNAIETIPCVKKKAEWALKW 210 >gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] Length = 347 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + +R++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 16 IELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 73 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Boryong] gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Boryong] Length = 329 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 9/123 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LNAR P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ Sbjct: 3 LLNARPIYK---PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLT 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLD 141 + FF ++ + NN + Y + P Q +L AF E +H + +++ ++G+ Sbjct: 58 QIFRFFTQAD-IEVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMP 115 Query: 142 EGE 144 E E Sbjct: 116 ETE 118 >gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D11] Length = 348 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 19/138 (13%) Query: 16 RVNVDDKRMLNARSD---------------VNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +V VD K++ N D + L ++Y WA + Y + N W+P +V Sbjct: 2 KVVVDRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVD 61 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D +++ LT ER L F +S+ NNI I H++ PE L Q Sbjct: 62 LTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQ 117 Query: 121 AFEEAVHSHTFQYIITSL 138 F+EA+HS ++QYII S+ Sbjct: 118 TFQEAIHSQSYQYIIESI 135 >gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 348 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 8 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 68 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 123 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 124 HSQSYQYIIESI 135 >gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 348 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 8 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 68 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 123 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 124 HSQSYQYIIESI 135 >gi|227541|prf||1706181A ribonucleotide reductase Length = 290 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 + W EV + D+ W+S L +ER I L FFA+S+ +V N+V + + Sbjct: 1 SFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT 57 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 E R + Q E +HS + +I + D E LFN +P + KA+WAL++ Sbjct: 58 EARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRW 114 >gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 245 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 19/138 (13%) Query: 16 RVNVDDKRMLNARSD---------------VNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +V VD K++ N D + L ++Y WA + Y + N W+P +V Sbjct: 2 KVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVD 61 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D +++ LT ER L F +S+ NNI I H++ PE L Q Sbjct: 62 LTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQ 117 Query: 121 AFEEAVHSHTFQYIITSL 138 F+EA+HS ++QYII S+ Sbjct: 118 TFQEAIHSQSYQYIIESI 135 >gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 296 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W E+ + DL W + L+ +ER + L FFA+S+ +V N+ Sbjct: 2 YKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNFA 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS T+ +I + D E L + VP + KA+WA Sbjct: 59 TEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASWA 118 Query: 163 LQYTQT 168 LQ+ Sbjct: 119 LQWCDA 124 >gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] Length = 351 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HWMP EVP+ +D W K ++D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E +H + +++ ++G+ E E + M+ E + Sbjct: 70 VQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEEM 128 Query: 156 TAKANW 161 AK ++ Sbjct: 129 KAKHDY 134 >gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] Length = 329 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS LT E+ + ++G+FASSE LV Sbjct: 23 RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 N + + L++P + Q F E +HS F+ I+ + +D ++N+ E Sbjct: 80 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLE 133 >gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 344 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 120 HSQSYQYIIESI 131 >gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] Length = 344 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 120 HSQSYQYIIESI 131 >gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium japonicum USDA 110] gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 14/155 (9%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G+ RV + D DV+ +Y WA+E + HWM EVP+ DL W S Sbjct: 19 GKGRVGLLDS---TGSYDVD-----RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWASGR 70 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHT 130 +TD ER ++ + FF S+ V +N Y + P Q ++ AF E VH Sbjct: 71 -VTDSERALLTQIFRFFTQSDIEVGDN-YFKRYIPIFQPLTVQMMM-AAFTNMETVHIDA 127 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + ++ +LG+ + E F +R + AKA++ ++ Sbjct: 128 YALLLKTLGMPKTE-FEAFRGYAQMRAKADYMHEF 161 >gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] Length = 344 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 120 HSQSYQYIIESI 131 >gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] Length = 344 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 120 HSQSYQYIIESI 131 >gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] Length = 344 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NNI I H++ PE L Q F+EA+HS ++QYII S+ Sbjct: 91 TNNIP-NISEHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESI 131 >gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] Length = 326 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS L+ E+ + +G+FASSE LV Sbjct: 20 RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---LSPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 N + + L++P + Q F E +HS F+ I+ S +D ++N+ E Sbjct: 77 NVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKRIYNITLE 130 >gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] Length = 348 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+N + ++N LKYGW + Y A NN W+P E+ + DL K L Sbjct: 17 TDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEINLGQDL---KDYPKLE 73 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + + + L F +S+ N+ I ++ E L QAF+EAVHS ++ Y++ Sbjct: 74 PAVKTALDKTLSFLIFLDSIQTANLP-NIGEVITANEINLCLTIQAFQEAVHSQSYSYML 132 Query: 136 TSL 138 S Sbjct: 133 DSF 135 >gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit; Contains: RecName: Full=Aae nrdB intein; AltName: Full=Aae RIR2 intein gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] Length = 696 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Query: 29 SDVNQLLPLKYGWAWEKY-LSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 +++ +L +KY WA++ Y L N W+P E+ M +D +++ L+D E+ + L Sbjct: 34 TNIFELNEIKYSWAFDLYKLMGFTNFWIPEEIQMLEDRKQYETV--LSDYEKRAYELVLS 91 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145 F + +S + ++ R ++ PE + Q F+E+VH++++Q+I+ S+ + E+ Sbjct: 92 FLIALDSFQVD-MLKEFGRMITAPEVEMAITAQEFQESVHAYSYQFILESVVDPVKADEI 150 Query: 146 FNMYRE 151 +N +RE Sbjct: 151 YNYWRE 156 >gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma phagocytophilum HZ] gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma phagocytophilum HZ] Length = 323 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + Sbjct: 12 PFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E Sbjct: 69 EVNNCYMKHYSNIFRP-TEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE 118 >gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] Length = 258 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W EV + +D WK L +E+ + L FFA+S+ +V N+V + + PE Sbjct: 3 WTTEEVDLGED---WKDWQKLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIPEA 59 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 + + Q E +HS + +I + D E LFN + +P + KA+WAL++ + Sbjct: 60 KCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS 117 >gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] Length = 352 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 13 PLFNPNGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDV-- 70 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L++ ER + L F +SL + N+ I +++ E L QAF+E+VH Sbjct: 71 -KDYPRLSEAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESVH 128 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 129 SQSYSYMLDTI 139 >gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia chaffeensis str. Arkansas] gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 324 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E Sbjct: 69 EVNNCYMKHYSNIFKP-TEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE 118 >gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia profundicola AmH] gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia profundicola AmH] Length = 346 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 L Y WA+ + N W P EV + +D ++ L E+ M + L +S+ Sbjct: 35 LSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKALSQLIFMDSIQ 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 NN + ++ PE ++RQA+EEA+HS ++ ++ S+ L+ E++ M+R Sbjct: 92 TNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNTDEIYEMWR 145 >gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] Length = 344 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NNI I H++ PE L Q F+EA+HS ++QYII S+ Sbjct: 91 TNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESI 131 >gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] Length = 341 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP++ W +A + W E + D W+ K L ER +K L FFAS++ Sbjct: 11 ILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWRHK--LCVQERFFLKHILAFFASAD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH-----TFQYIITSLGLDEGELFNM 148 ++V N++ + + E R + +Q E VHS F+YI S + +L N Sbjct: 69 TIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNS--EERNKLLNA 126 Query: 149 YREVPSITAKANWALQYTQT 168 + + I KA WAL++T++ Sbjct: 127 FDRIDCIKKKAQWALKWTES 146 >gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 343 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 6/139 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ WA+ Y + N W+P EVPM D+ W ++ L D ER K+ +G A +S V Sbjct: 33 RFPWAYPMYRNMLRNFWIPDEVPMTADIKQWSTE--LGDHERDTFKKVIGLLAFLDS-VQ 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSI 155 + + +L++ + +F+E VH+ ++ Y+++SL ++ E+F ++ + Sbjct: 90 TDYSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKSEQDEIFEYWKTDEVL 149 Query: 156 TAKANW-ALQYTQTLSSPS 173 + ++ A Y + + P+ Sbjct: 150 RERNDFLAAGYQRFVDDPT 168 >gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum rubrum ATCC 11170] gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] Length = 358 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ +DL W S ++D ER ++ + FF S+ V+ Sbjct: 30 RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWASDR-VSDQERNLLTQIFRFFTQSDVEVS 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 +N L Y + P Q ++ AF E +H + ++T+LG+ E F+ +R+ ++ Sbjct: 89 DN-YLKRYMPIFQPLEIQMMM-AAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAM 145 Query: 156 TAKANW 161 KA++ Sbjct: 146 RDKADY 151 >gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 335 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ DD+ W+ L+ E+ ++ + FF ++ Sbjct: 28 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLTQIFRFFTQADVE 85 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 86 V-NNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPESEYSAFMKYKEM 144 >gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi] gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi] Length = 288 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ W+ Y A + W EV + D W++ L D ER I R L FFA+S+ Sbjct: 58 IFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LNDGERHFISRVLAFFAASD 114 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 +V N+V + + PE R + Q E +HS + +I + D+ + Sbjct: 115 GIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHSEMYSKMIDTYIRDQKQ 165 >gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] Length = 347 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ K L + Sbjct: 18 VGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV---KDYRRLREA 74 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + L F +S+ N+ + +++ E L QAF+EAVHS ++ Y++ S Sbjct: 75 EKTAYDKTLSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAVHSQSYSYMLDS 133 Query: 138 L 138 + Sbjct: 134 I 134 >gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] Length = 347 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 16 IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 73 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter bethesdensis CGDNIH1] gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter bethesdensis CGDNIH1] Length = 339 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L HW+P EVP+ DD+ W L + E+ ++ + FF S+ Sbjct: 32 PFRYPWAYEAWLVQQQVHWLPEEVPLADDVKDW--HRNLNEVEQHLVTQIFRFFTQSDVE 89 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 90 V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 147 Query: 152 V 152 + Sbjct: 148 M 148 >gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna ATCC 29328] gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna ATCC 29328] Length = 354 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 23 IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 79 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 80 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 138 Query: 136 TSL 138 ++ Sbjct: 139 DTI 141 >gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica ATCC 49814] gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814] Length = 345 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWAGK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + Y L P E R L + E VH + ++ ++G+ + E F+ + E Sbjct: 79 VGAN-YMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLETIGMPDSE-FSAFMEYEE 136 Query: 155 ITAKANWALQYT 166 + AK ++ +++ Sbjct: 137 MAAKHDYLGKFS 148 >gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] Length = 354 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 23 IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 79 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 80 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 138 Query: 136 TSL 138 ++ Sbjct: 139 DTI 141 >gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis str. Jake] gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake] Length = 324 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E Sbjct: 69 EVNNCYMRHYSNIFKP-TEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE 118 >gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii RML369-C] gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii RML369-C] Length = 324 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] Length = 324 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] Length = 347 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ +K L+ Sbjct: 16 TDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIKDYKQ---LS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 73 EPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQSYSYML 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] Length = 358 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ +K L+ Sbjct: 27 TDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIKDYKQ---LS 83 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 84 EPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQSYSYML 142 Query: 136 TSL 138 ++ Sbjct: 143 DTI 145 >gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str. 'Sheila Smith'] Length = 336 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 12/127 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLGFF 89 P Y WA+E + + HW+P EVP+ DD+ WK K+ LT E+ ++ + FF Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFRFF 71 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL-- 145 ++ + NN + Y + P ++ AF E VH + +++ ++G+ E E Sbjct: 72 TQAD-IEVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSA 129 Query: 146 FNMYREV 152 F Y+E+ Sbjct: 130 FLKYKEM 136 >gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia conorii str. Malish 7] gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. Iowa] gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia africae ESF-5] gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii str. Malish 7] gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia rickettsii str. Iowa] gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae ESF-5] gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] Length = 328 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTV 129 >gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTV 129 >gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 347 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ ++ L + Sbjct: 18 VGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDVKDYRR---LHEA 74 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + L F +S+ N+ + +++ E L QAF+EAVHS ++ Y++ S Sbjct: 75 EKTAYDKTLSFLIFLDSIQTANLP-NVGEYVTANEVNLCLTIQAFQEAVHSQSYSYMLDS 133 Query: 138 L 138 + Sbjct: 134 I 134 >gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia massiliae MTU5] gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia massiliae MTU5] Length = 336 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 13 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 70 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 128 Query: 152 V 152 + Sbjct: 129 M 129 >gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] Length = 348 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT +P + R+ KRM+ + ++N +KY W + Y A NN W+P E+ + Sbjct: 8 NTLFNPSGDTDLRL----KRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLS 63 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D +K L ER + L F +SL +NN+ + +++ E L QAF Sbjct: 64 QD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHIQAF 119 Query: 123 EEAVHSHTFQYIITSL 138 +E +HS ++ Y++ ++ Sbjct: 120 QECIHSQSYSYMLDTI 135 >gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] Length = 363 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 V + +RM+ + ++N LKY W E Y A NN W+P E+ M D+ ++ L+ Sbjct: 32 VELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTDVQDYRK---LS 88 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ Sbjct: 89 KAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQEAVHSQSYSYML 147 Query: 136 TSL 138 ++ Sbjct: 148 DTI 150 >gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 327 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] Length = 347 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G+ VN+ +RM+ + ++N +KY W Y A NN W+P E+ M D+ K Sbjct: 14 GDTEVNL--RRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDI---KDY 68 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L + ER + L F +S+ N+ I ++++ E L Q F+EAVHS ++ Sbjct: 69 PELPEAERTAYDKILSFLIFLDSIQTANLP-NIGQYITANEVNLCLTIQGFQEAVHSQSY 127 Query: 132 QYIITSL 138 Y++ ++ Sbjct: 128 SYMLDTI 134 >gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTV 129 >gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTV 129 >gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTV 129 >gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] Length = 352 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HWMP EVP+ +D W K LT+ ER ++ + FF ++ Sbjct: 12 PFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--LTEHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLDYEEM 128 Query: 156 TAKANWALQY 165 K N+ Q+ Sbjct: 129 ADKHNYMQQF 138 >gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit [Clostridium botulinum H04402 065] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] Length = 351 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + V ++M+ + ++N +KY WA E Y A NN W+P E+ M D+ ++ L+ Sbjct: 20 IEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEINMNADVQDYRK---LS 76 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ Sbjct: 77 PAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQEAVHSQSYSYML 135 Query: 136 TSL 138 ++ Sbjct: 136 DTI 138 >gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 3502] gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium botulinum A str. ATCC 3502] gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 347 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N +KY WA Y A NN W+P E+ + D+ K L+ ER Sbjct: 21 RRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDV---KDYRNLSAAERE 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +S+ N+ I ++++ E L Q F+EAVHS ++ Y++ S+ Sbjct: 78 AFDKILSFLVFLDSIQTANLP-CIGQYITANEVNLCLTIQGFQEAVHSQSYSYMLDSI 134 >gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium botulinum Ba4 str. 657] gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 342 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWRE 144 >gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 342 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ DD+ W + LT E+ ++ + FF ++ Sbjct: 35 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDW--QKNLTQSEKNLLTQIFRFFTQADVE 92 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V N L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 93 V-QNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESEYSAFMKYKEM 151 >gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis alaskensis RB2256] gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis RB2256] Length = 354 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D W K ++D ER ++ + FF ++ Sbjct: 12 PFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E + M+ E + Sbjct: 70 VQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFLEYDEM 128 Query: 156 TAKANWALQY 165 AK ++ Q+ Sbjct: 129 RAKHDYMQQF 138 >gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Pelagibacter ubique HTCC1062] gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus Pelagibacter ubique HTCC1062] Length = 337 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ DD+ W + LT E+ ++ + FF ++ Sbjct: 30 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDW--QKNLTQSEKNLLTQIFRFFTQADVE 87 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V N L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 88 V-QNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESEYSAFMKYKEM 146 >gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] Length = 347 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 69/131 (52%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V ++RM+N + ++N ++Y W + Y A NN W+P E+ + D + Sbjct: 8 PLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDKSD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L++ ER + L F +SL + N+ I ++++ E L Q F+E +H Sbjct: 68 YPK---LSEAERRAYDKILSFLVYLDSLQSANLP-NISQYVTANEVNLCLSIQTFQECIH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 124 SQSYSYMLDTI 134 >gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] Length = 342 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 69/126 (54%), Gaps = 6/126 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 +++ +L +KY WA++ Y + N W+P E+ M +D ++ L+ E+ + L Sbjct: 26 TNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQYE--RVLSAHEKRAYEMVLS 83 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145 F + +S N ++ R L+ PE + Q F+EA+HS+++Q+I+ S+ + E+ Sbjct: 84 FLIALDSYQVN-MLKEFARFLTAPELTMAITAQEFQEALHSYSYQFILESVVDPVKADEI 142 Query: 146 FNMYRE 151 +N +RE Sbjct: 143 YNYWRE 148 >gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] Length = 346 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y WA+ KY N W P E+ M D+ K LTD E+ + +G A +S + Sbjct: 36 IAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAFLKIIGLLALLDS-I 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + + ++++P ++ A +E +H+H++ Y+++SL + E+F+ +R P+ Sbjct: 92 QTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKAKQDEVFDFWRNEPT 151 Query: 155 ITAKANWA 162 + + ++ Sbjct: 152 LRKRNDFV 159 >gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3] gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3] Length = 346 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y WA+ KY N W P E+ M D+ K LTD E+ + +G A +S + Sbjct: 36 IAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAFLKIIGLLALLDS-I 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + + ++++P ++ A +E +H+H++ Y+++SL + E+F+ +R P+ Sbjct: 92 QTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKAKQDEVFDFWRNEPT 151 Query: 155 ITAKANWA 162 + + ++ Sbjct: 152 LRKRNDFV 159 >gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus kaustophilus HTA426] Length = 346 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y WA+ KY N W P E+ M D+ K LTD E+ + +G A +S + Sbjct: 36 IAYPWAYAKYKRMLANFWTPFEINMAQDV---KQFPQLTDREQDAFLKIIGLLALLDS-I 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + + ++++P ++ A +E +H+H++ Y+++SL + E+F+ +R P+ Sbjct: 92 QTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKAKQDEVFDFWRNEPT 151 Query: 155 ITAKANWA 162 + + ++ Sbjct: 152 LRKRNDFV 159 >gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] Length = 313 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E Y A W EV + D ++ K L +D+R I LGFF++++ Sbjct: 8 LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + + + E + QA E VH+ + +I +L D+ + + N + Sbjct: 66 SIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAFD 125 Query: 151 EVPSITAKANWALQYTQ 167 +P + K +WAL++T+ Sbjct: 126 NIPCVRKKDDWALKWTK 142 >gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana] Length = 231 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D W+ N LT+DER Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 IK L FFA+S+ +V N+ + E R + Q E +HS Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSE 112 >gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 347 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ ++M+N + ++N +KY W + Y A NN W+P E+ + D+ K L+ Sbjct: 16 IELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDI---KDYRKLS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +S+ N+ I +++ E L QA++EA+HS ++ YI+ Sbjct: 73 KEEKNAYDKILSFLVFLDSIQTANLP-NIGEYITANEVNLCLTIQAYQEAIHSQSYGYIL 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] Length = 352 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y N W+P V + D+ +K LTDDER L F +S+ Sbjct: 42 IKYPWATKLYRVMMANFWIPETVDLTQDVQDYKE---LTDDERQAYDEILSFLVFLDSIQ 98 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154 NI I ++ PE L A++EA+HS ++ Y I S+ E E++ +++ P Sbjct: 99 TTNIP-NIAAYVKAPEITIDLSIHAYQEAIHSQSYGYTIESVVPAEKREEVYYWWKKDPI 157 Query: 155 ITAKANW-ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + + + A Y + L P+ + + L L F Sbjct: 158 LFERNKYIADIYQKFLEEPTLENYGEVLIGNYLLEGLYF 196 >gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] Length = 350 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KRM+N + ++N +KY W + Y A NN W+P E+ + DL K + L ER Sbjct: 24 KRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDL---KDYSKLLPAERT 80 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +S+ N+ + +++ E L Q F+EAVHS ++ Y++ ++ Sbjct: 81 AYDKILSFLIFLDSIQTANLP-NVSEYITASEVNLCLNIQTFQEAVHSQSYSYMLDTI 137 >gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] Length = 349 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++M+N + ++N +KY W E Y +A NN W+P E+ + DL +K L Sbjct: 15 IELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLKDYKI---LD 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + E+ + L F +S+ N+ I +++ E L QA++EA+HS ++ Y++ Sbjct: 72 EYEKTAFDKVLSFLIFLDSIQTANLPY-IGEYITANEINLCLTIQAYQEAIHSQSYGYML 130 Query: 136 TSL 138 S+ Sbjct: 131 DSI 133 >gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides vulgatus ATCC 8482] gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides vulgatus ATCC 8482] gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] Length = 349 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D K Sbjct: 15 EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ER + L F +SL +NN+ I +++ E L QAF+E VHS ++ Sbjct: 72 HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130 Query: 133 YIITSL 138 Y++ S+ Sbjct: 131 YMLDSI 136 >gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] Length = 350 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + R E + L + E VH + +++ ++G+ E E F Y+E+ Sbjct: 70 VQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESEYSAFMQYKEM 128 >gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella denticola F0289] gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola F0289] Length = 348 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT +P + R+ +RM+ + ++N +KY W + Y A NN W+P E+ + Sbjct: 8 NTLFNPSGDTDLRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLS 63 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D +K L ER + L F +SL +NN+ + +++ E L QAF Sbjct: 64 QD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHIQAF 119 Query: 123 EEAVHSHTFQYIITSL 138 +E +HS ++ Y++ ++ Sbjct: 120 QECIHSQSYSYMLDTI 135 >gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] Length = 348 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT +P + R+ +RM+ + ++N +KY W + Y A NN W+P E+ + Sbjct: 8 NTLFNPSGDTDLRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLS 63 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D +K L ER + L F +SL +NN+ + +++ E L QAF Sbjct: 64 QD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHIQAF 119 Query: 123 EEAVHSHTFQYIITSL 138 +E +HS ++ Y++ ++ Sbjct: 120 QECIHSQSYSYMLDTI 135 >gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium bathyomarinum JL354] Length = 354 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W K L++ ER ++ + FF ++ Sbjct: 12 PFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQK--LSEHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E +H + +++ ++G+ E E + M+ E + Sbjct: 70 VQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKHDYLQQF 138 >gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella succinogenes] Length = 283 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 47/78 (60%) Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT E+L R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ Sbjct: 11 GLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYA 70 Query: 133 YIITSLGLDEGELFNMYR 150 ++ S+ + E++ M+R Sbjct: 71 VMVESISANTDEIYEMWR 88 >gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] Length = 346 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L AR N P +Y WA+E + HWMP EVP+ +D W LT+ ER ++ Sbjct: 3 LLEAR---NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDW--AQNLTEHERNLLT 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + FF ++ V + R E + L + E VH + +++ ++G+ E Sbjct: 58 QIFRFFTQADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPES 117 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ + + + K N+ Q++ Sbjct: 118 E-YSAFLDYEEMADKHNYMHQFS 139 >gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. D4] gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides dorei 5_1_36/D4] gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] Length = 349 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D K Sbjct: 15 EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ER + L F +SL +NN+ I +++ E L QAF+E VHS ++ Sbjct: 72 HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130 Query: 133 YIITSL 138 Y++ S+ Sbjct: 131 YMLDSI 136 >gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] Length = 349 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D K Sbjct: 15 EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ER + L F +SL +NN+ I +++ E L QAF+E VHS ++ Sbjct: 72 HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130 Query: 133 YIITSL 138 Y++ S+ Sbjct: 131 YMLDSI 136 >gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] Length = 347 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N +KY WA + Y A NN W+P E+ + D K L ER Sbjct: 21 RRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDT---KDYPRLDKAERT 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL +NN+ ++ +++ E L QAF+E VHS ++ Y++ ++ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-SLCEYITANEVNLCLHIQAFQECVHSQSYSYMLDTI 134 >gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] Length = 348 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N +KY W + Y A NN W+P E+ + D +K L ER Sbjct: 22 RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLSQD---FKDYPRLDKAERT 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL +NN+ + +++ E L QAF+E +HS ++ Y++ ++ Sbjct: 79 AYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHIQAFQECIHSQSYSYMLDTI 135 >gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] Length = 348 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 9/136 (6%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT +P E R+ +RM+ + ++N +KY W + Y A NN W+P E+ + Sbjct: 8 NTLFNPSGDIELRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLS 63 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D +K L ER + L F +SL +NN+ + +++ E L QAF Sbjct: 64 QD---FKDYPRLEKAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAF 119 Query: 123 EEAVHSHTFQYIITSL 138 +E +HS ++ Y++ ++ Sbjct: 120 QECIHSQSYSYMLDTI 135 >gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 347 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ +V ++RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L+ E+ + L F +S+ N+ + +++ E L QAF+EA+H Sbjct: 66 -KDYRRLSQAEKNAYDKTLSFLIFLDSIQTANLP-NVGDYITANEVNLCLTIQAFQEALH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ S+ Sbjct: 124 SQSYSYMLDSI 134 >gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] Length = 344 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NN V I +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 91 TNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESI 131 >gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. 3_1_5R] gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] Length = 344 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NN V I +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 91 TNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESI 131 >gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] Length = 30 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/25 (96%), Positives = 25/25 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRML 25 MANNTGLSPIQAGEKRVNVDDKR+L Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRIL 25 >gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] Length = 351 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 Q P +Y WA+E + HW+P EVP+ +D W K LTD ER ++ + FF Sbjct: 8 KQYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQ 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 ++ V + R E + L + E VH + +++ ++G+ E E Sbjct: 66 ADVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE 118 >gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 342 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + N+ + R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 89 SENLP-NLSRYITASEVASLLNIQTFQEEIHAQSYSYILDTV 129 >gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus] Length = 419 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y ++ Y W+ E+ M D W + + DE+ +K L FFAS + +V Sbjct: 116 EYADVFQLYKKQTALFWVVEEIDMSGDSKDW---DDASSDEKHFLKLVLAFFASLDQIVM 172 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PS 154 NI L + P+ RQ+ Q EAVH ++ +I + D E ++ R + P Sbjct: 173 ENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPI 232 Query: 155 ITAKANWA 162 I KA WA Sbjct: 233 IEKKALWA 240 >gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D12] Length = 348 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 38 VKFSWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NN+ I +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 95 TNNLP-NISDYITAPEVNLLLSIQTFQEAIHSQSYQYIIESI 135 >gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] Length = 344 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VKFSWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NN+ I +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 91 TNNLP-NISDYITAPEVNLLLSIQTFQEAIHSQSYQYIIESI 131 >gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas wittichii RW1] gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1] Length = 350 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K LTD ER ++ + FF ++ Sbjct: 12 PFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + R E + L + E VH + +++ ++G+ E E F Y+E+ Sbjct: 70 VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETEYSAFLQYKEM 128 >gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 395 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y + K+ +HW+P EVPM DD+ W N L D+++ + FF + Sbjct: 12 PFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDW--NNRLDDNQKKFLTNIFRFFTQGDVD 69 Query: 96 VANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA + PE ++ A EAVH + ++I +LG+ E + YRE Sbjct: 70 VAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPE----STYRE 122 >gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] Length = 351 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + R E + L + E VH + +++ ++G+ E E F Y+E+ Sbjct: 70 VQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESEYSAFMQYKEM 128 >gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor alocis ATCC 35896] Length = 348 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + +RM+N + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 17 IELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEINLTQDI---KDYRNLE 73 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +SL N+ + ++ E L QA++EA+HS ++ YI+ Sbjct: 74 IEEKEAYDKILSFLIFLDSLQTANLP-NVGEFITANEVNLCLTIQAYQEAIHSQSYGYIL 132 Query: 136 TSLGLDE--GELFNMYREVPSITAK 158 S+ E E+ +++ P + A+ Sbjct: 133 DSICSPEERTEILYQWKDDPFLLAR 157 >gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] Length = 349 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y WA + Y A NN W+P E+ + D K L ER Sbjct: 23 RRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINLAQDT---KDYPRLDKAERA 79 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL +NN+ I +++ E L QAF+E VHS ++ Y++ ++ Sbjct: 80 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDTI 136 >gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402] Length = 351 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ ++ L+ Sbjct: 20 IETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQDYRK---LS 76 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ Sbjct: 77 GPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAVHSQSYSYML 135 Query: 136 TSL 138 ++ Sbjct: 136 DTI 138 >gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] Length = 324 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus thermodenitrificans NG80-2] gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus thermodenitrificans NG80-2] gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] Length = 344 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 7/142 (4%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+N R S+V + Y WA+ KY N W P E+ M D+ + D L I Sbjct: 20 MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQFPQLTAREQDAFLKI 79 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 L S ++ A + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 80 IGLLALLDSIQTDYAGRVA----DYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135 Query: 141 DEGELFNMYREVPSITAKANWA 162 + E+F+ +R P++ + ++ Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFV 157 >gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis 638R] gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis 638R] Length = 349 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 9/139 (6%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + N +P E R+ ++M+ + ++N ++Y W + Y A NN W+P E+ Sbjct: 6 LKKNALFNPEGDTETRL----RKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEI 61 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K LT ER + L F +SL +NN+ + +++ E L Sbjct: 62 NLTQDT---KDYPHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 117 Query: 120 QAFEEAVHSHTFQYIITSL 138 QAF+E VHS ++ Y++ S+ Sbjct: 118 QAFQECVHSQSYSYMLDSI 136 >gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] Length = 347 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N L+Y W Y A NN W+P E+ + D+ K LT++ER Sbjct: 21 RRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDI---KDYPNLTENERT 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +S+ N+ I +++ E L Q F+E VHS ++ Y++ S+ Sbjct: 78 AYNKILSFLVFLDSIQTANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYMLDSI 134 >gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] Length = 347 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 16 TDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDI---KDYRKLP 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +SL + N+ A+ +++ E L Q F+E VHS ++ Y++ Sbjct: 73 ASERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETVHSQSYSYML 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] Length = 349 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V ++R++N + ++N +KY W + Y A NN W+P E+ + D + Sbjct: 10 PLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEINLNQDKSD 69 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L+ E+ + L F +SL + N+ I ++++ E L Q F+E +H Sbjct: 70 YPR---LSLAEKTAYDKILSFLVYLDSLQSANLP-NISQYITANEVNLCLSIQTFQECIH 125 Query: 128 SHTFQYIITSL 138 S ++ Y++ S+ Sbjct: 126 SQSYSYMLDSI 136 >gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] Length = 347 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ S ++N ++Y W + Y A NN W+P E+ + D+ K L ER Sbjct: 21 RRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPAAERK 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL +NN+ I +++ E L Q F+E VHS ++ Y++ ++ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECVHSQSYSYMLDTI 134 >gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] Length = 354 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ + +D+ K + LT ER + + F +S+ Sbjct: 44 IKYDWANVMYRTMLNNFWIPEEISLGEDI---KQFSYLTAGERKAFDKIISFLNFLDSIQ 100 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153 N+ + R+++ E L QAF+E +H+ ++ YI+ ++ + ++++ +RE P Sbjct: 101 CENLP-NLARYITAAEVASLLNVQAFQEEIHAQSYSYILDTVTNPVTRDKIYDEWREDP 158 >gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] Length = 351 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + R E + L + E VH + +++ ++G+ E E F Y+E+ Sbjct: 70 VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETEYSAFMQYKEM 128 >gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis URRWXCal2] gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis URRWXCal2] Length = 327 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK L E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLAPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 345 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ +D+ W+ K L E+ ++ + FF ++ Sbjct: 35 PFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQKK--LLPHEKNLLTQIFRFFTQADVE 92 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 93 V-NNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIGMPETEYSAFLKYKEM 151 >gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] Length = 347 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y W + Y A NN W+P E+ + D+ K L ER Sbjct: 21 RRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPPAERK 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL +NN+ I +++ E L Q F+E VHS ++ Y++ S+ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECVHSQSYSYMLDSI 134 >gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] Length = 346 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + +V ++RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINLGPDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ AI +++ E L Q F+EAVH Sbjct: 66 -KDYPMLDAGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQTFQEAVH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 124 SQSYSYMLDTI 134 >gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 344 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 11/132 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++ WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSL 138 HS ++QYII S+ Sbjct: 120 HSQSYQYIIESI 131 >gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] Length = 353 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + +V +RM+ + ++N LKY WA E Y A NN W+P E+ + D+ Sbjct: 14 PLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEINLSQDI-- 71 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L+ ER + L F +S+ N+ + +++ E L Q F+E VH Sbjct: 72 -KDYPNLSPAERKAYDKILSFLVFLDSIQTANLP-CVGEYITANEVNLCLNIQTFQECVH 129 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 130 SQSYSYMLDTI 140 >gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] Length = 347 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ K LT Sbjct: 16 TDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDV---KDYPLLT 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ N+ AI +++ E L Q F+EAVHS ++ Y++ Sbjct: 73 VGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHSQSYSYML 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] Length = 342 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P E+P+ +D+ W+ LT E+ ++ + FF ++ Sbjct: 32 PFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEKNLLTQIFRFFTQADVE 89 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN L Y + P E + A E +H + +++ ++G+ E E F Y+E+ Sbjct: 90 V-NNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIGMPESEYSAFLKYKEM 148 >gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis NCTC 9343] gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis NCTC 9343] Length = 349 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N ++Y W + Y A NN W+P E+ + D K LT ER + L F Sbjct: 31 TNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDT---KDYPHLTPAERTAYDKILSF 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +SL +NN+ + +++ E L QAF+E VHS ++ Y++ S+ Sbjct: 88 LVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHSQSYSYMLDSI 136 >gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] Length = 327 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] Length = 347 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ K LT Sbjct: 16 TDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDV---KDYPLLT 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ N+ AI +++ E L Q F+EAVHS ++ Y++ Sbjct: 73 VGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHSQSYSYML 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] Length = 349 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L ER Sbjct: 23 RRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPQAERT 79 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL +NN+ I +++ E L Q F+E +HS ++ Y++ ++ Sbjct: 80 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECIHSQSYSYMLDTI 136 >gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ZM4] gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 345 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + R E + L + E VH + +++ ++G+ E E F Y+E+ Sbjct: 70 VQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETEYSAFLQYKEM 128 >gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 290 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W EV M D + + LT +E+ IK L FFA+S+ +V N+V + E Sbjct: 7 WTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEA 63 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 + + Q E +HS + +I +L D+ E LFN +PSI KA WA ++ + + Sbjct: 64 KMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDT 123 Query: 171 S 171 S Sbjct: 124 S 124 >gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum str. Nichols] gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum SS14] gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema pallidum subsp. pallidum SS14] gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 351 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 7/129 (5%) Query: 11 QAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +AG+ + + +RM+ + ++N +KY W + Y A NN W+P E+ M D+ ++ Sbjct: 16 EAGD--IELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYR 73 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + L+ E+ + L F +S+ N+ I ++++ E L QAF+EAVHS Sbjct: 74 N---LSAIEKTAYDKILSFLIFLDSIQTANLP-NIGQYITANEINLCLTIQAFQEAVHSQ 129 Query: 130 TFQYIITSL 138 ++ Y++ ++ Sbjct: 130 SYSYMLDTI 138 >gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella lenta DSM 2243] gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243] gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] Length = 347 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 16 TDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDI---KDYRKLP 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +SL + N+ A+ +++ E L Q F+E VHS ++ Y++ Sbjct: 73 AAERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETVHSQSYSYML 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] Length = 347 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y W + Y A NN W+P E+ + D K L ER+ Sbjct: 21 RRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPLLDKAERV 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL +NN+ + +++ E L QAF+E VHS ++ Y++ S+ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHSQSYSYMLDSI 134 >gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia psychrerythraea 34H] gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea 34H] Length = 376 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 42 AWEKYLSA-CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 A+EK + + W P EV + D A W+S LTD E+ + NL + +S+ A ++ Sbjct: 36 AFEKLIEKQLSFFWRPEEVDVSKDRADWQS---LTDSEKHIFISNLKYQTLLDSMAARSV 92 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + +S PE ++ AF E +HS ++ +I+ +L + GE+F+ P+I +A+ Sbjct: 93 NAVLLPLVSLPEVETWVETWAFSETIHSRSYTHILRNLFTEPGEIFDDIIVNPAILKRAS 152 >gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] Length = 368 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + V +RM+N + ++N +KY W + Y A NN W+P E+ + D Sbjct: 29 PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDR-- 86 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L+ ER + L F +S+ N+ A+ +++ E L Q F+EAVH Sbjct: 87 -KDYPLLSPQERRAYDKILSFLVFLDSIQTANLP-ALGEYVTANEINLCLSIQTFQEAVH 144 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 145 SQSYSYMLDTI 155 >gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] Length = 352 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ +++ Sbjct: 18 EGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRN-- 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS ++ Sbjct: 76 -LSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHSQSYS 133 Query: 133 YIITSL 138 YI+ ++ Sbjct: 134 YILDTI 139 >gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus] Length = 338 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 7/114 (6%) Query: 56 PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 P+E V + D+ W++ L +ER I L FFA+S+ +V N+V + + E R Sbjct: 52 PSEPVDLSKDIQHWEA---LKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 108 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + Q E +HS + +I + D E LFN +P + KA+WAL++ Sbjct: 109 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRW 162 >gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] Length = 347 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%) Query: 12 AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +G+ +VN +RM+ + ++N +KY W + Y A NN W+P E+ M D+ K Sbjct: 13 SGDTQVN--KRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDI---KD 67 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L ER + L F +S+ N+ I +++ E L Q F+EAVHS + Sbjct: 68 YRKLPQAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAVHSQS 126 Query: 131 FQYIITSL 138 + Y++ ++ Sbjct: 127 YSYMLDTI 134 >gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos taurus] gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] Length = 341 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 7/114 (6%) Query: 56 PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 P+E V + D+ W++ L +ER I L FFA+S+ +V N+V + + E R Sbjct: 55 PSEPVDLSKDIQHWEA---LKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 111 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165 + Q E +HS + +I + D E LFN +P + KA+WAL++ Sbjct: 112 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRW 165 >gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1] gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1] Length = 419 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y ++ Y W+ E+ + D W+ + DE+ +K L FFAS + +V Sbjct: 116 EYADVFQLYKKQTALFWVVEEIDLSGDSKDWEDASS---DEKHFLKLVLAFFASLDQIVM 172 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PS 154 NI L + P+ RQ+ Q EAVH ++ +I + D E ++ R + P Sbjct: 173 ENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPI 232 Query: 155 ITAKANWA 162 I KA WA Sbjct: 233 IEKKALWA 240 >gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema denticola ATCC 35405] gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema denticola ATCC 35405] Length = 351 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ ++ L+ Sbjct: 20 IETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQDYRK---LS 76 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ Sbjct: 77 IPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAVHSQSYSYML 135 Query: 136 TSL 138 ++ Sbjct: 136 DTI 138 >gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 346 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 V + ++M+N + ++N +KY W + Y + NN W+P E+ M D+ +++ L Sbjct: 15 VELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQDIKDYRN---LD 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ I + + E L QA++EA+HS ++ YI+ Sbjct: 72 FHEKKAYDKILSFLIFLDSIQTANLP-NISDYTTANEVNLILTIQAYQEAIHSQSYSYIL 130 Query: 136 TSLG 139 ++ Sbjct: 131 DTIA 134 >gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] Length = 326 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 12/179 (6%) Query: 18 NVD-DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+D ++ +L + + + P+KY W+ Y W E+ D +K L Sbjct: 3 NLDMNEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFKK---LNQ 59 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FF++S+++V N+ + + E + Q E +HS + I Sbjct: 60 DEQRFIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQID 119 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 ++ D E + N VP I AK +W L++ ++ S + R +++++ L F Sbjct: 120 NIIEDVQERKDILNSIETVPCIKAKTDWMLKWVKSEES-----FATRMVAQVISEGLFF 173 >gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing bacterium SS3/4] Length = 346 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 PLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 64 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 65 -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 122 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 123 SQSYSYMLDTI 133 >gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 352 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ +++ Sbjct: 18 EGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEINLNQDIKDYRN-- 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS ++ Sbjct: 76 -LSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHSQSYS 133 Query: 133 YIITSL 138 YI+ ++ Sbjct: 134 YILDTI 139 >gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis YCH46] gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis YCH46] Length = 349 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 9/139 (6%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + N +P E R+ ++M+ + ++N ++Y W + Y NN W+P E+ Sbjct: 6 LKKNALFNPEGDTETRL----RKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEI 61 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K LT ER + L F +SL +NN+ + +++ E L Sbjct: 62 NLTQDT---KDYPHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 117 Query: 120 QAFEEAVHSHTFQYIITSL 138 QAF+E VHS ++ Y++ S+ Sbjct: 118 QAFQECVHSQSYSYMLDSI 136 >gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia prowazekii str. Madrid E] gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi str. Wilmington] gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia prowazekii] gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington] gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia prowazekii Rp22] Length = 324 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ D+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 NN + Y + P ++ AF E VH + +++ ++G+ E E F Y+E Sbjct: 69 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVEYSAFLKYKE 127 Query: 152 V 152 + Sbjct: 128 M 128 >gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] Length = 349 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N ++Y W + Y A NN W+P E+ + D K L + ER + L F Sbjct: 31 TNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPLLDEAERTAYDKILSF 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +SL +NN+ I +++ E L QAF+E VHS ++ Y++ ++ Sbjct: 88 LVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDTI 136 >gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 345 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y + W V ++ DL W +TD+ER I L F A+S Sbjct: 50 IFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDWMR---MTDEERHFISYILAFLAASN 106 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V+ N+V + + E R + Q E +HS + +I + D E L N Sbjct: 107 GIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLIDTYIKDPKEKETLINATE 166 Query: 151 EVPSITAKANWALQY 165 +P + A+W L++ Sbjct: 167 TMPCVKKMADWVLKW 181 >gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] Length = 347 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E + V ++M+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIKD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K L ER + L F +S+ N+ I +++ E L Q F+EAVH Sbjct: 68 YKM---LPAAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAVH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 124 SQSYSYMLDTI 134 >gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter curvus 525.92] gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter curvus 525.92] Length = 340 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV DD+ + LTD Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTD 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHSKSYAVMVE 131 Query: 137 SL 138 ++ Sbjct: 132 AI 133 >gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] Length = 346 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + +R++N + ++N +KY W Y +A NN W+P E+ + D+ K L+ Sbjct: 15 IELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDV---KDYRILS 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 KAEKTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSL 138 ++ Sbjct: 131 DTI 133 >gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] Length = 347 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V +R++ + ++N LKY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ + N+ + +++ E L Q+F+E VH Sbjct: 66 -KDYRQLPAAERRAYDKILSFLVFLDSVQSANLP-NVSAYITANEVDLCLTIQSFQECVH 123 Query: 128 SHTFQYIITSLG 139 S ++ Y++ ++ Sbjct: 124 SQSYSYMLDTIA 135 >gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W++ LT D Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 E+ I L FFA+S+ +V N+ + + E R + Q E +HS Sbjct: 60 EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSE 111 >gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] Length = 348 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 5/139 (3%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M+ P+ E ++V +R+LN +++N +KY W Y A NN W+P E+ Sbjct: 1 MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + + + L+ ER + L F +SL + N+ I +++ E L Sbjct: 61 NLNQDKSDYLN---LSLAERSAYDKILSFLVYLDSLQSANLP-NIASYVTANEVNLCLSI 116 Query: 120 QAFEEAVHSHTFQYIITSL 138 Q F+E +HS ++ Y++ S+ Sbjct: 117 QTFQECIHSQSYSYMLDSI 135 >gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYT 166 E +HS + ++ + D E LF+ VP + KA WAL++ Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI 103 >gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-A] Length = 313 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E Y A W EV + D ++ K L +D+R I LGFF++++ Sbjct: 8 LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + + + E + QA E VH+ + +I L D+ + N + Sbjct: 66 SIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILNAFD 125 Query: 151 EVPSITAKANWALQYTQ 167 VP + K +WAL++ + Sbjct: 126 NVPCVRKKDDWALKWIE 142 >gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYT 166 E +HS + ++ + D E LF+ VP + KA WAL++ Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI 103 >gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 352 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ L +KY WA + Y N W+P V + D+ +K LT+DER L F Sbjct: 34 TNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLDYKE---LTEDERQAYDEILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ NI I ++ PE L A++EA+HS ++ Y I S+ Sbjct: 91 LVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIHSQSYGYTIESV 139 >gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] Length = 349 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N + Y W + Y A NN W+P E+ + D K L ER + L F Sbjct: 31 TNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPHLDKAERTAYDKILSF 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +SL +NN+ I +++ E L QAF+E VHS ++ Y++ S+ Sbjct: 88 LVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDSI 136 >gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex echinatior] Length = 176 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + P++Y W+ Y A + W EV + + D W K L DE+ I L FFA+S Sbjct: 66 IFPIQYPDIWDMYKKAVASFWTIEEVSLHKQDKKDWNEK--LNSDEKRFISHVLAFFAAS 123 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 + +V N++ + + PE R + Q E +HS + +I + D E Sbjct: 124 DGIVNENLIEKFSQEVKIPEARCFYGFQIAIENIHSEMYSLLIETYISDPKE 175 >gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W Y + W EV M D+ W++ + +R K+ L FF ++ Sbjct: 14 IFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVVAD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 71 EIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIE 130 Query: 151 EVPSITAKANWALQY 165 + P I A W Q+ Sbjct: 131 KHPIIKKMAQWVRQW 145 >gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 14 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKSQREFYKQILAFFVV 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 69 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128 Query: 149 YREVPSITAKANWALQY 165 + P I A W Q+ Sbjct: 129 IEKHPIIKKMAQWVRQW 145 >gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium prausnitzii SL3/3] Length = 347 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 66 -KDYPRLLSTERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 124 SQSYSYMLDTI 134 >gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] Length = 313 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E Y A W EV + D ++ K L +D+R I LGFF++++ Sbjct: 8 LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + + + E + QA E VH+ + +I +L D+ + + N + Sbjct: 66 SIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAFD 125 Query: 151 EVPSITAKANWALQYTQ 167 + + K +WAL++T+ Sbjct: 126 NISCVRKKDDWALKWTK 142 >gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus Benin 97/1] Length = 327 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 14 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 69 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128 Query: 149 YREVPSITAKANWALQY 165 + P I A W Q+ Sbjct: 129 IEKHPIIKKMAQWVRQW 145 >gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus OURT 88/3] gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75] gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1] Length = 334 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 21 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 75 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 76 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 135 Query: 149 YREVPSITAKANWALQY 165 + P I A W Q+ Sbjct: 136 IEKHPIIKKMAQWVRQW 152 >gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 14 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 69 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128 Query: 149 YREVPSITAKANWALQY 165 + P I A W Q+ Sbjct: 129 IEKHPIIKKMAQWVRQW 145 >gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small Length = 334 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 21 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 75 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 76 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 135 Query: 149 YREVPSITAKANWALQY 165 + P I A W Q+ Sbjct: 136 IEKHPIIKKMAQWVRQW 152 >gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] Length = 347 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+ + ++N ++YGW + Y A NN W+P E+ + D K L Sbjct: 16 TDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDR---KDYGELL 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ + N+ I +++ E L Q F+E VHS ++ Y++ Sbjct: 73 GKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYML 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 347 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 66 -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 124 SQSYSYMLDTI 134 >gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500] Length = 1292 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 +D+ W+ K L D+ER +I LGFF S ++ NI+ + PE R + Q Sbjct: 62 NDVRDWQCK--LDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQIA 119 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQ 164 E + S + +I + D E +FN +P + K W L+ Sbjct: 120 MENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLK 164 >gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] Length = 347 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 7/128 (5%) Query: 12 AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 AG+ V + +R++ + ++N +KY W + Y A NN W+P E+ + D+ +++ Sbjct: 13 AGDTEVRL--RRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVRDYRT 70 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L ER + L F +S+ N+ I +++ E L QAF+EAVHS + Sbjct: 71 ---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQS 126 Query: 131 FQYIITSL 138 + Y++ ++ Sbjct: 127 YSYMLDTI 134 >gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] Length = 347 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 7/128 (5%) Query: 12 AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 AG+ V + +R++ + ++N +KY W + Y A NN W+P E+ + D+ +++ Sbjct: 13 AGDTEVRL--RRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVRDYRT 70 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L ER + L F +S+ N+ I +++ E L QAF+EAVHS + Sbjct: 71 ---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQS 126 Query: 131 FQYIITSL 138 + Y++ ++ Sbjct: 127 YSYMLDTI 134 >gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii] Length = 309 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 17/131 (12%) Query: 43 WEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 W+K++ W E+ + DL W N LT DER K LGFFAS+ +V++N+ Sbjct: 18 WKKHVRC---FWTKDEINITSSDLREW---NDLTPDERQFFKCILGFFASTNIIVSDNLA 71 Query: 102 LAIYRHLSNP----ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PS 154 L R L++P E R + Q E +HS T+ ++T+ +E E + + P Sbjct: 72 L---RFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNELLYSIISWPC 128 Query: 155 ITAKANWALQY 165 + K+ WA+++ Sbjct: 129 LNVKSRWAVKW 139 >gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1] gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1] Length = 579 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 9/113 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W TE+ + D+ W+ ++++ER +++ L FFA ++LV + I + PEC Sbjct: 94 WQQTEIDAESDIPTWEQ---ISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPEC 149 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR--EVPSITAKANW 161 + ++ Q E VH + + +L D+ +L N Y+ E I K +W Sbjct: 150 KDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKDPEFAPIKKKVDW 202 >gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter litoralis HTCC2594] gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis HTCC2594] Length = 356 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W K +T+ ER ++ + FF ++ Sbjct: 12 PFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQK--ITEHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 V + R E + L + E VH + +++ ++G+ E E Sbjct: 70 VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE 118 >gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 14 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 69 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128 Query: 149 YREVPSITAKANWALQY 165 + P I A W Q+ Sbjct: 129 IEKHPIIRKMAQWVQQW 145 >gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp. ATCC 51142] gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 347 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 ++V L +YGWA Y + +W+P + D + + L ER +K L + Sbjct: 31 TNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKLDYVN---LIPGERRALKGILSY 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELF 146 +S+ NI + R+++ PE R L Q +EA+H T+QYI S+ ++ E++ Sbjct: 88 LNFLDSVQVANIP-ELSRYITAPEARMCLAEQTSQEAMHGETYQYITESIIPENEQHEVY 146 Query: 147 NMYREVPSITAKANWALQYTQTLS 170 + +++ + + + Y QTL+ Sbjct: 147 DFWKKDLLLNERCEFIASYYQTLA 170 >gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] Length = 355 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 24 TDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDI---KDYPRLP 80 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER + L F +S+ N+ I +++ E L Q F+EAVHS ++ Y++ Sbjct: 81 AEERRAYDKILSFLIFLDSIQTANLP-HIGEYITANEINLCLSIQTFQEAVHSQSYSYML 139 Query: 136 TSL 138 ++ Sbjct: 140 DTI 142 >gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] Length = 355 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + V ++M+ + ++N +KY W Y A NN W+P E+ + D+ K L Sbjct: 24 IQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEINLGVDI---KDYRNLP 80 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 81 KAEKRAYDKILSFLIFLDSIQTANLP-GISEYITANEVNLCLSIQAFQEAVHSQSYSYML 139 Query: 136 TSL 138 ++ Sbjct: 140 DTI 142 >gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia sennetsu str. Miyayama] gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia sennetsu str. Miyayama] Length = 322 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P E+PM DD+ W K + E+ ++ + FF ++ Sbjct: 12 PFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHK--ICGTEKNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + + PE L A E +H + +++ ++G+ E E F Y+++ Sbjct: 70 VHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETEYLAFTKYKQM 128 >gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FF +S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYT 166 E +HS + ++ + D E LF+ VP + KA WAL++ Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI 103 >gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter concisus 13826] gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter concisus 13826] Length = 340 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV DD+ + LT+ Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTE 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHSKSYAVMVE 131 Query: 137 SL 138 ++ Sbjct: 132 AI 133 >gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 347 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y W + Y A NN W+P E+ + D K L ER Sbjct: 21 RRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDT---KDYPKLDKAERT 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL + N+ ++ +++ E L QAF+E VHS ++ Y++ ++ Sbjct: 78 AYDKILSFLVFLDSLQSTNLP-SLTEYVTANEVNLCLHIQAFQECVHSQSYSYMLDTI 134 >gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 277 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT +E+ IK L FFA+S+ +V N+V + E + + Q E +HS + Sbjct: 11 LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSK 70 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 +I +L D+ E LFN +PSI KA WA ++ + +S Sbjct: 71 LIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTS 111 >gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] Length = 345 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K LT+ E+ + +G A +S + Sbjct: 35 VRFSWAYPKYKRMLGNFWTPFEINMSKDI---KQFPNLTEQEQDTFLKVIGLLALLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + + +L++ ++ A +E VH+H++ Y+++S+ + E+F+ +R P+ Sbjct: 91 QTDYAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSSIVSKNKQDEVFDYWRTEPT 150 Query: 155 ITAKANW 161 + + ++ Sbjct: 151 LRKRNDF 157 >gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] Length = 347 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 5/131 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E +V +RM + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 66 -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123 Query: 128 SHTFQYIITSL 138 S ++ Y++ ++ Sbjct: 124 SQSYSYMLDTI 134 >gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] Length = 359 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+ + ++N ++YGW Y A NN W+P E+ + D K L Sbjct: 28 TDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDR---KDYGELL 84 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ + N+ I +++ E L Q F+E VHS ++ Y++ Sbjct: 85 GKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYML 143 Query: 136 TSL 138 ++ Sbjct: 144 DTI 146 >gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus] Length = 384 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P KY WA + + HW+ TEV ++DD+ WKS LT E+ I L F + Sbjct: 76 PFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQLDVE 134 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + + + E R L A EA+H + + +LG+ + E F Y+E+ Sbjct: 135 VGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEYSAFVAYKEM 193 >gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 352 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N LKY W + Y A NN W+P E+ + D+ K L + E+ R L F Sbjct: 34 TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYRNLDEHEKRAFDRILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ N+ + +++ E L Q ++E++HS ++ YI+ ++ Sbjct: 91 LTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYILDTI 139 >gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] Length = 340 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV DD+ + LT Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTQ 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHSKSYAVMVE 131 Query: 137 SL 138 ++ Sbjct: 132 AI 133 >gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 346 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ +L +KY WA + N W+P EVP+ DD K LT DE+ R L F Sbjct: 30 TNIMELTNVKYEWAQKLSDIMLRNFWIPEEVPLLDDA---KQYLELTADEQWAYDRMLSF 86 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 +S++ ++ I +++ PE L F EA+HS ++ Y++ S+ E ++ Sbjct: 87 VIFMDSILTVSMPNLI-NYVTAPEINMCLSIHNFHEALHSKSYGYVLESVVPAERRQYIY 145 Query: 147 NMYRE 151 +++RE Sbjct: 146 DLWRE 150 >gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus pseudofirmus OF4] gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pseudofirmus OF4] Length = 344 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ Y + N W P E+ M D K LT+ E+ K+ +G A +S V Sbjct: 34 VRFSWAYPLYKNMLANFWTPFEINMSHDT---KQFQNLTETEQEAFKKIIGLLAFLDS-V 89 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + L + +L++ + +F+E VH+ ++ Y+++SL + E+F+ ++ P Sbjct: 90 QTDYSLKVADYLTDSSLVALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFDYWKNDPV 149 Query: 155 ITAKANWALQ-YTQTLSSPS 173 + + + + Y + ++P+ Sbjct: 150 LKERNEFIVDGYEEFANNPT 169 >gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae] Length = 345 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 29 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E +HS + ++ + D Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEVYSMMVDAFFKDPK 143 Query: 144 E--LFNMYREVPSITAKANW 161 LF +P + KA + Sbjct: 144 NIPLFKEIANLPEVKHKAAF 163 >gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] Length = 353 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 9/141 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K L+++E+ + +G A +S + Sbjct: 42 VRFQWAFPKYKRMLANFWTPFEINMSQDI---KQFPDLSEEEKEAFLKIIGLLALLDS-I 97 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVP 153 + + +L++ ++ A +E +H+H++ Y+++S+ +D + E+F +R P Sbjct: 98 QTDYAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSI-VDKNKQDEVFEFWRTEP 156 Query: 154 SITAKANW-ALQYTQTLSSPS 173 ++ + + A Y SP+ Sbjct: 157 ALIKRNEFVASGYRNFAESPT 177 >gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus prevotii DSM 20548] gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM 20548] Length = 352 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +++ +R++ + ++N LKY W + Y A NN W+P E+ + D+ ++ L Sbjct: 21 IDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRK---LD 77 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ R L F +S+ N+ + +++ E L Q ++E++HS ++ YI+ Sbjct: 78 KHEKKAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYIL 136 Query: 136 TSL 138 ++ Sbjct: 137 DTI 139 >gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sediminis HAW-EB3] gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3] Length = 376 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 3/112 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D A W+ LT+ E+ + NL + +S+ A ++ + +S PE Sbjct: 49 WRPEEIDISKDRADWQR---LTESEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 ++ AF E +HS ++ +I+ +L + GE+F+ P+I +A +Y Sbjct: 106 ETWVETWAFSETIHSRSYTHILRNLFTEPGEVFDDIVVNPAILKRATSIAKY 157 >gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] Length = 346 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 + HW+ E + DD+ W++++ +DDER IK L F + +VA+N N Sbjct: 34 DAHWVKQEAELGDDVNDWRNRS--SDDERSFIKEILTVFTQGDVVVADNYKSIFIPAFKN 91 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTL 169 E +L+ A E +H + + GL + +F +RE + + + A QY ++ Sbjct: 92 NEVSNWLVGVAAREVIHQDAYAMANETFGLPD-SMFGRFREYQEMRERNDLMATQYDPSM 150 >gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] Length = 347 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI + N +++ + ++V L +YGWA Y + + W+P + D Sbjct: 9 SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + L ER +K L + +S+ NI + R+++ PE R L Q +EA+ Sbjct: 69 DYAN---LIPGERRALKGILSYLNFLDSVQVANIP-ELSRYITAPEARMCLAEQTSQEAM 124 Query: 127 HSHTFQYIITSLGLDEGELFNMY 149 H T+QYI S+ + E E +Y Sbjct: 125 HGETYQYITESI-IPENEQHEVY 146 >gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter hominis ATCC BAA-381] gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter hominis ATCC BAA-381] Length = 340 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV DD+ + LT E+ M + S +S Sbjct: 35 KYVWALKLWDIMEANTWFPREVDTTDDVRDYNF--NLTPAEKRMYELVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + +++ M Sbjct: 93 NNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICQNTDQIYEM 143 >gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] Length = 340 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D+ + +KN LTD E+ M S +S Sbjct: 35 KYTWALKLWDMMEGNTWFPKEVDTTKDVIDY-NKN-LTDAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ Sbjct: 93 NNLADNINPYITAPEINACLSRQAYEEANHSKSYAVMVEAM 133 >gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Francisella cf. novicida 3523] Length = 410 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 219 MTDKIDFMMDADPT 232 >gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 410 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQ 164 +T K ++ + Sbjct: 219 MTDKIDFMMD 228 >gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 410 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQ 164 +T K ++ + Sbjct: 219 MTDKIDFMMD 228 >gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct] Length = 445 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 128 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 185 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 186 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 244 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 245 MTDKIDFMMDADPT 258 >gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 348 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y WA + Y A NN W+P E+ + D K L ER Sbjct: 22 RRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEINLTQDT---KDYPLLPPAERK 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL + N+ ++ ++ E L QAF+E VHS ++ Y++ ++ Sbjct: 79 AYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHIQAFQECVHSQSYSYMLDTI 135 >gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] Length = 410 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 219 MTDKIDFMMDADPT 232 >gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis SCHU S4] gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis FSC198] gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. mediasiatica FSC147] gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis MA00-2987] gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp. tularensis FSC033] gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis NE061598] Length = 410 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 219 MTDKIDFMMDADPT 232 >gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis WY96-3418] gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 410 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 219 MTDKIDFMMDADPT 232 >gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica LVS] gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica OSU18] gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FSC200] gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica LVS] gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica OSU18] gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 410 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 219 MTDKIDFMMDADPT 232 >gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. novicida U112] gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp. novicida GA99-3549] gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta subunit [Francisella novicida U112] gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549] gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] Length = 410 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 219 MTDKIDFMMDADPT 232 >gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548] gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548] Length = 410 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ W KNG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDW--KNGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQT 168 +T K ++ + T Sbjct: 219 MTDKIDFMMDADPT 232 >gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 346 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + +R++N + ++N LKY W + Y A NN W+P E+ + D+ ++ L Sbjct: 15 IETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDYRE---LD 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +SL I + +++ E L Q ++E++HS ++ YI+ Sbjct: 72 KAEKTAYDKILSFLIYLDSLQTAQIP-KLQSYVTANEINLCLSIQGYQESIHSQSYSYIL 130 Query: 136 TSL 138 ++ Sbjct: 131 DTI 133 >gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 348 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y WA + Y A NN W+P E+ + D K L ER Sbjct: 22 RRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEINLTQDT---KDYPLLPPAERK 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + L F +SL + N+ ++ ++ E L QAF+E VHS ++ Y++ ++ Sbjct: 79 AYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHIQAFQECVHSQSYSYMLDTI 135 >gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus] Length = 181 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 K L FFA S+ +V N+V Y + E R + QA E +H+ + +I +L Sbjct: 2 FFKCILAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLIP 61 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQ 167 +E E +F+ + P IT K WA Q+ + Sbjct: 62 NEDEQRSIFSSFMTTPGITEKTRWAKQWLE 91 >gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] Length = 352 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N LKY W + Y A NN W+P E+ + D+ K L E+ R L F Sbjct: 34 TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYRKLDQHEKRAFDRILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ N+ + +++ E L Q ++E++HS ++ YI+ ++ Sbjct: 91 LTYLDSIQTANLP-NLQTYVTANEINLCLSIQTYQESIHSQSYSYILDTI 139 >gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] Length = 346 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 7/134 (5%) Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++N +S +V + Y WA+ KY N W P E+ M D+ K LT+ E+ Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPNLTEREQDA 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--G 139 + +G A +S + + + ++++ ++ A +E +H+H++ Y+++SL Sbjct: 78 FLKIIGLLALLDS-IQTDYAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVPK 136 Query: 140 LDEGELFNMYREVP 153 + E+F +R P Sbjct: 137 SKQDEVFEFWRNEP 150 >gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii] Length = 87 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W+ Y A + W EV + D+A W+S L DER I L FFA+S+ +V N+V Sbjct: 4 WQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNENLVE 60 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHS 128 + + E R + Q E +HS Sbjct: 61 RFSKEVQVTEARFFYGFQIAIENIHS 86 >gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] Length = 384 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P KY WA + + HW+ TEV ++DD+ WKS L+ E+ I L F + Sbjct: 76 PFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQLDVE 134 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V + + + E R L A EA+H + + +LG+ + E F Y+E+ Sbjct: 135 VGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEYSAFVAYKEM 193 >gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] Length = 345 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++N S +V +++ WA+ Y + N W P E+ M +D+ K + L ER Sbjct: 20 RIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDV---KQYDKLEPKEREA 76 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL- 140 + +G A +S + + + + R+L++ + +F+E VH+ ++ Y+++SL Sbjct: 77 FDKIIGLLAFLDS-IQTDYSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLSSLTTK 135 Query: 141 -DEGELFNMYREVPSITAKANW-ALQYTQTLSSPS 173 + E+F ++ + + ++ A Y +S+P+ Sbjct: 136 AKQDEIFEYWKHDKVLRERNDFIAEGYEAFVSNPT 170 >gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3] gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 048L; AltName: Full=Ribonucleotide reductase small subunit gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent virus] Length = 376 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D P +Y ++K+ + + HW E+ MQDD+ W N L++ E+ + + L F Sbjct: 48 ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDW--HNRLSEAEKTFLVQILRF 105 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 F + VA V + + PE R L EA+H ++ ++I++L L + Sbjct: 106 FTQGDVDVAVGYVQYL-QLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNLPD 158 >gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] Length = 184 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N + D+ER I L FFA+S+ Sbjct: 99 LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRMNDNERHFISHVLAFFAASD 156 Query: 94 SLVANNIVLAIYRHLSNPECR 114 +V N+V + E R Sbjct: 157 GIVNENLVERFSNEVQAAEAR 177 >gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. fetus 82-40] gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter fetus subsp. fetus 82-40] Length = 340 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV DD+ + LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTDDVRDYAC--NLTTAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ Sbjct: 93 NNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAI 133 >gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] Length = 346 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 13/148 (8%) Query: 15 KRVNVDDK------RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 KRV +D + R++N +S +V + Y WA+ KY N W P E+ M D+ Sbjct: 7 KRVIMDPEAPNRSTRIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV-- 64 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K LT+ E+ + +G A +S + + + ++++ ++ A +E +H Sbjct: 65 -KQFPLLTEREQDAFLKIIGLLALLDS-IQTDYAGRVADYITDSSINALMIMLAQQEVIH 122 Query: 128 SHTFQYIITSLGL--DEGELFNMYREVP 153 +H++ Y+++SL + E+F +R P Sbjct: 123 NHSYSYVLSSLVTKSKQDEVFEFWRNEP 150 >gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] Length = 340 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV DD+ + LT E+ M S +S Sbjct: 35 KYQWALKLWDLMEANTWFPKEVDTTDDVRDYNF--NLTSAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAI 133 >gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 352 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N LKY W + Y A NN W+P E+ + D+ ++ L E+ R L F Sbjct: 34 TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRK---LDQYEKKAYDRILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ N+ + +++ E L Q ++E++HS ++ YI+ ++ Sbjct: 91 LTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYILDTI 139 >gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] Length = 340 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV D+ + LT Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGDVRDYAY--SLTQ 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHSKSYAVMVE 131 Query: 137 SL 138 ++ Sbjct: 132 AI 133 >gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus 1] Length = 378 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 9/130 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA E N HW E+ + DD++ WK+ LT E+ I + L F + Sbjct: 74 PFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQLDVS 132 Query: 96 VA---NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYR 150 V +NI + I++ N E R L A E H + + +LGL E E F Y+ Sbjct: 133 VGHIYHNIFIPIFK---NNELRNMLCSFACREGTHQQAYALLNDTLGLPETEYSTFLNYK 189 Query: 151 EVPSITAKAN 160 E+ + T N Sbjct: 190 EMTNKTIYMN 199 >gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c] gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2; AltName: Full=Ribonucleotide reductase R2 subunit 2; AltName: Full=Ribonucleotide reductase small subunit 2 gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae] gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae] gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c] gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB] gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO] Length = 345 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 29 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E ++S + ++ + D Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 143 Query: 144 E--LFNMYREVPSITAKANW 161 LF +P + KA + Sbjct: 144 NIPLFKEIANLPEVKHKAAF 163 >gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168] Length = 346 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N +KY W + Y A NN W+P E+ + D K L + ER + L F Sbjct: 28 TNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDT---KDYPHLDEAERTAYDKILSF 84 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ N+ + +++ E L Q F+E VHS ++ Y++ ++ Sbjct: 85 LIFLDSIQTANLP-NVGEYITANEVNLCLSIQTFQECVHSQSYSYMLDTI 133 >gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus flavithermus WK1] gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus WK1] Length = 345 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY ++ Y N W P E+ M DD+ W + L++ ER +G + +S V Sbjct: 34 IKYSHFYDIYKMLLGNFWTPFEINMSDDIKQW---HALSERERDAFLHIIGLLSILDS-V 89 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPS 154 N + A+ ++++P + +E VH+ ++ Y++ S+ ++ F M R P Sbjct: 90 QPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYSYVLASIEKLSEQHRAFEMARTNPH 149 Query: 155 I 155 I Sbjct: 150 I 150 >gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium QM B1551] gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium DSM 319] gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium QM B1551] gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium DSM 319] Length = 347 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K LT DE+ + +G A +S + Sbjct: 35 VRFSWAFPKYKRMLANFWTPFEINMGQDI---KQFPQLTADEQESFLKIIGLLALLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++ + ++++ ++ A +E VH+H++ Y+++SL Sbjct: 91 QSDYASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSL 132 >gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] Length = 342 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 NQ +Y + Y W E+ + +D+ W + DE+ I L FFAS Sbjct: 33 NQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECWDKS---SSDEQHFIIHILAFFAS 89 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNM 148 + +V N+ + + P+ R + Q E++H + +I + + ++ Sbjct: 90 LDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILIQTYVKNSQQQSKILRS 149 Query: 149 YREVPSITAKANWA 162 +E+P I KA W Sbjct: 150 VQEMPIIRKKAQWV 163 >gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 317 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL WK L+ E+ ++K+ +G A ++L + Sbjct: 18 FVWDK---ATAQFWLDTRVPVSNDLLEWKK---LSTMEKEIVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAK 158 + A+ +H + R L F E++H+ T+ I+ SL D E+++ P + K Sbjct: 72 LYALKKHARTQKERAVLSNFMFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPMMQFK 131 Query: 159 A 159 A Sbjct: 132 A 132 >gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 322 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P ++P+ +DLA W + LTD ER M R ++ A +A+ Sbjct: 31 GNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVAMIADAVT 87 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 88 PHEEAVLTNMAFMESVHAKSYSSIFSTL 115 >gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A] gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A] Length = 354 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 12/114 (10%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P ++ + D+ + + LT+DER L + Sbjct: 36 TNLMQLNDVRYSWAVGLYQQMRENFWIPQKLDITQDVTDY---SNLTEDERYAYDGILSY 92 Query: 89 FASSESLVANNIVLAIYRHLSN----PECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ NI HL N PE + Q +E +H+ ++QYII ++ Sbjct: 93 LTFLDSIQTCNI-----PHLKNSITAPEVSLCMAEQISQEGMHNQSYQYIIETI 141 >gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 347 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +++ + ++N + ++N +KY W + Y A NN W+P E+ + D+ +K L Sbjct: 16 IDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDYKI---LD 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + E+ + L F +S+ + + +++ E L Q+F+E++HS ++ YI+ Sbjct: 73 EAEKRAFDKILSFLIYLDSIQTAQLP-NLQAYITANEINLCLSIQSFQESIHSQSYSYIL 131 Query: 136 TSL 138 ++ Sbjct: 132 DTI 134 >gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein [European catfish virus] gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein [European sheatfish virus] Length = 202 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HWM TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANW 161 T K ++ Sbjct: 150 TDKLDF 155 >gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus equi 103S] gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus equi 103S] Length = 322 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P ++P+ +DLA W + LTD ER M R ++ A +A+ Sbjct: 31 GNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVAMIADAVT 87 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 88 PHEEAVLTNMAFMESVHAKSYSSIFSTL 115 >gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] Length = 345 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K L E+ + +G A +S + Sbjct: 35 VRFSWAYPKYKKMLANFWTPFEINMSQDI---KQFPELRKSEQEAFLKIIGLLALLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + + ++++ ++ A +E +H+H++ Y+++SL + E+F +R P Sbjct: 91 QTDYAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQKQDEVFEFWRTEPI 150 Query: 155 ITAKANWALQ-YTQTLSSPS 173 + + + + Y +PS Sbjct: 151 LAERNEFVVNGYKDFAENPS 170 >gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] Length = 340 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S + Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQS 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] Length = 323 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W LTD+ERL+ R +++ +++ Sbjct: 31 VNNFWLPEKVPLSNDVQSWSH---LTDEERLLSMRVFTGLTLLDTIQGTVGAVSLIPDAM 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQ 164 P L AF E+VH+ ++ I ++L +DE F RE ++ AKA ++ Sbjct: 88 TPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEA--FRWSRENRNLQAKAGLIVE 144 >gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] Length = 323 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 9/114 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LTD+ERL+ R +++ +++ Sbjct: 31 VNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGLTLLDTIQGTVGAVSLIPDAM 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKA 159 P L AF E+VH+ ++ I ++L +DE F RE ++ AKA Sbjct: 88 TPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEA--FRWSRENRNLQAKA 139 >gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] Length = 359 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 7 LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI E +V+++ + +++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 18 INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT DER L + +S+ NI + ++ PE + Q +EA Sbjct: 78 VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNIP-HLKSSITAPEISLCMAEQVSQEA 133 Query: 126 VHSHTFQYIITSL 138 +H+ ++QY+I ++ Sbjct: 134 MHNQSYQYMIETI 146 >gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] Length = 340 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 305] Length = 305 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81116] gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81-176] gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81116] gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni IA3902] gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni M1] gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 327] Length = 340 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] Length = 355 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P + + D+ + + LTDDER L + Sbjct: 37 TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDYAN---LTDDERYAYDGILSY 93 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ NI + ++ PE + Q +E +H+ ++QYII ++ Sbjct: 94 LTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEGMHNQSYQYIIETI 142 >gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] Length = 322 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 14/163 (8%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+LL K WE+ N W+P ++P+ +DLA W++ + + + L + Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + P + KA + Y + + KR+ S ++ S F Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDAL------KRKASSVMLESFLF 165 >gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small subunit; AltName: Full=Ribonucleotide reductase small subunit 1 gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit [Mycobacterium tuberculosis CDC1551] gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1 [Mycobacterium tuberculosis H37Ra] gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1 [Mycobacterium tuberculosis F11] gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CDC1551A] gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis W-148] gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 14/163 (8%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+LL K WE+ N W+P ++P+ +DLA W++ + + + L + Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + P + KA + Y + + KR+ S ++ S F Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDAL------KRKASSVMLESFLF 165 >gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] Length = 344 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P + + D+ + + LTDDER L + Sbjct: 26 TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDYAN---LTDDERYAYDGILSY 82 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ NI + ++ PE + Q +E +H+ ++QYII ++ Sbjct: 83 LTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEGMHNQSYQYIIETI 131 >gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. doylei 269.97] gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 340 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] Length = 82 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + DL W++ LT +E+ IK L FFA+S+ +V N+ + PE Sbjct: 9 WTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFSCEVQIPEA 65 Query: 114 RQYLLRQAFEEAVHSHT 130 R + Q E +HS T Sbjct: 66 RAFYGFQTGMETIHSET 82 >gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] Length = 374 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA E N HW E+ + DD+ WK L D E+ I + L F + Sbjct: 73 PFHYPWAVELRSLHENMHWTEKEISLADDVTDWKI-GKLLDVEKKFITQILRLFTQLDVS 131 Query: 96 VA---NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +N + I++ N E R L A E H + + +LGL E + ++ + + Sbjct: 132 VGQLYHNTFIPIFK---NNEIRNMLCSFACREGTHQQAYALLNDTLGLPESD-YSAFLKY 187 Query: 153 PSITAKANWALQY-TQTLSSPSF 174 +T K ++ T T+ + +F Sbjct: 188 KQMTDKTDFMSDMRTDTIGNVAF 210 >gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789] gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291] gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118] gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796] gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23] Length = 345 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 7/140 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 29 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E ++S + ++ + D Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 143 Query: 144 E--LFNMYREVPSITAKANW 161 LF +P + K + Sbjct: 144 NIPLFKEIANLPEVKHKTAF 163 >gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 340 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] Length = 425 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL WK+ LT DE+LM R ++L +++ Sbjct: 133 TGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 189 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 190 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 218 >gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138] gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata] Length = 335 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y W ++ + D+ W++ L+ ++ L + ++ Sbjct: 20 MFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LSAGQKEFFGNYLAICSRTD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYRE 151 ++V NIV L NPE + + Q E ++ + ++ +L +D LF + Sbjct: 77 NIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDALFTSVDNIPLFKAVCQ 136 Query: 152 VPSITAKANWA 162 + AK+ WA Sbjct: 137 QEEVKAKSEWA 147 >gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni RM1221] gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni RM1221] gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Campylobacter jejuni subsp. jejuni S3] Length = 340 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] Length = 352 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P + + D+ + + LTDDER L + Sbjct: 34 TNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQDVTDYAN---LTDDERYAYDGILSY 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ NI + ++ PE + Q +E +H+ ++QY+I ++ Sbjct: 91 LTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEGMHNQSYQYLIETI 139 >gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] Length = 340 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 3/144 (2%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++D+++ N + KY WA + + N W P EV D ++ LT Sbjct: 15 LNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVA 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ + Sbjct: 73 EKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEA 132 Query: 138 LGLDEGELFNMYREVPSITAKANW 161 + + ++ M + ++ K ++ Sbjct: 133 ICENTDLIYEMEKHDETLREKNDF 156 >gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13] Length = 328 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 7/140 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 12 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E ++S + ++ + D Sbjct: 67 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 126 Query: 144 E--LFNMYREVPSITAKANW 161 LF +P + K + Sbjct: 127 NIPLFKEIANLPEVKHKTAF 146 >gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] Length = 340 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTRDALDYRC--NLTAAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDATLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] Length = 386 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ L+D+++ + NL + +S+ +A + S PE Sbjct: 57 WRPEEVSLQKDRSDYQT---LSDEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 113 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + F E VHS ++ YII ++ D E+F+ + + ++A+ Sbjct: 114 EACMTVWEFMEMVHSRSYTYIIKNVYSDPSEVFDTILDDEKVMSRAS 160 >gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] Length = 316 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 14/115 (12%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 + A+ ++ + R L F E++H+ T+ I+ SL N ++++ I Sbjct: 72 LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEI 118 >gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 316 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 14/115 (12%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 + A+ ++ + R L F E++H+ T+ I+ SL N ++++ I Sbjct: 72 LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEI 118 >gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] Length = 316 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 14/115 (12%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 + A+ ++ + R L F E++H+ T+ I+ SL N ++++ I Sbjct: 72 LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEI 118 >gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] Length = 340 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTRDALDYRCH--LTAAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVETICDNTDLIYEMEKHDATLRE 152 Query: 158 KANW 161 K ++ Sbjct: 153 KNDF 156 >gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium tuberculosis str. Erdman] Length = 321 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+LL K WE+ N W+P ++P+ +DLA W++ + + + L + Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + P + KA + Y + + + +RS ++ S F Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDA-------QAQRSSVMLESFLF 164 >gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] Length = 320 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL WK+ LT DE+LM R ++L +++ Sbjct: 28 TGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 85 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 113 >gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] Length = 345 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ Y + N W P E+ M D + + LT+ E+ K+ +G A +S V Sbjct: 35 VRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQEAFKKIIGLLAFLDS-V 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + +L++ + +F+E VH+ ++ Y+++SL Sbjct: 91 QTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSL 132 >gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] Length = 394 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +K+ LT +++ + NL + +S+ +A + S PE Sbjct: 65 WRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 121 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + E +HS ++ YII ++ D E+F+ + P I ++A Sbjct: 122 ESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDPKIMSRA 167 >gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 352 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 7 LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI E ++++ + +++ QL ++Y WA Y N W+P + + D+ Sbjct: 11 INPIFNPEGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDV 70 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 71 TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEG 126 Query: 126 VHSHTFQYIITSL 138 +H+ ++QY+I ++ Sbjct: 127 MHNQSYQYLIETI 139 >gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 311 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ LTDDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWNPADIDFSRDRADWER---LTDDERSYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H F+ + ++G+ + +L + +V Sbjct: 70 SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTD-DLHHFLDDV 128 Query: 153 PS 154 PS Sbjct: 129 PS 130 >gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein [Short-finned eel ranavirus] Length = 202 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANW 161 T K ++ Sbjct: 150 TDKLDF 155 >gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein [Epizootic haematopoietic necrosis virus] Length = 202 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANW 161 T K ++ Sbjct: 150 TDKLDF 155 >gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium avium 104] Length = 311 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ LTDDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWNPADIDFSRDRADWER---LTDDERSYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H F+ + ++G+ + +L + +V Sbjct: 70 SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTD-DLHHFLDDV 128 Query: 153 PS 154 PS Sbjct: 129 PS 130 >gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein [Ranavirus maxima/9995205/DNK] Length = 202 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANW 161 T K ++ Sbjct: 150 TDKLDF 155 >gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod iridovirus/15/04.11.92/DNK] gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein [Pike-perch iridovirus] Length = 202 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANW 161 T K ++ Sbjct: 150 TDKLDF 155 >gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] Length = 388 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 14/126 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D A + LTD ++ + NL + +S+ +A + S PE Sbjct: 58 WRPEEVSLQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQGRAPGMAFIPYCSLPEL 114 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162 + F E +HS ++ YII ++ D ELF+ +I ++A N+A Sbjct: 115 EGCMQVWQFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNILSRAESVTKSYDDFINYA 174 Query: 163 LQYTQT 168 +Y Q+ Sbjct: 175 HEYDQS 180 >gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein [Bohle iridovirus] Length = 202 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 149 Query: 156 TAKANW 161 T K ++ Sbjct: 150 TDKLDF 155 >gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] Length = 348 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y ++ Y + N W E+ MQDD+ W S + + D L I L AS +SL Sbjct: 38 IAYPQMYDLYQALLANFWKAQEINMQDDIKQWDSLSSVEKDVFLRINTQL---ASLDSLQ 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + A+ ++++ + + +EAVH+ ++ YI++SL ++ E FN + P Sbjct: 95 TPTMSQAM-DYVTDSSFKAIFAVISQQEAVHTESYSYILSSLVSVSEQNERFNQAKSDPV 153 Query: 155 ITAK 158 + + Sbjct: 154 VQKR 157 >gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] Length = 351 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY ++ Y W E+ D+ W + + +T DE+ R L FAS++ Sbjct: 38 LFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNW-NDDKITKDEKEYFIRLLALFASND 96 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 + N+ + PE + + Q + +H + +I SL D+ + +M+ E+ Sbjct: 97 -MDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVKDDEKRTSMFEEIK 155 Query: 154 SIT 156 +T Sbjct: 156 DLT 158 >gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] Length = 388 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ L+ +++ + NL + +S+ +A + S PE Sbjct: 59 WRPEEVSLQKDRSDYQT---LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + F E +HS ++ YII ++ D GE+F+ + ++ +A+ Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYPDPGEVFDTILDDENVMERAS 162 >gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 316 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 14/115 (12%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL WK L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 + AI ++ + F E++H+ T+ I+ SL N ++++ +I Sbjct: 72 LYAIKKNARTQKELAVFSDFNFMESIHAKTYGTILISL--------NTFKDIEAI 118 >gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 355 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 6/124 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y W+ Y N W+P + + D+ + LTD+ER L + Sbjct: 37 TNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDVTEY---GHLTDEERYAYDGILSY 93 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ NI + ++ PE + Q +EA+H+ ++QY+I ++ + GE++ Sbjct: 94 LTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQSYQYLIETIIPSDRRGEVY 152 Query: 147 NMYR 150 + +R Sbjct: 153 DFWR 156 >gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 324 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LTD+E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSNIFSTL-CSTAEIDDAFRWSEENPNLQRKAAIVMQY 146 >gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] Length = 319 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN- 110 +HW+P EV D W+ L+ +E+ K L FFA + LV N+V + +S+ Sbjct: 27 SHWIPEEVDTSKDAQDWQL---LSKEEKSFAKLILAFFAQFDGLVVENLVRHFQQEVSSF 83 Query: 111 -PECRQYLLRQAFEEAVHSHTFQYIITSL 138 E + + QA E +H+ T+ +I L Sbjct: 84 AKEIEWFYILQAANELIHNETYMNLINVL 112 >gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus granularis] Length = 141 Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144 L FFA+S+ +V N+V + + E R + Q E +HS + +I + D + Sbjct: 3 LAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAVQR 62 Query: 145 --LFNMYREVPSITAKANWALQYTQTLSS 171 LFN +P +T KA WAL + + S+ Sbjct: 63 DYLFNAVETMPCVTKKAQWALDWISSDSA 91 >gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511] gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100] gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511] Length = 343 Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y + Y N+W+P EV M+ D K N L+++E+ +G A+ +S Sbjct: 33 IRYPSFYRAYKELTTNYWLPDEVDMKSDA---KQYNHLSEEEKYAFDSIIGLLATLDS-P 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++S+ A +EA+H+ ++ Y++ S+ ++ +F R P+ Sbjct: 89 QTRFIYNIAEYVSDASVHAITAIIAQQEAIHNESYSYVLASITNLQEQNRVFEEARTHPT 148 Query: 155 ITAK 158 I + Sbjct: 149 IIKR 152 >gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter arilaitensis Re117] gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter arilaitensis Re117] Length = 324 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT+DE+L+ R ++L +++ Sbjct: 32 VNNFWLPEKVPLSNDIQSWGT---LTEDEKLLTMRVFTGLTLLDTLQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 P AF E+VH+ ++ I ++L Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLA 118 >gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] Length = 388 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ LT +++ + NL + +S+ +A + S PE Sbjct: 59 WRPEEVSLQKDRSDYQT---LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + F E +HS ++ YII ++ D E+F+ + ++ ++A+ Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTILDDENVMSRAS 162 >gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein [Rana esculenta virus] Length = 202 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANW 161 T K ++ Sbjct: 150 TDKLDF 155 >gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus] Length = 387 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 192 Query: 156 TAKANW 161 T K ++ Sbjct: 193 TDKLDF 198 >gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein [Pelagibaca bermudensis HTCC2601] gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein [Roseovarius sp. HTCC2601] Length = 326 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT++ER + R +++ + A+ P Sbjct: 36 NFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTGLTLLDTIQNSVGAPAMMPDCLTP 92 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L + E F E P + AKA L+ Sbjct: 93 HEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFRWSDENPHLQAKARAVLETYAPE 152 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 + P KR+ + + S F Sbjct: 153 ADPL-----KRKIASVFLESFLF 170 >gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] Length = 355 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 9/149 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87 +++ QL ++Y WA Y N W+P + + D+ W LTD+ER L Sbjct: 37 TNLMQLNDVRYNWAVGLYKQMRENFWIPERLDITQDVTDYW----NLTDEERYAFDGILS 92 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII-TSLGLDE-GEL 145 + +S+ NI + ++ PE + Q +E +H+ +QY+I T + L++ ++ Sbjct: 93 YLTFLDSIQTCNIP-HLKSSVTAPEISLCMAEQISQEGMHNQAYQYMIETIIPLEKRNQV 151 Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPS 173 ++ +R + A+ + A Y + + +PS Sbjct: 152 YDFWRTDKVLKARCEFIAGLYQKYIDTPS 180 >gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] Length = 322 Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTDDER KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYAFMAMMEQIHAKSYSHIFTTL 106 >gi|308067265|ref|YP_003868870.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 343 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 6/106 (5%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+P E+PM D + + L +E+ K N+G A +S+ V + R+ ++ Sbjct: 47 NHWIPDEIPMSKDASQFPV---LDAEEQRTFKINIGLLAVLDSM-QTMFVGDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSI 155 +E VH+ ++ Y+++SL D + E+F ++ P + Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSLVSDQEQKEIFEYWKNDPVL 148 >gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] Length = 338 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ LT+ E+ M R +++ +++ S Sbjct: 46 TTNFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGLTLLDTIQGTVGAVSMIPDAS 102 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L +DE F E P + KA L Y Sbjct: 103 TPHEEAVLTNIAFMESVHAKSYSTIFSTLCSTPQIDEA--FRWAEENPYLQRKAKIILGY 160 >gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] Length = 321 Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y WA Y N W+P + + D+ + LTDDER L + +S+ Sbjct: 11 VRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDSVQ 67 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 NI + ++ PE + Q +E +H+ ++QY+I ++ Sbjct: 68 TCNIP-HLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETI 108 >gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sibiricum 255-15] gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum 255-15] Length = 347 Score = 42.0 bits (97), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y +N W+P E+ M D+ W N L++ E+ KR +G + +S V Sbjct: 35 IAYPQFYSIYKQLLSNFWIPDEISMSKDMQQW---NQLSEREQDAFKRIIGLLSILDS-V 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +L S+ L A +E VH+ ++ Y+++SL Sbjct: 91 QTRYILESAMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSL 132 >gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] Length = 387 Score = 42.0 bits (97), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 192 Query: 156 TAKANW 161 T K ++ Sbjct: 193 TDKLDF 198 >gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] Length = 322 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTDDER KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL 106 >gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum WCFS1] gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus plantarum WCFS1] gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] Length = 336 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 8/122 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+A W+ L DD R ++ G ++L + + + Sbjct: 33 TWEK---LTEQFWLDTRIPVSNDMADWRE---LDDDHRWVVGHVFGGLTLLDTLQSQDGL 86 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DE-GELFNMYREVPSITAKA 159 A+ R++ L F E+VH+ ++ I +L DE E+F+ + AKA Sbjct: 87 QALRRNVLTSHETAVLNNIQFMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKA 146 Query: 160 NW 161 W Sbjct: 147 QW 148 >gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506] gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] Length = 387 Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 192 Query: 156 TAKANW 161 T K ++ Sbjct: 193 TDKLDF 198 >gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] Length = 352 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P ++ + D+ + + LTD ER L + Sbjct: 34 TNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVTDY---HNLTDSERRAFDGILSY 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S+ N+ I ++ PE + Q +E +H+ ++QY+I ++ Sbjct: 91 LTFLDSVQTCNLP-HIKSSITAPEISLCIAEQISQEGMHNQSYQYMIETI 139 >gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 320 Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 10/137 (7%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 13 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTANEKQLTMRVFTGLTM 66 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P L AF E+VH+ ++ I ++L E+ + +R Sbjct: 67 LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 125 Query: 151 --EVPSITAKANWALQY 165 E P++ KA LQY Sbjct: 126 SEENPNLQRKAEIVLQY 142 >gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog virus] Length = 387 Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 V + + + E R L A EA+H + + +LG+ + E Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE 182 >gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 323 Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 15/119 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D+ WK LT+DE+++ R L + ++ V +++ R Sbjct: 32 NFWLPEKIPLSNDIQSWKQ---LTEDEQVLTTRVFTGLTLLDTIQNTVGAPVLMKDAR-- 86 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWAL 163 P L AF EAVH+ ++ I ++L +DE F E P + KA L Sbjct: 87 -TPHEEAVLSNIAFMEAVHARSYSSIFSTLCTTPQIDEA--FRWAEENPLLQQKAKIIL 142 >gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus] gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus] Length = 387 Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 192 Query: 156 TAKANW 161 T K ++ Sbjct: 193 TDKLDF 198 >gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] Length = 355 Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87 +++ QL ++Y WA Y N W+P + + D+ W LT+DER + L Sbjct: 37 TNLMQLNDVRYTWAVGLYKQMRENFWIPERLDITQDVTDYW----NLTEDERYAFEGILS 92 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GEL 145 + +S+ NI + ++ PE + Q +E +H+ +QY+I ++ E E+ Sbjct: 93 YLTFLDSVQTCNIP-HLKASVTAPEISLCMAEQISQEGMHNQAYQYMIETIIPLERRSEV 151 Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 ++ +R + A+ + A Y + ++ P+ + + L L F Sbjct: 152 YDFWRTDKVLKARCEFIAGLYQKYINQPNIDNYFTALMADYLLEGLYF 199 >gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] Length = 210 Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] Length = 347 Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y ++ Y + N W E+ MQDD+ W D L I L S ++ Sbjct: 37 IAYPHMYDLYQTLLANFWKAQEINMQDDIKQWAELTPAEQDVFLRINTQLASLDSLQTPT 96 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + ++ ++++P + A +EAVH+ ++ Y+++SL Sbjct: 97 MSQVM----DYVTDPSFKAIFAIVAQQEAVHNESYSYVLSSL 134 >gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] Length = 337 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 W+P EVP+ D+ W LT+ ER++ KR L ++ N+ + ++ Sbjct: 41 VKQFWLPEEVPISKDIPSWAE---LTESERILYKRVLAGLTLLDTKQGNDGIPSMMDLTE 97 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYT 166 N + + L E +H+ ++ I T+L L + E+ +++ E P + KA L+ Sbjct: 98 NFQRKAVLSFMGTMEEIHAKSYSSIFTTL-LSKHEIDDLFLWIEEEPLLQNKAKIVLRQY 156 Query: 167 QTLSSPSFHY 176 + + P Y Sbjct: 157 KNVEDPKSLY 166 >gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 318 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 6/98 (6%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A + W+ T VP+ +DLA W+ L+ E+ +IK+ +G A ++L + Sbjct: 20 YVWDK---ATSQFWLDTRVPISNDLADWRE---LSSVEQEVIKKVVGGLALLDTLQSEKG 73 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 V A+ + + L F E++H+ ++ I+TSL Sbjct: 74 VNAMREDVRTHKEAAILNNFLFMESIHAKSYGTILTSL 111 >gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] Length = 329 Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL WK+ LT E+LM R ++L +++ Sbjct: 37 TGNFWLPEKVPLSNDLPSWKT---LTKGEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 94 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 122 >gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 320 Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W++ LT+ ER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFSRDRADWEA---LTEREREYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ + +L ++ EV Sbjct: 70 AVTKDIQPFMSAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGVTD-DLHSLIEEV 128 Query: 153 PS 154 P+ Sbjct: 129 PA 130 >gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1] Length = 312 Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 6/103 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S LTD ER R F + E V +I +A R Sbjct: 32 WDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 YL + AFEEA H+ F+ + ++G+ E +L E+P+ Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGITE-DLQGYLDELPA 130 >gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 134 Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] Length = 323 Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 130 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 28 LPLKL------FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 78 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 79 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 128 >gi|114560571|ref|XP_513941.2| PREDICTED: hypothetical protein [Pan troglodytes] Length = 403 Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E I R L FFA+S+ +V N+V + + E R + Q E HS + +I Sbjct: 106 EESDFISRVLAFFAASDGIVNENLVERFSQEVQITEARCFYDFQIAMENTHSEMYSLLID 165 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWAL 163 + D E LFN E P + KANWAL Sbjct: 166 TYIKDSKEREFLFNTI-ETPCV-KKANWAL 193 >gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] Length = 155 Score = 41.2 bits (95), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N + D+ER I L FFA+S+ Sbjct: 85 LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDW--NNRMNDNERHFISHVLAFFAASD 142 Query: 94 SLVAN 98 + N Sbjct: 143 GIHEN 147 >gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium tuberculosis H37Rv] gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB [Mycobacterium tuberculosis H37Ra] gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] Length = 314 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 122 Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-064] Length = 229 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 111 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 311 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] Length = 324 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L DER + R L +++ ++ P Sbjct: 34 NFWLPEKVPLSNDVQSWAT---LKPDERTLTIRVLTGLTLLDTIQNTVGAPSLMPDAQTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L + + F + P + AK+ LQ Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTKEVDDAFRWSEDNPHLQAKSRLILQEYNAT 150 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 + P KR+ + + S F Sbjct: 151 ADPL-----KRKIASVFLESFLF 168 >gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] Length = 321 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 343 Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 6/106 (5%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+P E+PM D + + L +E+ K N+G A +S+ V + R+ ++ Sbjct: 47 NHWIPDEIPMSKDASQFPM---LDAEEQRTFKINIGLLAVLDSM-QTMFVGDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSI 155 +E VH+ ++ Y+++SL ++ E+F ++ P + Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSLVSEQEQKEIFEYWKNDPVL 148 >gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sp. AT1b] gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b] Length = 346 Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust. Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y +N W+P E+ M D+ W LT+ E+ KR +G + +S V Sbjct: 34 IAYPQFYTIYKQLLSNFWIPDEISMSKDMQQWPQ---LTEREQDAFKRIIGLLSILDS-V 89 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 +L S+ L A +E VH+ ++ Y+++SL ++ +FN+ ++ Sbjct: 90 QTRYILESSMFSSDSSVHAVLAVIAQQEVVHNQSYSYVLSSLVPLAEQNRIFNIAKDDEM 149 Query: 155 ITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + + + L Y +P+ + K + ++ + F Sbjct: 150 VMKRNQFILDLYEAFRETPNAENFAKSLVASVILEGINF 188 >gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] Length = 314 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] Length = 324 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LTDDE+L+ R +++ +++ P Sbjct: 34 NFWLPEKVPLSNDVQSWAT---LTDDEKLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL 138 AF E+VH+ ++ I ++L Sbjct: 91 HEEAVYTNIAFMESVHAKSYSSIFSTL 117 >gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Mycobacterium tuberculosis CDC1551] gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium bovis AF2122/97] gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB [Mycobacterium tuberculosis F11] gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CDC1551A] gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis W-148] gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 4207] Length = 314 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] Length = 324 Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+++ K W++ N W+P ++P+ +D+ W N L E+LM R Sbjct: 17 NKIIDEKDQEVWDRL---TGNFWLPEKIPLSNDIQSW---NTLKPHEQLMTTRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 71 LDTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFRWS 130 Query: 150 REVPSITAKANWALQY 165 E P + KA L Y Sbjct: 131 EENPYLQKKAQIVLDY 146 >gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] Length = 318 Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W L+D +R + + LG +++ + I H+ + Sbjct: 28 WTDEEIPLSDDKMSWIE---LSDAQRELYMKVLGGLTLLDTIQGGVGIPKIVEHVDGLQR 84 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E +H+ ++ I T+L E +F + P + KA W Y +++ Sbjct: 85 KAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWISVYYNNITT 144 Query: 172 PSFHY 176 P Y Sbjct: 145 PKSLY 149 >gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] Length = 388 Score = 40.8 bits (94), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ L++ ++ + NL + +S+ +A + S PE Sbjct: 59 WRPEEVSLQKDRSDYQT---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + F E +HS ++ YII ++ + G++F+ + ++ ++A+ Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYSNPGDVFDTILDDENVMSRAS 162 >gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] Length = 314 Score = 40.8 bits (94), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] Length = 317 Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I ++ R YL + AFEEA H+ F+ + ++G+ E Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE 119 >gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] Length = 322 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ WK+ N DE+LM R +++ +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSWKTLNA---DEKLMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 87 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 115 >gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium linens BL2] Length = 326 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT++E+ + R +++ +++ Sbjct: 34 TGNFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAV 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P + AF E+VH+ ++ I ++L +DE F RE + +KA+ L Y Sbjct: 91 TPHEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEA--FRWSRENTYLQSKADIILSY 148 >gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] Length = 378 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + NGL D E+ + NL + +S+ + +A+ +S PE Sbjct: 51 WRPEEVDVSRDRIDY---NGLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y TL + Sbjct: 108 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMT 167 Query: 174 FHY 176 +Y Sbjct: 168 NYY 170 >gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-003] Length = 336 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL J1-023] Length = 349 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua Clip11262] gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262] Length = 349 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes str. 4b F2365] gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes Clip81459] gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J1-175] gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL S4-378] gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 1816] gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 220] Length = 349 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P + D A W++ L+D ER+ + R F + E V +I +A R Sbjct: 32 WDPANIDFSRDSADWEA---LSDRERVYVTRLCAGFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 YL + AFEEA H+ F+ + ++G+ + +L + + P+ Sbjct: 89 GDEMYLTQFAFEEAKHTQAFRLWLDAVGVRD-DLHSFLDQTPA 130 >gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 326 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P ++P+ +D+ W + LT +E+L+ R +++ +++ Sbjct: 32 VNNFWLPEKIPLSNDVQSWAT---LTPEEQLLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L +DE F E + KA + Y Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEA--FRWSEENVHLQKKAQIVMDY 146 Query: 166 TQ 167 Q Sbjct: 147 YQ 148 >gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes EGD-e] gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes Finland 1988] gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL R2-561] gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 10403S] gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes LO28] gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e] gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria welshimeri serovar 6b str. SLCC5334] gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes L99] Length = 349 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes J0161] gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] Length = 349 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D + + L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPT---LSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-66c26] gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CIP 107932] gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-76w55] gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-97b34] gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-37x79] gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile CD196] gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile R20291] gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CD196] gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile R20291] Length = 323 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ N + Sbjct: 34 WLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170 + L E +H+ ++ I +L L+ ELF P++ KA+ L QY T + Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLVLAQYENTTN 150 Query: 171 SPSFH 175 + Sbjct: 151 QEGLY 155 >gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] Length = 349 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti] gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti] Length = 244 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 58 EVPMQDDLALW-KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DLA W K K+G E+ I L FF +S+ + N+V + L E R + Sbjct: 142 EVDLSKDLADWEKLKSG----EKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCF 197 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 Q E VHS + +I + D + LFN +P + KA Sbjct: 198 YGFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKA 243 >gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile 630] gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-63q42] gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile ATCC 43255] gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Clostridium difficile] Length = 323 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ N + Sbjct: 34 WLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170 + L E +H+ ++ I +L L+ ELF P++ KA+ L QY T + Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLVLAQYENTTN 150 Query: 171 SPSFH 175 + Sbjct: 151 QEGLY 155 >gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] Length = 395 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +K+ LT +++ + NL + +S+ +A + S PE Sbjct: 66 WRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + E +HS ++ YII ++ D E+F+ + I ++A Sbjct: 123 ESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDDKIMSRA 168 >gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] Length = 349 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D + L+++ER +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKGDAKQYPE---LSEEERYAYDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + + ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQNQNRIFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 323 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ WK LT++E+ + R +++ A+ P Sbjct: 32 NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMEDARTP 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWAL 163 L AF EAVH+ ++ + ++L +DE F +E P + KA L Sbjct: 89 HEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEA--FRWAQENPLLQKKAQIVL 142 >gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] Length = 323 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 15/120 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ WK LT +E+ + R L + ++ V ++A R Sbjct: 32 NFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGLTLLDTIQNTVGAPALMADAR-- 86 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQ 164 P L AF EAVH+ ++ + ++L +DE F E P + KA L+ Sbjct: 87 -TPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEA--FRWAEENPLLQKKAQLVLE 143 >gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 319 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 323 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ WK LT++E+ + R L + ++ V ++A R Sbjct: 32 NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMADAR-- 86 Query: 109 SNPECRQYLLRQAFEEAVH----SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 P L AF EAVH S F + T+ +DE F E P + KA L+ Sbjct: 87 -TPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEA--FRWADENPLLQKKAQLVLE 143 >gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL N1-067] gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL S4-171] Length = 349 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQKRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] Length = 326 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT+ E+ M R +++ +++ Sbjct: 34 VGNFWLPEKVPVSNDIQSWAT---LTEAEKTMTTRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F E P++ KA L Y Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEA--FRWSEENPNLQRKAEIVLDY 148 >gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] Length = 320 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 112 >gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium resistens DSM 45100] Length = 332 Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 14/112 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +DL W NGL+D ER + R +++ A ++ + Sbjct: 43 NFWLPEKVPLSNDLKDW---NGLSDIERTLTMRVFTGLTLLDTMQATVGEISQIQDAQTE 99 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 AF ++VH+ ++ + ++L PSI A WA+ Sbjct: 100 HEEAVYTNIAFMQSVHARSYSSVFSTLA-----------NTPSINAAYEWAV 140 >gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 331 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 17/113 (15%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ + D W+ GL + R I R FF + E Sbjct: 32 LPLKL------FAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEE 82 Query: 95 LVANNI-----VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I +A L + YL + AFEEA H F+ + +LG+ E Sbjct: 83 AVTEDIQPFLRAMAAEGRLGD---EMYLTQFAFEEARHVQAFRLWLDALGVHE 132 >gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit [Mycobacterium abscessus] Length = 324 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LTD E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIQSW---NTLTDHEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +D+ F E P++ KA ++Y Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDA--FRWSEENPNLQRKAEIVMEY 146 >gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 319 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans GPE PC73] gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans] Length = 346 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 14/156 (8%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D K L+ E+ +G A+ +S Sbjct: 36 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---KQYGELSAREKNAYDSIIGLLATLDS-P 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 92 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLADQNRVFEIARTHPT 151 Query: 155 ITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 I A+ +Q ++ + + + + L RSL Sbjct: 152 IVARNQPIMQ--------AYDDFMREKTAETLLRSL 179 >gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 380 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + +K L D ER + NL + +S+ + + + S PE Sbjct: 49 WRPEEVDISQDRIDYMTK--LADHERHIFNSNLRYQTLLDSVQGRSPNVTLLPLASIPEL 106 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 ++ AF E +HS ++ +II + D E+F+ I ++A+ Sbjct: 107 ETWIETWAFSETIHSRSYTHIIRGMVDDPSEIFDGIVTDEQIISRAS 153 >gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis] Length = 849 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 27/165 (16%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSA--------------CNNHWM-------PTEVP 60 K +L+ D + PLK W +Y A C H +V Sbjct: 557 KPLLDENPDRYCMFPLKEDRVWSQYKKAEASRPSGQAPNDPLCMAHTTFWTTFWTAEDVD 616 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 D W+ + L ER + L + A+S+ L+ +N+V + E R + Q Sbjct: 617 FSSDARDWQDR--LAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFYAFQ 674 Query: 121 AFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKANW 161 F++ VH+ I+ +L E +L + R V P+ AKA W Sbjct: 675 LFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAW 719 >gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 319 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium vanbaalenii PYR-1] Length = 324 Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 10/137 (7%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K WE+ N W+P +VP+ +D+ W N LT E+ + R Sbjct: 17 NRLQDDKDAEVWER---LTGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQY 165 E P++ KA +QY Sbjct: 130 SEENPNLQRKAEIVMQY 146 >gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 138 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEKL---TEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna] gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna] Length = 322 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P ++P+ +D+ W LT++ERL+ R +++ +++ Sbjct: 30 TNNFWLPEKIPVSNDVQSWHQ---LTEEERLITMRVFTGLTMLDTIQGTVGAVSLIPDAI 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 87 TPHEEAVYTNIAFMESVHARSYSNIFSTL 115 >gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803] gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803] Length = 355 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 6/111 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87 +++ QL ++Y WA Y N W+P + + D+ W LT++ER L Sbjct: 37 TNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDVTDYW----NLTNEERYAFDGILS 92 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + +S+ NI + ++ PE + Q +E +H+ ++QY+I ++ Sbjct: 93 YLTFLDSVQTCNIP-HLKSSVTAPEISLCMAEQISQEGMHNQSYQYMIETI 142 >gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 313 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D W+ LT+DER R F + E Sbjct: 19 LPLKL------FAGGNAKFWNPADIDFSRDREDWER---LTEDERSYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H F+ + ++G+ E +L +V Sbjct: 70 SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITE-DLHYFLDDV 128 Query: 153 PS 154 P+ Sbjct: 129 PT 130 >gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 324 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 10/137 (7%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +DL W + LT E+ M R Sbjct: 17 NRLQDEKDAEVWDR---LTGNFWLPEKVPVSNDLPSWGT---LTAHEKQMTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQY 165 E P++ KA +QY Sbjct: 130 SEENPNLQRKAEIVMQY 146 >gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp. FB24] gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter sp. FB24] Length = 324 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 5/120 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT DE+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA + Y Q Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENANLQKKAQIVMDYYQ 148 >gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 319 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDLEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] Length = 333 Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L ++E+ + R +++ ++ P Sbjct: 43 NFWLPEKVPLSNDVQSWAT---LREEEQTLTIRVFTGLTLLDTIQNTVGAPSMMPDAQTP 99 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L + E F E P + AKA L+ Sbjct: 100 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFRWSEENPQLQAKARLILEEYDAA 159 Query: 170 SSP 172 S P Sbjct: 160 SDP 162 >gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus nasoniae] Length = 321 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 19/149 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N LT +E+ + R +++ N A+ Sbjct: 29 TTNFWLPEKIPLSNDIPTW---NTLTKEEKKLTIRVFTGLTLLDTIQNNVGAPALMTDAL 85 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L L D + + E ++ KA+ L+ Sbjct: 86 TPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYQWSEENSALQKKAHLILE--- 142 Query: 168 TLSSPSFHYWN----KRRRSRILTRSLRF 192 HY N K++ + + S F Sbjct: 143 -------HYCNTHPLKKKIASVFLESFLF 164 >gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] Length = 349 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L+++E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPNLSEEEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 324 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W + LT E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 89 TPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRWSEENPNLQRKAEIVMQY 146 >gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] Length = 369 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D K L ++E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDLQRDR---KDFIALPENEKHIFLSNLKYQTLLDSVQGRSPNVAFLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ AF E VHS ++ +II ++ + ++F P I +A Sbjct: 106 ETWIETWAFSETVHSRSYTHIIRNIVTEPDQIFEDIVTTPEIIERA 151 >gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] Length = 334 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LTD E+ + R +++ +++ + Sbjct: 42 TGNFWLPEKVPVSNDIPSWGT---LTDYEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAT 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 99 TPHEEAVLTNIAFMESVHAKSYSSIFSTL 127 >gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium avium 104] Length = 324 Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W + LT E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 89 TPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRWSEENPNLQRKAEIVMQY 146 >gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] Length = 334 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L +DE+ + R +++ + +++ Sbjct: 42 VGNFWLPEKVPLSNDIQSWHT---LNEDEQRLTMRVFTGLTLLDTIQGSVGAVSLIPDAL 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDE-GELFNMYREVPSITAKANWALQ 164 P AF E+VH+ ++ I ++L G E E F E P++ KA L+ Sbjct: 99 TPHEEAVYTNIAFMESVHAKSYSSIFSTLTGTPEIDEAFRWSEENPALQKKAAIVLE 155 >gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] Length = 319 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W++ L DE+ M R ++L +++ Sbjct: 27 TGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 84 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 112 >gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] Length = 294 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 +P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + NN + Y ++ P Sbjct: 1 LPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD-IEVNNCYMKHYSNIFKP-TE 56 Query: 115 QYLLRQAFE--EAVHSHTFQYIITSLGLDEGE 144 ++ AF E +H + Y++ ++G+ E E Sbjct: 57 VCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE 88 >gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 314 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ + W + LTD ER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H+ F+ + S+G+ G+L ++ Sbjct: 70 AVTEDIQPFMAAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-TGDLHGYLDDL 128 Query: 153 PS 154 PS Sbjct: 129 PS 130 >gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit, partial [Hydra magnipapillata] Length = 261 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 17/133 (12%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL--MIKRNLGFFASSESL 95 K+ W+ Y + +W E+ +D + L D+ + IKR L FFA ++S+ Sbjct: 57 KHKVIWDLYKKQKDAYWTAEEIDFSND-----RHDFLKVDKNIQHFIKRILAFFAGADSI 111 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE---EAVHSHTFQYIITSLGLD---EGELFNMY 149 V N I + LS ++ + F+ E HS + ++ + D EL N + Sbjct: 112 VNIN----IKKKLSKITVKEAEIAYGFQQMMEDTHSEVYADMLIKIITDPVERDELINAF 167 Query: 150 REVPSITAKANWA 162 + V SI WA Sbjct: 168 KTVASIKRMIQWA 180 >gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] Length = 320 Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ WK LT++E+ + R +++ A+ P Sbjct: 29 NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMEDARTP 85 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWAL 163 L AF EAVH+ ++ + ++L +DE F E P + KA L Sbjct: 86 HEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEA--FRWAEENPLLQKKAQIIL 139 >gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ Y + N W P E+ D + + LT+ E+ K+ +G A +S+ Sbjct: 36 VRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAFKKIIGLLAFLDSVQ 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + A +L++ +F+E VH+ ++ Y+++SL Sbjct: 93 TDYSXRAA-EYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSL 133 >gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus hirsutus] Length = 249 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V +N+V + + PE R + Q +HS + +I SL D E +FN Sbjct: 1 IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60 Query: 152 VPSITAKANWALQ 164 VP + K +W L+ Sbjct: 61 VPCVKKKKDWVLR 73 >gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus sakei subsp. sakei 23K] gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus sakei subsp. sakei 23K] Length = 318 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L D+E+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++ ++ P L F E+VH+ ++ I ++L Sbjct: 75 ASLKANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] Length = 397 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D +++ L +++ + NL + +S+ +A + S PE Sbjct: 68 WRPEEVSLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSIQGRGPGMAFIPYCSLPEL 124 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 + F E +HS ++ YII ++ D E+F+ Sbjct: 125 EACMEVWGFMEMIHSRSYTYIIKNVYSDPSEVFD 158 >gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] Length = 328 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 7/122 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P EVP+ D+ W L++ ER++ KR L ++ N+ + ++ N + Sbjct: 39 WLPEEVPISKDIPSWSQ---LSESERVLYKRVLAGLTLLDTKQGNDGIPSMMELTENFQR 95 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLS 170 + L E +H+ ++ I T+L L + E+ +++ E P + KA L+ + Sbjct: 96 KAVLSFMGTMEEIHAKSYSSIFTTL-LSKQEINDLFVWIEEEPLLQNKAKLVLRQYKNTH 154 Query: 171 SP 172 +P Sbjct: 155 TP 156 >gi|308068541|ref|YP_003870146.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 321 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W + L+D E+ + LG +++ + I H+ + Sbjct: 29 WTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQIMEHVDGLQR 85 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQTLS 170 + L A E +H+ ++ I T+L E E+ ++R E P + KA QY + Sbjct: 86 KAVLSFMAMMEQIHAKSYSSIFTTLASTE-EIDGVFRWVEENPHLQTKAETIRQYYMNIH 144 Query: 171 SP 172 +P Sbjct: 145 TP 146 >gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide reductase 2) (R2f protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 319 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 11/145 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N LT +E+ + R +++ A+ Sbjct: 27 TTNFWLPEKIPLSNDITSW---NTLTTEEKKLTIRVFTGLTLLDTIQNTVGAPALMEDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L L D + + + S+ KA L Y Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEKSFSLQNKAKIILNYY- 142 Query: 168 TLSSPSFHYWNKRRRSRILTRSLRF 192 S+H+ K++ + + S F Sbjct: 143 -----SYHHPLKKKIASVFLESFLF 162 >gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus haemolyticus JCSC1435] gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus haemolyticus JCSC1435] Length = 322 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL 106 >gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus denitrificans PD1222] gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Paracoccus denitrificans PD1222] Length = 329 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 10/143 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L +ER + R +++ A+ P Sbjct: 39 NFWLPEKVPLSNDVQSWAT---LRPEERELTIRVFTGLTLLDTIQNTVGAPAMMPDALTP 95 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L L + F E P + KA L+ + Sbjct: 96 HEEAVLSNIAFMEAVHARSYSSIFSTLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAG 155 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 S P KR+ + + S F Sbjct: 156 SDPL-----KRKIASVFLESFMF 173 >gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] Length = 321 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W + L+D E+ + LG +++ + I H+ + Sbjct: 29 WTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQIMEHVDGLQR 85 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQTLS 170 + L A E +H+ ++ I T+L E E+ ++R E P + KA QY + Sbjct: 86 KAVLSFMAMMEQIHAKSYSSIFTTLASTE-EIDGVFRWVEENPHLQTKAETIRQYYMNIH 144 Query: 171 SP 172 +P Sbjct: 145 TP 146 >gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 324 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 10/137 (7%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +DL W + LT E+ + R Sbjct: 17 NRLQDEKDAEVWDR---LTGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQY 165 E P++ KA +QY Sbjct: 130 SEENPNLQRKAEIVMQY 146 >gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 349 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSSREKNAYDSIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 95 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2] gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2] gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid herpesvirus 2] gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2] gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2] gi|194346388|gb|ACF49570.1| UL40 [synthetic construct] gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2] gi|237626230|gb|ACR02753.1| UL40 [synthetic construct] gi|237626404|gb|ACR02926.1| UL40 [synthetic construct] Length = 343 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 12/116 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W TE + DDL + + LT++ER + F ++++ LV NI +L ++ S Sbjct: 63 NRWTETEFVISDDL---RDVSMLTEEERYFYRFLFTFLSAADDLVNLNIDNLLGLF---S 116 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANW 161 + Y Q EAVHS + I L L E P+I +K +W Sbjct: 117 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAIQSKLDW 172 >gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] Length = 320 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W + LT E+ M R +++ +++ Sbjct: 28 TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGLTLLDTIQGTVGAVSLIPDAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 85 TPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRWSEENPNLQRKAEIVMQY 142 >gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 319 Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++ V A+ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVG---APALMSDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L D ++ E S+ KAN L+Y Q Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSEECESLQRKANLVLEYYQ 143 Query: 168 T 168 Sbjct: 144 A 144 >gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2] Length = 343 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 12/116 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W TE + DDL + + LT++ER + F ++++ LV NI +L ++ S Sbjct: 63 NRWTETEFVISDDL---RDVSMLTEEERYFYRFLFTFLSAADDLVNLNIDNLLGLF---S 116 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANW 161 + Y Q EAVHS + I L L E P+I +K +W Sbjct: 117 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAIQSKLDW 172 >gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] Length = 387 Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D ++ LT +++ + NL + +S+ +A + S PE Sbjct: 58 WRPEEVSLQKDRGDYQQ---LTPEQKHIFTSNLKYQIMLDSVQGRAPGMAFAPYCSLPEL 114 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 + F E +HS ++ YII ++ D E+F+ Sbjct: 115 EGCINVWQFMEMIHSRSYTYIIKNVYSDPSEVFD 148 >gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] Length = 334 Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LT+ E+ + R +++ +++ + Sbjct: 42 TGNFWLPEKVPVSNDIPSW---NTLTEYEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAT 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 99 TPHEEAVLTNIAFMESVHAKSYSSIFSTL 127 >gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 QL P++Y WA+ Y A N W P EV + DLA +K+ L R+++K+ L Sbjct: 19 QLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKN---LQKTRRMLLKQLLA 70 >gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small chain [Hydra magnipapillata] Length = 363 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 17/133 (12%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL--MIKRNLGFFASSESL 95 K+ W+ Y + +W E+ +D + L D+ + IKR L FFA ++S+ Sbjct: 57 KHKVIWDLYKKQKDAYWTAEEIDFSND-----RHDFLKVDKNIQHFIKRILAFFAGADSI 111 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE---EAVHSHTFQYIITSLGLD---EGELFNMY 149 V N I + LS ++ + F+ E HS + ++ + D EL N + Sbjct: 112 VNIN----IKKKLSKITVKEAEIAYGFQQMMEDTHSEVYADMLIKIITDPVERDELINAF 167 Query: 150 REVPSITAKANWA 162 + V SI WA Sbjct: 168 KTVASIKRMIQWA 180 >gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage NCTC12673] Length = 378 Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 11/141 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF---FASSESLVANNIVLAIYRHLSN 110 W P E+ M + KS L + + IK NL F S ++ +NI++ + Sbjct: 48 WFPEEISM---IHEPKSFIELPEHNQRQIKANLTFQTLMDSGQNRGLDNILIPLVTSSGL 104 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 C L QA+ E +HS ++ +II S+ + ++F+ Y E P I + N + ++L Sbjct: 105 EGC---LKTQAYFEYIHSRSYSHIIKSVFPNPTDVFDEYCEYPEIKTRINDEIDTYESLE 161 Query: 171 SPSFHYWNKRRRSRILTRSLR 191 N + +IL LR Sbjct: 162 GSLEE--NDENKLKILEACLR 180 >gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 335 Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT +E+ + R +++ +++ Sbjct: 43 TGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 99 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L + + F E P++ KA L Y Sbjct: 100 TPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQIVLDY 157 >gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] Length = 182 Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W + LT E+ + R +++ + P Sbjct: 32 NFWLPEKIPLSNDIPSWST---LTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDALTP 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 L F EAVH+ ++ I ++L L D E + E P + KA L+Y Q Sbjct: 89 HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYRWSEENPYLQKKAEIILRYYQ 146 >gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. MCS] gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. KMS] gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. JLS] Length = 320 Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 28 TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 85 TPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRWSEENPNLQRKAEIVMQY 142 >gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium salmoninarum ATCC 33209] gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium salmoninarum ATCC 33209] Length = 325 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT DE+ + R ++L +++ Sbjct: 33 VNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLLDTLQGTVGAVSLIPDAI 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 90 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 118 >gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] Length = 347 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFELARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] Length = 324 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LTD+ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWSS---LTDEERKLTIRVFTGLTLLDTIQNTVGAISLLADAITE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S] gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S] Length = 329 Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT +E+ + R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L + + F E P++ KA L Y Sbjct: 94 TPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQIVLDY 151 >gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] Length = 377 Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + GL D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEIDVSQDRIDYA---GLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ +D +F+ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNISVDPSSIFD 139 >gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. 8004] gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris] Length = 347 Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01] Length = 381 Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + Q L KY + + W P EV +Q D + +++ L +++ + NL + Sbjct: 29 IQQYLDYKYPLFEKLTQTQLGFFWRPEEVSLQKDRSDYQN---LRPEQKHIFTSNLKYQV 85 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 +S+ LA + S PE + F E +HS ++ +II +L E+F+ Sbjct: 86 MLDSVQGRGPSLAFLPYCSLPELESCMEVWGFMEMIHSRSYTHIIKNLYPQPEEVFSTIL 145 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWN 178 I +A + + + + HY N Sbjct: 146 SDSKIMERAKSVTESYDSFINAAHHYDN 173 >gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] Length = 325 Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 33 VGNFWVPEKVPVSNDIQSWAT---LTPQEQELTTRVFTGLTLLDTIQGTVGAVSLIPDAL 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L +DE F E P + KA L+Y Sbjct: 90 TPHEEAVLTNIAFMESVHAKSYSTIFSTLISTPEIDEA--FRWSEENPHLQRKAEIILEY 147 >gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] Length = 326 Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LTD E+ + R +++ +++ Sbjct: 34 VNNFWLPEKVPVSNDIPSWGT---LTDVEKTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 119 >gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] Length = 388 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + ++S L +++ + NL + +S+ +A + + PE Sbjct: 59 WRPEEVSLQKDRSDYQS---LRPEQKHIFTSNLKYQILLDSVQGRGPGMAFAPYCALPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + F E +HS ++ YII ++ + E+F+ + I +AN Sbjct: 116 EGAMNVWQFMEMIHSRSYTYIIKNVYPNPAEVFDTILDDEKILKRAN 162 >gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 343 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+P+E+PM D ++ LT E+ K+ +G A +S+ N V + + ++ Sbjct: 48 NHWIPSEIPMNKDKLQFEQ---LTAQEQETYKKIIGLLAVLDSM-QTNFVTDVGNYFTDS 103 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL 138 +E +H+ ++ Y+++S+ Sbjct: 104 SLVAIAAIINQQEVIHNQSYSYVLSSI 130 >gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 347 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 377 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDL 161 >gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] Length = 324 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 10/143 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ P Sbjct: 34 NFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTGLTLLDTIQNAVGAPAMMPDAQTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L + E F E P + AKA L Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFRWSDENPHLQAKARAILGTYAPG 150 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 + P KR+ + + S F Sbjct: 151 ADPL-----KRKVASVFLESFLF 168 >gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] Length = 327 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W L+ +ER + K+ LG ++ ANN + ++ N + Sbjct: 34 WLPEEISVSKDVKVWSE---LSPEERNLYKKVLGGLTLLDTKQANNGIPSMMSLTDNLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL-QYTQT 168 + L E +H+ ++ I T+L + E+F P++ KA L QY T Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIVLAQYENT 148 >gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 28 TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 85 TPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTSEIDDAFRWSEENPNLQRKAEIVMQY 142 >gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 349 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 95 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus jostii RHA1] gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1] Length = 321 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 29 VGNFWLPEKVPVSNDIPSWGT---LTPQEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 85 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L D + F E P++ KA + Y Q Sbjct: 86 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEIVMDYYQ 145 >gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 347 Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 347 Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas axonopodis pv. citri str. 306] gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] Length = 347 Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 347 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 349 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 95 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154 Query: 155 ITAK 158 I + Sbjct: 155 IIKR 158 >gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium gilvum PYR-GCK] Length = 320 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 28 TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 85 TPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTSEIDDAFRWSEENPNLQRKAEIVMQY 142 >gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 347 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 305 Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+ LT+DER R F + E V +I ++ R Sbjct: 24 WNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDIQPFMSAMRVEGRL 80 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 YL + AFEEA H F+ + ++G+ E +L ++P+ Sbjct: 81 GDEMYLTQFAFEEAKHVQVFRMWLDAVGVTE-DLHQYLDDIPT 122 >gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 347 Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAK 158 I + Sbjct: 153 IIKR 156 >gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 322 Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ WK+ L +DE+ M R +++ +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ + ++L E E F E + KA+ L Y Sbjct: 87 TPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSEENEYLQKKAHIVLDY 144 >gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus opacus B4] gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus B4] Length = 321 Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 29 VGNFWLPEKVPVSNDIPSWGT---LTAQEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 85 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L D + F E P++ KA + Y Q Sbjct: 86 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEIVMDYYQ 145 >gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] Length = 347 Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 L Y ++ Y N+W EV M D+ K L++ E+ + + A+ +S Sbjct: 37 LAYPHWYKTYKRLLGNYWQSDEVNMSTDV---KQFPLLSEKEQETFLKIISLLATLDSSQ 93 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS-LGLD-EGELFNMYREVPS 154 I+LA + ++P + L A +EAVH+ ++ YI++S + LD + E F + R+ P Sbjct: 94 TRTILLASL-YATDPSIQSILAVIAQQEAVHNESYSYILSSVVSLDKQNEAFEIGRKDPV 152 Query: 155 I 155 + Sbjct: 153 L 153 >gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella violacea DSS12] gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella violacea DSS12] Length = 376 Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 20/176 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61 NN L P+ G+ VNV AR DV KY +EK + + W P EV + Sbjct: 11 NNARLEPMFMGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D E+ + NL + +S+ + +A +S PE ++ + Sbjct: 57 SKDKIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--SPSFH 175 F E +HS ++ +II ++ D +F+ E I +A QY L + +FH Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILKRATDIAQYYDDLILLTQAFH 169 >gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] Length = 377 Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D G +F+ E I +A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRA 151 >gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 322 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 11/145 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ WK+ L +DE+ M R +++ +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ + ++L E E F E + KA+ L Y Sbjct: 87 TPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSEENEYLQKKAHIVLDYYH 146 Query: 168 TLSSPSFHYWNKRRRSRILTRSLRF 192 S KR+ + + S F Sbjct: 147 GNDS------EKRKVASTMLESFLF 165 >gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus E33L] gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus E33L] gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis] gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 322 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] Length = 319 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 328 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W++ D L + L + + V +++ H Sbjct: 37 TTNFWLPEKIPVSNDVQSWRNMTAQEQDATLKVFTGLTVLDTLQGTVG---AVSLIPHAV 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 P+ AF E+VH+ ++ I +L Sbjct: 94 TPQEEAVYTNIAFMESVHAKSYSNIFMTLA 123 >gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] Length = 324 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W N LT +E+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDIQSW---NTLTPEEQTLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 117 >gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] Length = 378 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 51 WRPEEVDVTQDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 107 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D G +F+ I +A+ QY L Sbjct: 108 ETWIETWSFYETIHSRSYTHIIRNIVNDPGVVFDDIVVNEEIQKRASDISQYYDDL 163 >gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 282 Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 11/106 (10%) Query: 38 KYGWAWEKYLSACNNHW-----MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 KY WA L + W P EV DD+ + LT ++ M S Sbjct: 35 KYTWA----LKLLGSLWKQIPGFPKEVDTTDDVRDYAC--NLTTAKKRMYDLVWSQLISM 88 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +S NN+ I +++ PE L RQA+EEA HS ++ ++ ++ Sbjct: 89 DSFQTNNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAI 134 >gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea ananatis AJ13355] Length = 376 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I A+A QY L + Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMT 165 Query: 174 FHYWN 178 YW+ Sbjct: 166 -SYWH 169 >gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] Length = 380 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 16/174 (9%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D Q P+ + EK LS W P EV + Sbjct: 15 NNQLLEPMFFGQP-VNV-------ARFD-QQKYPI-FEKLIEKQLSF---FWRPEEVDVA 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L D E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 62 RDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSF 118 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 E +HS ++ +II ++ D +F+ E I +A Y TL + +Y Sbjct: 119 SETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYY 172 >gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] Length = 322 Score = 37.7 bits (86), Expect = 0.73, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E+++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIVYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGIITGYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 322 Score = 37.7 bits (86), Expect = 0.75, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] Length = 319 Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Ames] gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Sterne] gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis str. A2012] gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis str. Al Hakam] gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. A1055] gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Kruger B] gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Vollum] gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Australia 94] gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis CI] gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Ames] gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Sterne] gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus anthracis] gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bacillus thuringiensis str. Al Hakam] gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus] gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus biovar anthracis str. CI] gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 322 Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] Length = 321 Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 14/153 (9%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 W++ +S N W+P +VP+ +D+ W + LT E+ + R +++ Sbjct: 24 VWDRLVS---NFWLPEKVPVSNDIPSWGT---LTAQEQQLTMRVFTGLTLLDTIQGTVGA 77 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKA 159 +++ P AF E+VH+ ++ I ++L D + F E P++ KA Sbjct: 78 VSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFRWSEENPNLQRKA 137 Query: 160 NWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 L Y SP KR+ + L S F Sbjct: 138 QIVLDYYNG-ESPL-----KRKVASTLLESFLF 164 >gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] Length = 386 Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 12/149 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + + D E+ NL + +S+ A +S+P Sbjct: 47 WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 103 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 +L F E +HS ++ +I+ + +D F+ + P+I +A QY + Sbjct: 104 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGQYYDDVLYWI 163 Query: 170 -----SSPSFHYWNKRRRSRILTRSLRFL 193 + YW +R L + RF Sbjct: 164 RKYENAKEDLRYWEERDDHTALDDARRFF 192 >gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] Length = 376 Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A +K L E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDLSRDRADFKK---LPAHEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ AF E +HS ++ +II ++ D E+F+ SI +A+ Y + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSEIFDDIVNNESIIQRASSVSHYYDSF 161 >gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103] gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103] Length = 387 Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 60 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 116 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I A+A QY L + Sbjct: 117 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMT 176 Query: 174 FHYWN 178 YW+ Sbjct: 177 -SYWH 180 >gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-23m63] gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] Length = 323 Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ N + Sbjct: 34 WLPEEISVSKDIKIW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170 + L E +H+ ++ I +L + ELF P++ KA+ L QY T + Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLVLAQYENTTN 150 Query: 171 SPSFH 175 + Sbjct: 151 QEGLY 155 >gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2] Length = 384 Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D +++ L +++ + NL + +S+ +A + S PE Sbjct: 53 WRPEEVSLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 + +F E +HS ++ Y+I ++ D E+F+ Sbjct: 110 EACMEVWSFMEMIHSRSYTYVIKNVYADPSEVFD 143 >gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] Length = 322 Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGIITGYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 319 Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 19/97 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ N +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLNAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter aurescens TC1] gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter aurescens TC1] Length = 324 Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 7/121 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT DE+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P AF E+VH+ ++ I ++L E+ + +R E ++ KA + Y Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-CSTKEIDDAFRWSLENENLQKKAQIVMDYY 147 Query: 167 Q 167 Q Sbjct: 148 Q 148 >gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 328 Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ WK + + + L + + V L+I + Sbjct: 36 TSNFWLPEKVPVSNDIPTWKIMDEAEQWATMQVFTGLTMLDTMQGTVG---ALSILPDAA 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 P AF E+VH+ ++ I +L + P+I NW Q Sbjct: 93 TPHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------DTPTINHAFNWGRQ 136 >gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007] Length = 642 Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 10/97 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN- 110 N W E+ DLA+W L + R IK L F A + +V AI H+SN Sbjct: 87 NQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVKE----AIPMHMSNF 139 Query: 111 --PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 EC ++ Q E+ H + +T+ ++ EL Sbjct: 140 PLTECGKFFQEQLINESEHQKLYTKFLTTFAHNKEEL 176 >gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium profundum SS9] gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit [Photobacterium profundum SS9] Length = 377 Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A +Y L + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEYIIKRAGDISKYYDDLIAAT 165 Query: 174 FHY 176 Y Sbjct: 166 SDY 168 >gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] Length = 376 Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A QY TL + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISQYYDTLIELT 165 Query: 174 FHYWN 178 YW+ Sbjct: 166 -SYWH 169 >gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 319 Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L D ++ E S+ KAN L Y Q Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSEESESLQRKANLVLDYYQ 143 Query: 168 T 168 Sbjct: 144 A 144 >gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] Length = 319 Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 19/97 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W+S N +++L I+ G A + SL+A+ + Sbjct: 27 TSNFWLPEKVPLSNDIPAWQSLNAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADALT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus flagellatus KT] gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Methylobacillus flagellatus KT] Length = 377 Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 ++ AF E +HS ++ +II ++ D +F+ +I A+A+ Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVSDPALIFDDIVRNENIVARAS 152 >gi|326479075|gb|EGE03085.1| pentatricopeptide repeat protein [Trichophyton equinum CBS 127.97] Length = 729 Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 32/134 (23%) Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL---- 118 DDL ++K+ T++ +L+ LG +E + +V LSNP+ R+ L+ Sbjct: 173 DDLTYHRAKHANTEESKLLFGLYLGVLGKAEGTTSLKVV------LSNPQ-REVLVPSRP 225 Query: 119 -RQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +QA + + ++ ++++ L + + ELF YR +P SP Sbjct: 226 CKQAGNDDLDANGVSHLVSLLSQEDCSDQELFAAYRRIP-----------------SPGV 268 Query: 175 HYWNKRRRSRILTR 188 Y + R R ++L R Sbjct: 269 SYLSSRTRGKLLHR 282 >gi|326469852|gb|EGD93861.1| hypothetical protein TESG_01392 [Trichophyton tonsurans CBS 112818] Length = 729 Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 32/134 (23%) Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL---- 118 DDL ++K+ T++ +L+ LG +E + +V LSNP+ R+ L+ Sbjct: 173 DDLTYHRAKHANTEESKLLFGLYLGVLGKAEGTTSLKVV------LSNPQ-REVLVPSRP 225 Query: 119 -RQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +QA + + ++ ++++ L + + ELF YR +P SP Sbjct: 226 CKQAGNDDLDANGVSHLVSLLSQEDCSDQELFAAYRRIP-----------------SPGV 268 Query: 175 HYWNKRRRSRILTR 188 Y + R R ++L R Sbjct: 269 SYLSSRTRGKLLHR 282 >gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 320 Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 112 >gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] Length = 320 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 112 >gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium abscessus] Length = 313 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 16/125 (12%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 +PLK + W P + D A W+S LT+ ER R F + E Sbjct: 19 MPLKL------FAGGNAKFWDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNM- 148 V +I ++ R YL + AFEEA H+ F+ + ++G+ E G L ++ Sbjct: 70 SVTQDIQPFMSAMRAEGRLGDEMYLTQFAFEEAKHTQVFRLWLDAVGVSEDLHGYLDDLP 129 Query: 149 -YREV 152 YRE+ Sbjct: 130 AYREI 134 >gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMG 18311] gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus CNRZ1066] gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMD-9] gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus LMG 18311] gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus CNRZ1066] gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus LMD-9] gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus ND03] Length = 320 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] Length = 322 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDSEKETFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL 106 >gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 320 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 112 >gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB] gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB] Length = 376 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I A+A +Y L + Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMT 165 Query: 174 FHYWNK 179 +YW++ Sbjct: 166 -NYWHQ 170 >gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] Length = 193 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 324 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSW---NTLTPAEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA + Y Q Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148 >gi|300718018|ref|YP_003742821.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] Length = 319 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108 +N W+P +VP+ +D+ W S N D+++L I+ G + + N + A+ Sbjct: 27 TSNFWLPEKVPLSNDIPAWNSLNA--DEQQLTIRVFTGL--TLLDTIQNTVGAPALMADA 82 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P + +F EAVH+ ++ I ++L Sbjct: 83 VTPHEEAVMSNVSFMEAVHARSYSSIFSTL 112 >gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] Length = 325 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W S LT +E+ + R +++ A+ Sbjct: 32 TSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGLTLLDTIQNTVGAPALMADAV 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L AF EAVH+ ++ + ++L + + F E + AK+ L+ Sbjct: 89 TPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFRWSEENEFLQAKSRLILEEYN 148 Query: 168 TLSSPSFHYWNKRRRSRILTRSLRF 192 SSP K++ + + S F Sbjct: 149 ATSSPL-----KKKIASVFLESFLF 168 >gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella woodyi ATCC 51908] gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908] Length = 376 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 20/176 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61 N+ L P+ G+ VNV AR DV KY +EK + + W P EV + Sbjct: 11 NDARLEPMFLGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D E+ + NL + +S+ + +A +S PE ++ + Sbjct: 57 SKDKIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--SPSFH 175 F E +HS ++ +II ++ D +F+ E I +A+ +Y TL + +FH Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAEYYDTLIKLTQAFH 169 >gi|300717619|ref|YP_003742422.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] Length = 376 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQ---GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS ++ +II ++ D +F+ Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAIVFD 139 >gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] Length = 376 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSTDR---KDFAALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D ++F+ IT +A +Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVISDPSKVFDDIVSNEYITKRAESVTKYYDDLIEGV 165 Query: 174 FHYWN 178 +Y N Sbjct: 166 TYYQN 170 >gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] Length = 319 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] Length = 376 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 4/126 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I A+A +Y L + Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMT 165 Query: 174 FHYWNK 179 +YW++ Sbjct: 166 -NYWHQ 170 >gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] Length = 319 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] Length = 378 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 51 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ AF E +HS ++ +II ++ D +F+ E I +A Sbjct: 108 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRA 153 >gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] Length = 322 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F + P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIVTSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] Length = 316 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL WK+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWKN---LSDVEKKVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAK 158 + A+ ++ + + L F E++H+ T+ I+ SL D E+++ P + K Sbjct: 72 LYALKKNARTQKEKAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPKMQFK 131 Query: 159 A 159 A Sbjct: 132 A 132 >gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] Length = 322 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ L+D ER K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LSDSERETFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL 106 >gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05ZYH33] gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 98HAH33] gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|253751944|ref|YP_003025085.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33] gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33] gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus suis GZ1] gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis JS14] gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] Length = 319 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL 111 >gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05HAS68] Length = 320 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 76 QALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL 112 >gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T46] gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF2; AltName: Full=Ribonucleoside-diphosphate reductase nrdF2; AltName: Full=Ribonucleotide reductase R2-2 small subunit gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium tuberculosis] gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Mycobacterium tuberculosis CDC1551] gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2 [Mycobacterium tuberculosis H37Ra] gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2 [Mycobacterium tuberculosis F11] gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CDC1551A] gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis W-148] gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 4207] Length = 324 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 10/137 (7%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 17 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTM 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P L AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQY 165 E ++ KA LQY Sbjct: 130 SEENRNLQRKAEIVLQY 146 >gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 193 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36] gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36] Length = 352 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W P E+ M++D +W S + D L + L S + +L + R +N Sbjct: 57 NFWRPVEIKMKEDEKMWDSLTPIEQDTFLRVGTALACLDS----LQVKAILEVIRFTTNS 112 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL 138 A +EA H+ ++ YI +SL Sbjct: 113 ALANISAFIAQQEATHTTSYSYITSSL 139 >gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] Length = 386 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D A + LT ++R + NL + +S+ +A + S PE Sbjct: 57 WRPEEVSLQKDRADYAQ---LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 113 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 + F E +HS ++ YII ++ + ++F+ Sbjct: 114 EACMNVWEFMEMIHSRSYTYIIKNVYSNPEDVFD 147 >gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 322 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D A W++ + + L + Sbjct: 15 NRLPDPKDAQVWDRL---TGNFWLPEKVPLSNDSASWQTLTAQEQQTTVRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +++ V +++ P L AF E+VH+ ++ I ++L Sbjct: 72 TQATVG---AVSMIADAVTPHEEAVLTNIAFMESVHAKSYSSIFSTL 115 >gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 319 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] Length = 322 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus castenholzii DSM 13941] gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941] Length = 295 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P+++ D+ W++ LTDDER ++ R F + E V +++ + + Sbjct: 33 WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89 Query: 114 RQYLLRQAF--EEAVHSHTFQYIITSLGLDEGEL 145 + L +F EEA H+ F +T + G+L Sbjct: 90 EEELFLTSFLWEEAKHTDFFNRFLTEVAGVTGDL 123 >gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] Length = 343 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+ E+PM D + + L +E+ K N+ A +S+ V + R+ ++ Sbjct: 47 NHWIADEIPMSKDAQQFPT---LDSEEQRTFKINISLLAVLDSM-QTMFVSDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVP 153 +E VH+ ++ Y+++S+ D + E+F ++ P Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSDQEQKEIFEYWKHDP 146 >gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 323 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQH 145 >gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis ATCC 367] gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus brevis ATCC 367] Length = 331 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L D + ++ G ++L + + + Sbjct: 23 TWEK---LTEQFWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGM 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ R + P L F E+VH+ ++ I ++L Sbjct: 77 AALRRDIRTPHETAVLNNIQFMESVHAKSYSTIFSTL 113 >gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 323 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQH 145 >gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis ATCC 12228] gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis RP62A] gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus epidermidis ATCC 12228] gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus epidermidis RP62A] gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU144] gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU028] gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU045] Length = 322 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL 106 >gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis FRI909] Length = 322 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL 106 >gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 323 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQH 145 >gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella bacilliformis KC583] gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella bacilliformis KC583] Length = 324 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W+S LT++E+ + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGLTLLDTVQNTVGAVSLMADAVTE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 L AF EAVH+ ++ I ++L L D + F E + KA L++ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFRWSEENVYLQKKAKLVLEHYE 148 >gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] Length = 333 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 12 NQVSDMIDKATWEK---LTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGLTL 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++L + + A+ + + P L F E+VH+ ++ I ++L Sbjct: 66 LDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTL 112 >gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp. JLS] Length = 312 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S + L ER R F + E V +I +A R Sbjct: 32 WDPADIDFSKDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 YL + AFEEA H+ F+ + ++G+ Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGM 117 >gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus fermentum IFO 3956] gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 333 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 12 NQVSDMIDKATWEK---LTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGLTL 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++L + + A+ + + P L F E+VH+ ++ I ++L Sbjct: 66 LDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTL 112 >gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp. HTCC2999] Length = 376 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL+D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSKDRMDFQ---GLSDAEKHIFISNLKYQTLLDSVQGRSPNIALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +I+ +L D +F E I +A Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFTDPSNIFEDIVENEEIKRRA 151 >gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] Length = 319 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] Length = 322 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + E +H+ ++ +I T+L Sbjct: 82 KAVYSFMQMMEQIHAKSYSHIFTTL 106 >gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] Length = 377 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi] gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] Length = 322 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142 Query: 172 PS 173 P Sbjct: 143 PE 144 >gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] Length = 322 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + E +H+ ++ +I T+L Sbjct: 82 KAVYSFMQMMEQIHAKSYSHIFTTL 106 >gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus pentosaceus ATCC 25745] gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Pediococcus pentosaceus ATCC 25745] Length = 317 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + Sbjct: 20 TWEK---LTEQFWLDTRIPISNDLSDWRE---LDEDHKWVVGHVFGGLTLLDTLQSQDGM 73 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + + P L F E+VH+ ++ I +L Sbjct: 74 AALRKDIRTPHETAVLNNIQFMESVHAKSYSSIFETL 110 >gi|328543067|ref|YP_004303176.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum gilvum SL003B-26A1] gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum gilvum SL003B-26A1] Length = 325 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 10/143 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + + + L + ++++ ++A P Sbjct: 34 NFWLPEKVPLSNDIPSWATLTAAEQQLTIRVFTGLTLLDTIQNMIGAPALMA---DAITP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L + + F E P + AK+ L Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFRWSAENPQLQAKSRLILNEYDAS 150 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 +P K++ + + S F Sbjct: 151 GTPL-----KKKIASVFLESFLF 168 >gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] Length = 322 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA +Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITRYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter chlorophenolicus A6] gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 324 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSW---NTLTPVEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA + Y Q Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148 >gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] Length = 322 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 322 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDPEKEAFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL 138 + A E +H+ ++ +I T+L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL 106 >gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia farcinica IFM 10152] gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit [Nocardia farcinica IFM 10152] Length = 320 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 9/122 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 28 TGNFWLPEKVPVSNDIPSW---NTLTPHEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L +DE F E ++ KA L Y Sbjct: 85 TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEA--FRWSEENRNLQRKAEIVLDY 142 Query: 166 TQ 167 Q Sbjct: 143 YQ 144 >gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] Length = 388 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 12/149 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + + D E+ NL + +S+ A +S+P Sbjct: 49 WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 +L F E +HS ++ +I+ + +D F+ + P+I +A +Y + Sbjct: 106 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWI 165 Query: 170 -----SSPSFHYWNKRRRSRILTRSLRFL 193 + YW +R L + RF Sbjct: 166 RKYENAKEDLRYWEERDDQTALDDARRFF 194 >gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium urealyticum DSM 7109] gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] Length = 334 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 20/124 (16%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNI 100 E +L N W+P +VP+ +DL W N L+D ER + R L + ++ V Sbjct: 37 EVWLRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGLTLLDTMQATVGE-- 91 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + I L+ E Y AF +AVH+ ++ + ++L P+I + Sbjct: 92 ISQIQDALTEHEEAVY-TNIAFMQAVHARSYSSVFSTLS-----------STPAINDAYD 139 Query: 161 WALQ 164 WA++ Sbjct: 140 WAVK 143 >gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella quintana str. Toulouse] gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str. Toulouse] Length = 324 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 33 GNFWLPEKVPLSNDIPSWAS---LTEEERKLTVRVFTGLTLLDTIQNTVGAISLMADAIT 89 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 90 EHEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella tribocorum CIP 105476] gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella tribocorum CIP 105476] Length = 324 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 32 TGNFWLPEKVPLSNDIPSWSS---LTEEERKLTIRVFTGLTLLDTIQNTVGAISLLADAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 89 TEHEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] Length = 319 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRR---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] Length = 324 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L E+ + +R E ++ KA L+Y Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENSNLQRKAEIVLEY 146 >gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] Length = 324 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] Length = 322 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium ulcerans Agy99] gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium ulcerans Agy99] Length = 324 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L E+ + +R E ++ KA L+Y Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENSNLQRKAEIVLEY 146 >gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 337 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I RN +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + AF A+H+ ++ I ++L Sbjct: 101 QTDHEQVIYTNFAFMVAIHARSYGTIFSTL 130 >gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella henselae str. Houston-1] gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str. Houston-1] Length = 324 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 33 GNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTIQNTVGAISLMADAIT 89 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 90 EHEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus weihenstephanensis KBAB4] gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis KBAB4] gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] Length = 322 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 377 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D G +F+ E I +A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEEILKRA 151 >gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni] Length = 322 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYHRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 425 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 17/180 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 QA +++ N+ +KR+ L P +Y ++ + +++W+ TE D+ +K+ Sbjct: 96 QAQKRKTNIFEKRI--------NLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKT 147 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + +TD ER IK + + E V IY + PE A E H+ Sbjct: 148 R--ITDVERSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEVGAVGATFAESEVRHADA 204 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 + +++ LGL++ F + ++ P + + +QY +T + NK IL SL Sbjct: 205 YSHLLEILGLNKE--FKLLKKKPVMMKR----VQYLETALKNAKSEDNKEYSESILLFSL 258 >gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae] gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi] Length = 322 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYHRRLLK 142 Query: 172 PS 173 P Sbjct: 143 PE 144 >gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] Length = 320 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAKEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 115 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++ +++ + L F E+VH+ ++ I ++L Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella rochalimae ATCC BAA-1498] gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. 1-1C] Length = 324 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 33 GNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAVT 89 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 90 EHEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus B4264] gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus] gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus] gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus] gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus B4264] gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] Length = 322 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] Length = 322 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA +Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITRYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki] Length = 322 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] Length = 377 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDL 161 >gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai] gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri] gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana] gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis] Length = 322 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PS 173 P Sbjct: 143 PE 144 >gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49] gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49] Length = 386 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 12/149 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + + D E+ NL + +S+ A +S+P Sbjct: 47 WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 103 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 +L F E +HS ++ +I+ + +D F+ + P+I +A +Y + Sbjct: 104 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWI 163 Query: 170 -----SSPSFHYWNKRRRSRILTRSLRFL 193 + YW +R L + RF Sbjct: 164 RKYENAKEDLRYWEERDDQTALDDARRFF 192 >gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1] gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain) [Mycobacterium gilvum PYR-GCK] gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1] Length = 312 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S L+ ER R F + E V +I +A R Sbjct: 32 WDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 YL + AFEEA H+ F+ + ++G+ E Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGITE 119 >gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium dendrobatidis JAM81] Length = 356 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W+ Y + N W EV M DDL ++ L+ E+ ++ + Sbjct: 29 LFPIQFNEIWQAYKNLEANFWSAEEVEMSDDLNGFEQ---LSRKEQSLMLQITSILCMGC 85 Query: 94 SLVANNIVLAIYR-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMY 149 L N +L+ Y + PE R + Q ++ +HS I+ E +L ++ Sbjct: 86 GL-NNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDMFSESEKQRDDLLDVI 144 Query: 150 REVPSITAKANWA 162 +++PS T WA Sbjct: 145 QQLPSRTMWTEWA 157 >gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] Length = 324 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRIPISNDLRTWRGN--MSDQERQTLNLVFGGLTTLDTLQSQDGM 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ + N + L F E+VH+ ++ I +L N E+ +I A + Sbjct: 80 ASLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKSEIEAIFDWADS 131 Query: 160 NWALQY 165 N LQY Sbjct: 132 NEFLQY 137 >gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani] Length = 322 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] Length = 376 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 20/176 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61 NN L P+ G+ VNV AR DV KY +EK + + W P EV + Sbjct: 11 NNACLEPMFMGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D E+ + NL + +S+ + +A +S PE ++ + Sbjct: 57 SKDKIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--SPSFH 175 F E +HS ++ +II ++ D +F+ + I +A QY L + +FH Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILKRATDIAQYYDDLILLTQAFH 169 >gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain) [Mycobacterium sp. MCS] gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp. KMS] Length = 312 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S + L ER R F + E V +I +A R Sbjct: 32 WDPADIDFSRDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 YL + AFEEA H+ F+ + ++G+ Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGM 117 >gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 14579] gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 14579] gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis] gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni] gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis] gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] Length = 322 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 318 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W++ L D + ++ G ++L + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ + + P L F E+VH+ ++ I ++L E E+F+ Sbjct: 75 ASLRKDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFD 122 >gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR 15-3] Length = 324 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 33 GNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLIADAVT 89 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 90 EHEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] Length = 376 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ LTD E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 ++ +F E +HS ++ +I+ +L D E+F Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIF 138 >gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella schoenbuchensis R1] Length = 324 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 33 GNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAIT 89 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 L AF EAVH+ ++ I ++L Sbjct: 90 EHEEAVLTNIAFMEAVHARSYSSIFSTL 117 >gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] Length = 377 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ + +F+ E I +A +Y L S + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALISAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] Length = 333 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LTD E+ + R +++ +++ Sbjct: 41 TGNFWLPEKVPVSNDIPSWGT---LTDYEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAL 97 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 98 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 126 >gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 342 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 ++ Y NHW+P+E+PM D + + L + + KR +G A +S+ V Sbjct: 38 YKLYRVLIGNHWIPSEIPMNVDKSDFPM---LPTNTQNTFKRIIGLLAVLDSM-QTMFVG 93 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153 + +L++ +E +H+ ++ Y+++SL ++ E+F ++ P Sbjct: 94 DVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSSLVSYTEQLEIFEYWKNDP 146 >gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus uberis 0140J] gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus uberis 0140J] Length = 319 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] Length = 193 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] Length = 387 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + + LT++++ + NL + +S+ +A + S PE Sbjct: 58 WRPEEVSLQKDRSDYAQ---LTENQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 114 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + F E +HS ++ +II ++ + ++F+ E + +A+ Sbjct: 115 EACMTVWEFMEMIHSRSYTHIIKNVYPNPSDVFDTILEDERVLERAS 161 >gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae 2603V/R] gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae NEM316] gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae A909] gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae 2603V/R] gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316] gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae A909] gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 319 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] Length = 348 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 18/157 (11%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIV 101 +EKY S W P E+P+ +D +WKS L++ ER I + G ++ + + Sbjct: 25 YEKYTSQL---WFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGL--NALDTLQGEVG 76 Query: 102 LAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQ-----YIITSLGLDEGELFNMYREVPSI 155 + RHL + R+ ++ Q E +H+ ++ ++ TS +E E+F R P + Sbjct: 77 MPALRHLVDGHIRKATIQFQGMMEDIHAKSYSLMNKTFLTTS---EEREVFEWVRTQPQL 133 Query: 156 TAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 K + + W K S +L +L + Sbjct: 134 QNKIAMIREIYDNPDVSNLGLWKKMVVSCMLETALFY 170 >gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 377 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDL 161 >gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii ATCC 27126] Length = 376 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ LTD E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 ++ +F E +HS ++ +I+ +L D E+F Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIF 138 >gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] Length = 322 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] Length = 376 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 3/107 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K + + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDLSTDR---KDFMNMPEHEKHIFLSNLKYQTLLDSVQGRSPNIAFLPVVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + AF E +HS ++ +II ++ + E+F+ P I +A+ Sbjct: 106 ETWFETWAFSETIHSRSYTHIIRNIITEPSEVFDQIVTNPEIIRRAD 152 >gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] Length = 364 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 74 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 127 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + AF +++H+ ++ I ++L E E+ YR Sbjct: 128 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR 168 >gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 342 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ D +W + L D++ + K+ LG ++ + + H+ +P+ Sbjct: 37 WLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVSLHMEDPQK 93 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + + A E +H+ ++ +I +L +E +F+ E P + KA+ + + L Sbjct: 94 KAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIITGHYRKLLK 153 Query: 172 PS 173 P Sbjct: 154 PD 155 >gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali symbiont] Length = 376 Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D ++F+ I A+A +Y L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDLIEMT 165 Query: 174 FHYWN 178 +YW+ Sbjct: 166 -NYWH 169 >gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium efficiens YS-314] gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens YS-314] gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] Length = 339 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 10/145 (6%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N +++ E L R +++ +++ + Sbjct: 46 TTNFWLPEKIPVSNDIQKW---NSMSEAEHLATLRVFTGLTLLDTIQGTVGAVSMIPDAT 102 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 L +F E+VH+ ++ I +L + E F R + KA L Y Q Sbjct: 103 THHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKRILDYYQ 162 Query: 168 TLSSPSFHYWNKRRRSRILTRSLRF 192 S+P+ +++ + ++ SL F Sbjct: 163 QDSTPA-----RKKIASVMLESLLF 182 >gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti] gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota] gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis] gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus] gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae] gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 322 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142 Query: 172 PS 173 P Sbjct: 143 PE 144 >gi|289606667|emb|CBI61081.1| unnamed protein product [Sordaria macrospora] Length = 59 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 Q P +Y WA++ + HWMP EVP+ +D W K LT ER ++ Sbjct: 8 KQYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQK--LTPHERNLL 56 >gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] Length = 331 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 41 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 94 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + AF +++H+ ++ I ++L E E+ YR Sbjct: 95 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR 135 >gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] Length = 317 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + Sbjct: 20 TWEK---LTEQFWLDTRIPISNDLSDWRE---LDEDHQWVVGHVFGGLTLLDTLQSQDGM 73 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + + P L F E+VH+ ++ I +L Sbjct: 74 AALRKDVRTPHETAVLNNIQFMESVHAKSYSSIFETL 110 >gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 343 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ D +W + L D++ + K+ LG ++ + + H+ +P+ Sbjct: 38 WLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVSLHMEDPQK 94 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + + A E +H+ ++ +I +L +E +F+ E P + KA+ + + L Sbjct: 95 KAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIITGHYRKLLK 154 Query: 172 PS 173 P Sbjct: 155 PD 156 >gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis ATCC 14018] gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] Length = 364 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 74 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 127 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + AF +++H+ ++ I ++L E E+ YR Sbjct: 128 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR 168 >gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] Length = 377 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D G +F+ E I +A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEEILKRA 151 >gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio sp. Ex25] gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. Ex25] gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] Length = 377 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] Length = 359 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 69 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 122 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + AF +++H+ ++ I ++L E E+ YR Sbjct: 123 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR 163 >gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 329 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL WK+ LT+ E+ R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGLTLLDTIQGTVGAVSLLPDAK 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 P AF E+VH+ ++ I +L Sbjct: 94 TPHEEAVYTNIAFMESVHAKSYSNIFMTLA 123 >gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae bacterium 198] Length = 325 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ + + P Sbjct: 34 NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L + E F E + AK+ L + Sbjct: 91 HEESVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRLILDEYNST 150 Query: 170 SSP 172 +SP Sbjct: 151 ASP 153 >gi|213864815|ref|ZP_03386934.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 170 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 19/97 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAI- 83 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 84 --------TPHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 17 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTM 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +++ +++ P L AF E+VH+ ++ I ++L Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL 117 >gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 318 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL W N +E+ R + ++L +++ Sbjct: 26 TGNFWLPEKIPVSNDLPKWGLMNA---EEQWATMRVFAGLTALDTLQGAVGAISLMPDAV 82 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF EAVH+ ++ I +L Sbjct: 83 TPHEEAVLCNIAFMEAVHAKSYSNIFMTL 111 >gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] Length = 193 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRL 140 >gi|221231890|ref|YP_002511042.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] Length = 320 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALREDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mutans UA159] gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus mutans UA159] gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] Length = 319 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAAEKDLVGKVFGGLTLLDTMQSQSGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] Length = 319 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 19/97 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ N +++L I+ G A + +L+A+++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLNAA--EQQLTIRVFTGLTLLDTIQNVAGAPALMADSLT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] Length = 322 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGIITGYYRRLLK 142 Query: 172 PS 173 P Sbjct: 143 PE 144 >gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 334 Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 14/112 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +DLA W+ LTD ER + + +++ A+ ++ + Sbjct: 44 NFWLPEKVPLSNDLADWRR---LTDLERELTMKVFTGLTMLDTVQASVGEISQIQDARTE 100 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 AF +AVH+ ++ + ++L P I A WA+ Sbjct: 101 HEEAVYTNIAFMQAVHAKSYSSVFSTLS-----------NTPDIDAAYQWAV 141 >gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 377 Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDF---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDL 161 >gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] Length = 323 Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 10/143 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +DL+ W LT+ E+ + R +++ + A+ Sbjct: 32 NFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGLTLLDTIQNSVGAPALMVDAVTQ 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L + E F E P + KA L Q Sbjct: 89 HEEAVLTNIAFMEAVHARSYSSVFSTLCTTKQIDEAFRWSEENPHLQRKAQLILHEYQAG 148 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 P K++ + + S F Sbjct: 149 ECPL-----KKKIASVFLESFLF 166 >gi|146284237|ref|YP_001174390.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145572442|gb|ABP81548.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] Length = 333 Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Query: 23 RMLNARSD--VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 R++NA V +L WA E AC + W+ E QDDLA W GLT E L Sbjct: 254 RLVNAGGSLLVTELCSHNQSWARE----ACGDLWLGFE---QDDLARWADAAGLTPGESL 306 Query: 81 MIKRNLGF 88 I GF Sbjct: 307 YIGLKNGF 314 >gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus] gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus] Length = 280 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTF 131 LT E+ +K L FFA + +V N+V + +S+ E + + QA E +H+ T+ Sbjct: 7 LTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAANELIHNETY 66 Query: 132 QYIITSL---GLDEGELFNMYREVPSITAKANWA 162 +I +L + + PSI ANW Sbjct: 67 MNLIDNLLPSPKKREKALDAISNYPSIRLIANWV 100 >gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] Length = 321 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ G ++L + + + Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSEPEKQLVGHVFGGLTLLDTLQSESGI 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + + P L F E+VH+ ++ I ++L + E+F P + AKA Sbjct: 76 DQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFEWTNTNPYLQAKA 135 >gi|302661364|ref|XP_003022351.1| pentatricopeptide repeat protein [Trichophyton verrucosum HKI 0517] gi|291186291|gb|EFE41733.1| pentatricopeptide repeat protein [Trichophyton verrucosum HKI 0517] Length = 646 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 32/134 (23%) Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL---- 118 DDL ++K+ T++ +L+ LG +E + +V LSNP+ R+ L+ Sbjct: 90 DDLTYNRAKHANTEESKLLFGLYLGVLGKAEGTTSLKVV------LSNPQ-REVLVPSRP 142 Query: 119 -RQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +QA + + ++ ++I+ L + + ELF YR +P SP Sbjct: 143 CKQAGNDDLDANGVSHLISLLNQEDCGDQELFAAYRRIP-----------------SPGV 185 Query: 175 HYWNKRRRSRILTR 188 Y + + R ++L R Sbjct: 186 SYLSSKTRGKLLHR 199 >gi|302500176|ref|XP_003012082.1| pentatricopeptide repeat protein [Arthroderma benhamiae CBS 112371] gi|291175638|gb|EFE31442.1| pentatricopeptide repeat protein [Arthroderma benhamiae CBS 112371] Length = 646 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 32/134 (23%) Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL---- 118 DDL ++K+ T++ +L+ LG +E + +V LSNP+ R+ L+ Sbjct: 90 DDLTYNRAKHANTEESKLLFGLYLGVLGKAEGTTSLKVV------LSNPQ-REVLVPSRP 142 Query: 119 -RQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 +QA + + ++ ++I+ L + + ELF YR +P SP Sbjct: 143 CKQAGNDDLDANGVSHLISLLNQEDCGDQELFAAYRRIP-----------------SPGV 185 Query: 175 HYWNKRRRSRILTR 188 Y + + R ++L R Sbjct: 186 SYLSSKTRGKLLHR 199 >gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide reductase 1) (B2 protein) (R2 protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 8/145 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 174 FHY-----WNKRRRSRILTRSLRFL 193 HY + + +T SLR L Sbjct: 166 NHYQLFGEGTHQIAGKTITASLRGL 190 >gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] Length = 323 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108 +N W+P ++P+ +D W + TD+++L I+ G + + N + + Sbjct: 31 TSNFWLPEKIPLSNDTVSWNTLK--TDEQQLTIRVFTGL--TLLDTIQNTVGAPCLMEDA 86 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQY 165 P L +F EAVH+ ++ I ++L +D E + E ++ KA L Y Sbjct: 87 QTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYRWSEENTALQNKAKIILSY 145 >gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus 10329] Length = 377 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] Length = 377 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] Length = 321 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 76 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 112 >gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 10987] gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus ATCC 10987] Length = 322 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 P 172 P Sbjct: 143 P 143 >gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2 gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 319 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 19/97 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 330 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 123 >gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 319 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 19/97 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|306819415|ref|ZP_07453122.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307701705|ref|ZP_07638721.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] gi|304647707|gb|EFM45025.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307613208|gb|EFN92461.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] Length = 333 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 20/117 (17%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYR 106 +N W+P +VP+ +DL W N L+D ER + R L + ++ V + I Sbjct: 42 TSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGLTMLDTVQATVGE--ISQIQD 96 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 ++ E Y AF +AVH+ ++ I ++L P I A WA+ Sbjct: 97 GITEHEQAIY-ANIAFMQAVHARSYSSIFSTLS-----------NTPEIDAAYTWAV 141 >gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] Length = 320 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] Length = 377 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 305 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 19/96 (19%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSA--AEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAI-- 83 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 84 -------TPHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] Length = 320 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis FRC41] gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis C231] gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis 1002] gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium pseudotuberculosis I19] Length = 328 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 11/145 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W + N L + + L + + V +++ Sbjct: 36 TGNFWLPEKVPVSNDLKSWGTLNDLEKTTTMRVFTGLTMLDTIQGTVG---AVSMIPDAI 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I +L + E F E ++ KA L Y + Sbjct: 93 TPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIVLSYYE 152 Query: 168 TLSSPSFHYWNKRRRSRILTRSLRF 192 + P KR+ + L S F Sbjct: 153 G-ADPL-----KRKVASTLLESFLF 171 >gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] Length = 321 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 YL W+P E+P+ +D ++W + L ++ +L +R LG ++ + I I Sbjct: 22 YLKQTEQFWLPEEIPVSEDKSIWDT---LDENIKLTYERILGGLTLLDTEQSTGIQ-KIA 77 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 N + L A E++H+ ++ I +L E ELFN E + K + Sbjct: 78 EKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQEKVD 134 >gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 319 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 19/97 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] Length = 377 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] Length = 319 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGI 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] Length = 320 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] Length = 333 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 20/117 (17%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYR 106 +N W+P +VP+ +DL W N L+D ER + R L + ++ V + I Sbjct: 42 TSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGLTMLDTVQATVGE--ISQIQD 96 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 ++ E Y AF +AVH+ ++ I ++L P I A WA+ Sbjct: 97 GITEHEQAIY-ANIAFMQAVHARSYSSIFSTLS-----------NTPEIDAAYTWAV 141 >gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus asymbiotica] Length = 319 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W N LT +E+ + R +++ A+ P Sbjct: 29 NFWLPEKVPLSNDIPSW---NTLTAEEKKLTIRVFTGLTLLDTIQNTVGAPALMEDALTP 85 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + +F EAVH+ ++ I ++L L Sbjct: 86 HEEAVMSNISFMEAVHARSYSSIFSTLCL 114 >gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus CMCP6] gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus YJ016] gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta [Vibrio vulnificus MO6-24/O] gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus CMCP6] gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016] gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus MO6-24/O] Length = 377 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] Length = 322 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N L +E+ M + ++L +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSW---NTLRPEEQDMTNKVFTNLTLLDTLQGTVGAISLISDAR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 87 TPHEEAVLTNIAFMESVHARSYSSIFSTL 115 >gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68] gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis 157F] gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. longum F8] gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68] gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 123 >gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 123 >gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 319 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 19/96 (19%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] Length = 330 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 123 >gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 319 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 19/96 (19%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 319 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 19/96 (19%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 319 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 19/96 (19%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 319 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 19/96 (19%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum NCC2705] gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium longum NCC2705] Length = 330 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 123 >gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 335 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 15/95 (15%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P ++P+ +DL W++ L+DDER + R L + V A +S Sbjct: 43 TSNFWLPEKMPLSNDLPDWRA---LSDDERTLTARVF------TGLTLLDTVQATVGEIS 93 Query: 110 N-PECRQ-----YLLRQAFEEAVHSHTFQYIITSL 138 P+ R AF +AVH+ ++ + +++ Sbjct: 94 QIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTM 128 >gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] Length = 322 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi ATCC BAA-1116] gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116] Length = 377 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 319 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 19/96 (19%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] Length = 320 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] Length = 377 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A +Y L + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENDYIIKRAGDISKYYDDLIAAT 165 Query: 174 FHY 176 Y Sbjct: 166 SDY 168 >gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes M1 GAS] gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS315] gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes SSI-1] gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS5005] gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS9429] gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS2096] gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes M1 GAS] gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit [Streptococcus pyogenes MGAS315] gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit [Streptococcus pyogenes SSI-1] gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS5005] gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS9429] gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS2096] gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 319 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis] gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae] gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto] gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 322 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGIITGYYRRLLK 142 Query: 172 PS 173 P Sbjct: 143 PE 144 >gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10270] gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10270] Length = 320 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 112 >gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS8232] gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10394] gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS6180] gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10750] gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes str. Manfredo] gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes MGAS8232] gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10394] gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS6180] gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10750] gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes str. Manfredo] Length = 319 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] Length = 320 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] Length = 326 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++ +++ + L F E+VH+ ++ I ++L Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium longum DJO10A] gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum DJO10A] gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum DJO10A] Length = 330 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 123 >gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] Length = 320 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 330 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 21/190 (11%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ + + N+L K W++ N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWDR---LTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W++ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 H+ ++ I ++L +DE F+ E + KA L Y + SP KR+ Sbjct: 112 HAKSYSSIFSTLCSTRQIDEA--FSWSEENEYLQRKARIVLDYYEG-DSPL-----KRKV 163 Query: 183 SRILTRSLRF 192 + L S F Sbjct: 164 ASTLLESFLF 173 >gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] Length = 320 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc gasicomitatum LMG 18811] gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc gasicomitatum LMG 18811] Length = 325 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRIPISNDLKTWRGN--MSDQERQTMNLVFGGLTTLDTLQSQDGM 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + N + L F E+VH+ ++ I +L Sbjct: 80 AQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL 116 >gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] Length = 325 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ + + P Sbjct: 34 NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L + E F E + AK+ L Sbjct: 91 HEEAVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRLILDEYDAT 150 Query: 170 SSP 172 +SP Sbjct: 151 ASP 153 >gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 377 Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ I +A +Y L S + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNEYIIKRAGDISRYYDELISAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] Length = 319 Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus pyogenes M49 591] gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes NZ131] gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Streptococcus pyogenes NZ131] Length = 319 Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] Length = 319 Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974] gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974M2] gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] Length = 320 Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 320 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + N + + L + ++ + ++ Sbjct: 28 TSNFWLPEKVPLSNDIPSWSTLNARERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P L +F EAVH+ ++ I ++L L E+ + YR E P++ K++ L + Sbjct: 85 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSH 142 >gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Taiwan19F-14] gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Streptococcus pneumoniae GA04375] Length = 320 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae R6] gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae D39] gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Hungary19A-6] gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae G54] gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae JJA] gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae P1031] gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae 70585] gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae AP200] gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus pneumoniae 670-6B] gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I, function unknown [Streptococcus pneumoniae R6] gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae D39] gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Hungary19A-6] gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus pneumoniae G54] gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 70585] gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae JJA] gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae P1031] gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV104] gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae OXC141] gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV200] gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae AP200] gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 670-6B] gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA41301] gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17545] Length = 320 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] Length = 321 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 23 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 77 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 113 >gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 377 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ + +F+ E I +A +Y L + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALIAAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20] Length = 324 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 89 TPHEEAVLTNIAFMESVHARSYSSIFSTL 117 >gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] Length = 321 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 23 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 77 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 113 >gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus Lc 705] gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus Lc 705] Length = 326 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++ +++ + L F E+VH+ ++ I ++L Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium atrosepticum SCRI1043] Length = 320 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108 +N W+P +VP+ +D+ W + N T + +L I+ G + + N + + Sbjct: 28 TSNFWLPEKVPLSNDIPSWSTLN--TRERQLTIRVFTGL--TLLDTIQNTLGAPTLMPDA 83 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P L +F EAVH+ ++ I ++L L E+ + YR E P++ K++ L + Sbjct: 84 VTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSH 142 >gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus GG] gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus GG] gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG] Length = 326 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++ +++ + L F E+VH+ ++ I ++L Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] Length = 317 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W S T+ E+ + R +++ + A+ + Sbjct: 25 SNFWLPEKVPLSNDIQSWSS---FTEAEKQLTIRVFTGLTLLDTIQSKAGAPALMKDALT 81 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P F EAVH+ ++ I ++L Sbjct: 82 PHEEAVFANICFMEAVHARSYSSIFSTL 109 >gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] Length = 296 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111 W P E+ D WK+ LT D++ +I + F + E V ++ L + R +++ Sbjct: 31 WDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQAGEEAVTRDL-LPLIRVVASEGR 86 Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 E YL FEEA H+ +F+ + + G+L ++E Sbjct: 87 LEEEMYLTTFLFEEAKHTESFRLFLDEVAEYRGDLAIYHKE 127 >gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17570] Length = 320 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] Length = 325 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 90 TPHEEAVLTNIAFMESVHARSYSSIFSTL 118 >gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 324 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 89 TPHEEAVLTNIAFMESVHARSYSSIFSTL 117 >gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] Length = 321 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 23 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 77 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 113 >gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] Length = 319 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + +++V ++A Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIVGAPALMA---DSI 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 324 Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L AF E+VH+ ++ I ++L Sbjct: 89 TPHEEAVLTNIAFMESVHARSYSSIFSTL 117 >gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora erythraea NRRL 2338] Length = 317 Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D W+ GLT++ER + F + E V ++ +A Sbjct: 37 WDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDLQPFMAAMAAEGRF 93 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 YL + FEEA H+ F+ + ++GL G+L + E P A Sbjct: 94 GDEMYLTQFCFEEAKHTQVFRLWMDAVGL-TGDLHSHVAENPGYRA 138 >gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1] gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1] Length = 346 Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust. Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y + Y +N W+P + + +D+ + + T + L + +G ++ +S + Sbjct: 35 IRYPQMYTIYKQIRSNFWIPQRISLVEDVRQFPNLPKRTQEAYLDV---IGQLSTLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVP 153 +VL R LS P + A +EA H ++ Y+++S+ D + E+F+ + Sbjct: 91 QTRLVLEFGRFLSEPTYQPIAANIAQQEATHEESYSYVLSSVVPDTNKQNEVFDKAKTNE 150 Query: 154 SITAKANWALQYTQTL 169 + + + +Y Q Sbjct: 151 DVLKRNDRVYKYYQEF 166 >gi|104783944|ref|YP_610442.1| ArsR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112931|emb|CAK17659.1| putative transcriptional regulator, ArsR family [Pseudomonas entomophila L48] Length = 330 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 7/58 (12%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 V +L GWA E AC + W+ E QDDLA W GLT + L + GF Sbjct: 263 VTELCSHDQGWARE----ACGDLWLGFE---QDDLARWADAAGLTPGDSLYVGLRNGF 313 >gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae TIGR4] gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus pneumoniae TIGR4] Length = 320 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] Length = 376 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENKEILKRA 151 >gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] Length = 326 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ WK+ D + + L + + V ++ + L Sbjct: 34 TSNFWLPEKVPLSNDVQSWKTLTAEEQDLTMKVFTGLTLLDTIQGTVGAVSLIPDAKTLH 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQY 165 + AF E+VH+ ++ I ++L +DE F +E + KA+ L+Y Sbjct: 94 EEAVYTNI---AFMESVHAKSYSSIFSTLSSMKQIDEA--FRWSKENEHLQRKADIVLRY 148 >gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] Length = 376 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRA 151 >gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] Length = 326 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L++ E+ M R +++ +++ Sbjct: 34 VGNFWVPEKVPVSNDIQSWAT---LSEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F P++ KA L+Y Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEA--FAWSEANPNLQRKAEIVLEY 148 >gi|300710888|ref|YP_003736702.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus jeotgali B3] gi|299124571|gb|ADJ14910.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus jeotgali B3] Length = 297 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYRH 107 A HW P E+ + D +G T + ++R L F + E+ V ++ LA+ Sbjct: 24 AVERHWDPAEIDLSVDRERLSQLDGATFTD---LRRTLALFGAGEAAVTEDLAPLAVV-- 78 Query: 108 LSNPECRQYLLRQAFEEAVHSHTF 131 L E + ++ Q +EEA H+ F Sbjct: 79 LEGIEDQMFVTTQLYEEAKHADFF 102 >gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] Length = 330 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 21/190 (11%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ + + N+L K W++ N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWDR---LTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W++ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWRA---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 H+ ++ I ++L +DE F+ E + KA L Y + SP KR+ Sbjct: 112 HAKSYSSIFSTLCSTRQIDEA--FSWSEENEYLQRKARIVLDYYEG-DSPL-----KRKV 163 Query: 183 SRILTRSLRF 192 + L S F Sbjct: 164 ASTLLESFLF 173 >gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis HI4320] Length = 376 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRA 151 >gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] Length = 377 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N LT E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRVDF---NKLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 ++ +F E +HS ++ +I+ +L D E+F Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFSDPSEIF 138 >gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis AD011] gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium animalis subsp. lactis AD011] gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis V9] Length = 321 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 9/122 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ ++D E + R +++ +++ Sbjct: 29 TGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 85 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F+ + P + KA L Y Sbjct: 86 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEA--FDWSEKNPHLQRKAQIVLDY 143 Query: 166 TQ 167 + Sbjct: 144 YE 145 >gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] Length = 321 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LPAKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont] Length = 319 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +DL W+S + + L + ++++ + Sbjct: 27 TNNFWLPEKVPLSNDLPAWQSLAPQQQQLTIRVFTGLTLLDTIQNVIG---APGLMEDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9] gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9] Length = 203 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK S W T VP+ +DL W++ + + D + + G ++L + + + Sbjct: 29 TWEKLNSQF---WTATRVPVSNDLDDWRTLDPVAKD---LYGKVFGGLTLLDTLQSQDGM 82 Query: 102 LAIYRH-LSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 L++ + +P R L F EA+H+ ++ I ++L Sbjct: 83 LSLLNNETQSPHMRAVLSNMLFMEAIHAQSYSTIFSTL 120 >gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 326 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 9/122 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ ++D E + R +++ +++ Sbjct: 34 TGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F+ + P + KA L Y Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEA--FDWSEKNPHLQRKAQIVLDY 148 Query: 166 TQ 167 + Sbjct: 149 YE 150 >gi|227876139|ref|ZP_03994257.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] gi|227843295|gb|EEJ53486.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] Length = 333 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 20/117 (17%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYR 106 +N W+P +VP+ +DL W N L+D ER + R L + ++ V + I Sbjct: 42 TSNFWLPEKVPLSNDLPSW---NQLSDMERNVTMRVFTGLTMLDTVQATVGE--ISQIQD 96 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 ++ E Y AF +AVH+ ++ I ++L P I A WA+ Sbjct: 97 GITEHEQAIY-ANIAFMQAVHARSYSSIFSTLS-----------NTPEIDAAYTWAV 141 >gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] Length = 321 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G F +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGFTLLDTVQSESGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + P L F E+VH+ ++ I ++L Sbjct: 75 DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29] Length = 376 Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A+ S+ L++ E+ + +NL + + +S+ L +S+ Sbjct: 48 WRPEEVDLSKD-AIDYSR--LSEQEQYVFTQNLKYQSLLDSVQGRAPNLVFLPIVSDVAL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 ++ +F E +HS ++ +I+ +L +D +F+ I A+A QY L S Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIMARATSVTQYYDDLIS 162 >gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] Length = 377 Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ + +F+ E I +A +Y L + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIVKRAGDISKYYDDLITVT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] Length = 320 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 NALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 338 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +DL W N LTD ER + + L + V A +S Sbjct: 42 TSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVF------TGLTLLDTVQATVGEIS 92 Query: 110 N-PECRQ-----YLLRQAFEEAVHSHTFQYIITSL 138 P+ R AF +AVH+ ++ + +++ Sbjct: 93 QIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTM 127 >gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] Length = 320 Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 NALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 380 Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 53 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 110 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRA 155 >gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC1] Length = 361 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 3/141 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L + E+ + NL + +S+ + + + +S PE Sbjct: 48 WRPEEIDVSKDR---RDFIELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E++H+ ++ +II ++ + E+ + P I +A +Y L S S Sbjct: 105 ETWIETWAFFESIHARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLS 164 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 Y ++ R +LC Sbjct: 165 LEYQQGKQVDMYELRKRLYLC 185 >gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18] gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18] Length = 325 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT++E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165 AF E+VH+ ++ I ++L + E F E + KA L Y Sbjct: 90 TAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWASENEHLQKKAKIVLSY 147 >gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei ATCC 334] gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei BL23] gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus casei ATCC 334] gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus casei BL23] gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W] gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II] Length = 326 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159 ++ +++ + L F E+VH+ ++ I ++L + E+F+ + KA Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKA 134 Query: 160 N 160 N Sbjct: 135 N 135 >gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] Length = 323 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAMTP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQH 145 >gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia tasmaniensis Et1/99] gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia tasmaniensis Et1/99] Length = 376 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS ++ +II ++ D +F+ Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPALVFD 139 >gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 103P14B1] gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC8] gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis CO72] Length = 361 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 3/141 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L + E+ + NL + +S+ + + + +S PE Sbjct: 48 WRPEEIDVSKDR---RDFIELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E++H+ ++ +II ++ + E+ + P I +A +Y L S S Sbjct: 105 ETWIETWAFFESIHARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLS 164 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 Y ++ R +LC Sbjct: 165 LEYQQGKQVDMYELRKRLYLC 185 >gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str. Zhang] gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str. Zhang] Length = 326 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159 ++ +++ + L F E+VH+ ++ I ++L + E+F+ + KA Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKA 134 Query: 160 N 160 N Sbjct: 135 N 135 >gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium jeikeium K411] gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium jeikeium K411] Length = 338 Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +DL W N LTD ER + + L + V A +S Sbjct: 42 TSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVF------TGLTLLDTVQATVGEIS 92 Query: 110 N-PECRQ-----YLLRQAFEEAVHSHTFQYIITSL 138 P+ R AF +AVH+ ++ + +++ Sbjct: 93 QIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTM 127 >gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] Length = 376 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSKDRIDYQQ---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D E+F+ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINDPSEVFD 139 >gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] Length = 376 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L++ E+ + +NL + + +S+ L +S+ Sbjct: 48 WRPEEVDLSKDAIDY---NQLSEAEQHVFTQNLKYQSLLDSVQGRAPNLVFLPIVSDVAL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +I+ +L +D +F+ I A+A QY L Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIMARATSVTQYYDNL 160 >gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora CFBP1430] gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora ATCC 49946] gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC 49946] gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora CFBP1430] Length = 319 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W N L+ DE+ + R +++ A+ Sbjct: 27 TSNFWLPEKVPLSNDIPSW---NSLSADEQQLTIRVFTGLTLLDTIQNTLGAPALMADAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P + +F EAVH+ ++ I ++L Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTL 112 >gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Chromohalobacter salexigens DSM 3043] Length = 326 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D++ W N LT+ E+ + R +++ + P Sbjct: 36 NFWLPEKVPLSNDVSAW---NTLTEQEQTLTIRVFTGLTLLDTIQGTIGAPTLIEDAVTP 92 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL 138 +F E+VH+ ++ I ++L Sbjct: 93 HEEAVFTNISFMESVHARSYSSIFSTL 119 >gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae Ech1591] gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591] Length = 376 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFD 139 >gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 376 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 16/145 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D Q P+ + EK LS W P E+ + Sbjct: 11 NNQLLEPMFLGQT-VNV-------ARYD-QQKYPI-FEELIEKQLSF---FWRPEEIDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D ++S L + E+ + NL + +S+ + +A+ +S PE ++ AF Sbjct: 58 RDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFN 147 E +HS ++ +II ++ D +F+ Sbjct: 115 SETIHSRSYTHIIRNIVNDPSCIFD 139 >gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 329 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT+ E+ R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGLTLLDTIQGTVGAVSLLPDAV 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 P AF E+VH+ ++ I +L Sbjct: 94 TPHEEAVYTNIAFMESVHAKSYSNIFMTLA 123 >gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] Length = 377 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K L E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSSDR---KDFQHLEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ + G +F+ E IT +A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNEPGVVFDDITENTEITKRA 151 >gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] Length = 382 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 7/110 (6%) Query: 54 WMPTEVPMQDDLA----LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 W P EV + D A LW++ G + + NLG+ +S+ + + S Sbjct: 47 WRPEEVNLTTDKAQFDKLWETNRGHL---QTIFTDNLGYQILMDSVQGRAPAIVLASICS 103 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + +++ F E +HS ++ +II +L D ++F+ I A+A Sbjct: 104 DVALETWIMTWTFSETIHSRSYTHIIRNLYSDPSKIFDGVLANKEIMARA 153 >gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] Length = 325 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT++E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165 AF E+VH+ ++ I ++L + E F E + KA L Y Sbjct: 90 TAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWAAENEHLQKKAKIVLSY 147 >gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] Length = 323 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQH 145 >gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. ANA-3] gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. ANA-3] Length = 391 Score = 34.7 bits (78), Expect = 6.2, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 64 WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 120 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 121 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFD 154 >gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus bovienii SS-2004] gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus bovienii SS-2004] Length = 376 Score = 34.7 bits (78), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFD 139 >gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort] gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort] Length = 349 Score = 34.7 bits (78), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 A + W+P + + D++ W N LTD E+ K+ L ++ + + I H Sbjct: 37 ATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQSVEGMSLIAHHE 93 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREV-PSITAKANWALQY 165 Q F E++H+ ++ +I T+L L++ L N + E P + KA + + Sbjct: 94 PRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPHLKKKAQYIGYF 153 Query: 166 TQTLSSPS 173 + L P+ Sbjct: 154 YEKLEQPN 161 >gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Score = 34.7 bits (78), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + ES+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS ++ +II ++ D +F+ Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFD 138 >gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS +F +II ++ D +F+ Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFD 138 >gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 333 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 42 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 98 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 99 PHEEAVLSNISFMEAVHARSYSSIFSTL 126 >gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus nematophila ATCC 19061] Length = 376 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDLIEMT 165 Query: 174 FHY 176 +Y Sbjct: 166 NYY 168 >gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] Length = 376 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + ++ Y + S Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPSVVFDDIVSNEEILKRARDISVYYDDLIEST 165 Query: 173 SFHY 176 +++ Sbjct: 166 GYYH 169 >gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis HI4320] Length = 322 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W N LT E+ + R +++ + P Sbjct: 32 NFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDAQTP 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 L F EAVH+ ++ I ++L L D + + E + K++ L+Y Q Sbjct: 89 HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEENTYLQKKSDIILRYYQ 146 >gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp. 638] gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Enterobacter sp. 638] Length = 376 Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDFQA---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFD 139 >gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] Length = 323 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 19/147 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D + + E + KA+ LQ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQ----- 144 Query: 170 SSPSFHYWN----KRRRSRILTRSLRF 192 HY N K++ + + S F Sbjct: 145 -----HYHNEDPLKKKIASVFLESFLF 166 >gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] Length = 320 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNVEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 A+ + P F E+VH+ ++ I ++L Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL 111 >gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 325 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W + L E+ M R +++ +++ Sbjct: 33 TGNFWLPEKIPLSNDIPSWST---LKPHEQQMTTRVFTGLTLLDTVQGTVGAVSLIPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L E E F E + KA L Y Sbjct: 90 TPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFRWSEENEYLQKKAKIILDY 147 >gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 323 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W N LT E+ + R L + ++ V ++A Sbjct: 33 NFWLPEKVPLSNDINSW---NTLTATEKKLTIRVFTGLTLLDTIQNTVGAPCLMA---DA 86 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQY 165 P L +F EAVH+ ++ I ++L D E + E ++ KA L Y Sbjct: 87 QTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSEENSALQNKAKIILSY 145 >gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica] Length = 376 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFD 139 >gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS +F +II ++ D +F+ Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFD 138 >gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] Length = 329 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIK--RNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + + D+++L I+ L + ++ V ++ Sbjct: 38 NFWLPEKVPLSNDIQSWATLH--PDEQQLTIRVFTGLTLLDTIQNTVGAPTLMP---DAL 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L AF EAVH+ ++ + ++L D E F E + AK+ L Sbjct: 93 TPHEEAVLTNIAFMEAVHARSYSSVFSTLCQTADVDEAFRWSEENEHLQAKSRLILDEYG 152 Query: 168 TLSSP 172 SP Sbjct: 153 AAGSP 157 >gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] Length = 405 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 78 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 134 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 135 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 194 Query: 174 FHYWN 178 YW+ Sbjct: 195 -SYWH 198 >gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 338 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + N L + + L + + V +++ Sbjct: 46 TGNFWLPEKVPLSNDIKSWNTLNALEQRTTMRVFTGLTMLDTIQGTVG---AVSLIPDAL 102 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 P AF E+VH+ ++ I +L Sbjct: 103 TPHEEAVYTNIAFMESVHAKSYSSIFQTLA 132 >gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] Length = 320 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTL 113 >gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella tarda FL6-60] Length = 376 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPALVFD 139 >gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] Length = 330 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 19/147 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 40 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 96 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D + + E + KA+ LQ Sbjct: 97 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQ----- 151 Query: 170 SSPSFHYWN----KRRRSRILTRSLRF 192 HY N K++ + + S F Sbjct: 152 -----HYHNDDPLKKKIASVFLESFLF 173 >gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] Length = 376 Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D+ + + LT+ E+ + +NL + + +S+ L +S+ Sbjct: 48 WRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQGRAPNLTFLPMVSDIAL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +I+ +L ++ E+F+ I +A QY L Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIMKRATAVTQYYDDL 160 >gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] Length = 325 Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRIPISNDLKNWRGN--MSDQERQTMNLVFGGLTTLDTLQSQDGM 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + N + L F E+VH+ ++ I +L N E+ +I A Sbjct: 80 AQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKSEIEAIFDWADT 131 Query: 160 NWALQY 165 N LQY Sbjct: 132 NEFLQY 137 >gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] Length = 337 Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust. Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W N LT E+ + R +++ + P Sbjct: 47 NFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDAQTP 103 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 L F EAVH+ ++ I ++L L D + + E + K++ L+Y Q Sbjct: 104 HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEENTYLQKKSDIILRYYQD- 162 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 S P K++ + + S F Sbjct: 163 SDPL-----KKKIASVFLESFLF 180 >gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 320 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTL 113 >gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] Length = 376 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I A+A +Y L + Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDLIEMT 165 Query: 174 FHYWN 178 +YW+ Sbjct: 166 -NYWH 169 >gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] Length = 155 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRA 151 >gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS +F +II ++ D +F+ Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFD 138 >gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] Length = 319 Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 21/150 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108 +N W+P +VP+ +D+ W S N ++++L I+ G + + N + A+ Sbjct: 27 TSNFWLPEKVPLSNDIPAWNSLNA--EEQQLTIRVFTGL--TLLDTIQNTLGAPALMADA 82 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYT 166 P + +F EAVH+ ++ I ++L D + E + AKA LQ Sbjct: 83 LTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEENAPLQAKAQIILQ-- 140 Query: 167 QTLSSPSFHYWN----KRRRSRILTRSLRF 192 HY++ K++ + + S F Sbjct: 141 --------HYYHDDALKKKIASVFLESFLF 162 >gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS +F +II ++ D +F+ Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFD 138 >gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-4] gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-7] gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-4] gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-7] Length = 376 Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFD 139 >gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica ST-640] gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica 020-06] Length = 377 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 151 >gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 337 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + AF A+H+ ++ I ++L Sbjct: 101 QTDHEQVIYTNFAFMVAIHARSYGTIFSTL 130 >gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 320 Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust. Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTL 113 >gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] Length = 376 Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDFQA---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y TL + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTLIEMT 165 Query: 174 FHY 176 +Y Sbjct: 166 SYY 168 >gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph Length = 375 Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + ES+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS ++ +II ++ D +F+ Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFD 138 >gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] Length = 377 Score = 34.3 bits (77), Expect = 8.2, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 151 >gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 396 Score = 34.3 bits (77), Expect = 8.2, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 69 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 125 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 126 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 185 Query: 174 FHYWN 178 YW+ Sbjct: 186 -SYWH 189 >gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis MC58] gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria meningitidis H44/76] gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M13399] gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis CU385] gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240013] gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis H44/76] gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240355] gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M04-240196] Length = 377 Score = 34.3 bits (77), Expect = 8.2, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 151 >gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp. MWYL1] gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1] Length = 377 Score = 34.3 bits (77), Expect = 8.2, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSTDR---KDFQRLEEHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 ++ +F E +HS ++ +II ++ D ++F+ IT +A+ +Y Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPTKIFDDIVTNEEITKRADSVSKY 157 >gi|325063539|gb|ADY67229.1| transcriptional regulator, AraC family [Agrobacterium sp. H13-3] Length = 346 Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 VP +D +ALW+ + D RL ++ GFFAS ++ N+ L Sbjct: 20 VPKRDAMALWRDSINVLFDARLRRSQDDGFFASVDAAFIGNVALG 64 >gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha275] Length = 345 Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 158 >gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis Z2491] gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis Z2491] gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis 8013] Length = 377 Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 151 >gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] Length = 377 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 161 >gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella ictaluri 93-146] gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Edwardsiella ictaluri 93-146] Length = 376 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPSLVFD 139 >gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] Length = 323 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P ++P+ +D+ W + LT +E+ + R +++ A+ + Sbjct: 31 TSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAI 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY 165 P +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 88 TPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQH 145 >gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] Length = 323 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTAEEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQY 165 +F EAVH+ ++ I ++L D E + E ++ KAN L++ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSEENIALQKKANIILEH 145 >gi|194895613|ref|XP_001978297.1| GG19514 [Drosophila erecta] gi|190649946|gb|EDV47224.1| GG19514 [Drosophila erecta] Length = 1882 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 EL YR+VPS A+ +W QY ++++ S YWN Sbjct: 1759 ELEKKYRKVPSEDAEPHWTEQYDASVNTCSHAYWN 1793 >gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis FAM18] gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis FAM18] gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis N1568] gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis OX99.30304] gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M6190] gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M0579] gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis ES14902] gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis 961-5945] gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis G2136] gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240149] Length = 377 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 151 >gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis MC58] gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha153] Length = 384 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 158 >gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] Length = 381 Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 53 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 165 >gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis WUE 2594] gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis NZ-05/33] Length = 384 Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 158 >gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] Length = 384 Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 158 >gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] Length = 377 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 161 >gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 376 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 165 Query: 174 FHYWN 178 YW+ Sbjct: 166 -SYWH 169 >gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] Length = 381 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 53 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 165 >gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis 053442] gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis 053442] Length = 384 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 158 >gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis alpha710] Length = 384 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 158 >gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 320 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTELTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTL 113 >gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] Length = 377 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 151 >gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] Length = 337 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y W+ Y N W P+EV ++ K + LTD+E+ + K + ++S A Sbjct: 34 RYKWSVNLYDLMNANTWFPSEVNTANE---KKHFDLLTDNEQAIYKLTFAQLSFNDS--A 88 Query: 98 NNIVLAIYRHLSNPE-CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L+ +R L+N + L Q +E HS ++ ++ + G + E+F++Y+ ++ Sbjct: 89 QEEYLSDFRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG-NSDEVFDLYKHDAALN 147 Query: 157 AK 158 K Sbjct: 148 RK 149 >gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 384 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 158 >gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895] Length = 319 Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + +++ A+ + Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAG---APALMQDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTL 112 >gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] Length = 330 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYRH 107 N W+P +VP+ +DL W + N L + + L + + V +L A+ H Sbjct: 38 TGNFWLPEKVPVSNDLKSWSTLNDLEKQTTMRVFTGLTLLDTIQGTVGAVSMLPDAVTLH 97 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165 L AF E+VH+ ++ I +L + E F E ++ KA L Y Sbjct: 98 -----EEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIILTY 152 >gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella oneidensis MR-1] gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella oneidensis MR-1] Length = 376 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFD 139 >gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae TN] gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae Br4923] gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae] gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae Br4923] Length = 325 Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W + LT E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPVSNDLPSWGT---LTASEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P AF E+VH+ ++ I ++L Sbjct: 90 TPHEEAVYTNIAFMESVHAKSYSSIFSTL 118 >gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] Length = 360 Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 32 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 89 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 144 >gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] Length = 343 Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust. Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 6/106 (5%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+ E+PM D + L +E+ K N+ A +S+ V + R+ ++ Sbjct: 47 NHWIADEIPMSKDAQQFPR---LDPEEQRTFKINISLLAVLDSM-QTMFVSDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSI 155 +E VH+ ++ Y+++S+ ++ E+F ++ P + Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSEQEQKEIFEYWKHDPVL 148 >gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus sp. JDR-2] gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2] Length = 318 Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W ++D ER + K LG +++ + I H+ + Sbjct: 26 WTDEEIPLSDDKMDWME---MSDTERTVYKNVLGGLTLLDTIQGGVGMPKILEHVDGLQR 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 + L + E +H+ ++ I T+L E Sbjct: 83 KAVLAFMSMMEQIHAKSYSSIFTTLASTE 111 >gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] Length = 376 Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFD 139 >gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O395] gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] Length = 389 Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 61 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 117 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 118 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 173 >gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] Length = 376 Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFD 139 >gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC BAA-2158] Length = 319 Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W N ++ DE+ + R +++ A+ Sbjct: 27 TSNFWLPEKVPLSNDIPSW---NSISADEQQLTIRVFTGLTLLDTIQNTLGAPALMADAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL 138 P + +F EAVH+ ++ I ++L Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTL 112 >gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae MJ-1236] gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae MJ-1236] Length = 381 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 53 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 165 >gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Antiqua] gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Nepal516] gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis FV-1] gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis CO92] gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pseudotuberculosis IP 32953] gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Nepal516] gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Antiqua] gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CO92] gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Pestoides F] gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis YPIII] gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+] gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D106004] gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D182038] gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 376 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFD 139 >gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] Length = 317 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 7/101 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSN 110 W P ++ D WK+ N + ER +I R F + E V ++ ++A+ R Sbjct: 37 WDPRDIDFSKDKEDWKAMN---EAERRVILRLCSLFVAGEEAVTLDLLPLIMAVARE-GR 92 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 E YL FEEA H+ F+ + + + +L +++ Sbjct: 93 LEEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDLSTFHKD 133 >gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio salmonicida LFI1238] gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio salmonicida LFI1238] Length = 377 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +I+ ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNLIQAT 165 Query: 174 FHY 176 Y Sbjct: 166 NDY 168 >gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] Length = 322 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + + P L F E+VH+ ++ I ++L Sbjct: 76 DQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL 112 >gi|195439308|ref|XP_002067573.1| GK16502 [Drosophila willistoni] gi|194163658|gb|EDW78559.1| GK16502 [Drosophila willistoni] Length = 1747 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 EL YR+VPS A+ +W QY ++++ S YWN Sbjct: 1624 ELEKKYRKVPSEEAEPHWTEQYDASVNTCSHAYWN 1658 >gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA 1090] gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae NCCP11945] gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae 35/02] gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae DGI18] gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA6140] gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA19] gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae MS11] gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID18] gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID1] gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID24-1] gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID332] gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-92-679] gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae NCCP11945] Length = 377 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E ITA+A Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARA 151 >gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia pestis KIM 10] gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Microtus str. 91001] Length = 391 Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 64 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 120 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ +F E +HS ++ +II ++ D +F+ Sbjct: 121 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFD 154 >gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 376 Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 ++ AF E +HS ++ +II ++ D +F+ Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFD 139 >gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] Length = 320 Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust. Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DSLT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL 138 P L +F EAVH+ ++ I ++L Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTL 113 >gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio cholerae LMA3894-4] Length = 377 Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 161 >gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp. TM1040] gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Ruegeria sp. TM1040] Length = 338 Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ + + P Sbjct: 47 NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 103 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L +F EAVH+ ++ + ++L + E F E + AK+ L Sbjct: 104 HEEAVLSNISFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRLILGEYDAT 163 Query: 170 SSP 172 +SP Sbjct: 164 ASP 166 Searching..................................................done Results from round 2 >gi|294840478|ref|ZP_06785161.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. 6014059] Length = 427 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] Length = 427 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ACICU] gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii ACICU] Length = 427 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AYE] gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] gi|294839369|ref|ZP_06784052.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. 6013113] gi|294859388|ref|ZP_06797157.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. 6013150] gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB056] gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB058] gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB059] gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AYE] gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter baumannii ATCC 17978] gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] Length = 427 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] Length = 427 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii SDF] gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii] Length = 427 Score = 277 bits (708), Expect = 7e-73, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] Length = 427 Score = 277 bits (708), Expect = 8e-73, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 151/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA+W L+YTQ+LS P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] Length = 427 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 117/189 (61%), Positives = 149/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+FH + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter calcoaceticus PHEA-2] Length = 370 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 25 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 84 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 85 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 144 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 145 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 204 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 205 LRNLIAFYC 213 >gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] Length = 427 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] Length = 427 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+FH R+ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2] gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii TCDC-AB0715] Length = 361 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 116/189 (61%), Positives = 150/189 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 16 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 75 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 76 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 135 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+FH R+ Sbjct: 136 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 195 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 196 LRNLIAFYC 204 >gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] Length = 458 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 115/190 (60%), Positives = 148/190 (77%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL + G RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M Sbjct: 110 ATGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNA 169 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DLALWK +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 170 DLALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 229 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F Sbjct: 230 EALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQ 289 Query: 184 RILTRSLRFL 193 ++L + F Sbjct: 290 KLLRELVAFY 299 >gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. ADP1] gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter sp. ADP1] Length = 427 Score = 274 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 115/191 (60%), Positives = 147/191 (76%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL I+ G RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 80 TAGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNH 139 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQAFE Sbjct: 140 DIALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQAFE 199 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YTQ+LS P F Sbjct: 200 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPETDQ 259 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 260 QLLRNLIAFYC 270 >gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] Length = 412 Score = 273 bits (698), Expect = 9e-72, Method: Composition-based stats. Identities = 116/188 (61%), Positives = 147/188 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P FH ++ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LTRSLRFL 193 L + F Sbjct: 246 LRELIAFY 253 >gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] Length = 427 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 115/189 (60%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 408 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 113/192 (58%), Positives = 149/192 (77%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NTGL I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL C NHWMP E+ M Sbjct: 58 TGNTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINM 117 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQA Sbjct: 118 NADIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQA 177 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +T+ L+ P FH Sbjct: 178 FEEALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPEN 237 Query: 182 RSRILTRSLRFL 193 ++L + F Sbjct: 238 DQKLLRELIAFY 249 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 177/193 (91%), Positives = 177/193 (91%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF K Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 Query: 181 RRSRILTRSLRFL 193 L F Sbjct: 181 ADQEFLQDLFVFY 193 >gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] Length = 427 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 115/189 (60%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] Length = 427 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 115/189 (60%), Positives = 148/189 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F + Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 262 LRNLIAFYC 270 >gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia rhizoxinica HKI 454] gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1) [Burkholderia rhizoxinica HKI 454] Length = 416 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 110/192 (57%), Positives = 139/192 (72%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + SP A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 67 QQSNASPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMS 126 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWK NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF Sbjct: 127 RDIALWKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAF 186 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ PSF Sbjct: 187 EEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEAD 246 Query: 183 SRILTRSLRFLC 194 ++L + F C Sbjct: 247 QKLLKSLIVFAC 258 >gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus oceani ATCC 19707] gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] Length = 412 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 116/188 (61%), Positives = 147/188 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P FH ++ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LTRSLRFL 193 L + F Sbjct: 246 LRELIAFY 253 >gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC 17616] Length = 396 Score = 270 bits (692), Expect = 5e-71, Method: Composition-based stats. Identities = 107/194 (55%), Positives = 138/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 45 VPPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 104 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 105 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 164 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 165 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 224 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 225 ADQKLLKSLIVFAC 238 >gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] Length = 411 Score = 270 bits (692), Expect = 5e-71, Method: Composition-based stats. Identities = 111/201 (55%), Positives = 141/201 (70%), Gaps = 7/201 (3%) Query: 1 MANNTGLSPIQAG-------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 AN+ ++P+ G E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NH Sbjct: 53 FANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANH 112 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 113 WMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPEC 172 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P Sbjct: 173 RQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPG 232 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 F +L + F C Sbjct: 233 FKTGTLETDQTLLRSLIVFAC 253 >gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. TJI49] Length = 403 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 108/194 (55%), Positives = 139/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VAPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus capsulatus str. Bath] gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus capsulatus str. Bath] Length = 403 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 115/192 (59%), Positives = 150/192 (78%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 TGL I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M Sbjct: 53 TGATGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINM 112 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQA Sbjct: 113 NADIALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQA 172 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F Sbjct: 173 FEEALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPEN 232 Query: 182 RSRILTRSLRFL 193 ++L + F Sbjct: 233 DQKLLRELIAFY 244 >gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] Length = 415 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 115/188 (61%), Positives = 147/188 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M D+ Sbjct: 69 GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P FH ++ Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248 Query: 186 LTRSLRFL 193 L + F Sbjct: 249 LRELIAFY 256 >gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia multivorans ATCC 17616] gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] Length = 403 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 107/194 (55%), Positives = 138/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] Length = 403 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 107/194 (55%), Positives = 138/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAIPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter vinelandii DJ] gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter vinelandii DJ] Length = 416 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 108/190 (56%), Positives = 146/190 (76%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP E+ M D Sbjct: 69 EGLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNAD 128 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQAFEE Sbjct: 129 IALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQAFEE 188 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F + Sbjct: 189 AIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPETDRQ 248 Query: 185 ILTRSLRFLC 194 +L + + C Sbjct: 249 LLRNLIAYYC 258 >gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] Length = 372 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 107/194 (55%), Positives = 138/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 21 VPPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 80 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 81 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 140 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 141 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 200 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 201 ADQKLLKSLIVFAC 214 >gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax borkumensis SK2] gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis SK2] Length = 430 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 112/189 (59%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M DL Sbjct: 84 GVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 143 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 144 ALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 203 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P F + Sbjct: 204 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPETDKAL 263 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 264 LENLIAFYC 272 >gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] Length = 412 Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 110/189 (58%), Positives = 147/189 (77%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G +R+ VDDK+++N +D+NQL+P KY WAW+KYL C NHWMP E+ M D Sbjct: 65 TGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNAD 124 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 125 IALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 184 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY + SLGLDEGE+FNMYREVPS+ KA WAL +T+ L+ P+F + Sbjct: 185 ALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEADQK 244 Query: 185 ILTRSLRFL 193 +L + F Sbjct: 245 LLRELIAFY 253 >gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] Length = 370 Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats. Identities = 110/192 (57%), Positives = 147/192 (76%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 ++ TGL + G R+ VDDKR++N R+D+NQL+P KY WAWEKYL NHWMP E+PM Sbjct: 20 SSPTGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPM 79 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQA Sbjct: 80 GRDIELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQA 139 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QY+I SL +DEGE+FNMYREVPS+ KA WAL +T++L P F Sbjct: 140 FEEALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAA 199 Query: 182 RSRILTRSLRFL 193 R+L + F Sbjct: 200 DQRLLRDLIAFY 211 >gi|330811278|ref|YP_004355740.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 415 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia thailandensis E264] Length = 377 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 109/194 (56%), Positives = 139/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 26 FAVAPNASAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 85 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 86 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 145 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 146 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 205 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 206 ADQKLLKSLIVFAC 219 >gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia vietnamiensis G4] gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis G4] Length = 403 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQAPAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. 383] gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383] Length = 403 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria AMMD] gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria MC40-6] gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD] gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MC40-6] Length = 403 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAVPAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] Length = 403 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAVPAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] Length = 403 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia AU 1054] gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia HI2424] gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU 1054] gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia HI2424] Length = 382 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 31 VPPQASAVPAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 90 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 91 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 150 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 151 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLE 210 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 211 ADQKLLKSLIVFAC 224 >gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] Length = 414 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 107/181 (59%), Positives = 133/181 (73%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F +L + F Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255 Query: 194 C 194 C Sbjct: 256 C 256 >gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei SAVP1] gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10229] gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 668] gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10247] gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1106a] gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei DM98] gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 14] gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 91] gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei B7210] gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 7894] gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 112] gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei SAVP1] gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10229] gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 668] gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106a] gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10247] gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] Length = 403 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 109/194 (56%), Positives = 139/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 FAVAPNASAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1710b] gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei 1710b] gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] Length = 376 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 109/194 (56%), Positives = 139/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 25 FAVAPNASAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 84 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 85 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 144 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 145 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 204 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 205 ADQKLLKSLIVFAC 218 >gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia MC0-3] gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia MC0-3] Length = 403 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAVPAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia J2315] gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia cenocepacia J2315] Length = 403 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 137/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VPPQASAVPAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 232 ADQKLLKSLIVFAC 245 >gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida F1] gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1] Length = 415 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 144/191 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ Sbjct: 187 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] Length = 414 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 107/181 (59%), Positives = 134/181 (74%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 136 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F +L + F Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 255 Query: 194 C 194 C Sbjct: 256 C 256 >gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis TXDOH] gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis Bt4] gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] Length = 350 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 111/194 (57%), Positives = 141/194 (72%), Gaps = 2/194 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 178 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 179 ADQKLLKSLIVFAC 192 >gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris marina MBIC11017] gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris marina MBIC11017] Length = 384 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 102/186 (54%), Positives = 137/186 (73%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+ALW Sbjct: 41 PETQPPRRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALW 100 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K+ +GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+ Sbjct: 101 KTTDGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 160 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 H +QYI+ SLGLDEGE+FN YREV I K + + + +TL+ P+F ++L Sbjct: 161 HAYQYIVESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKS 220 Query: 189 SLRFLC 194 + F C Sbjct: 221 LIAFSC 226 >gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf-5] gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Pseudomonas fluorescens Pf-5] Length = 415 Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf0-1] gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens Pf0-1] Length = 416 Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 248 ELLRNLIAYYC 258 >gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] Length = 411 Score = 264 bits (674), Expect = 6e-69, Method: Composition-based stats. Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 7/201 (3%) Query: 1 MANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NH Sbjct: 53 FANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANH 112 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 113 WMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPEC 172 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+ Sbjct: 173 RQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPA 232 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 F +L + F C Sbjct: 233 FKTGTLEADQTLLRSLIVFAC 253 >gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] Length = 411 Score = 264 bits (674), Expect = 6e-69, Method: Composition-based stats. Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 7/201 (3%) Query: 1 MANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NH Sbjct: 53 FANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANH 112 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 113 WMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPEC 172 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+ Sbjct: 173 RQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPA 232 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 F +L + F C Sbjct: 233 FKTGTLEADQTLLRSLIVFAC 253 >gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 9] gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei BCC215] gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] Length = 372 Score = 264 bits (674), Expect = 6e-69, Method: Composition-based stats. Identities = 109/194 (56%), Positives = 139/194 (71%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 21 FAVAPNASAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 80 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 81 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 140 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 141 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 200 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 201 ADQKLLKSLIVFAC 214 >gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina ymp] gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp] Length = 416 Score = 264 bits (674), Expect = 6e-69, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 146/191 (76%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 QEGLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDR 247 Query: 184 RILTRSLRFLC 194 + L + + C Sbjct: 248 QFLKNLIAYYC 258 >gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] Length = 415 Score = 264 bits (674), Expect = 6e-69, Method: Composition-based stats. Identities = 107/191 (56%), Positives = 134/191 (70%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 67 NAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSR 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 127 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F Sbjct: 187 EAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQ 246 Query: 184 RILTRSLRFLC 194 +L + F C Sbjct: 247 TLLRSLIVFAC 257 >gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri DSM 4166] Length = 415 Score = 264 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 110/190 (57%), Positives = 148/190 (77%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 68 EGLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNAD 127 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEE Sbjct: 128 IALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEE 187 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY I SLG+DEGE+FNMY EVPS+ KA+W L+YT+++S P+F + Sbjct: 188 AIHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPETDKQ 247 Query: 185 ILTRSLRFLC 194 L + + C Sbjct: 248 FLKNLIAYYC 257 >gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] Length = 366 Score = 264 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 115/193 (59%), Positives = 151/193 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TG ++ G R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 13 LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 73 MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L+ +FH Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192 Query: 181 RRSRILTRSLRFL 193 R+L + F Sbjct: 193 NDQRLLRDLIAFY 205 >gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei K96243] gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei ATCC 23344] gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei K96243] gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 23344] Length = 350 Score = 264 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 111/194 (57%), Positives = 141/194 (72%), Gaps = 2/194 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 178 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 179 ADQKLLKSLIVFAC 192 >gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus degradans 2-40] gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 423 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 109/193 (56%), Positives = 145/193 (75%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 72 MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251 Query: 181 RRSRILTRSLRFL 193 +L + F Sbjct: 252 ADQELLRNLIGFY 264 >gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Lens] gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens] Length = 367 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 115/193 (59%), Positives = 152/193 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 14 LMGATGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 73 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 74 MSADVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 133 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH Sbjct: 134 AFEEALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPE 193 Query: 181 RRSRILTRSLRFL 193 R+L + F Sbjct: 194 NDQRLLRDLIAFY 206 >gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAO1] gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2] gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PA7] gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa LESB58] gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAb1] gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa PAO1] gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7] gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa] gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa LESB58] gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] Length = 415 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 107/191 (56%), Positives = 145/191 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 QEGLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDR 246 Query: 184 RILTRSLRFLC 194 + L + + C Sbjct: 247 QFLRNLIAYYC 257 >gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri A1501] gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501] Length = 415 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 109/190 (57%), Positives = 148/190 (77%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 68 EGLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNAD 127 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEE Sbjct: 128 IALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEE 187 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F + Sbjct: 188 AIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQ 247 Query: 185 ILTRSLRFLC 194 L + + C Sbjct: 248 FLKNLIAYYC 257 >gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae Cit 7] Length = 359 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 141/191 (73%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella pertussis Tohama I] gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella parapertussis 12822] gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella bronchiseptica RB50] gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella pertussis Tohama I] gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella parapertussis] gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella bronchiseptica RB50] Length = 398 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 134/191 (70%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 L A RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 50 AASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSR 109 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 110 DIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 169 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+FH Sbjct: 170 EAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQ 229 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 230 KLLKSLIVFAC 240 >gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira multiformis ATCC 25196] gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC 25196] Length = 408 Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats. Identities = 106/181 (58%), Positives = 137/181 (75%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M D+ALWK NG Sbjct: 70 HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNG 129 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY Sbjct: 130 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQY 189 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ PSF ++L + F Sbjct: 190 IVESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFA 249 Query: 194 C 194 C Sbjct: 250 C 250 >gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 247 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 248 ELLRNLVAYYC 258 >gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia xenovorans LB400] gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans LB400] Length = 411 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 106/181 (58%), Positives = 133/181 (73%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 73 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 132 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 133 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 192 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F +L + F Sbjct: 193 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 252 Query: 194 C 194 C Sbjct: 253 C 253 >gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] Length = 416 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 144/191 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 QEGLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDR 247 Query: 184 RILTRSLRFLC 194 + L + + C Sbjct: 248 QFLRNLIAYYC 258 >gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] Length = 369 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 120/193 (62%), Positives = 151/193 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TG I+ G R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ Sbjct: 13 IVGATGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEIS 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 73 MSADVALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L SFH Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIE 192 Query: 181 RRSRILTRSLRFL 193 R+L + F Sbjct: 193 NDQRLLRDLIAFY 205 >gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Paris] gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris] Length = 367 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 115/193 (59%), Positives = 152/193 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 14 LMGATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 73 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 74 MSADVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 133 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH Sbjct: 134 AFEEALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPE 193 Query: 181 RRSRILTRSLRFL 193 R+L + F Sbjct: 194 NDQRLLRDLIAFY 206 >gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] Length = 419 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 109/189 (57%), Positives = 143/189 (75%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 73 GLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 132 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQAFEEA Sbjct: 133 ATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQAFEEA 192 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L T +LS P+F + Sbjct: 193 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLETDQEL 252 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 253 LRNLIGFYC 261 >gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] Length = 416 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 144/191 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 248 ELLRNLIAYYC 258 >gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida KT2440] gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida GB-1] gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440] gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1] gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1] Length = 416 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 144/191 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 248 ELLRNLIAYYC 258 >gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] Length = 389 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 140/192 (72%), Positives = 155/192 (80%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ TGL I G RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M Sbjct: 39 ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 99 QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 218 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 219 DQAFLRDLVAFY 230 >gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato K40] gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 415 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 140/191 (73%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 247 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 248 ELLRNLVAYYC 258 >gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella petrii DSM 12804] gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii] Length = 396 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 102/184 (55%), Positives = 135/184 (73%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 A RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ Sbjct: 55 DAAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKN 114 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H Sbjct: 115 PNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 174 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 +QYI+ SL LDE E+FN Y EVPSI AK + + + + ++ P+FH ++L + Sbjct: 175 YQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLI 234 Query: 191 RFLC 194 F C Sbjct: 235 VFAC 238 >gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida W619] gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619] Length = 416 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 144/191 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 248 ELLRNLIAYYC 258 >gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris TIE-1] gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris TIE-1] Length = 373 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 140/192 (72%), Positives = 155/192 (80%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV M Sbjct: 23 PDTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSM 82 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 83 QADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 142 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L P F Sbjct: 143 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPAT 202 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 203 DQAFLLDLIAFY 214 >gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae 642] gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 415 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 141/191 (73%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 415 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 140/191 (73%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] Length = 416 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 247 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 248 ELLRNLVAYYC 258 >gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella pneumophila str. Corby] gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila str. Corby] gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b] Length = 367 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 115/193 (59%), Positives = 152/193 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 14 LMGATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 73 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 74 MSADVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 133 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH Sbjct: 134 AFEEALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPE 193 Query: 181 RRSRILTRSLRFL 193 R+L + F Sbjct: 194 NDQRLLRDLIAFY 206 >gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae B728a] gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv. syringae B728a] gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 415 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 141/191 (73%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuG_Q212] gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuG_Q212] Length = 401 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 113/192 (58%), Positives = 149/192 (77%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M Sbjct: 50 SGATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINM 109 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQA Sbjct: 110 TADIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQA 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F Sbjct: 170 FEEALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPED 229 Query: 182 RSRILTRSLRFL 193 R+L + F Sbjct: 230 DRRLLRDLIAFY 241 >gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] Length = 355 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 111/190 (58%), Positives = 144/190 (75%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 8 EGVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNAD 67 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 LALWK +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEE Sbjct: 68 LALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEE 127 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P F Sbjct: 128 AIHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVETDKA 187 Query: 185 ILTRSLRFLC 194 +L + F C Sbjct: 188 LLENLIAFYC 197 >gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] Length = 376 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 102/194 (52%), Positives = 136/194 (70%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + T + + RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV Sbjct: 25 IKSATAAANQPSHSGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVS 84 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WK L+DDERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQ Sbjct: 85 MSRDIAQWKDSTALSDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQ 144 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 FEEA+H+H +QYI+ SLGLDE E+FN Y+E+PSI AK ++ + + TL+ P+F Sbjct: 145 GFEEAIHTHAYQYIVESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAE 204 Query: 181 RRSRILTRSLRFLC 194 +L + F C Sbjct: 205 ADQELLRSLIVFAC 218 >gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 493] gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii Dugway 5J108-111] gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 331] gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii RSA 493] gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii Dugway 5J108-111] gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 331] Length = 401 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 113/192 (58%), Positives = 149/192 (77%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M Sbjct: 50 SGATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINM 109 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQA Sbjct: 110 TADIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQA 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F Sbjct: 170 FEEALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPED 229 Query: 182 RSRILTRSLRFL 193 R+L + F Sbjct: 230 DRRLLRDLIAFY 241 >gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 317 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 140/191 (73%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DTALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas entomophila L48] gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas entomophila L48] Length = 415 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 143/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F+ Sbjct: 187 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 381 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 115/193 (59%), Positives = 152/193 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 28 LMGATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 87 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 88 MSADVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 147 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +FH Sbjct: 148 AFEEALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPE 207 Query: 181 RRSRILTRSLRFL 193 R+L + F Sbjct: 208 NDQRLLRDLIAFY 220 >gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phytofirmans PsJN] gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans PsJN] Length = 415 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 106/190 (55%), Positives = 133/190 (70%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D Sbjct: 68 AAAETAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRD 127 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEE Sbjct: 128 IALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEE 187 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F Sbjct: 188 AIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQT 247 Query: 185 ILTRSLRFLC 194 +L + F C Sbjct: 248 LLRSLIVFAC 257 >gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuK_Q154] gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuK_Q154] Length = 401 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 113/192 (58%), Positives = 149/192 (77%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M Sbjct: 50 SGATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINM 109 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQA Sbjct: 110 TADIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQA 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F Sbjct: 170 FEEALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPED 229 Query: 182 RSRILTRSLRFL 193 R+L + F Sbjct: 230 DRRLLRDLIAFY 241 >gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] Length = 377 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 138/192 (71%), Positives = 153/192 (79%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 27 AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 87 QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEA 206 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 207 DQAFLRDLVAFY 218 >gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] Length = 421 Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 106/189 (56%), Positives = 145/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDK+M+N R+D+NQL+P KY WAW+KYL C+NHWMP E+ M D+ Sbjct: 75 GLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEINMTKDV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQAFEEA Sbjct: 135 ATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY + SLG+DE E+FNMYREVPSI KA W++++TQ +S+P+F + Sbjct: 195 IHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDEADQEL 254 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 255 LRNLIGFYC 263 >gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] Length = 382 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 104/185 (56%), Positives = 134/185 (72%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 40 ASTSTGRIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWK 99 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + NGLTDDER ++KRNLGFF +++SL ANNI L YRH++NPECRQ+LLRQAFEEA+H+H Sbjct: 100 NPNGLTDDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTH 159 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +QYI+ SLGLDEGE+FNMY EV SI K + L + L++P F ++L Sbjct: 160 AYQYIVESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSL 219 Query: 190 LRFLC 194 + F C Sbjct: 220 IVFAC 224 >gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 374 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 106/180 (58%), Positives = 136/180 (75%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK GL Sbjct: 37 ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 97 TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + S+GLDEGE+FNMY EVPSI AK + L + +TL+ PSFH ++L + F Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLLRSLIVFAA 216 >gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis EO147] Length = 369 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 137/187 (73%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 204 Query: 188 RSLRFLC 194 + F C Sbjct: 205 SLIVFAC 211 >gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phymatum STM815] gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815] Length = 407 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 106/181 (58%), Positives = 134/181 (74%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M D+ALWK NG Sbjct: 69 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F ++L + F Sbjct: 189 IVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 248 Query: 194 C 194 C Sbjct: 249 C 249 >gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like [Ralstonia solanacearum CFBP2957] gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CFBP2957] Length = 402 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 104/191 (54%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + TL+ PSF Sbjct: 174 EAIHTHAYQYIVESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 234 KLLKSLIVFAC 244 >gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] Length = 362 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 107/189 (56%), Positives = 148/189 (78%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M D Sbjct: 14 TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALW+ GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 74 IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+H +QY+I SLG+DE +FNMYRE+P++ K WAL +TQ+L+ P+F R Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193 Query: 185 ILTRSLRFL 193 +L + F Sbjct: 194 LLRDLIAFY 202 >gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. B076] gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 415 Score = 260 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C+NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium 197N] gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium 197N] Length = 394 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 101/193 (52%), Positives = 135/193 (69%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + + +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 44 AAPQSAADLGNTAQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINM 103 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 104 SRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 163 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F Sbjct: 164 FEEAIHTHAYQYIVESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEA 223 Query: 182 RSRILTRSLRFLC 194 +L + F C Sbjct: 224 DQTLLKSLIVFAC 236 >gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter winogradskyi Nb-255] gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255] Length = 391 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 140/192 (72%), Positives = 154/192 (80%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + GL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 41 TDAAGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 100 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 101 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 160 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F Sbjct: 161 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 220 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 221 DQAFLRDLVAFY 232 >gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium sp. BNC1] gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1] Length = 369 Score = 260 bits (665), Expect = 7e-68, Method: Composition-based stats. Identities = 140/192 (72%), Positives = 158/192 (82%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I+ G RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 19 TDATGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 78 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 79 QADIALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 138 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L P+F Sbjct: 139 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEA 198 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 199 DQAFLRDLVAFY 210 >gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus metallidurans CH34] gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus metallidurans CH34] Length = 395 Score = 260 bits (665), Expect = 7e-68, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 47 NNPNAAAAQSTRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 106 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 107 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 166 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 167 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 226 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 227 KLLKSLIVFAC 237 >gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis C6786] Length = 369 Score = 260 bits (665), Expect = 7e-68, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 137/187 (73%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLK 204 Query: 188 RSLRFLC 194 + F C Sbjct: 205 SLIVFAC 211 >gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax benzoatilyticus JA2] Length = 385 Score = 260 bits (664), Expect = 9e-68, Method: Composition-based stats. Identities = 103/193 (53%), Positives = 134/193 (69%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ A +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 35 ASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 94 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 95 SRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 154 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I K + + + + P+F Sbjct: 155 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGTPEA 214 Query: 182 RSRILTRSLRFLC 194 +L + F C Sbjct: 215 DQTLLKSLIVFAC 227 >gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] Length = 421 Score = 260 bits (664), Expect = 9e-68, Method: Composition-based stats. Identities = 106/189 (56%), Positives = 144/189 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 75 GLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA Sbjct: 135 ATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEG +FNMYREVPS+ KA W+L +T +LS P+F ++ Sbjct: 195 IHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVETDQQL 254 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 255 LRNLVGFYC 263 >gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] Length = 410 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 62 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 121 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 122 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 181 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 182 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 241 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 242 KLLKSLIVFAC 252 >gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] Length = 328 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 106/185 (57%), Positives = 133/185 (71%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 A KRVNV +KR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 15 ASATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMARDIALWK 74 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H Sbjct: 75 DPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 134 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF ++L Sbjct: 135 AYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDRKLLKSL 194 Query: 190 LRFLC 194 + F C Sbjct: 195 IVFAC 199 >gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens DSM 3043] Length = 420 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 109/191 (57%), Positives = 149/191 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M Sbjct: 72 AAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNA 131 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE Sbjct: 132 DIALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFE 191 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P FH Sbjct: 192 EAIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPETDQ 251 Query: 184 RILTRSLRFLC 194 +L + F C Sbjct: 252 ELLRNLIAFYC 262 >gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] Length = 422 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 143/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G R+ V+DK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 74 TAGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 133 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQAFE Sbjct: 134 DVALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQAFE 193 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY + SL +DEGE+FNMYRE+PSI KA W+L++T +LS P+F Sbjct: 194 EAIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPETDQ 253 Query: 184 RILTRSLRFLC 194 +L + F Sbjct: 254 ELLRNLIGFYA 264 >gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio japonicus Ueda107] gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus Ueda107] Length = 429 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 107/193 (55%), Positives = 146/193 (75%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 78 LDPAPGLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 137 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ Sbjct: 138 MTADIALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQ 197 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 +FEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +L +P+F Sbjct: 198 SFEEAIHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPE 257 Query: 181 RRSRILTRSLRFL 193 +L + F Sbjct: 258 TDQELLRNLVAFY 270 >gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CMR15] Length = 398 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 50 NNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 109 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 110 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 169 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 170 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 229 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 230 KLLKSLIVFAC 240 >gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12D] gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 402 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 102/180 (56%), Positives = 130/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGL+E E+FN Y EV SI K + + + TL+ PSF ++L + F C Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244 >gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha H16] gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia eutropha H16] Length = 395 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 102/187 (54%), Positives = 131/187 (70%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 51 AAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 110 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H Sbjct: 111 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIH 170 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF ++L Sbjct: 171 THAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLK 230 Query: 188 RSLRFLC 194 + F C Sbjct: 231 SLIVFAC 237 >gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia solanacearum GMI1000] gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 400 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 52 NNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 111 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 112 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 171 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 172 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 231 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 232 KLLKSLIVFAC 242 >gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] Length = 402 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 234 KLLKSLIVFAC 244 >gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter turnerae T7901] gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae T7901] Length = 453 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 108/188 (57%), Positives = 143/188 (76%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 108 GLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMTADV 167 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQAFEEA Sbjct: 168 AIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEA 227 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P FH + Sbjct: 228 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPEADQEL 287 Query: 186 LTRSLRFL 193 L + F Sbjct: 288 LRNLIGFY 295 >gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha JMP134] gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134] Length = 394 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 102/191 (53%), Positives = 131/191 (68%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 46 NNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 105 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 106 DIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 165 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 166 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 225 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 226 KLLKSLIVFAC 236 >gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] Length = 402 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 234 KLLKSLIVFAC 244 >gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] Length = 373 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 137/191 (71%), Positives = 154/191 (80%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ Sbjct: 24 EQTGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQ 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 84 ADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F + Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEAD 203 Query: 183 SRILTRSLRFL 193 L + F Sbjct: 204 QSFLRDLVAFY 214 >gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] Length = 407 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 101/187 (54%), Positives = 136/187 (72%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 63 ASAAGSQERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 122 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 123 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 182 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI+ SLGLDEGE+FN Y E+ SI K + + + TL+ P+F ++L Sbjct: 183 THAYQYIVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQKLLK 242 Query: 188 RSLRFLC 194 + F C Sbjct: 243 SLIVFAC 249 >gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 394 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 106/199 (53%), Positives = 138/199 (69%), Gaps = 6/199 (3%) Query: 2 ANNTGLSPIQAG------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 T +P++A RVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWM Sbjct: 38 PQTTAPAPVEAANLSGGAALRVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWM 97 Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P E+ M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ Sbjct: 98 PQEINMNRDIALWKDPNGLTEDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQ 157 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 YLLRQAFEEA+H+H +QYI+ SLGLD+ E+FN Y E+ SI AK + + Y L++P+F Sbjct: 158 YLLRQAFEEAIHTHAYQYIVESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFK 217 Query: 176 YWNKRRRSRILTRSLRFLC 194 +L + F C Sbjct: 218 TGTLETDQTLLRSLIVFAC 236 >gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12J] gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J] Length = 402 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 102/191 (53%), Positives = 131/191 (68%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 234 KLLKSLIVFAC 244 >gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax paradoxus S110] gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110] Length = 391 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 101/179 (56%), Positives = 129/179 (72%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 55 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y EVPSI K + + + +S P+F +L + F C Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFAC 233 >gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida fusca YX] gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] Length = 354 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 140/191 (73%), Positives = 161/191 (84%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N TGL IQ+G RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ Sbjct: 5 NTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSMQ 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQAF Sbjct: 65 ADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQAF 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YT+ L +P+F Sbjct: 125 EEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEAD 184 Query: 183 SRILTRSLRFL 193 L + F Sbjct: 185 QAFLRDLVAFY 195 >gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus denitrificans ATCC 25259] Length = 376 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 98/181 (54%), Positives = 127/181 (70%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 RV DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK Sbjct: 38 TTRVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTA 97 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY Sbjct: 98 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 157 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDE E+FN Y E+ SI K ++ + + TL++P F ++L + F Sbjct: 158 IVESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFA 217 Query: 194 C 194 C Sbjct: 218 C 218 >gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ubonensis Bu] Length = 403 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 104/179 (58%), Positives = 134/179 (74%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDEGE+FN Y EV SI AK + + + TL+ P+F ++L + F C Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFAC 245 >gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] Length = 371 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 138/190 (72%), Positives = 151/190 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL I RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ Sbjct: 23 ATGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQA 82 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DLA+W+S++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFE Sbjct: 83 DLAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFE 142 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+HTFQYI SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F Sbjct: 143 EAIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQ 202 Query: 184 RILTRSLRFL 193 L + F Sbjct: 203 AFLRDLVAFY 212 >gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter hamburgensis X14] gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14] Length = 416 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 140/192 (72%), Positives = 154/192 (80%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV M Sbjct: 66 TDATGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSM 125 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 126 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 185 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L P F Sbjct: 186 FEEAVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEA 245 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 246 DQAFLRDLVAFY 257 >gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp. T7-7] Length = 387 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 99/182 (54%), Positives = 130/182 (71%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D++LWK+ N Sbjct: 48 GSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDISLWKNPN 107 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q Sbjct: 108 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 167 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SL LDE E+FN Y EVPSI AK + + + ++ P F +L + F Sbjct: 168 YIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQTGTPEADQTLLKSLIVF 227 Query: 193 LC 194 C Sbjct: 228 AC 229 >gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] Length = 415 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 108/191 (56%), Positives = 148/191 (77%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M Sbjct: 67 AAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE Sbjct: 127 DIALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P FH Sbjct: 187 EAIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPETDQ 246 Query: 184 RILTRSLRFLC 194 +L + F C Sbjct: 247 ELLRNLVAFYC 257 >gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] Length = 432 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 104/194 (53%), Positives = 142/194 (73%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP E+ Sbjct: 81 MDLAPGLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEIN 140 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQ Sbjct: 141 MTADVATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQ 200 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +LS P+F Sbjct: 201 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTE 260 Query: 181 RRSRILTRSLRFLC 194 +L + F Sbjct: 261 NDQTLLRNLIGFYA 274 >gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] Length = 358 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 131/188 (69%), Positives = 151/188 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL I+ G RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+ Sbjct: 12 GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALW+S NGLT DER IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA Sbjct: 72 ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L P F Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAF 191 Query: 186 LTRSLRFL 193 L + F Sbjct: 192 LRDLVAFY 199 >gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] Length = 444 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 105/194 (54%), Positives = 144/194 (74%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + G+ ++ G RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 93 IDPTPGIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 152 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D++LWK +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ Sbjct: 153 MTADISLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 212 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F+ Sbjct: 213 AFEEAIHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTE 272 Query: 181 RRSRILTRSLRFLC 194 +L + F Sbjct: 273 TDQELLRNLIGFYA 286 >gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix cholodnii SP-6] gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6] Length = 402 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 102/180 (56%), Positives = 127/180 (70%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK NGL Sbjct: 65 RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER +IKRNLGFF +++SL ANNI L YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + + Y + P F +L + F C Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244 >gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Cupriavidus taiwanensis LMG 19424] Length = 396 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 132/191 (69%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 48 NNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 107 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 108 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 167 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF Sbjct: 168 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 227 Query: 184 RILTRSLRFLC 194 ++L + F C Sbjct: 228 KLLKSLIVFAC 238 >gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium petroleiphilum PM1] gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum PM1] Length = 403 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 105/194 (54%), Positives = 135/194 (69%), Gaps = 1/194 (0%) Query: 2 ANNTGLSP-IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A + P AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV Sbjct: 52 AAAHAVKPSAAAGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WK NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIATWKDPNGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + P+FH Sbjct: 172 AFEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLE 231 Query: 181 RRSRILTRSLRFLC 194 +L + F C Sbjct: 232 NDRTLLKSLIVFAC 245 >gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] Length = 377 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 100/180 (55%), Positives = 129/180 (71%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M D+A WK L Sbjct: 40 GRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTAL 99 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDERL++KRNLGFF +++SL ANNIVL YRH++ PE RQYLLRQ FEEA+H+H +QYI Sbjct: 100 TDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFEEAIHTHAYQYI 159 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y+EV SI K ++ + + TL++P F ++L + F C Sbjct: 160 VESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQQLLRSLIVFAC 219 >gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella gracilis ATCC 19624] Length = 399 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 102/194 (52%), Positives = 133/194 (68%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A S +G R+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV Sbjct: 48 IAAPQSASHAPSGTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVN 107 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 108 MNRDIALWKDPNGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 167 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QYI+ SLGLDE E+F+ Y EV SI K + L + + P+FH Sbjct: 168 AFEEAIHTHAYQYIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFHTGTLE 227 Query: 181 RRSRILTRSLRFLC 194 +L + F C Sbjct: 228 TDQTLLKSLIVFAC 241 >gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] Length = 469 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 104/189 (55%), Positives = 141/189 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 123 GLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 182 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK+ GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA Sbjct: 183 ATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 242 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +T LS P+F + Sbjct: 243 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLESDQTL 302 Query: 186 LTRSLRFLC 194 L + F Sbjct: 303 LRNLIGFYA 311 >gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas eutropha C91] gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91] Length = 377 Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats. Identities = 104/181 (57%), Positives = 138/181 (76%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NG Sbjct: 39 HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNG 98 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY Sbjct: 99 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 158 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ S+GLDEGE+FN Y E+ SI K + + + TL++P+F ++L + F Sbjct: 159 IVESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFA 218 Query: 194 C 194 C Sbjct: 219 C 219 >gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 394 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 102/179 (56%), Positives = 131/179 (73%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 58 RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLD+ E+FN Y E+ SI AK + + Y L++P+F +L + F C Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFAC 236 >gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 387 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 131/189 (69%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + A +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ Sbjct: 41 AATSAPAQHRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDI 100 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA Sbjct: 101 ALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEA 160 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 +H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P F + Sbjct: 161 IHTHAYQYIVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTL 220 Query: 186 LTRSLRFLC 194 L + F C Sbjct: 221 LKSLIVFAC 229 >gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas naphthalenivorans CJ2] gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans CJ2] Length = 387 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 104/193 (53%), Positives = 132/193 (68%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A I A KRV DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M Sbjct: 37 APPLDTHEIPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNM 96 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGL+DDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 97 TRDIALWKDPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 156 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI SLGLDEGE+FN Y EV SI K + + + + +S P F Sbjct: 157 FEEAIHTHAYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLES 216 Query: 182 RSRILTRSLRFLC 194 +L + F C Sbjct: 217 DQTLLKSLIVFAC 229 >gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans C54] Length = 399 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 101/183 (55%), Positives = 133/183 (72%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ Sbjct: 59 ATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 118 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 119 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 178 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F +L + Sbjct: 179 QYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIV 238 Query: 192 FLC 194 F C Sbjct: 239 FAC 241 >gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax ferrireducens T118] gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens T118] Length = 400 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 105/193 (54%), Positives = 136/193 (70%), Gaps = 1/193 (0%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 AN G + + +RVN DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M Sbjct: 51 ANQRG-AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNM 109 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 110 TRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F Sbjct: 170 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEA 229 Query: 182 RSRILTRSLRFLC 194 +L + F C Sbjct: 230 DQTLLKSLIVFAC 242 >gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] Length = 425 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 109/194 (56%), Positives = 149/194 (76%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G RV+VD+K M+N R+D+NQL+PLKY WAW+KYL C NHWMP E+ Sbjct: 74 MDVAAGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEIN 133 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ Sbjct: 134 MTADVATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 193 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F+ + Sbjct: 194 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQE 253 Query: 181 RRSRILTRSLRFLC 194 +L + F Sbjct: 254 TDQELLRNLIGFYA 267 >gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 345 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 105/181 (58%), Positives = 136/181 (75%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK Sbjct: 5 ATARVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPK 64 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q Sbjct: 65 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 124 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGLDEGE+FNMY EVPS+ AK + + + +TL+ P F + ++L + F Sbjct: 125 YIVESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVF 184 Query: 193 L 193 Sbjct: 185 A 185 >gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas europaea ATCC 19718] gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718] Length = 382 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 105/182 (57%), Positives = 137/182 (75%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK N Sbjct: 43 DHRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPN 102 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +Q Sbjct: 103 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQ 162 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ S+GLDEGE+FN Y E+ SI K + + + TL+ PSF ++L + F Sbjct: 163 YIVESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVF 222 Query: 193 LC 194 C Sbjct: 223 AC 224 >gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas arsenicoxydans] gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Herminiimonas arsenicoxydans] Length = 395 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 99/182 (54%), Positives = 132/182 (72%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N Sbjct: 56 PTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 115 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q Sbjct: 116 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 175 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGLDEGE+FN Y E+ SI K + + + L+ P+F +L + F Sbjct: 176 YIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVF 235 Query: 193 LC 194 C Sbjct: 236 AC 237 >gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. mori str. 301020] Length = 415 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 103/191 (53%), Positives = 140/191 (73%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNKTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 RILTRSLRFLC 194 +L + + C Sbjct: 247 ELLRNLIAYYC 257 >gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] Length = 399 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 101/187 (54%), Positives = 130/187 (69%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + A RVN DKR++N +DVNQL+P KY WAWEKYLS C NHWMP E+ M D+AL Sbjct: 55 AAEGAKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIAL 114 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF+EA+H Sbjct: 115 WKDPNGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAIH 174 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI+ SLG+ E E FN Y E+ I AK ++ L + L+ PSF +L Sbjct: 175 THAYQYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLLK 234 Query: 188 RSLRFLC 194 + F C Sbjct: 235 SLIAFAC 241 >gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] Length = 396 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 100/181 (55%), Positives = 132/181 (72%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG Sbjct: 58 HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNG 117 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI AK + + + + + P+F +L + F Sbjct: 178 IVESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFA 237 Query: 194 C 194 C Sbjct: 238 C 238 >gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 374 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 100/192 (52%), Positives = 135/192 (70%), Gaps = 4/192 (2%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 TG++ + RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M Sbjct: 29 EETGMTSFE----RVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMS 84 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWK GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAF Sbjct: 85 RDIALWKDPKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAF 144 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEA+H+H +QYI+ S+GLDEGE+FNMY EVPS+ K + + + L+ P F Sbjct: 145 EEAIHTHAYQYIVESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLEND 204 Query: 183 SRILTRSLRFLC 194 ++L + F Sbjct: 205 QKLLRSLIVFAA 216 >gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] Length = 411 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 101/180 (56%), Positives = 128/180 (71%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 74 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SLGLDE E+FN Y EV SI K + L + +S P F +L + F C Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253 >gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia glumae BGR1] gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia glumae BGR1] Length = 407 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 101/181 (55%), Positives = 136/181 (75%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG Sbjct: 69 QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +++RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F + ++L + F Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248 Query: 194 C 194 C Sbjct: 249 C 249 >gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] Length = 398 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 102/181 (56%), Positives = 131/181 (72%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 60 HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 119 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 120 LTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 179 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDE E+FN Y EV SI K + + + + + P+F R+L + F Sbjct: 180 IVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFA 239 Query: 194 C 194 C Sbjct: 240 C 240 >gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter hongkongensis HLHK9] gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter hongkongensis HLHK9] Length = 357 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 105/191 (54%), Positives = 134/191 (70%), Gaps = 1/191 (0%) Query: 5 TGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 +SP +G RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ Sbjct: 9 VAVSPAGSGTGGRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQR 68 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ LWK NGLTDDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 69 DIELWKRPNGLTDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 128 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QYI+ SLGLDEGE+FN Y E+ SI AK + + + TL P+F Sbjct: 129 EAIHTHAYQYIVESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQ 188 Query: 184 RILTRSLRFLC 194 +L + F C Sbjct: 189 LLLKSLIVFAC 199 >gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] Length = 441 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 106/191 (55%), Positives = 142/191 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M Sbjct: 93 AAGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTA 152 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK+ GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE Sbjct: 153 DVATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFE 212 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W+L +T LS P+F+ Sbjct: 213 EAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTMESDQ 272 Query: 184 RILTRSLRFLC 194 +L + F Sbjct: 273 TLLRNLIGFYA 283 >gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 380 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 100/192 (52%), Positives = 135/192 (70%), Gaps = 4/192 (2%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 TG++ + RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M Sbjct: 35 EETGMTSFE----RVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMS 90 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWK GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAF Sbjct: 91 RDIALWKDPKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAF 150 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEA+H+H +QYI+ S+GLDEGE+FNMY EVPS+ K + + + L+ P F Sbjct: 151 EEAIHTHAYQYIVESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLEND 210 Query: 183 SRILTRSLRFLC 194 ++L + F Sbjct: 211 QKLLRSLIVFAA 222 >gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium sp. Marseille] gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium sp. Marseille] Length = 392 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 101/182 (55%), Positives = 134/182 (73%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N Sbjct: 53 PTRRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 112 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q Sbjct: 113 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 172 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGLDEGE+FN Y EV SI K + + + +TL+ P F ++L + F Sbjct: 173 YIVESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVF 232 Query: 193 LC 194 C Sbjct: 233 AC 234 >gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta [Verminephrobacter eiseniae EF01-2] gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae EF01-2] Length = 399 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 106/201 (52%), Positives = 141/201 (70%), Gaps = 9/201 (4%) Query: 3 NNTGLSPIQAG---------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 TG++P +G ++RVN DKR++N ++DVNQL+PLKY WAWEKYL++C NH Sbjct: 41 PATGIAPASSGTRHQAPDAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANH 100 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK+ GL+DDER +IKRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 101 WMPQEVNMTRDIALWKTPGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPEC 160 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P Sbjct: 161 RQFLLRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPH 220 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 FH + +L + F C Sbjct: 221 FHTGSAANDQTLLKSLIVFAC 241 >gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] Length = 398 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 100/180 (55%), Positives = 131/180 (72%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 61 QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 120 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 121 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F +L + F C Sbjct: 181 VESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 240 >gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 416 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 102/187 (54%), Positives = 130/187 (69%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P +R+N DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ L Sbjct: 72 EPKADPARRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIEL 131 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WKS NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H Sbjct: 132 WKSPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 191 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI SLGLDE E+FN Y EV SI K + + + L+ P F ++L Sbjct: 192 THAYQYITESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLK 251 Query: 188 RSLRFLC 194 + F C Sbjct: 252 SLIVFSC 258 >gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] Length = 357 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 132/192 (68%), Positives = 153/192 (79%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV M Sbjct: 7 TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAM 66 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA Sbjct: 67 QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 187 DQAFLRDLVAFY 198 >gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum seropedicae SmR1] gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 101/181 (55%), Positives = 131/181 (72%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ NG Sbjct: 50 TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 109 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY Sbjct: 110 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 169 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDE E+FN Y EV SI K + + + TL+ P F ++L + F Sbjct: 170 IVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFA 229 Query: 194 C 194 C Sbjct: 230 C 230 >gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] Length = 363 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 104/193 (53%), Positives = 135/193 (69%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 13 ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 73 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+FH Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192 Query: 182 RSRILTRSLRFLC 194 +L + F C Sbjct: 193 DQTLLKSLIVFAC 205 >gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] Length = 363 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 104/193 (53%), Positives = 135/193 (69%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 13 ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 73 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+FH Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192 Query: 182 RSRILTRSLRFLC 194 +L + F C Sbjct: 193 DQTLLKSLIVFAC 205 >gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] Length = 399 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 100/180 (55%), Positives = 132/180 (73%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 62 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F +L + F C Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241 >gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] Length = 381 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 101/183 (55%), Positives = 135/183 (73%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + +R+ V+DK+++N +DVNQL+P KY WAW+KYL AC NHWMP E+ M D+ALW+ Sbjct: 41 SANRRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDIALWRDP 100 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H + Sbjct: 101 NGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 160 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDEGE+FN Y EV SI K + + + TL++P F ++L + Sbjct: 161 QYIVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLETDQQLLRSLIV 220 Query: 192 FLC 194 F C Sbjct: 221 FAC 223 >gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax citrulli AAC00-1] gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1] Length = 387 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 100/181 (55%), Positives = 129/181 (71%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 49 HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 108 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 109 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 168 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDE E+FN Y EV SI K + + + + + P F +L + F Sbjct: 169 IVESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFA 228 Query: 194 C 194 C Sbjct: 229 C 229 >gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] Length = 381 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 98/183 (53%), Positives = 132/183 (72%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK Sbjct: 41 SATGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDS 100 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H + Sbjct: 101 SALTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 160 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 QYI+ SLGLDE E+FN Y+EV SI K ++ + + TL+ P F + ++L + Sbjct: 161 QYIVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIV 220 Query: 192 FLC 194 F C Sbjct: 221 FAC 223 >gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] Length = 357 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 132/192 (68%), Positives = 154/192 (80%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV M Sbjct: 7 TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAM 66 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA Sbjct: 67 QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 187 DQAFLRDLVAFY 198 >gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] Length = 374 Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats. Identities = 139/191 (72%), Positives = 154/191 (80%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ Sbjct: 25 DATGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQ 84 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQAF Sbjct: 85 ADIALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQAF 144 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L PSF K Sbjct: 145 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKETD 204 Query: 183 SRILTRSLRFL 193 L + F Sbjct: 205 QAFLRDLIAFY 215 >gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia acidovorans SPH-1] gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1] Length = 363 Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats. Identities = 105/187 (56%), Positives = 134/187 (71%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+AL Sbjct: 19 AAPSTTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIAL 78 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 79 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 138 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 +H +QYI+ SLGLDEGE+FN Y EVPSI K + + + + + P+F +L Sbjct: 139 THAYQYIVESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLK 198 Query: 188 RSLRFLC 194 + F C Sbjct: 199 SLIVFAC 205 >gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 372 Score = 254 bits (649), Expect = 5e-66, Method: Composition-based stats. Identities = 140/193 (72%), Positives = 160/193 (82%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A+ GL PIQ G R++ D+KRM+NARSDVNQLLPLKY WAWEKYL CNNHWMPTEV Sbjct: 21 IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ Sbjct: 81 MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200 Query: 181 RRSRILTRSLRFL 193 R L + F Sbjct: 201 RDQDFLRDLIAFY 213 >gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp. JS42] gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax ebreus TPSY] gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42] gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY] Length = 396 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 100/181 (55%), Positives = 130/181 (71%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 58 HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 117 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDEGE+FN Y EV SI K + + + + + P F +L + F Sbjct: 178 IVESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPESDQTLLKSLIVFA 237 Query: 194 C 194 C Sbjct: 238 C 238 >gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] Length = 383 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 98/181 (54%), Positives = 131/181 (72%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK + Sbjct: 45 TGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSA 104 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY Sbjct: 105 LTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 164 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLDE E+FN Y+EV SI K ++ + + TL+ P F + ++L + F Sbjct: 165 IVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFA 224 Query: 194 C 194 C Sbjct: 225 C 225 >gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp. JS666] gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666] Length = 406 Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats. Identities = 100/179 (55%), Positives = 127/179 (70%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 70 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y EV SI K + + + + +S P F +L + F C Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFAC 248 >gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured marine bacterium EB0_39H12] Length = 412 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 106/194 (54%), Positives = 140/194 (72%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + G ++ RV VDDK M+N R+D+NQL+P KY WAW+KYL NHWMP EV Sbjct: 61 LDAKAGEEELEGLAGRVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVN 120 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ Sbjct: 121 MTADIALWKSNDGLTEDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 180 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 FEEA+H+H +QY I SLG+DEG +FNMYRE+PS+ KA+W L+YT+ +S P F Sbjct: 181 GFEEAIHTHAYQYCIESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDE 240 Query: 181 RRSRILTRSLRFLC 194 +L + F C Sbjct: 241 TDKLLLKNLIAFYC 254 >gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] Length = 365 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 107/179 (59%), Positives = 135/179 (75%), Gaps = 1/179 (0%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M D+ALWKS + L+ Sbjct: 30 RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER +IKRNLGFF +++SL ANNIVL YRH++NPECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 89 DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDEGE+FNMY EVPSI K + L Y L++P F +L + F C Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFAC 207 >gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 360 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 130/190 (68%), Positives = 154/190 (81%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 ++GL I RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ Sbjct: 12 SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE Sbjct: 72 DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 EAVH+HTFQYI SLGLDEGELFNMYRE+PSI+ K WAL+YTQ L +P F Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQ 191 Query: 184 RILTRSLRFL 193 L + F Sbjct: 192 AFLRDLVAFY 201 >gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp. P1] Length = 358 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 128/192 (66%), Positives = 152/192 (79%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I G ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV M Sbjct: 8 PDTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAM 67 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+ Sbjct: 68 QADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQS 127 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQY+ SLGLDEGELFN YR+VPSIT K WAL+YTQ LS P F Sbjct: 128 FEEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTGTPEN 187 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 188 DRAFLRDLVAFY 199 >gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola ehrlichii MLHE-1] gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii MLHE-1] Length = 354 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 137/191 (71%), Positives = 156/191 (81%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N TGL I+AG RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM Sbjct: 5 NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW+ +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF Sbjct: 65 ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S F ++ Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGA 184 Query: 183 SRILTRSLRFL 193 L + F Sbjct: 185 QSFLRDLVAFY 195 >gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris BisB18] gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris BisB18] Length = 386 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 134/191 (70%), Positives = 153/191 (80%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ Sbjct: 37 DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW S++GLT+DER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 97 ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L P+F Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEAD 216 Query: 183 SRILTRSLRFL 193 L + F Sbjct: 217 RAFLRDLVAFY 227 >gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 360 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 136/192 (70%), Positives = 156/192 (81%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + +GL I+ +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV M Sbjct: 10 SATSGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAM 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQA Sbjct: 70 QADIALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQA 129 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YTQ L +P F Sbjct: 130 FEEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEA 189 Query: 182 RSRILTRSLRFL 193 L + F Sbjct: 190 DQAFLRDLVAFY 201 >gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] Length = 336 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 100/178 (56%), Positives = 130/178 (73%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT+ Sbjct: 1 MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 61 DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGLDE E+FN Y EV SI K + + + + + P+FH +L + F C Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 178 >gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] Length = 388 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 103/184 (55%), Positives = 142/184 (77%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + RV V K+M+NAR+DVNQL+P KY WAW+KYL C+NHWMP EV M D+ALWK Sbjct: 47 EGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQEVNMSADIALWKD 106 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA+H+H Sbjct: 107 PNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHA 166 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 +QY + SLGLD+GE+FNMY+EVPS+ KA W++++ ++ P+F + L + Sbjct: 167 YQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTGTVEADTTFLKNLI 226 Query: 191 RFLC 194 + C Sbjct: 227 AYYC 230 >gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] Length = 349 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 130/184 (70%), Positives = 150/184 (81%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + G RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWK Sbjct: 7 LDFGAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWK 66 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 S +GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+H Sbjct: 67 SPDGLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTH 126 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 TFQYI SLGLDEGELFN YREVPSI K +WAL+YT+ L P+F L Sbjct: 127 TFQYICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQEFLRDL 186 Query: 190 LRFL 193 + F Sbjct: 187 VAFY 190 >gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside diphosphate reductase, beta subunit) [Thiomonas sp. 3As] Length = 410 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 104/187 (55%), Positives = 135/187 (72%), Gaps = 4/187 (2%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP EV M D+A+WK Sbjct: 66 ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKDP 125 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H + Sbjct: 126 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 185 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY----WNKRRRSRILT 187 QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F ++R +L Sbjct: 186 QYIVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 245 Query: 188 RSLRFLC 194 + F C Sbjct: 246 SIIVFAC 252 >gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] Length = 360 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 96/182 (52%), Positives = 128/182 (70%), Gaps = 1/182 (0%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+ WK+ Sbjct: 22 GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKT-G 80 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DE ++KRNLGFF +++SL ANNIVL YR ++ PECRQ+LLRQAF+EA+H+H +Q Sbjct: 81 QLSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGLDEGE+FN Y E+ SI K + + + TL +P F ++L + F Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200 Query: 193 LC 194 C Sbjct: 201 AC 202 >gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] Length = 402 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 103/187 (55%), Positives = 135/187 (72%), Gaps = 4/187 (2%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP E+ M D+A+WK Sbjct: 58 ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKDP 117 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H + Sbjct: 118 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 177 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY----WNKRRRSRILT 187 QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F ++R +L Sbjct: 178 QYIVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 237 Query: 188 RSLRFLC 194 + F C Sbjct: 238 SIIVFAC 244 >gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca mulatta] Length = 704 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 401 AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 460 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 461 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 517 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 518 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAF 573 Query: 185 ILTRSLRF 192 + F Sbjct: 574 AAVEGIFF 581 >gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] Length = 354 Score = 243 bits (621), Expect = 9e-63, Method: Composition-based stats. Identities = 133/194 (68%), Positives = 151/194 (77%), Gaps = 4/194 (2%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 T PI G RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ Sbjct: 2 TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61 Query: 64 DLALWKS----KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 D+ALW+ K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR Sbjct: 62 DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK WAL+YT+ L+ F Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTP 181 Query: 180 RRRSRILTRSLRFL 193 + L + F Sbjct: 182 EADTDFLRDLIAFY 195 >gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium violaceum ATCC 12472] gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium violaceum ATCC 12472] Length = 360 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 99/194 (51%), Positives = 133/194 (68%), Gaps = 2/194 (1%) Query: 2 ANNTGLSPIQA-GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A + S + A G RVNV DK+++N +DVNQL+P K+ WAWEKYL+ C NHWMP EV Sbjct: 10 APSAAPSSMDAHGTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVN 69 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQ D+ WK+ LT+DE ++KRNLGFF +++SL ANNIVL YR +++PECRQ+LLRQ Sbjct: 70 MQRDIEQWKT-GQLTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQ 128 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 AF+EA+H+H +QYI+ SLGLDEGE+FN Y EV SI K + + + L +P F Sbjct: 129 AFDEAIHTHAYQYIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVE 188 Query: 181 RRSRILTRSLRFLC 194 ++L + F C Sbjct: 189 NDQKLLKSLIVFAC 202 >gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium vinosum DSM 180] Length = 280 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 102/165 (61%), Positives = 132/165 (80%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D+NQL+P KY WAW+KYL AC NHWMP E+ M DLALWK +GLT+DERL++KRNLGF Sbjct: 1 ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM Sbjct: 61 FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120 Query: 149 YREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 YREVP++ KA WAL +TQ L+ P F ++L + F Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFY 165 >gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 410 Score = 237 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 17/196 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A++ + P A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 52 ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W + L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E VHS T+ +I + D + LFN +P I KA+WAL++ Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWI------------ 217 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 218 SDKNSTFANRLVAFAA 233 >gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo sapiens] Length = 449 Score = 237 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 116 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAF 288 Query: 185 ILTRSLRF 192 + F Sbjct: 289 AAVEGIFF 296 >gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens] gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens] Length = 449 Score = 237 bits (604), Expect = 9e-61, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 116 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAF 288 Query: 185 ILTRSLRF 192 + F Sbjct: 289 AAVEGIFF 296 >gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Pongo abelii] Length = 449 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + +V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 116 AEPKTKAAAPDVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWIGDKEA----TYGERVVAF 288 Query: 185 ILTRSLRF 192 + F Sbjct: 289 AAVEGIFF 296 >gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] Length = 410 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 17/196 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ + P A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 52 ADAEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W + L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E VHS T+ +I + + + LFN +P I KA+WAL++ Sbjct: 170 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------ 217 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 218 SDKNSTFANRLVAFAA 233 >gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] Length = 398 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 126/191 (65%), Positives = 148/191 (77%), Gaps = 1/191 (0%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL I G RV+V KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ Sbjct: 50 QTGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQA 109 Query: 64 DLALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAF Sbjct: 110 DIALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAF 169 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK WAL+YT+ L+ F + Sbjct: 170 EEAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGA 229 Query: 183 SRILTRSLRFL 193 L + F Sbjct: 230 QDFLRDLVAFY 240 >gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR] gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H143] gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H88] Length = 413 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 22/201 (10%) Query: 2 ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 + P + +K + D+ +L + L PLKY W+ Y A + W Sbjct: 54 TETSARKPEEGEKKALTGVKALEADEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS T+ +I + + + LF+ +P I KA+WA+++ + Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------ 225 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 + S R + F Sbjct: 226 ------DKDSTFAQRLVAFAA 240 >gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica] Length = 493 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++ + +D+ +L + P++Y W Y A + W EV + Sbjct: 155 PTEPVTKAPNEPASPSKEDEPLLRENPRRFVIFPIEYHDIWHMYKKAEASFWTAEEVDLS 214 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W++ L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 215 KDIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIA 271 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS + +I + D E LFN +P + KA+WAL++ + + + Sbjct: 272 MENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI----GDNEATYGE 327 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 328 RVVAFAAVEGIFF 340 >gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A [Paracoccidioides brasiliensis Pb03] Length = 413 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 22/201 (10%) Query: 2 ANNTGLSPIQAGEK-----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 ++ T + P++ +K + D+ +L L PLKY W+ Y A + W Sbjct: 54 SDATPVKPVEQEKKIGSTAKDLEADEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTA 113 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS T+ +I + + + LF+ +P I KA+WA+++ + Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE------ 225 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 + S R + F Sbjct: 226 ------DKESTFAQRLVAFAA 240 >gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2 [Leptosphaeria maculans] Length = 410 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 17/190 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P A R + +L L P+KY W+ Y A + W E+ + DL Sbjct: 57 KPSTAPTIRPEEAHEPLLQENPQRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHD 116 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W + L DDER I L FFA+S+ +V N+V + PE R + Q E VH Sbjct: 117 WNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENVH 174 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S T+ +I + + + LFN +P I KA+WAL++ + S Sbjct: 175 SETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------SDKNST 222 Query: 185 ILTRSLRFLC 194 R + F Sbjct: 223 FANRLVAFAA 232 >gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980] gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980 UF-70] Length = 407 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 17/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L + L P+KY W+ Y A + W E+ + DL W N L Sbjct: 65 KPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLN 122 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I Sbjct: 123 DDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLI 182 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + ++ + LFN +P I KA+WA+++ Q + S R + F Sbjct: 183 DTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQRLVAF 230 Query: 193 LC 194 Sbjct: 231 AA 232 >gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger CBS 513.88] gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger] Length = 396 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 21/200 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 A+ P++A + + + + +L L P+KY W+ Y A + W Sbjct: 44 ADKPVEKPVEAPKVAPGIKEMEASEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 103 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 104 EIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFY 161 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ +I + + + LF+ +P I KA+WA+++ Q Sbjct: 162 GFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIAKKADWAIKWIQ------- 214 Query: 175 HYWNKRRRSRILTRSLRFLC 194 R S R + F Sbjct: 215 -----DRESTFAQRLVAFAA 229 >gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo sapiens] gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens] gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens] gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens] gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|62702173|gb|AAX93099.1| unknown [Homo sapiens] gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens] gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct] Length = 389 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 56 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 115 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 116 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 172 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 173 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAF 228 Query: 185 ILTRSLRF 192 + F Sbjct: 229 AAVEGIFF 236 >gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] Length = 255 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 22/201 (10%) Query: 2 ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 + P + +K + D+ +L + L PLKY W+ Y A + W Sbjct: 54 TETSARKPEEGEKKALTGVKALEADEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS T+ +I + + + LF+ +P I KA+WA+++ + Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------ 225 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 + S R + F Sbjct: 226 ------DKDSTFAQRLVAFAA 240 >gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus] Length = 386 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P +V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 57 EPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQH 116 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+ L DER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 117 WE---ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIH 173 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 174 SEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAF 229 Query: 185 ILTRSLRF 192 + F Sbjct: 230 AAVEGIFF 237 >gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis ER-3] gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188] Length = 413 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 22/200 (11%) Query: 3 NNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 T L P + +K + ++ +L + L PLKY W+ Y A + W Sbjct: 55 ETTPLRPEETEKKALTGMKALEAEEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAE 114 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 115 EIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCFY 172 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ +I + + + LF+ +P I KA+WA+++ + Sbjct: 173 GFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE------- 225 Query: 175 HYWNKRRRSRILTRSLRFLC 194 + S R + F Sbjct: 226 -----DKESSFAQRLVAFAA 240 >gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus] Length = 411 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 81 SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 139 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 140 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 197 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 198 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAFAAV 253 Query: 188 RSLRF 192 + F Sbjct: 254 EGIFF 258 >gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus] gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Oxidizing Conditions. A Fully Occupied Dinuclear Iron Cluster. gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Reducing Conditions. A Fully Occupied Dinuclear Iron Cluster And Bound Acetate. gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus] gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus] gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus] gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus] gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus] gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus] gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus] gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus] gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus] gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus] gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus] Length = 390 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 177 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAFAAV 232 Query: 188 RSLRF 192 + F Sbjct: 233 EGIFF 237 >gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] Length = 407 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 17/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L + L P+KY W+ Y A + W E+ + DL W + L Sbjct: 65 KPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNER--LN 122 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I Sbjct: 123 DDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLI 182 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + ++ + LFN +P I KA+WA+++ Q + S R + F Sbjct: 183 DTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQRLVAF 230 Query: 193 LC 194 Sbjct: 231 AA 232 >gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Equus caballus] Length = 425 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 10/181 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L Sbjct: 99 PAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---AL 155 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 156 KPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLL 215 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D E LFN +P + KA+WAL++ + + +R + + Sbjct: 216 IDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAFAAVEGIF 271 Query: 192 F 192 F Sbjct: 272 F 272 >gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides posadasii str. Silveira] Length = 408 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 17/197 (8%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + +P ++ + ++ +L L PLKY W+ Y A + W E+ Sbjct: 56 VKPSAPEAPKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEID 115 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DL W + L DDER I R L FFA+S+ +V N+V + PE R + Q Sbjct: 116 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQ 173 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ +I + + + LF+ +P I KA+WA+++ Q S Sbjct: 174 IMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES------ 227 Query: 178 NKRRRSRILTRSLRFLC 194 R + F Sbjct: 228 ------TFAQRLIAFAA 238 >gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] Length = 529 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 20/196 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 181 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 237 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 238 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 295 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS T+ +I + ++ + LF +P I KA+WA+++ Q Sbjct: 296 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 344 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 345 -DKDSTFAQRLVAFAA 359 >gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] Length = 401 Score = 228 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 17/197 (8%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + P +A + ++ +L L PLKY W+ Y A + W E+ Sbjct: 49 IKPSAPEEPKKALSPKELEAEEPLLQENPQRFVLFPLKYHEIWQMYKKAEASFWTAEEID 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DL W + L DDER I R L FFA+S+ +V N+V + PE R + Q Sbjct: 109 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQ 166 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ +I + + + LF +P I KA+WA+++ Q Sbjct: 167 IMMENIHSETYSLLIDTYIKEPKQRTYLFEALDNIPCIRKKADWAIRWIQ---------- 216 Query: 178 NKRRRSRILTRSLRFLC 194 + S R + F Sbjct: 217 --DKDSTFAQRLIAFAA 231 >gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Ailuropoda melanoleuca] Length = 393 Score = 228 bits (581), Expect = 4e-58, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%) Query: 8 SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P Q K + +V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 58 EPTQQETKVLAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 117 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E Sbjct: 118 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 174 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS + +I + D E LFN +P + KA+WAL++ + + +R Sbjct: 175 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVV 230 Query: 183 SRILTRSLRF 192 + + F Sbjct: 231 AFAAVEGIFF 240 >gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis] Length = 389 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 56 AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 115 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 116 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 172 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 173 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVEKKADWALRWIGDKEA----TYGERVVAF 228 Query: 185 ILTRSLRF 192 + F Sbjct: 229 AAVEGIFF 236 >gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+] gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+] Length = 409 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 17/191 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + A E + + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 61 IKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLSKDLH 120 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DDE+ I L FFA+S+ +V N+V + PE R + Q E + Sbjct: 121 DW--SNKLNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMENI 178 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 HS T+ +I + + + LFN +P I KA+WAL++ + + Sbjct: 179 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------SDKDA 226 Query: 184 RILTRSLRFLC 194 R + F Sbjct: 227 SFAQRLVAFAA 237 >gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica] gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica] Length = 403 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 9/180 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R + D+ +L L P++Y W+ Y A + W E+ + D+ W+ N L Sbjct: 71 RESEKDEPLLKENHRRFVLFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLN 128 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER I L FFA+S+ +V N+V + PE + + Q E +HS T+ +I Sbjct: 129 NDERFFISHVLAFFAASDGIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLI 188 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P I KA+WAL++ S + +R + + F Sbjct: 189 DTYIKDPKERTYLFNAIETIPCIKKKADWALKWISDEES----TFGERLIAFAAVEGIFF 244 >gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis] Length = 369 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 6/149 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P++Y W+ Y A + W EV + DL W+S L DDER Sbjct: 1 EEPLLKENPRRFVIFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERF 57 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 58 FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 117 Query: 141 DEGE---LFNMYREVPSITAKANWALQYT 166 + E LFN +P + KA+WAL + Sbjct: 118 EPSEREYLFNAIETLPCVKKKADWALNWI 146 >gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS] Length = 408 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P ++ + ++ +L L PLKY W+ Y A + W E+ + DL W Sbjct: 64 PKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDW 123 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L DDER I R L FFA+S+ +V N+V + PE R + Q E +HS Sbjct: 124 NHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHS 181 Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 T+ +I + + + LF+ +P I KA+WA+++ Q S Sbjct: 182 ETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES------------TF 229 Query: 186 LTRSLRFLC 194 R + F Sbjct: 230 AQRLIAFAA 238 >gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 389 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 17/188 (9%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++A + D+ +L L P+KY W+ Y A + W E+ + DL W Sbjct: 45 LKAKWEEAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN 104 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N LT DE+ I L FFA+S+ +V N+V + PE R + Q E +HS Sbjct: 105 --NRLTSDEQFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSE 162 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 T+ +I + + + LFN +P I KA+WA+++ Q + S Sbjct: 163 TYSLLIDTYIKEPSQRTYLFNAIETIPCIRKKADWAIRWIQ------------DKDSSFA 210 Query: 187 TRSLRFLC 194 R + F Sbjct: 211 QRLVAFAA 218 >gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] Length = 394 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R + ++ +L+ D + P+KY WE Y A + W EV + DD+ W+ L Sbjct: 67 PRKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLGDDMKHWEK---L 123 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +D ER I L FFA+S+ +V N+ + + + PE R + Q E +HS + + Sbjct: 124 SDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLL 183 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 + S D E LF+ VP I KA WA+++ + S R + Sbjct: 184 LESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWIGS-------------DSVFSERLVA 230 Query: 192 FLC 194 F Sbjct: 231 FAA 233 >gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1] Length = 399 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 17/179 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 +D+ +L L P+KY W+ Y A + W E+ + DL W N LT DE Sbjct: 64 EEDEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDE 121 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I + Sbjct: 122 QYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY 181 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D + LFN +P I KA+WA+++ Q + S R + F Sbjct: 182 IKDPAQRTYLFNAVDTIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAA 228 >gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] Length = 406 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 +P A + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 54 PTVQATPKVAPSIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLS 113 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 114 KDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIM 171 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS T+ +I + + + LF+ +P I KA+WAL++ Sbjct: 172 MENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------S 219 Query: 180 RRRSRILTRSLRFLC 194 + S R + F Sbjct: 220 DKESTFAQRLVAFAA 234 >gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo laibachii Nc14] Length = 1611 Score = 227 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 10/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++++ ++P + E + + L + L P++ W+ Y A + W E+ Sbjct: 49 LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W ++D+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 109 LVHDMNDW---LNISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS + +I + D E L +P +T KA WAL++ P + Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKWC----DPKCASF 221 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 222 AERVVAFAAVEGIFF 236 >gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus] gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus] gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus] Length = 390 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +++++ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 177 YSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAFAAV 232 Query: 188 RSLRF 192 + F Sbjct: 233 EGIFF 237 >gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa] Length = 355 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 49 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKPE 105 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 106 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 165 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WAL++ + + +R + + F Sbjct: 166 YIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAFAAVEGIFF 219 >gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora] Length = 410 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 17/186 (9%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + + +L L P+KY W+ Y A + W E+ + DL W Sbjct: 67 APTLKPEEAAEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N LTDDER + L FFA+S+ +V N+V + PE R + Q E +HS T+ Sbjct: 125 NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +I + + + LFN +P I KA+WAL++ + S R Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------TDKSSTFAQR 232 Query: 189 SLRFLC 194 + F Sbjct: 233 LVAFAA 238 >gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus norvegicus] gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus norvegicus] Length = 390 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +++++ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 177 YSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAFAAV 232 Query: 188 RSLRF 192 + F Sbjct: 233 EGIFF 237 >gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus] Length = 390 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 177 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVMAFAAV 232 Query: 188 RSLRF 192 + F Sbjct: 233 EGIFF 237 >gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium anisopliae ARSEF 23] Length = 414 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 17/190 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 67 SAAVAPGIKAEEVDEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 126 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 127 WN--NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIH 184 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S T+ +I + + + LFN +P I KA+WA+++ Q + S Sbjct: 185 SETYSLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKEST 232 Query: 185 ILTRSLRFLC 194 R + F Sbjct: 233 FAQRLVAFAA 242 >gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] Length = 400 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + ++ D + +L+ D + P+KY WE Y A + W EV + DD+ W Sbjct: 67 ELFTSPRKSMRDPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHW 126 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+D ER I L FFA+S+ +V N+ + + + PE R + Q E +HS Sbjct: 127 EK---LSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHS 183 Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 + ++ + D E LF+ VP I KA WA+++ + SS + +R + Sbjct: 184 EMYSLLLETYIKDPIEKHKLFHSIETVPCIKKKAQWAIKWIGSESS-----FPERLVAFA 238 Query: 186 LTRSLRF 192 + F Sbjct: 239 AVEGIFF 245 >gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo sapiens] Length = 423 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 G S E + +++ +L S + P++Y W+ Y A + W EV + Sbjct: 85 PQAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 144 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 145 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 201 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + +I + D + LFN +P + KA+WAL++ S + + Sbjct: 202 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGE 257 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 258 RVVAFAAVEGVFF 270 >gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 1 [Canis familiaris] Length = 394 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 12/190 (6%) Query: 8 SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P + K + + +++ +L + P++Y W+ Y A + W EV + D+ Sbjct: 59 EPAEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 118 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E Sbjct: 119 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 175 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS + +I + D E LFN +P + KA+WAL++ + + +R Sbjct: 176 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVV 231 Query: 183 SRILTRSLRF 192 + + F Sbjct: 232 AFAAVEGIFF 241 >gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera kw1407] Length = 378 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NNT +S I+A E ++ +L + L P+KY W+ Y + W E+ + Sbjct: 47 NNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDLS 101 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DDER + L FFA+S+ +V N+V + PE R + Q Sbjct: 102 KDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIM 159 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS T+ +I + D + LFN +P I KA+WAL++ Sbjct: 160 MENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWI------------S 207 Query: 180 RRRSRILTRSLRFLC 194 R S R + F Sbjct: 208 DRESTFAQRLVAFAA 222 >gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] Length = 408 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 17/196 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + T ++A + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 57 SKPTEAQVVKAKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS T+ +I + ++ + LF +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 224 -DKDSTFAQRLVAFAA 238 >gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis] gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis] Length = 386 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 53 TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L DER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ S + +R + Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRWI----SDKQATYGERVVAF 225 Query: 185 ILTRSLRF 192 + F Sbjct: 226 AAVEGIFF 233 >gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum] Length = 397 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 18/190 (9%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P + K + D+ +L L P+KY W+ Y A + W+ E+ + D+ Sbjct: 54 KPSEEDTKSEEM-DEPILTENKHRFVLFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHD 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W + L DDER I L FFA+S+ +V N+V + PE R + Q E VH Sbjct: 113 WSDR--LNDDERYFISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYGFQIMMENVH 170 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S T+ +I + D + LF+ +P I KA+WA+++ + R S Sbjct: 171 SETYSLLIDTYIKDPKQRTYLFDAIDTIPCIKKKADWAIRWIE------------DRNST 218 Query: 185 ILTRSLRFLC 194 R + F Sbjct: 219 FAQRLVAFAA 228 >gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase [Ornithorhynchus anatinus] Length = 394 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 71 RVEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 127 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 EKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 187 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E LFN +P + KA+WAL++ + + +R + + F Sbjct: 188 YIKEPKEREFLFNAIETLPCVKKKADWALRWIGDKEA----TYGERVVAFAAVEGIFF 241 >gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex] Length = 378 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 14/197 (7%) Query: 3 NNTGLSPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58 N + + EK V V D + +L + L P++Y W+ Y A + W E Sbjct: 34 ENVSPTKLTTVEKSVQVRDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEE 93 Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 V + DL W + L +ER + L FFA+S+ +V N+V + + PE R + Sbjct: 94 VDLSKDLKDW---DNLQPNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYG 150 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFH 175 Q E +HS + +I + D E LFN +P I KA WA+++ +P Sbjct: 151 FQIAMENIHSEMYSLLIETYIKDSAERTRLFNAVETMPCIAKKAEWAMKWIGNKDAP--- 207 Query: 176 YWNKRRRSRILTRSLRF 192 +++R + + F Sbjct: 208 -YSERIVAFAAVEGIFF 223 >gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 329 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + DL W+S LT DE+ Sbjct: 6 EEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 63 FISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ VP I KA WAL++ S R + F C Sbjct: 123 DSNEKNRLFHAIETVPCIAKKAEWALKWIDGSES-------------FAERIIAFAC 166 >gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 3 [Canis familiaris] Length = 381 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 12/190 (6%) Query: 8 SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P + K + + +++ +L + P++Y W+ Y A + W EV + D+ Sbjct: 59 EPAEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 118 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E Sbjct: 119 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 175 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS + +I + D E LFN +P + KA+WAL++ + + +R Sbjct: 176 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVV 231 Query: 183 SRILTRSLRF 192 + + F Sbjct: 232 AFAAVEGIFF 241 >gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium acridum CQMa 102] Length = 411 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 17/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L L P+KY W+ Y A + W E+ + DL W N L Sbjct: 72 KAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLN 129 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I Sbjct: 130 DDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLI 189 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + + + LFN +P I KA+WA+++ Q + S R + F Sbjct: 190 DTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKESTFAQRLVAF 237 Query: 193 LC 194 Sbjct: 238 AA 239 >gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa] gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] Length = 410 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 17/186 (9%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + ++ +L L P+KY W+ Y A + W E+ + DL W Sbjct: 67 APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+ Sbjct: 125 NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +I + + + LFN +P I KA+WAL++ + S R Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------TDKSSTFAQR 232 Query: 189 SLRFLC 194 + F Sbjct: 233 LVAFAA 238 >gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] Length = 389 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L + Sbjct: 66 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKSE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WAL++ ++ + +R + + F Sbjct: 183 YIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKAA----TYGERVVAFAAVEGIFF 236 >gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] Length = 419 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 9/180 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L L P+KY W+ Y A + W E+ + D+ WK N +T Sbjct: 88 KAQEKDEPLLVENKRRFVLFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMT 145 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D+ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I Sbjct: 146 DNERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 205 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S D E LFN +P I KA WAL++ + + +R + + F Sbjct: 206 DSYIKDPKEADFLFNAIENIPCIKKKAEWALRWI----ADDEALFAERLVAFAAVEGIFF 261 >gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 362 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 10/189 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S A E ++D++ +L + P++Y W+ Y A + W EV + DL Sbjct: 28 MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E V Sbjct: 88 HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 HS + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWIEDRES----TFGERVVA 200 Query: 184 RILTRSLRF 192 + F Sbjct: 201 FAAVEGIFF 209 >gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] Length = 406 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 17/195 (8%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 +P A + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 54 PAVQEAPKVAPGIKEMEVNEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLS 113 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DDER + R L FFA+S+ +V N+V + PE R + Q Sbjct: 114 KDLHDWN--NRLNDDERYFVSRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIM 171 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS T+ +I + + + LF+ +P I KA+WAL++ Sbjct: 172 MENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------S 219 Query: 180 RRRSRILTRSLRFLC 194 + S R + F Sbjct: 220 DKESTFAQRLVAFAA 234 >gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001] Length = 413 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 17/190 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 66 KPVVVPGIKEQEMDEPLLQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 125 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W +K + +DE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 126 WNNK--INEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 183 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S T+ +I + + + LFN +P I KA+WAL++ +S Sbjct: 184 SETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALKWI------------SDEKSS 231 Query: 185 ILTRSLRFLC 194 R + F Sbjct: 232 FAQRLVAFAA 241 >gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi] Length = 390 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 11/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 +T LS ++ E+ + + +L + P++Y W+ Y A + W EV + Sbjct: 53 PSTALSEVE-PEQPFDPSIEPLLMDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLS 111 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W + L ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 112 KDMKDW---DSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIA 168 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + +I + D E LFN +P + KA+WA+ + + + + + Sbjct: 169 MENVHSEMYSLLIDTYIRDPKERDFLFNAIETLPCVKRKADWAMNWISSKKA----NYGE 224 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 225 RIVAFAAVEGIFF 237 >gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase isoform 1 [Gallus gallus] Length = 392 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 10/194 (5%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + T ++ + + +++ +L + P++Y W+ Y A + W EV + Sbjct: 53 SEGTPVTALCPPQVARGAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDL 112 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W+S L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 113 SKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS + +I + D E LFN +P + KA+WA+++ + Sbjct: 170 AMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWI----GDKKATYG 225 Query: 179 KRRRSRILTRSLRF 192 +R + + F Sbjct: 226 ERVVAFAAVEGIFF 239 >gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] Length = 409 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 18/187 (9%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + + +L + L P+KY W+ Y A + W E+ + DL W + Sbjct: 61 APTIKEEEAHEPLLQENPNRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR 120 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DDER I L FFA+S+ +V N+V + PE R + Q E +HS T Sbjct: 121 --LNDDERFFISHVLAFFAASDGIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSET 178 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + + + LFN +P I KA+WAL++ + S Sbjct: 179 YSLLIDTYISEPRQRTYLFNAIDNIPCIRKKADWALKWI------------SDKNSTFAN 226 Query: 188 RSLRFLC 194 R + F Sbjct: 227 RLVAFAA 233 >gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus oryzae RIB40] gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae] gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] Length = 405 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 13/198 (6%) Query: 2 ANNTGLSPIQAGEK----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 T P + K + ++ +L L P+KY W+ Y A + W Sbjct: 50 TKTTVEKPTEVSSKIASIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L DDER I R L FFA+S+ +V N++ + PE R + Sbjct: 110 EIDLSKDLHDWH--NRLNDDERFFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +H+ T+ +I + + + LF+ +P I KA+WA+++ Q S Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES--- 224 Query: 175 HYWNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 225 -TFGQRLVAFAAVEGIFF 241 >gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] Length = 401 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N L +DER Sbjct: 71 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERY 128 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I + Sbjct: 129 FISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIK 188 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + + LF+ +P I KA+WA+++ Q S + +R + + F Sbjct: 189 EPKQRTYLFDAIDNIPCIAKKADWAIKWIQDQES----TFGQRLVAFAAVEGIFF 239 >gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] Length = 409 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 17/190 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A + + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 62 SAAVAPTIKADEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 121 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W +K + DDE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 122 WNNK--INDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 179 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S T+ +I + + + LFN +P+I KA+WAL++ ++S Sbjct: 180 SETYSLLIDTYIKEPAQRTHLFNAIDTIPAIRKKADWALRWI------------TDQKST 227 Query: 185 ILTRSLRFLC 194 R + F Sbjct: 228 FAQRLVAFAA 237 >gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] Length = 408 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 20/196 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS T+ +I + ++ + LF +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 224 -DKDSTFAQRLVAFAA 238 >gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 10/184 (5%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S Sbjct: 3 TKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES- 61 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L +ER I L FFA+S+ +V N+V + + E R + Q E +HS + Sbjct: 62 --LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMY 119 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 120 SLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEA----TYGERVVAFAAVE 175 Query: 189 SLRF 192 + F Sbjct: 176 GIFF 179 >gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] Length = 418 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + P+KY W+ Y A + W E+ + D+ W N L D+ER Sbjct: 90 EEPLLMENTRRFVMFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNERY 147 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 148 FISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIK 207 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P I KA+WAL++ + R + F Sbjct: 208 DPKEADFLFNAIENIPCIKKKADWALRWIN------------DDDALFGERLVAFAA 252 >gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus Af293] gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus Af293] gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus A1163] Length = 405 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N L DDER Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I + Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + + LF+ +P I KA WA+++ + S R + F Sbjct: 190 EPKQRTYLFDAIDTIPCIRKKAQWAMRWI------------SDKESTFAQRLVAFAA 234 >gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] Length = 414 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 17/192 (8%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 G + A + D+ +L L P+KY W+ Y A + W E+ + D Sbjct: 64 EGDKAVVAPGIKDFEADEPLLRENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKD 123 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W +K + DDE+ I L FFA+S+ +V N+V + PE R + Q E Sbjct: 124 LHDWNNK--INDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIMME 181 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 +HS T+ +I + + + LFN +P I KA+WAL + + Sbjct: 182 NIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALTWI------------TDK 229 Query: 182 RSRILTRSLRFL 193 +S TR + F Sbjct: 230 KSTFATRLVAFA 241 >gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans CBS 112818] Length = 408 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 20/196 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS T+ +I + ++ + LF +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 224 -DKNSTFSQRLVAFAA 238 >gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Meleagris gallopavo] Length = 353 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 13/188 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 SP + G + + ++ +L + P+++ W+ Y A + W EV + DL Sbjct: 23 SPSENG---LKLHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPH 79 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 80 W---NKLKPDEKYFISHILAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVH 136 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 137 SEMYSLLIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWIEDRHS----TFGERVVAF 192 Query: 185 ILTRSLRF 192 + F Sbjct: 193 AAVEGIFF 200 >gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] Length = 417 Score = 223 bits (570), Expect = 8e-57, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 9/186 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + E + D+ +L + L P+KY W+ Y A + W E+ + D+ W Sbjct: 79 VHRHELKAMEKDEPLLMENTRRFVLFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN 138 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L D+ER I R L FFA+S+ +V N+V + PE + + Q E +HS Sbjct: 139 --NRLNDNERFFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSE 196 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 T+ +I S D E LFN +P I KA+WAL++ S + +R + Sbjct: 197 TYSLLIDSYIKDPKEADFLFNAIDNIPCIRKKADWALRWI----SDDDALFGERLVAFAA 252 Query: 187 TRSLRF 192 + F Sbjct: 253 VEGIFF 258 >gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus siliculosus] Length = 504 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + + A L P+K+ W+ Y A + W EV + D W+ LT +E+ Sbjct: 181 EPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWE---ALTGNEQHF 237 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + + PE R + Q E++H + ++ + D Sbjct: 238 ISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKD 297 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN Y ++P + KA+WA+++ + + R + F Sbjct: 298 KQERDNLFNAYNDIPCVKQKADWAMRWIGS-------------DATFAERLVAFAA 340 >gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] Length = 408 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 20/196 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS T+ +I + ++ + LF +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 224 -DKNSTFAQRLVAFAA 238 >gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 400 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 17/176 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+KY W+ Y A + W E+ + DL W N L DDER Sbjct: 69 EPLLQENPHRFVMFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERYF 126 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I + + Sbjct: 127 ISHVLAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKE 186 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + LF+ +P IT KANWA+++ R S +R + F Sbjct: 187 PKQRTYLFDAIDTIPCITKKANWAIRWIN------------DRESTFASRLVAFAA 230 >gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8] [Aspergillus nidulans FGSC A4] Length = 406 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 21/200 (10%) Query: 2 ANNTGLSPIQAGEKRVNV----DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 P++ + ++V ++ +L L P+KY W+ Y A + W Sbjct: 50 TKPATEKPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L +DER I R L FFA+S+ +V N++ + PE R + Sbjct: 110 EIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +H+ T+ +I + + + LF+ +P I KA+WA+++ Q Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQ------- 220 Query: 175 HYWNKRRRSRILTRSLRFLC 194 + S R + F Sbjct: 221 -----DKESTFAQRLVAFAA 235 >gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 353 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 A E + ++ +L + P+++ W+ Y A + W EV + DL W Sbjct: 23 SAAENGLKPHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 80 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 81 -NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEM 139 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 140 YSLLIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWIEDRES----TFGERVVAFAAV 195 Query: 188 RSLRF 192 + F Sbjct: 196 EGIFF 200 >gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase isoform 2 [Gallus gallus] Length = 384 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 13/198 (6%) Query: 1 MANNTGLSPIQAGEKRV---NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 +A+ T Q E +++ +L + P++Y W+ Y A + W Sbjct: 41 LASKTARKIFQESEGTPVARGAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAE 100 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W+S L +E+ I L FFA+S+ +V N+V + + E R + Sbjct: 101 EVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFY 157 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS + +I + D E LFN +P + KA+WA+++ Sbjct: 158 GFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWI----GDKK 213 Query: 175 HYWNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 214 ATYGERVVAFAAVEGIFF 231 >gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] Length = 405 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N L DDER Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I + Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + + LF+ +P I KA WA+++ + S R + F Sbjct: 190 EPKQRTYLFDAIDTIPCIAKKAQWAMRWI------------SDKESTFAQRLVAFAA 234 >gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans] Length = 406 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 21/200 (10%) Query: 2 ANNTGLSPIQAGEKRVNV----DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 P++ + ++V ++ +L L P+KY W+ Y A + W Sbjct: 50 TKPATEKPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L +DER I R L FFA+S+ +V N++ + PE R + Sbjct: 110 EIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +H+ T+ +I + + + LF+ +P I KA+WA+++ Q Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQ------- 220 Query: 175 HYWNKRRRSRILTRSLRFLC 194 + S R + F Sbjct: 221 -----DKESTFAQRLVAFAA 235 >gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767] gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii] Length = 426 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + L P+KY W+ Y A + W E+ + D W K L ++ER Sbjct: 101 EEPLLIENTRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNEK--LNNNERY 158 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 159 FISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYIK 218 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P I KA+WAL++ + R + F Sbjct: 219 DPKEADFLFNAIDNIPCIKKKADWALRWIN------------DDDALFGERLVAFAA 263 >gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 1 [Anolis carolinensis] Length = 394 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 71 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WA+++ + + +R + + F Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRWIGDKHA----TYGERVVAFAAVEGIFF 241 >gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa] gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa] Length = 329 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE+ Sbjct: 6 EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWEN---LTPDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 63 FISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ VP + KA WAL++ S R + F C Sbjct: 123 DSEEKNRLFHAIETVPCVAKKARWALRWIDGSES-------------FAERLVAFAC 166 >gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa] gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa] Length = 329 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE+ Sbjct: 6 EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWEN---LTPDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V NI + + E R + Q E +HS + ++ + Sbjct: 63 FISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ VP + KA WAL++ S R + F C Sbjct: 123 DSTEKNRLFHAIETVPCVAKKAEWALRWIDGGES-------------FAERLIAFAC 166 >gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 414 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 17/193 (8%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T L GE + ++ +L L P++Y W+ Y A + W E+ + D Sbjct: 66 TLLRRKFVGEVDLPESEEPLLKESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKD 125 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W +K L D+ER I L FFA+S+ +V N++ + E R + Q E Sbjct: 126 LHDWNNK--LNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMME 183 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 +HS T+ +I + D + LF+ +P I KA+WAL + + Sbjct: 184 NIHSETYSLLIDTYIKDPAQRDYLFDAVDTIPCIKKKADWALTWI------------SDQ 231 Query: 182 RSRILTRSLRFLC 194 +S R + F Sbjct: 232 KSTFAERLVAFAA 244 >gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis] gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis] Length = 386 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K ++D+ +L + P++Y W+ Y A + W EV + DL Sbjct: 53 TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL + + + +R + Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHWIGDKQA----TFGERVVAF 225 Query: 185 ILTRSLRF 192 + F Sbjct: 226 AAVEGIFF 233 >gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small subunit gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster] gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct] gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct] Length = 393 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + LFN +P++ KA+WAL + + S+ + +R + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISSKSA----NFGERIIAFAA 234 Query: 187 TRSLRF 192 + F Sbjct: 235 VEGIFF 240 >gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 2 [Anolis carolinensis] Length = 390 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 67 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WA+++ + + +R + + F Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRWIGDKHA----TYGERVVAFAAVEGIFF 237 >gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba] gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba] Length = 393 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + LFN +P++ KA+WAL + + S+ + +R + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISSKSA----NFGERIIAFAA 234 Query: 187 TRSLRF 192 + F Sbjct: 235 VEGIFF 240 >gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + D+ +L + P++Y W+ Y A + W EV + DL W+S Sbjct: 56 SKAPKDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L +E+ I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LFN +P + KA+WAL++ S + +R + Sbjct: 173 YSLLIDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI----SDKQATYGERVVAFAAV 228 Query: 188 RSLRF 192 + F Sbjct: 229 EGIFF 233 >gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis] gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + D+ +L + P++Y W+ Y A + W EV + DL W+S Sbjct: 56 SKAPKDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L +E+ I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LFN +P + KA+WAL++ + + +R + Sbjct: 173 YSLLIDTYIKDPKEREYLFNAIETLPCVKKKADWALRWIGDKQA----TYGERVVAFAAV 228 Query: 188 RSLRF 192 + F Sbjct: 229 EGIFF 233 >gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] Length = 405 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 13/192 (6%) Query: 8 SPIQAGEK----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 P +A K + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 55 KPTEASTKIAAIKELEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 114 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 115 DLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMI 172 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E +HS T+ +I + + + LF+ +P I KA WA+++ S + +R Sbjct: 173 ENIHSETYSLLIDTYIKEPKQRAYLFDAIDTIPCINKKAQWAMRWISDKES----SFGQR 228 Query: 181 RRSRILTRSLRF 192 + + F Sbjct: 229 LVAFAAVEGIFF 240 >gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia] gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans] gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia] gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans] Length = 393 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + LFN +P++ KA+WAL + + S+ + +R + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISSKSA----NFGERIIAFAA 234 Query: 187 TRSLRF 192 + F Sbjct: 235 VEGIFF 240 >gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae] gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae] Length = 393 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSATPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + LFN +P++ KA+WAL + + S+ + +R + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALAWISSKSA----NFGERIIAFAA 234 Query: 187 TRSLRF 192 + F Sbjct: 235 VEGIFF 240 >gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Ailuropoda melanoleuca] Length = 387 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 57 DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 114 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 115 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 173 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 174 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS----TFGERVVAFAAV 229 Query: 188 RSLRF 192 + F Sbjct: 230 EGIFF 234 >gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis] gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis] Length = 394 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 63 MEKIAAQFDPTVEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA 122 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 123 ---RLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 179 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + LFN +P++ KA+WAL + + ++ + +R + Sbjct: 180 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISSKAA----NFGERIIAFAA 235 Query: 187 TRSLRF 192 + F Sbjct: 236 VEGIFF 241 >gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895] gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895] Length = 422 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 17/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ +L L P+KY W+ Y A + W E+ + D+ W N +T Sbjct: 91 KEQEKNEPLLMENKRRFVLFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMT 148 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I Sbjct: 149 ENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 208 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P I KA WA+++ Q + + R + F Sbjct: 209 DTYIKDPKEADHLFNAIETIPEIKEKAEWAIRWIQ------------DKDALFAERLVAF 256 Query: 193 LC 194 Sbjct: 257 AA 258 >gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis] gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis] Length = 393 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 10/192 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 T S + + + +L + P++Y W+ Y A + W EV + Sbjct: 56 KTEQSIMDKIAAPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSK 115 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W LTD+ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 116 DLTDWA---RLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAM 172 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E VHS + +I + D E LFN +P++ KA+WAL + + ++ + +R Sbjct: 173 ENVHSEMYSVLIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWISSKAA----NFGER 228 Query: 181 RRSRILTRSLRF 192 + + F Sbjct: 229 IIAFAAVEGIFF 240 >gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 3 [Anolis carolinensis] Length = 391 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 10/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + P++Y W+ Y A + W EV + DL W+S L DE+ Sbjct: 71 DEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPDEKY 127 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 FISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 187 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WA+++ + + +R + + F Sbjct: 188 DPKEREYLFNAIETLPCVKRKADWAMRWIGDKHA----TYGERVVAFAAVEGIFF 238 >gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis] Length = 197 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 19/179 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V ++ +L D + P+KY WE Y A + W EV + D W+ LT DE Sbjct: 8 VAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWE---ALTADE 64 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 65 RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 124 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ +P + KA WAL++ S R + F C Sbjct: 125 IKDPDEKNRLFHAIETIPCVAKKAEWALRWIDGGKS-------------FAQRVVAFAC 170 >gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni] gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni] Length = 395 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 64 MDKKVAHFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA 123 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 124 ---RLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 180 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D E LFN +P++ KA+WAL + + ++ + +R + Sbjct: 181 MYSILIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWISSKAA----NFGERIIAFAA 236 Query: 187 TRSLRF 192 + F Sbjct: 237 VEGIFF 242 >gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] Length = 391 Score = 221 bits (563), Expect = 5e-56, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++AG+ + + +L + P++Y W+ Y A + W EV + DL W+ Sbjct: 60 LKAGQAPFDPSIEPLLKDNPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWE 119 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L E+ I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 120 K---LKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 176 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D E LFN +P + KA+WA+ + + + + +R + Sbjct: 177 MYSLLIDTYIRDPKEREYLFNAIETLPCVKKKADWAMNWISSKHA----NFGERVVAFAA 232 Query: 187 TRSLRF 192 + F Sbjct: 233 VEGIFF 238 >gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] Length = 347 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 19/188 (10%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + G + ++ +L + P++Y WE Y A + W EV + D W+ Sbjct: 12 VDDGSRIKAPKEEPILADNPQRFCMFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAKHWE 71 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 S LTD+E+ + L FFA+S+ +V N+ + + + PE R + Q E +HS Sbjct: 72 S---LTDNEKHFVSHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSE 128 Query: 130 TFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + ++ + D + +LFN +P + KA+WAL++ + Sbjct: 129 MYSLLLETYIKDNEVKAKLFNAIETIPCVAKKADWALRWIDS-------------SQSFA 175 Query: 187 TRSLRFLC 194 R + F C Sbjct: 176 ERIVAFAC 183 >gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia guttata] Length = 390 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 16/201 (7%) Query: 1 MANNTGLSPIQAGEK------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 +A+ T Q G+ R +++ +L + P++Y W+ Y A + W Sbjct: 44 LASKTARRIFQEGDGNSVSVERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFW 103 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 EV + DL W+S L +E+ I L FFA+S+ +V N+V + + E R Sbjct: 104 TAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 160 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I + D E LFN +P + KA+WA+ + Sbjct: 161 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAMCWI----G 216 Query: 172 PSFHYWNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 217 DKKATYGERVVAFAAVEGIFF 237 >gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 402 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 13/194 (6%) Query: 5 TGLSPIQAGEKRV---NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T + P++ +++ N +D+ +L + P+KY W+ Y A + W EV + Sbjct: 63 TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA W S L DDER I L FFA+S+ +V N+V + + E R + Q Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS + +I + D E LFN +P + KA WAL + ++ + Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWINADNA----TYG 235 Query: 179 KRRRSRILTRSLRF 192 +R + + F Sbjct: 236 ERVVAFAAVEGIFF 249 >gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] Length = 422 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 9/189 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L GE + ++ +L L P++Y W+ Y A + W E+ + DL Sbjct: 71 LRKKFVGEVDLPESEEPLLKESKRRFVLFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLH 130 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N + D+ER I L FFA+S+ +V N++ + E R + Q E + Sbjct: 131 DWN--NRMNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMMENI 188 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 HS T+ +I S D + LF+ +P I KA WAL++ S + +R + Sbjct: 189 HSETYSLLIDSYIKDPAQREYLFDAIETIPCIKRKAEWALKWISDQES----TFAERLVA 244 Query: 184 RILTRSLRF 192 + F Sbjct: 245 FAAVEGIFF 253 >gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97] Length = 317 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 20/196 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPRLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS T+ +I + ++ + LF +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KRRRSRILTRSLRFLC 194 + S R + F Sbjct: 224 -DKNSTFSQRLVAFAA 238 >gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] Length = 386 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL Sbjct: 53 SEGQSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W + L D+ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 W---DSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL + ++ + +R + Sbjct: 170 SEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIGDKNA----RYGERVVAF 225 Query: 185 ILTRSLRF 192 + F Sbjct: 226 AAVEGIFF 233 >gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis] Length = 390 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 10/182 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +R +++ +L + P++Y W+ Y A + W EV + DL W+S Sbjct: 63 AERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES--- 119 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ I L FFA+S+ +V N+V + + E R + Q E +HS + Sbjct: 120 LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSL 179 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 +I + D E LFN +P + KA+WA+ + + +R + + Sbjct: 180 LIDTYIKDSQEREFLFNAIETLPCVKKKADWAMCWI----GDKKATYGERVVAFAAVEGI 235 Query: 191 RF 192 F Sbjct: 236 FF 237 >gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC 30864] Length = 352 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 19/193 (9%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T + G ++ + D+ +L L P++Y W+ Y A + W EV + D Sbjct: 17 TAEEALVNGLSKLEL-DEPLLKPNPHRFVLFPIQYHDVWKMYKKAEASFWTAEEVDLSKD 75 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W + L +ER I L FFA+S+ +V N++L + PE R + Q E Sbjct: 76 LNDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIE 132 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 +HS + +I D E LFN +P + KA WAL++ R Sbjct: 133 NIHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALRWI------------SDR 180 Query: 182 RSRILTRSLRFLC 194 RS R + F Sbjct: 181 RSTFAHRLIAFAA 193 >gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi] gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi] Length = 393 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + D+ W Sbjct: 62 MEKVAAPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMTDW- 120 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 121 --VRLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + LFN +P++ KA+WAL + + ++ + +R + Sbjct: 179 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISSKAA----NFGERIIAFAA 234 Query: 187 TRSLRF 192 + F Sbjct: 235 VEGIFF 240 >gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio] gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Danio rerio] gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase protein R2 class I; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio] gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio] gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio] Length = 386 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL Sbjct: 53 SEGQSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W + L D+ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 W---DSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL + ++ + +R + Sbjct: 170 SEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIGDKNA----RYGERVVAF 225 Query: 185 ILTRSLRF 192 + F Sbjct: 226 AAVEGIFF 233 >gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta] gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta] Length = 393 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MERSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + LFN +P++ KA+WAL + + S+ + +R + Sbjct: 179 MYSVLIDTYIRDPNQREYLFNAIETMPAVKRKADWALSWISSKSA----NFGERIIAFAA 234 Query: 187 TRSLRF 192 + F Sbjct: 235 VEGIFF 240 >gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans morsitans] Length = 396 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + T + + + + +L + P++Y W+ Y A + W EV + Sbjct: 58 DATVTTASDNSVAKFDPSIEPLLKENPKRFVIFPIQYPEIWKMYKKAEASFWTAEEVDLS 117 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W N L+D ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 118 KDMDDW---NRLSDGERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIA 174 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + +I + +DE E LFN +P + KA WAL + + S+ + + Sbjct: 175 MENVHSEMYSLLIETYIMDEKEREYLFNAIETMPLVKKKAEWALAWISSHSA----NFGE 230 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 231 RIIAFAAVEGIFF 243 >gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia angusta DL-1] Length = 408 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 9/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY W+ Y A + W E+ + DL W N L D+ER Sbjct: 81 DEPLLVENKRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNERY 138 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 139 FVSRVLAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYVK 198 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P I KA WA+++ + + +R + + F Sbjct: 199 DPKEAEFLFNAIETIPCIKEKAEWAMRWINDEEA----LFAERLVAFAAVEGIFF 249 >gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera] Length = 329 Score = 220 bits (561), Expect = 9e-56, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D W++ LT DE+ Sbjct: 6 EEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 63 FISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ +P + KA WAL++ R L F C Sbjct: 123 DPKEKNRLFHAIDTIPCVAKKAQWALRWIDGSE-------------TFAERLLAFAC 166 >gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens] Length = 331 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 19/178 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + +L + + P+KY WE Y A + W EV + D W++ LTDDER Sbjct: 6 QKEPILVENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDER 62 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 63 HFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 122 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D+ E LFN +P + KA+WAL++ + R L F C Sbjct: 123 KDQAEKSRLFNAIETIPCVARKADWALKWIDSA-------------GSFAERILAFAC 167 >gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] Length = 335 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + ++ +L D L P+KY W Y A + W E+ + DL W SK L D+ Sbjct: 3 QIIEEPILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSSK--LNDN 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 61 ERHFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDT 120 Query: 138 LGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D + +LFN +P I KA+WAL++ S + +R + + F Sbjct: 121 YIKDNEQKSKLFNAIDTIPCIKKKADWALKWINNSDS-----FAERLVAFAAVEGIFF 173 >gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] Length = 376 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 10/180 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L + P+ Y W Y A + W EV + DL W +GL Sbjct: 51 ELEKQDEPLLRENPRRFVMFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLK 107 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER I L FFA+S+ +V N+V + + E R + Q E VHS + +I Sbjct: 108 PEERHFISHILAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLI 167 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P I KA+WAL + S+ + +R + + F Sbjct: 168 DTYIKDPSERDRLFNAVETMPCIKRKADWALNWISNRSA----TFGERIVAFAAVEGIFF 223 >gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens] Length = 325 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 19/179 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++ + +L + P+KY WE Y A + W EV + DL W+ LTD+E Sbjct: 1 MEQEPILAENPGRFCMFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWE---ALTDNE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 58 RHFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D+ E LFN +P +T KA WAL++ + R L F C Sbjct: 118 IKDQSEKHRLFNAIETIPCVTRKAEWALKWIDSS-------------GSFAERILAFAC 163 >gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] Length = 347 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 103/182 (56%), Positives = 136/182 (74%), Gaps = 2/182 (1%) Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G +R+ V+DKR++N DVNQL+P+KY WAWE YL+ C NHWMP+E+PM D+ LW+S Sbjct: 8 GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F Sbjct: 67 DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 YI+ SLGLDEGE+FNMYRE+P++ K + ++ T+ + P F L + Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIG 186 Query: 192 FL 193 + Sbjct: 187 YY 188 >gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris CBS 7435] Length = 400 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L PLKY W+ Y A + W E+ + DL W N + D+E+ Sbjct: 75 DEPLLVENKRRFVLFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEKF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P I KA+WA+++ + R + F Sbjct: 193 DPKESEFLFNAIETIPCIKEKADWAMRWI------------SDDDALFAERLVAFAA 237 >gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 361 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 10/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M N + A + + +L + P+ Y W Y + W EV Sbjct: 18 MTNKNFFESVSAYRANFDATIEPLLKDNPRRFVIFPIIYDDIWAMYKKQEASFWNVEEVN 77 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 ++ DL W LTDDER I L FFA+S+ +V N+V + + E R + Q Sbjct: 78 LKSDLEDW---MKLTDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 134 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS + +I + D E LFN +P + KA+WAL++ S S + Sbjct: 135 IMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIETMPCVKKKADWALKWI----SDSKATF 190 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 191 GERLVAFAAVEGIFF 205 >gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis] gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 378 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 10/181 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W+ L Sbjct: 52 KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWE---AL 108 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D E LFN +P + KA WAL++ +P + +R + + Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWISDREAP----FCERIVAFAAVEGIF 224 Query: 192 F 192 F Sbjct: 225 F 225 >gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding [Arabidopsis thaliana] gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C; AltName: Full=Ribonucleoside-diphosphate reductase TSO2 subunit; AltName: Full=Ribonucleotide reductase small subunit C gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana] gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] Length = 332 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 18/180 (10%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P+ Y WE Y A + W EV + D W+ N L D Sbjct: 3 SMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDG 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 ERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDT 120 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF +P + KA WA+++ R + F C Sbjct: 121 YIKDNKERDHLFRAIETIPCVAKKAQWAMKWI-------------DGSQTFAERIIAFAC 167 >gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53 inducible) [Ornithorhynchus anatinus] Length = 401 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 13/188 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P + G + ++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 71 EPTENG---LQPCEEPLLRKSSRRFVIFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPH 127 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 128 W---NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 184 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D + LFN +P + KA+W+L++ S + +R + Sbjct: 185 SEMYSLLIDTYIKDPKKREFLFNAIETMPFVKKKADWSLRWIADRQS----TFGERVVAF 240 Query: 185 ILTRSLRF 192 + F Sbjct: 241 AAVEGIFF 248 >gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] Length = 329 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+ Y WE Y A + W EV + D W+ N L D ER Sbjct: 3 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERH 60 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 120 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF +P + KA WA+++ R + F C Sbjct: 121 DNKERDHLFRAIETIPCVAKKAQWAMKWI-------------DGSQTFAERIIAFAC 164 >gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit; AltName: Full=p41 gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula solidissima] Length = 384 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 10/194 (5%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T L + + + +L +LP++Y W+ Y A + W EV + Sbjct: 42 TQKTPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDL 101 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+A W+S L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 102 SKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQI 158 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS + +I + D E LFN +P + KA+WA+++ SS + Sbjct: 159 AMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWINDDSS----SYA 214 Query: 179 KRRRSRILTRSLRF 192 +R + + F Sbjct: 215 ERVVAFAAVEGIFF 228 >gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio] gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B (TP53 inducible) (RRM2B) [Danio rerio] Length = 349 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 13/194 (6%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E VHS + +I + D E LFN + +P + KA+WALQ+ +S + Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWISDTNS----TFG 182 Query: 179 KRRRSRILTRSLRF 192 +R + + F Sbjct: 183 ERLVAFAAVEGIFF 196 >gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio] Length = 349 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 13/194 (6%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E VHS + +I + D E LFN + +P + KA+WALQ+ +S + Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWISDTNS----TFG 182 Query: 179 KRRRSRILTRSLRF 192 +R + + F Sbjct: 183 ERLVAFAAVEGIFF 196 >gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480] gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480] Length = 405 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 20/188 (10%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++A + ++ +L L P+KY E Y A + W E+ + D+ W Sbjct: 65 VKAKTPKELEAEEPLLQENPQRFVLFPIKYH---EMYKKAEASFWTAEEIDLSKDIHDWN 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS Sbjct: 122 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSE 179 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 T+ +I + ++ + LF +P I KA+WA+++ Q + S Sbjct: 180 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 227 Query: 187 TRSLRFLC 194 R + F Sbjct: 228 QRLVAFAA 235 >gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] Length = 357 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 97/176 (55%), Positives = 130/176 (73%), Gaps = 2/176 (1%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++KR++N + DVNQL+P+KY WAWE Y + C NHWMP+EVPM D+ W++ LTDD Sbjct: 25 AEEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRT-GSLTDD 83 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ S Sbjct: 84 EKLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVES 143 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 LGLD+ E+FNMYRE+PSI K + +Q T L P+F + L + + Sbjct: 144 LGLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYY 199 >gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 4 [Canis familiaris] Length = 374 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E V D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti] gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti] gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] Length = 397 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 10/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A N + + + + + +L + P++Y W+ Y A + W EV Sbjct: 57 LAKNELSAAQKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 116 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DLA W+ L E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 117 LSKDLADWEK---LKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 173 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E VHS + +I + D E LFN +P + KA+WAL + + + + Sbjct: 174 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWISSKKA----NF 229 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 230 GERVVAFAAVEGIFF 244 >gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Anolis carolinensis] Length = 414 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 10/182 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + +++ +L + P+ Y W+ Y A + W EV + D W N Sbjct: 87 ENGLKSNEEPLLRKNPRRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NK 143 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 144 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 203 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 +I + D E LFN +P + KA+WAL++ + + + +R + + Sbjct: 204 LIDTYIKDPEERDFLFNAIETMPCVKKKADWALRWIRDRKA----TFGERVVAFASVEGI 259 Query: 191 RF 192 F Sbjct: 260 FF 261 >gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus] gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus] Length = 351 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W Y A + W EV + DL W Sbjct: 21 ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ S + +R + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Oryctolagus cuniculus] Length = 339 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 10/181 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 N D++ +L S + P++Y W+ Y A + W EV + DL W N L Sbjct: 13 PDTNEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NRL 69 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + + Sbjct: 70 TSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLL 129 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D + LFN +P + KA+WAL++ S + +R + + Sbjct: 130 IDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGERVVAFAAVEGIF 185 Query: 192 F 192 F Sbjct: 186 F 186 >gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes] Length = 418 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 9/191 (4%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 L GE + ++ +L L P++Y W+ Y A + W E+ + D Sbjct: 75 AALQKRFVGEVELPESEEPLLLESRRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKD 134 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L D ER I R L FFA+S+ +V N++ + E R + Q E Sbjct: 135 LHDWN--NRLNDSERFFISRVLAFFAASDGIVNENLLERFSNEVQVAEARCFYGFQIMME 192 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 +HS T+ +I + D E LF+ +P I KA WAL++ S + +R Sbjct: 193 NIHSETYSLLIDTYIKDPVERDFLFDAIETIPCIKRKAEWALRWISDEHS----VFGERL 248 Query: 182 RSRILTRSLRF 192 + + F Sbjct: 249 VAFAAVEGIFF 259 >gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I isoform 1 [Strongylocentrotus purpuratus] gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I [Strongylocentrotus purpuratus] Length = 412 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 12/196 (6%) Query: 2 ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 A + + P +G+K V N +D+ +L + + P++Y W+ Y A + W EV Sbjct: 66 AKSKLVKPENSGKKVVSFNKEDEPLLRENARRFVIFPIQYHDIWQFYKKAEASFWTAEEV 125 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + DL W + L D+ER I L FFA+S+ +V N+V + + E R + Sbjct: 126 DLSKDLDHWAN---LKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFYGF 182 Query: 120 QAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 Q E +HS + +I + D LFN +P +T KA WAL + + S+ Sbjct: 183 QIAIENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNWIGSDSAD---- 238 Query: 177 WNKRRRSRILTRSLRF 192 + R + + F Sbjct: 239 FGTRIVAFAAVEGIFF 254 >gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] Length = 397 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 17/187 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 GE + +++ +L L P++Y W+ Y A + W E+ + DL W Sbjct: 60 FVGEVDLPEEEEPILKENKGRFVLFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDWD- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N +TD ER + L FFA+S+ +V N+V + E R + Q E +HS T Sbjct: 119 -NRMTDPERHFVSHVLAFFAASDGIVNENLVERFSAEVQATEARCFYGFQIMMENIHSET 177 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + + LFN VP + KA+WAL++ R+ Sbjct: 178 YSLLIDTYIREPERRDFLFNAIETVPVVKQKADWALRWI------------SDHRASFSE 225 Query: 188 RSLRFLC 194 R + F Sbjct: 226 RLVAFAA 232 >gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST] gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST] Length = 400 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 10/183 (5%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + + +L + P++Y W+ Y A + W EV + D+ W++ Sbjct: 72 ESAPFDPSIEPLLRDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET-- 129 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ER I L FFA+S+ +V N+V + + E R + Q E VHS + Sbjct: 130 -LKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYS 188 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +I + D E LFN +P + KA+WAL + + + + +R + Sbjct: 189 LLIDTYIRDSKEREFLFNAIETLPCVKRKADWALNWISSKKA----NFGERVVAFAAVEG 244 Query: 190 LRF 192 + F Sbjct: 245 IFF 247 >gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 361 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + ++ +L S + P++Y W+ Y A + W EV + DL W N L Sbjct: 37 LKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKS 93 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I L FFA+S+ +V N+V + + PE R + Q E +HS + +I Sbjct: 94 DEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSLLID 153 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D + LFN +P + KA+WALQ+ S + +R + + F Sbjct: 154 TYIKDPQKREFLFNAIETMPCVKRKADWALQWIADRKS----TFGERVVAFAAVEGIFF 208 >gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 2 [Canis familiaris] Length = 351 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E V D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] Length = 353 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 102/180 (56%), Positives = 129/180 (71%), Gaps = 2/180 (1%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM D+ LW+S N Sbjct: 17 QRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELWRS-NA 75 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+H F Y Sbjct: 76 LTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHTHAFHY 135 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGLD E+FNMYREV SI K + + T+ + P F + + F Sbjct: 136 IVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRNLVGFY 195 >gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina 98AG31] Length = 385 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 9/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W Y A + W E+ + D+ W+ N L DDE+ Sbjct: 52 EEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE--NRLNDDEKH 109 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N++ + E R + Q E +HS + +I + Sbjct: 110 FIKHVLAFFAASDGIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSEVYSLLIDTYVR 169 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E LF+ +P I KA+WAL++ S + +R + + F Sbjct: 170 EPIERSHLFDAIDTIPCIRKKADWALKWISDKQS----TFGERLIAFAAVEGIFF 220 >gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo] Length = 399 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 10/176 (5%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L + P++Y W+ Y A + W EV + D++ W+ L +E+ Sbjct: 75 EEEPLLRDNPRRFVVFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWEK---LKSEEK 131 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 132 HFVSHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYV 191 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WAL++ S + +R + + F Sbjct: 192 KDPTERDFLFNAIETMPCVKEKADWALRWINDEQS----SFGERVVAFAAVEGIFF 243 >gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana) tropicalis] gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis] Length = 346 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 13/191 (6%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG + G +++ L + P+ Y W+ Y A + W EV + D Sbjct: 13 TGDKNLTNGHSD---EEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W+ L +ER I L FFA+S+ +V N+V + + PE R + Q E Sbjct: 70 LVHWEK---LKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIE 126 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 VHS + +I + D LFN +P + KA WAL++ S + +R Sbjct: 127 NVHSEMYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRWI----SDRKASFGERV 182 Query: 182 RSRILTRSLRF 192 + + F Sbjct: 183 VAFAAVEGIFF 193 >gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E + +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 25 DTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 82 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 83 -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 141 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ S + +R + Sbjct: 142 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGERVVAFAAV 197 Query: 188 RSLRF 192 + F Sbjct: 198 EGVFF 202 >gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] Length = 493 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 19/195 (9%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 P R + D+ +L + L P+KY WE Y + W EV Sbjct: 148 PAEVAEPSAEVASRSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFT 207 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W L +E+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 208 GDLIDWH---RLKPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIA 264 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + ++ + E LF+ +P++ KA WA+++ + + Sbjct: 265 MENVHSEMYSVLLDHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWISSSNV-------- 316 Query: 180 RRRSRILTRSLRFLC 194 R + F C Sbjct: 317 -----FAERLVGFAC 326 >gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium dendrobatidis JAM81] Length = 336 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 9/187 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P++ + V ++ +L + L P+KY W Y A + W EV + D W Sbjct: 2 PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + + LTDDER I R L FFA+S+ +V N+V + + PE R + Q E +HS Sbjct: 62 EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119 Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRI 185 + +I + D E LF+ VP I KA+WAL++ S + +R + Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRWI----SDKKSSFGERLVAFA 175 Query: 186 LTRSLRF 192 + F Sbjct: 176 AVEGIFF 182 >gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus] gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus] Length = 333 Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 11/179 (6%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 NEKHFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P + KA+WA ++ +S + +R + + F Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAS-----YGERLVAFAAVEGIFF 181 >gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens] Length = 351 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + S E + +++ +L S + P++Y W+ Y A + W EV + Sbjct: 13 DQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + +I + D + LFN +P + KA+WAL++ S + + Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGE 185 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 186 RVVAFAAVEGVFF 198 >gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] Length = 324 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 20/178 (11%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ VP + KA WAL++ R + F Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWID--------------NGSFAERLVAFAA 163 >gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus norvegicus] gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus norvegicus] Length = 351 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ S + +R + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 10/181 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W++ L Sbjct: 80 KDPLIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---L 136 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 137 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLL 196 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D E LFN +P + KA W+L++ +P + +R + + Sbjct: 197 IDTYIKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP----YCERLVAFAAVEGIF 252 Query: 192 F 192 F Sbjct: 253 F 253 >gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase small subunit gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum] gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] Length = 338 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+KY W Y A +HW+ E+ + +D W+ K LTD+ER Sbjct: 12 EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYK--LTDNERHF 69 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 70 ISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKD 129 Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + +LFN +P I KA WAL++ S + +R + + F Sbjct: 130 KQTKDKLFNAIETIPCIKKKAEWALRWINDSDS-----FAERLVAFAAVEGIFF 178 >gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] Length = 377 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 9/190 (4%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L+ + + +D+ +L L P++Y W Y A + W E+ + D+ Sbjct: 46 SLAGAASETVLIRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDM 105 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W + L D+ER IK L FFA+S+ +V N+V + E R + Q E Sbjct: 106 RDWTER--LDDNERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMEN 163 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS T+ +I + D E LF +P I KA+WAL++ SS + +R Sbjct: 164 IHSETYSLLIDTYIKDPQERDHLFAAIETIPCIKRKADWALRWISDKSS----TFAERLV 219 Query: 183 SRILTRSLRF 192 + + F Sbjct: 220 AFAAVEGIFF 229 >gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo sapiens] gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) isoform 2 [Pan troglodytes] gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2 gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens] gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens] gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo sapiens] gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens] gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo sapiens] gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct] gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic construct] Length = 351 Score = 217 bits (552), Expect = 9e-55, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + S E + +++ +L S + P++Y W+ Y A + W EV + Sbjct: 13 DQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + +I + D + LFN +P + KA+WAL++ S + + Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGE 185 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 186 RVVAFAAVEGVFF 198 >gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] Length = 333 Score = 217 bits (552), Expect = 9e-55, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 18/180 (10%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W+ N L++D Sbjct: 3 SMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSND 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 ERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDT 120 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF +P +T KA WA+++ R + F C Sbjct: 121 YIKDNKERDHLFRAIETIPCVTKKAEWAMKWING-------------SQSFAERIVAFAC 167 >gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens] Length = 330 Score = 217 bits (552), Expect = 9e-55, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 19/178 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + + P+KY WE Y A + W EV + D W+ LTD+ER Sbjct: 5 QEEPILMENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWE---ALTDNER 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 62 HFISHVLAFFAASDGIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 121 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P +T KA WAL++ + R L F C Sbjct: 122 KDHAEKNRLFNAIETIPCVTKKAEWALKWIHSA-------------GSFAERILAFAC 166 >gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum] Length = 335 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 10/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D L P+KY W Y A + W E+ + D+ W++K L D+ER Sbjct: 6 EEPLLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWENK--LNDNERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 64 FIKNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E LFN +P + KA+WAL++ S + +R + + F Sbjct: 124 NPDEKKVLFNAIETIPCVKKKADWALRWITNSKS-----FAERLVAFAAVEGIFF 173 >gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small chain B; AltName: Full=Ribonucleoside-diphosphate reductase R2B subunit; AltName: Full=Ribonucleotide reductase small subunit B gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana] Length = 333 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D W+ N LT+DER Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIK 123 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF +P +T KA WA+++ R + F C Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWING-------------SQSFAERIVAFAC 167 >gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 3 [Canis familiaris] Length = 338 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E V D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] Length = 387 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 13/195 (6%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A+++ + P K+ N ++ +L + P+KY W+ Y A + W EV Sbjct: 50 FADDSEVKP--QNVKKFNTEE-PLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVD 106 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D W + L D+ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 107 LSKDTQHW---DSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQ 163 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS + +I + D E LFN +P + KA+WAL + ++ + Sbjct: 164 IAMENIHSEMYSLLIDTYIKDPKERDYLFNAIETLPCVKRKADWALNWIGNKNA----GF 219 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 220 GERVVAFAAVEGIFF 234 >gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis] Length = 335 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 19/184 (10%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E+ + + +L + D + P+KY WE Y A + W EV + D+ W+ Sbjct: 6 EQSLEDSQEPLLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWE---R 62 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+DDER + L FFA+S+ +V N+ + + PE R + Q E +HS + Sbjct: 63 LSDDERHFVSHVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSL 122 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 ++ + D E LF+ VP + KA+WAL++ R + Sbjct: 123 LLEAYIKDPKEKDKLFHAIDTVPVVRKKAHWALKWING-------------SDLFSERLI 169 Query: 191 RFLC 194 F C Sbjct: 170 AFAC 173 >gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV] gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV] Length = 338 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 11/189 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+P GEK + + +L + P++Y W Y A + W EV + D Sbjct: 6 LAPAD-GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTR 64 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ L D+ER IK L FFA+S+ +V N+V + + E R + Q E V Sbjct: 65 DWE---RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENV 121 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 HS + +I + E L N +P + KA WAL++ + + + +R + Sbjct: 122 HSEMYSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIASKEA----TFGERLVA 177 Query: 184 RILTRSLRF 192 + F Sbjct: 178 FAAVEGVFF 186 >gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii] gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii] Length = 351 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + S E + +++ +L S + P++Y W+ Y A + W EV + Sbjct: 13 DQDERSSSDTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + +I + D + LFN +P + KA+WAL++ S + + Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGE 185 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 186 RVVAFAAVEGVFF 198 >gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis] Length = 366 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 10/188 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P++ ++ ++ +L + LLPL+Y W Y A + W EV ++ D Sbjct: 33 TPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRKDAND 92 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W L DE+ I L FFA+S+ +V N+V + + E R + Q E VH Sbjct: 93 WAK---LNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAIENVH 149 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S + +I + D E LFN +P + KA+WAL++ SP + +R + Sbjct: 150 SEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWIGDRQSP----FCERLVAF 205 Query: 185 ILTRSLRF 192 + F Sbjct: 206 AAVEGIFF 213 >gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] Length = 324 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 20/178 (11%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ VP + KA WAL++ R + F Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRWID--------------NGNFAERLVAFAA 163 >gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] Length = 304 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 10/184 (5%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + N + + +L + P+++ W Y A + W EV + DL W+ Sbjct: 22 NDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHWE-- 79 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L ER I L FFA+S+ +V N+V + + E R + Q E VHS + Sbjct: 80 -RLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENVHSEMY 138 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +I + + E LFN +P + KA+WAL++ ++ + +R + Sbjct: 139 SLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKWISHKTA----TFAERVVAFAAVE 194 Query: 189 SLRF 192 + F Sbjct: 195 GIFF 198 >gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis] gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 10/181 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W++ L Sbjct: 80 KDPLIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---L 136 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 137 KPEERYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLL 196 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D E LFN +P + KA W+L++ +P + +R + + Sbjct: 197 IDTYIKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP----YCERLVAFAAVEGIF 252 Query: 192 F 192 F Sbjct: 253 F 253 >gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus] Length = 333 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 11/179 (6%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P + KA+WA ++ + + +R + + F Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFTAVEGIFF 181 >gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] Length = 353 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 101/185 (54%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + A R +KR++N + DVNQL+P+KY WAWE YL+ C NHWMPTEVPM D+ +W Sbjct: 12 LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+ Sbjct: 72 KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF Y++ SLGL EGE+FNMY EVP+I K + ++ T + S F R L Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRN 190 Query: 189 SLRFL 193 + + Sbjct: 191 LIGYY 195 >gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis] Length = 401 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY WE Y A + W E+ + DL W N + ++ER Sbjct: 75 DEPLLVENKRRFVLFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRILAFFAASDGIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P I KA WA+++ Q + R + F Sbjct: 193 DPKESEFLFNAIETIPQIKEKAEWAIRWIQ------------DDDALFGERLVAFAA 237 >gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis] gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura] gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis] gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura] Length = 391 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 10/194 (5%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 S ++ + + +L + P++Y W+ Y A + W EV + Sbjct: 52 PEKPAQSIMEKTGSPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D W LTD+ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 112 SKDATDWA---RLTDNERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQI 168 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E VHS + +I + + E LFN +P++ KA+WA+ + + S+ + Sbjct: 169 AMENVHSEMYSVLIDTYIREPQERDYLFNAIETMPAVKRKADWAMSWISSKSA----NFA 224 Query: 179 KRRRSRILTRSLRF 192 +R + + F Sbjct: 225 ERIIAFAAVEGIFF 238 >gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca] Length = 336 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 6 DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 64 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 122 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ + S + +R + Sbjct: 123 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS----TFGERVVAFAAV 178 Query: 188 RSLRF 192 + F Sbjct: 179 EGIFF 183 >gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 1 [Callithrix jacchus] Length = 351 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + S E + +++ +L S + P++Y W+ Y A + W EV + Sbjct: 13 DQDERSSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E VHS + +I + D + LFN +P + KA+WAL++ S + + Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGE 185 Query: 180 RRRSRILTRSLRF 192 R + + F Sbjct: 186 RVVAFAAVEGVFF 198 >gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis] Length = 352 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 10/176 (5%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + + +L + P++Y W+ Y A + W EV + DLA W + L +E+ Sbjct: 3 EGEPLLQENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHW---DSLKPEEK 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+V + + PE R + Q E+VHS + +I + Sbjct: 60 HFISHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYI 119 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WALQ+ +S + +R + + F Sbjct: 120 RDLKEREHLFNAIYTMPCVKRKADWALQWINDSTS----TFGERLVAFAAVEGIFF 171 >gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius] Length = 246 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P++Y W+ Y A + W EV + DL W + L D+ER Sbjct: 1 EPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---DSLKDEERYF 57 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + D Sbjct: 58 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 117 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WAL + ++ + +R + + F Sbjct: 118 PKERDFLFNAIETMPCVKKKADWALNWIGDKNAQ----YGERVVAFAAVEGIFF 167 >gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus] Length = 398 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 10/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A N + + + + + +L + P++Y W+ Y A + W EV Sbjct: 58 LAKNEMSAAHKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 117 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DLA W+ L E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 118 LSKDLADWEK---LKSGEKHFISHVLAFFAASDGIVNVNLVERFSQEVQVTEARCFYGFQ 174 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E VHS + +I + D E LFN +P + KA+WAL + + + + Sbjct: 175 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWISSKQA----NF 230 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 231 GERVVAFAAVEGIFF 245 >gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] Length = 422 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + P++Y W+ Y A + W E+ + D+ WK+K L ++ER Sbjct: 98 DEPLLKENKRRYVMFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWKNK--LNENERF 155 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 156 FISRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYIK 215 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P I KA+WA+++ + R + F Sbjct: 216 DPKEADFLFNAIDNIPQIKKKADWAIRWIN------------DDNALFAERLVAFAA 260 >gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] Length = 348 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 6/160 (3%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 A E+ + + +L + P++Y W Y A + W EV + D + W+ Sbjct: 18 APAPERPFDPRAEPLLRENPRRFVIFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWE 77 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D+ER IK L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 78 ---RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSE 134 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYT 166 + +I + E L N +P + KA WAL++ Sbjct: 135 MYSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWI 174 >gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus caballus] Length = 351 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N LT DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WALQ+ S + +R + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALQWIADRKS----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis] Length = 351 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 10/189 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 S + + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 17 RSSSDTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 76 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E V Sbjct: 77 HW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENV 133 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 HS + +I + D + LFN +P + KA+WAL++ S + +R + Sbjct: 134 HSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGERVVA 189 Query: 184 RILTRSLRF 192 + F Sbjct: 190 FAAVEGIFF 198 >gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] Length = 313 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 104/195 (53%), Positives = 140/195 (71%), Gaps = 3/195 (1%) Query: 1 MANNTGLSPIQAGEK-RVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58 M+ + ++ G+ RV +DKR++N + DVNQL+PLKY WAWE Y++ C NHWMPTE Sbjct: 1 MSIPNVENQLETGDGQRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTE 60 Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 VPM D+ W+S + LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLL Sbjct: 61 VPMTKDIETWRS-DKLTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLL 119 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 RQAFEEAVHSHTF Y++ SLGL+EGE+FNMY EVP+I K + ++ T + SP F + Sbjct: 120 RQAFEEAVHSHTFLYVVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDS 179 Query: 179 KRRRSRILTRSLRFL 193 L + + Sbjct: 180 YEGLQAFLKNLIGYY 194 >gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus] gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68] Length = 319 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Apis mellifera] Length = 384 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 10/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N + + E + N + + +L + P+++ W+ Y A + W EV Sbjct: 44 VINTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W N LT E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 104 LSKDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E VHS + +I + D E LFN +P + KA+WAL + S+ + Sbjct: 161 VAMENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNWINHESA----TF 216 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 217 PERVVAFAAVEGIFF 231 >gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 329 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y A + W EV + DD+ W++ LT DE+ Sbjct: 8 EPLLDENDQRFTMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMKHWET---LTKDEKHF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + L FFA+S+ +V N+ + + PE R + Q E +HS + +I D Sbjct: 65 VSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDQYIKD 124 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LF +P + KA+WAL++ + S R L F C Sbjct: 125 PVEKDHLFRAIDTIPCVKKKADWALKWIDSSDS-------------FAERLLAFAC 167 >gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga hutchinsonii ATCC 33406] gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga hutchinsonii ATCC 33406] Length = 324 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +++ ++ +L + L P+K+ W Y + W E+ + DL W + L D Sbjct: 1 MSLLEEPLLKENKNRFVLFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDWAN---LND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE + + Q E +HS T+ +I Sbjct: 58 GERHFISHVLAFFAASDGIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + D E LFN VP + KA+WAL++ + + F Sbjct: 118 TYIKDPKEKDRLFNAIDTVPCVKKKADWALRFID--------------NGSFIENIIAFA 163 Query: 194 C 194 Sbjct: 164 A 164 >gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus] Length = 319 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] Length = 343 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 20/182 (10%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R++ +++ +L D +LP+ Y WE Y + W E+ + DD+ W N L Sbjct: 19 RMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEIDLSDDMKDW---NNLN 75 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 76 DGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLI 135 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LF+ VP + K WAL++ + R + F Sbjct: 136 DTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIE--------------NGTFAERLVAF 181 Query: 193 LC 194 Sbjct: 182 AA 183 >gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus] gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara] Length = 319 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus] Length = 319 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus] gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus] Length = 319 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan] Length = 319 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small chain); putative [Variola major virus] gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus] gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus] gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus] gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus] Length = 333 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 11/179 (6%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P + KA+WA ++ +S + +R + + F Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAS-----YGERLIAFAAVEGIFF 181 >gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16] gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16] gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus] gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus] gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus] gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis] gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis] Length = 384 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 10/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M ++ + R N +D+ +L +LP++Y W+ Y A + W EV Sbjct: 44 MVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + L DDER+ + L FFA+S+ +V N+V + + PE R + Q Sbjct: 104 LSKDSHDFAK---LNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS + +I SL D+ E LFN +P + KA+WAL + +P + Sbjct: 161 IAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWI----NPQRASF 216 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 217 GERIIAFAAVEGIFF 231 >gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans] gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans] Length = 403 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N + ++ER Sbjct: 77 EEPLLMENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERF 134 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R + FFA+S+ +V N+V + +PE + + Q E +HS T+ +I + Sbjct: 135 FISRVIAFFAASDGIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYIK 194 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P I KA WA+++ Q + R + F Sbjct: 195 DPKESDFLFNAIETIPQIKEKAEWAIRWIQ------------DEDALFAERLVAFAA 239 >gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum] gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum] Length = 374 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 9/180 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + + +L + P++Y W+KY A + W EV + DL WK+K L Sbjct: 49 EFDPELEPLLQENPRRFVVFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWKNK--LN 106 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DER I L FFA+S+ +V N+V + + E R + Q E +HS + +I Sbjct: 107 SDERYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLI 166 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + + E LFN +P + KA+WAL + + ++ + +R + + F Sbjct: 167 ETYISEPQEKEFLFNAIETLPCVKKKADWALLWINSKNA----TFGERIVAFAAVEGIFF 222 >gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos taurus] gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus] Length = 351 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ S + +R + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|297209|emb|CAA48969.1| C8L [Variola virus] gi|745144|prf||2015436AF C8L gene Length = 333 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 11/179 (6%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P + KA+WA ++ + + +R + + F Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 181 >gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus] Length = 319 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus scrofa] Length = 351 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E ++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTSENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NRLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D + LFN +P + KA+WAL++ + + +R + Sbjct: 138 YSLLIDTYIRDPKQREFLFNAIETMPYVKKKADWALRWIADRKA----TFGERVVAFAAV 193 Query: 188 RSLRF 192 + F Sbjct: 194 EGIFF 198 >gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Ciona intestinalis] Length = 393 Score = 214 bits (545), Expect = 6e-54, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 10/177 (5%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 +++ +L + P++Y W+ Y A + W EV + D+ W+ L +E Sbjct: 71 KNEEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWE---ALKPNE 127 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 RKFISHVLAFFAASDGIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTY 187 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA WAL++ S S + +R + + F Sbjct: 188 IRDTHEREFLFNAIETLPCVRKKAEWALKWI----SDSESTYAERIIAFASVEGIFF 240 >gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 380 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 17/178 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + +L L P+KY W Y A + W E+ + D+ W +K L DE+ Sbjct: 46 DQEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWDNK--LNADEK 103 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 IK L FFA+S+ +V N++ + E R + Q E +HS + +I + Sbjct: 104 HFIKHVLAFFAASDGIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYV 163 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LF+ +P I KA+WAL + ++S R + F Sbjct: 164 REPTERAHLFDAIDTIPCIRKKADWALTWI------------SDKKSTFGERLIAFAA 209 >gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis] gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis] Length = 341 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 10/185 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 11 SRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAK 70 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS Sbjct: 71 ---LNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEM 127 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I SL D+ E LFN +P + KA+WAL + +P + +R + Sbjct: 128 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWI----NPQRASFGERIIAFAAV 183 Query: 188 RSLRF 192 + F Sbjct: 184 EGIFF 188 >gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus] gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus] Length = 319 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] Length = 331 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 17/179 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++ +L L P++Y W+ Y A + W E+ + DL W+ N + D+E Sbjct: 4 ASEEPLLKESIRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNE 61 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I + Sbjct: 62 RHFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTY 121 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN +P + KA WAL++ RS R + F Sbjct: 122 IREAAEREHLFNAVETIPCVARKAQWALRWIN------------DDRSSFGIRLVAFAA 168 >gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 463 Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + ++ +L D + P+KY W+ Y A + W EV + DL W Sbjct: 131 LTQATTKDLEAEETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDW- 189 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L ++ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 190 --VKLKEEERRFISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSE 247 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + ++ E LF+ +P + KA+WA+++ Q+ S + +R + Sbjct: 248 MYSLLIDAYIKEQEEKTRLFHAIDNMPCVKKKADWAIEWIQSEES----SFGERLVAFAA 303 Query: 187 TRSLRF 192 + F Sbjct: 304 VEGIFF 309 >gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus] gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 319 Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|885717|gb|AAA69333.1| C8L [Variola virus] gi|885826|gb|AAA69439.1| C8L [Variola virus] gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus] gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus] gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus] gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus] gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus] gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus] gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus] gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus] gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus] gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus] gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus] gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus] gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus] gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus] gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus] gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus] gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus] gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus] gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus] gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus] gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus] gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus] gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus] gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus] gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus] gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus] gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus] gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus] gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus] gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus] gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus] gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus] gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus] gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus] gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus] gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus] gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus] gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus] gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus] gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus] gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus] gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus] gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus] gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus] gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus] gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus] gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus] gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus] gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus] gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus] gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 213 bits (543), Expect = 9e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FF +S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 6/150 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FF +S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQT 168 E LFN +P + KA+WA ++ Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHD 148 >gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa] Length = 333 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 11/179 (6%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W+ EV + D+ W N LT Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P + KA+WA ++ + + +R + + F Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 181 >gi|885759|gb|AAA69374.1| E4L [Variola virus] gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus] gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus] gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus] gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus] gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus] gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus] gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus] gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus] gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus] gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus] gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus] gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus] gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus] gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum PN500] Length = 335 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 10/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D L P+KY W+ Y A + W E+ + D+ W++K L D+ER Sbjct: 6 EEPILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWENK--LNDNERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 64 FITNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123 Query: 141 DEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D +F+ +P++ KA+WAL++ S + +R + + F Sbjct: 124 DSETKRNIFHAIDTIPAVKKKADWALRWISNSKS-----FAERLVAFAAVEGIFF 173 >gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521] gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521] Length = 424 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 17/169 (10%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S L P+++ W+ Y A + W E+ + DL W +K L D+ER I L F Sbjct: 101 SRRFVLFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDWDNK--LNDNERHFISHVLAF 158 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---L 145 FA+S+ +V N+V + E R + Q E +HS T+ +I + + + L Sbjct: 159 FAASDGIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSETYSLLIDTYIREPEQREYL 218 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 F+ +P + KA+WAL++ +R+ R + F Sbjct: 219 FDAVETIPVVKQKADWALRWI------------SDKRATFAERLVAFAA 255 >gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis] Length = 388 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + +L L P+++ W Y A + W EV + D+A W N Sbjct: 59 TPAFDPQLEPLLKENPGRFVLFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NR 115 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS + Sbjct: 116 LNDNERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSL 175 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 +I + D + LFN +P + KANWAL + S+ + +R + + Sbjct: 176 LIDTYISDASQRQFLFNAIETLPCVAKKANWALNWISHDSA----TFAERVIAFAAVEGI 231 Query: 191 RF 192 F Sbjct: 232 FF 233 >gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] Length = 323 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 20/181 (11%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N++++ +L D LLP+ Y WEKY + W E+ + D+ W N L D Sbjct: 1 MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 58 GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + D E LF+ VP++T KA WAL++ + R + F Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIE--------------NGNFAERLVAFA 163 Query: 194 C 194 Sbjct: 164 A 164 >gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus] gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia virus] gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR] Length = 319 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen] Length = 319 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus] gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus] Length = 319 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV] gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura NPV] Length = 333 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N+ D+ +L + P++Y W Y A + W EV + DL+ W + L + Sbjct: 8 NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDW---DSLKES 64 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+V + + E R + Q E VHS + +I + Sbjct: 65 ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P+I KA W++++ ++ ++ + +R + + F Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKWIKSATA----TFAERLIAFAAVEGIFF 178 >gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] Length = 326 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 20/179 (11%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L+ + L P+++ WE Y A + W E+ + D+ WKS L D E Sbjct: 1 MQQEPILSENKNRFVLFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + E + + Q E +HS T+ +I + Sbjct: 58 RHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN + + KA+WAL++ R + F Sbjct: 118 IKDPSERDKLFNAIEHIDCVKKKADWALRWID--------------NGNFQERLIAFAA 162 >gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum PN500] Length = 323 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 10/177 (5%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D L P+K+ W+ Y A + W E+ + DL W+ K L D+E Sbjct: 2 MQEEPILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQDK--LNDNE 59 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 60 RYFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTY 119 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E LFN +P + KANWAL++ +S + +R + + F Sbjct: 120 IQNPAEKTKLFNAIETIPCVQKKANWALKWISNSTS-----FAERLVAFAAVEGIFF 171 >gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] Length = 329 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + D + P++Y WE Y A + W EV + D W++ LT ER Sbjct: 6 EEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 63 FITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF P + KA WAL++ R + F C Sbjct: 123 DSDEKSRLFRAVETNPCVEKKAKWALRWIDGSE-------------TFAERLVAFAC 166 >gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] Length = 343 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 10/184 (5%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + ++ ++ +L L P++Y W Y A + W EV + D+ W+ Sbjct: 7 ANQIEMDTSNEPLLQENPRRFVLFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWE-- 64 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L+ E+ IK L FFA+S+ +V N++ + + E R + Q E VHS + Sbjct: 65 -RLSSGEQHFIKHVLAFFAASDGIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEMY 123 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +I + + E LFN +P++ KA+WA + + ++ + +R + + Sbjct: 124 SVLIDTYIRERAERERLFNAIETIPAVKRKADWAFNWITSTTA----TFGERLLAFAVVE 179 Query: 189 SLRF 192 + F Sbjct: 180 GVFF 183 >gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var. neoformans JEC21] gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 401 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 17/187 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ D+ +L + L P+KY W+ Y A + W E+ + DL W++ Sbjct: 63 FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWEN 122 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 K L D+ER I+ L FFA+S+ +V N+V + E + + Q E +H+ T Sbjct: 123 K--LNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D LF+ +P I KA+WAL++ +RS Sbjct: 181 YSLLIDTYIKDTARRNFLFDAIDTIPCIRKKADWALRWI------------SDKRSCFGE 228 Query: 188 RSLRFLC 194 R + F Sbjct: 229 RLIAFAA 235 >gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase [Arabidopsis thaliana] gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A; AltName: Full=Ribonucleoside-diphosphate reductase R2A subunit; Short=AtRNR2; Short=Protein R2at; AltName: Full=Ribonucleotide reductase small subunit A gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana] gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana] gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana] Length = 341 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 19/192 (9%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L Q + ++ +L A++ + P++Y WE Y A + W EV + D+ Sbjct: 3 SLKEGQGRDMEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+ LTD E+ I L FFA+S+ +V N+ + PE R + Q E Sbjct: 63 QQWE---ALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS + ++ + D E LFN +P I+ KA W L + Q+ S Sbjct: 120 IHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMS----------- 168 Query: 183 SRILTRSLRFLC 194 R + F C Sbjct: 169 --FAVRLVAFAC 178 >gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 94/185 (50%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HT+ YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F + + Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] Length = 252 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P+KY W Y A + W EV + DL W +K L D+ER Sbjct: 89 EEPLLQENKRRYVMFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWNNK--LNDNERY 146 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R L FFA+S+ +V N++ + +PE + + Q E +HS + +I + Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVK 206 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN +P IT KA WA+++ Q + + R + F C Sbjct: 207 DPQEADFLFNAIENIPCITKKAEWAIKWIQ------------DKDALYAERLVAFCC 251 >gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis] gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis] Length = 384 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 10/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M ++ + R N +D+ +L +LP++Y W+ Y A + W EV Sbjct: 44 MVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + L D ER+ + L FFA+S+ +V N+V + + PE R + Q Sbjct: 104 LSKDSHDFAK---LNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS + +I SL D+ E LFN +P + KA+WAL + +P + Sbjct: 161 IAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWI----NPQRASF 216 Query: 178 NKRRRSRILTRSLRF 192 +R + + F Sbjct: 217 GERIIAFAAVEGIFF 231 >gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299] gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299] Length = 335 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 19/188 (10%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ V + +L+ D + P+KYG WE Y A + W EV + DD+ W Sbjct: 3 AESNNNEVAKVAEPLLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW- 61 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L +DE+ IK L FFA+S+ +V N+ + + PE R + Q E +HS Sbjct: 62 --NKLNNDEKHFIKHILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSE 119 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D E LF + +P I KA+WA ++ ++ + Sbjct: 120 MYSLLIDAYVKDAQEKTYLFQAIQNIPCIAKKADWAFKWIESSAD-------------FA 166 Query: 187 TRSLRFLC 194 R + F C Sbjct: 167 ERLIAFAC 174 >gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] Length = 325 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +LN + L P+KY W+ Y A ++ W EV + D W S L D ER Sbjct: 8 EPLLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDWLS---LNDKERYF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V ++ E + + Q E +HS + +I + D Sbjct: 65 ISNILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITD 124 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN +P I KA+WAL++ K +S TR + F C Sbjct: 125 QDEKTHLFNAISTIPCIKKKADWALKWI------------KDEKSSFATRVIAFAC 168 >gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus] gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96] gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS] Length = 319 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT +E+ Sbjct: 2 EPILAKNQNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] Length = 341 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 19/192 (9%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L Q + + + +L A++ + P++Y WE Y A + W EV + D+ Sbjct: 3 SLKESQRRDMDEDESKEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+ LTD E+ I L FFA+S+ +V N+ + PE R + Q E Sbjct: 63 QQWE---ALTDSEKHFISHVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS + ++ + D E LFN +P I+ KA W L + Q+ S Sbjct: 120 IHSEMYSLLLETFLKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMS----------- 168 Query: 183 SRILTRSLRFLC 194 R + F C Sbjct: 169 --FAVRLVAFAC 178 >gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 379 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 18/186 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 GE + ++ +L L P++Y W Y A + W E+ + D+ W Sbjct: 44 FVGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW-- 101 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + LT+ ER + R L FFASS+ +V N+V + PE R + Q E VHS T Sbjct: 102 -SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSET 160 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D E LF +PSI KA WAL W + + Sbjct: 161 YSLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWAL------------TWTSDKSTTFAE 208 Query: 188 RSLRFL 193 R + F Sbjct: 209 RLVAFA 214 >gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] Length = 328 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y + + W E+ + DL WK K LTDDER Sbjct: 5 EPILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWKGK--LTDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LFN P+I KA+WAL++ + S R + F Sbjct: 123 EVEKDKLFNALENFPAIKKKADWALKWIDSPS--------------FAERLIAFAA 164 >gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max] Length = 339 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 19/186 (10%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G + + + +L +S + P++Y WE Y A + W EV + D+ W++ Sbjct: 7 NGVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET- 65 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L+ E+ I L FFA+S+ +V N+ + PE R + Q E +HS + Sbjct: 66 --LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMY 123 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 ++ + D E LFN +P + KA WAL + + +S R Sbjct: 124 SLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIHSSTS-------------FAER 170 Query: 189 SLRFLC 194 + F C Sbjct: 171 LVAFAC 176 >gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii] gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii] Length = 412 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY W+ Y A + W E+ + DL W +K +++ ER Sbjct: 88 DEPLLVENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWNNK--MSEGERY 145 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 146 FISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYSR 205 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E LFN +P I KA WA+++ Q ++ Sbjct: 206 DTEESEFLFNAIENIPPIKEKAEWAIRWIQDDTA 239 >gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545] Length = 338 Score = 210 bits (535), Expect = 8e-53, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 19/169 (11%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ + P+KYG WE Y A + W EV + DD+ W+ L+DDE+ I L F Sbjct: 22 SERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWEK---LSDDEKHFISHILAF 78 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---L 145 FA+S+ +V N+ + + PE R + Q E +HS + +I + D + L Sbjct: 79 FAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIKDAAQKKYL 138 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 F +P + KA+WAL++ ++ + R + F C Sbjct: 139 FEAMENIPCVAKKADWALKWIESSA-------------TFAERLIAFAC 174 >gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis A/HAR-13] gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/Jali20/OT] gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/TZ1A828/OT] gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70] gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70s] gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D(s)2923] gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis A/HAR-13] gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/Jali20/OT] gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis Sweden2] gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/150] gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/11023] Length = 346 Score = 210 bits (535), Expect = 9e-53, Method: Composition-based stats. Identities = 95/185 (51%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F + + Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group] gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group] gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa Japonica Group] gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group] gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group] Length = 345 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 20 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 78 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D+ E LF VP++ KA+WA+++ R R + F C Sbjct: 138 DDVEKDRLFRAIDTVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 181 >gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group] Length = 345 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 20 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 78 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF VP++ KA+WA+++ R R + F C Sbjct: 138 DGAEKDRLFRAIDTVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 181 >gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia] Length = 507 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 21/195 (10%) Query: 5 TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +Q + V + D+ +L + L P+KY W Y + W E+ + Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 230 QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS T+ +I + DE E L + VP I KA WA+++ Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWIN------------ 334 Query: 180 RRRSRILTRSLRFLC 194 R + F Sbjct: 335 -NNDSFAERLIAFAA 348 >gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei] Length = 337 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWEK---LDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E L + R +P I KA WA+++ + +S TR + F Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAA 176 >gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335710|gb|AAA48294.1| F14 [Vaccinia virus] Length = 319 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N +T DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + + E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN +P + KA+WA ++ + + +R + + F Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAG-----YGERLIAFAAVEGIFF 167 >gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] Length = 323 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ +++ +L D +LP+ Y W+ Y + W E+ + DL W + L D Sbjct: 1 MSQENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDWAN---LND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 58 GERHFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + D E LF+ V + KA WAL++ + R + F Sbjct: 118 TYVKDPVEKDRLFHAIETVECVKKKAEWALRWIE--------------NGSFAERLVAFA 163 Query: 194 C 194 Sbjct: 164 A 164 >gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276] gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii WM276] Length = 401 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 17/187 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ D+ +L + L P+KY W+ Y A + W E+ + DL W++ Sbjct: 63 FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWEN 122 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 K L D+ER I+ L FFA+S+ +V N+V + E + + Q E +H+ T Sbjct: 123 K--LNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + D LF+ +P I KA+WAL++ +RS Sbjct: 181 YSLLIDTYIKDTARRNFLFDAMDTIPCIRKKADWALRWI------------SDKRSCFGE 228 Query: 188 RSLRFLC 194 R + F Sbjct: 229 RLIAFAA 235 >gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 413 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 9/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P++Y W Y A + W E+ + DL W +K L ++ER Sbjct: 89 EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERY 146 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N++ + PE + + Q E +HS T+ +I + Sbjct: 147 FISRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P I KA+WA+++ Q + + +R + + F Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQDDEA----LYGERLVAFAAVEGIFF 257 >gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] Length = 361 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 100/191 (52%), Positives = 126/191 (65%), Gaps = 2/191 (1%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT + KR++N DVNQL+PLKY WAWE YL+ C NHWMPTEVPM Sbjct: 14 NTTSTANTPPASEQQAQKKRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMT 73 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W+S N LT ERL+I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAF Sbjct: 74 KDIETWRS-NKLTAGERLVIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAF 132 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 EEA+H+HTF YI+ SLGL E E+FNMY E+PSI K + +Q T + P F Sbjct: 133 EEAIHTHTFLYIVESLGLSEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGM 192 Query: 183 SRILTRSLRFL 193 + L + + Sbjct: 193 QKFLQNLIGYY 203 >gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays] gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 15 EPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERHF 72 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 73 ISHVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIRD 132 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LF VP++ KA+WA+++ R R + F C Sbjct: 133 GTEKDRLFRAIETVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 175 >gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] Length = 331 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L L P+K+ WE Y + W E+ + D+ W++ L+D ER Sbjct: 9 EPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWEN---LSDGERHF 65 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + + E + + Q E +HS T+ +I + D Sbjct: 66 ISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYIKD 125 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQT 168 E L +P + KA+WAL++ + Sbjct: 126 SAEKDRLLRAIETIPCVQKKADWALKWIDS 155 >gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei] gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L Sbjct: 10 RKEGEVEEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D ER IK L FFA+S+ +V N+ + PE R + Q E +HS T+ + Sbjct: 67 DDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVL 126 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + +D E L + R +P I KA WA+++ + +S TR + Sbjct: 127 IDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVA 173 Query: 192 FLC 194 F Sbjct: 174 FAA 176 >gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 434/Bu] gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2tet1] gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis 434/Bu] gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 346 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 95/185 (51%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F + + Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L Sbjct: 10 RKEGEVEEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D ER IK L FFA+S+ +V N+ + PE R + Q E +HS T+ + Sbjct: 67 DDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVL 126 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + +D E L + R +P I KA WA+++ + +S TR + Sbjct: 127 IDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVA 173 Query: 192 FLC 194 F Sbjct: 174 FAA 176 >gi|194690416|gb|ACF79292.1| unknown [Zea mays] gi|194704028|gb|ACF86098.1| unknown [Zea mays] gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|223943167|gb|ACN25667.1| unknown [Zea mays] Length = 339 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 15 EPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERHF 72 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 73 ISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRD 132 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LF VP++ KA+WA+++ R R + F C Sbjct: 133 GTEKDRLFRAIETVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 175 >gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L Sbjct: 10 RKEGEVEEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D ER IK L FFA+S+ +V N+ + PE R + Q E +HS T+ + Sbjct: 67 DDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVL 126 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + +D E L + R +P I KA WA+++ + +S TR + Sbjct: 127 IDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVA 173 Query: 192 FLC 194 F Sbjct: 174 FAA 176 >gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative; ribonucleotide reductase r2 subunit 1, putative; ribonucleotide reductase small subunit 1, putative [Candida dubliniensis CD36] gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative [Candida dubliniensis CD36] Length = 413 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 9/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P++Y W Y A + W E+ + DL W +K L ++ER Sbjct: 89 EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERY 146 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R L FFA+S+ +V N++ + PE + + Q E +HS T+ +I + Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P I KA+WA+++ Q + + +R + + F Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQDDEA----LYGERLVAFAAVEGIFF 257 >gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D/UW-3/CX] gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276] gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276s] gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis D/UW-3/CX] gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9768] gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11222] gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11074] gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9301] gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-EC] gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-LC] Length = 346 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 95/185 (51%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F + + Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Weiss] gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum MopnTet14] gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia muridarum Nigg] Length = 346 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 96/185 (51%), Positives = 131/185 (70%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E SI AK ++ ++ T + P+F + + Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L + P+KY WE Y + W E+ + DL W++ L+D++R Sbjct: 14 KEDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRH 70 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 71 FISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIK 130 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E +F VPS+ KA WAL + + R + F C Sbjct: 131 DPAEKDKIFRAIETVPSVRKKAEWALSWIND-------------DNCFSERLIAFAC 174 >gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] Length = 362 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 17/185 (9%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G+ ++ +L L P++Y W Y + W E+ + DL W+ + Sbjct: 34 GDVDCPEHEEPLLKDSISRFVLFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEER- 92 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 + D+ER I L FFA+S+ +V N++ + PE R + Q E VHS T+ Sbjct: 93 -MNDNERHFISHVLAFFAASDGIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSETYS 151 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +I + D + L N +P + KA WAL++ RRS R Sbjct: 152 LLIDTYIRDPAQRTFLLNAVETIPCVRKKAEWALRWI------------ADRRSSFAIRL 199 Query: 190 LRFLC 194 + F Sbjct: 200 VAFSA 204 >gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 95 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 152 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 153 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 212 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 213 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 256 >gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 303 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 80/145 (55%), Positives = 105/145 (72%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 C NHWMP E+ M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 1 CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK + + + TL Sbjct: 61 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120 Query: 170 SSPSFHYWNKRRRSRILTRSLRFLC 194 + P+F ++L + F C Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFAC 145 >gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus] Length = 374 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L + + PLKY W Y A + W EV + D+A W+ +TD+ER Sbjct: 48 EEEPLLRENPNRFVIFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWEK---MTDNER 104 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I R L FFA+S+ +V N+V + + PE R + Q E +HS + +I + Sbjct: 105 FFISRVLAFFAASDGIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYI 164 Query: 140 LDEGE---LFNMYREVPSITAKANWALQY-TQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 DE E LFN EVP I KA WA++ QT+++P R + F Sbjct: 165 RDEKERNILFNAIFEVPCIAKKAEWAVKMGLQTITAP------------FAERVIAFAA 211 >gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L Sbjct: 10 RKEGEVEEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D ER IK L FFA+S+ +V N+ + PE R + Q E +H T+ + Sbjct: 67 DDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVL 126 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + +D E L + R +P I KA WA+++ + +S TR + Sbjct: 127 IDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVA 173 Query: 192 FLC 194 F Sbjct: 174 FAA 176 >gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila abortus S26/3] gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila abortus S26/3] Length = 349 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 96/185 (51%), Positives = 131/185 (70%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE Y++ C N W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F + S+ + Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187 Query: 189 SLRFL 193 + + Sbjct: 188 LVGYY 192 >gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] Length = 325 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+K+ WE Y + W E+ + DL W +K L DDER Sbjct: 5 EPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNNK--LNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EG---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E ELFN P+I K WAL++ ++ R + F Sbjct: 123 EAEKTELFNALEVFPAIAKKGEWALKWIES--------------DSFAERLIAFAA 164 >gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] Length = 359 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 101/192 (52%), Positives = 129/192 (67%), Gaps = 3/192 (1%) Query: 4 NTGLSPI-QAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T +SP+ R D KR++N + DVNQL+PLKY WAWE YL+ C NHWMPTEV M Sbjct: 11 KTPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMPTEVGM 70 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W+S + L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQYLLRQA Sbjct: 71 TKDIETWRS-SKLSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQYLLRQA 129 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 FEEAVHSHTF YI+ SLGL+E E+FNMY EVP+I K ++ T + F Sbjct: 130 FEEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTTDTFEG 189 Query: 182 RSRILTRSLRFL 193 L + + Sbjct: 190 AQAFLKNLIGYY 201 >gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila felis Fe/C-56] gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila felis Fe/C-56] Length = 349 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 96/185 (51%), Positives = 131/185 (70%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T+ + P+F + + Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIENLRQFIKN 187 Query: 189 SLRFL 193 + + Sbjct: 188 LVGYY 192 >gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] Length = 328 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 11/179 (6%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ ++ +L D + P+++ WE Y W E+ + DL+ W +K L+D Sbjct: 1 MSAAEEPILKENKDRFVIFPIQHHDLWEWYKKCEACFWTAEEIDLHQDLSDWNNK--LSD 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I Sbjct: 59 DEKYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + DE E LF P+I KA+WAL++ ++ PSF +R + + F Sbjct: 119 TYVKDEKEKNVLFQAIENFPAIKKKADWALKWIES---PSF---AERLIAFAAVEGIFF 171 >gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] Length = 330 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 19/180 (10%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + +L + + L P++ W+ Y A + W E+ + DL W K L DD Sbjct: 3 NTVSEPLLESVDNRFVLFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDEK--LNDD 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+ + + +PE R + Q E +H+ T+ +I + Sbjct: 61 ERHFITHVLAFFAASDGIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDT 120 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LFN VP + KA WAL++ + R + F Sbjct: 121 YIKDADEKHRLFNALETVPCVKKKAEWALRWID--------------KGSFAERLIAFAA 166 >gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4] Length = 327 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y + + W E+ + DL W SK LTDDER Sbjct: 6 EPILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSSK--LTDDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E LFN P+I KA WAL++ ++ PSF +R + + F Sbjct: 124 EKEKAMLFNAIETFPAIKKKAEWALKWIES---PSF---AERLIAFAAVEGIFF 171 >gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus] Length = 380 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 10/189 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S ++ E + + +L L P++ W+ Y A W E+ + D Sbjct: 46 VSEMRRKEMEGTLKPEPLLVENPGRFVLFPIQDNEVWQMYKKAEACFWTAEELDLAHDHK 105 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ GLTDDER +K L FFA+S+ +V N+ + E R + Q E + Sbjct: 106 DWE---GLTDDERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIAIENI 162 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 HS + +I + D E LFN VP + KA WAL++ P + +R + Sbjct: 163 HSEVYSLLIDTYVKDAAEKTHLFNAMETVPCVRRKARWALRWC----DPKLASYAERLVA 218 Query: 184 RILTRSLRF 192 + F Sbjct: 219 FAAVEGIFF 227 >gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] Length = 323 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + P+++ W+ Y A + W EV + D+ W++K L DER Sbjct: 2 NEPILQNNKNRFVIFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQNK--LNKDERY 59 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + + PE R + Q E +HS + +I + Sbjct: 60 FISHVLAFFAASDGIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIK 119 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E L +P + KA+WAL++ ++ R + F Sbjct: 120 DPKEKDHLLRAIETIPCVGKKADWALEWIES--------------DNFAERLIAFAA 162 >gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] Length = 325 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+K+ WE Y + W E+ + DL W +K LT+DE+ Sbjct: 5 EPILQENENRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNTK--LTEDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LF P+I KA+WAL++ + R + F Sbjct: 123 DVEKDRLFKAIEVFPAIKKKADWALRWIDS--------------DSFAERLIAFAA 164 >gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3] Length = 306 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa] gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa] Length = 342 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 21/188 (11%) Query: 12 AGEKRVNVDDK--RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +R+ +DK +L ++ + P++Y WE Y A + W EV + D+ W+ Sbjct: 8 TESERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWE 67 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L+D E+ I L FFA+S+ +V N+ + PE R + Q E +HS Sbjct: 68 ---ALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIAMENIHSE 124 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + ++ + D E LFN +P + KA WAL + Q+ Sbjct: 125 MYSLLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQSSMV-------------FA 171 Query: 187 TRSLRFLC 194 R + F C Sbjct: 172 ERLVAFAC 179 >gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus] Length = 274 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+KY W+ Y + + W EV + DL W + LT DE+ Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFASS+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQT 168 E LFN + + KA+WA ++ + Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWISS 148 >gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC] gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila psittaci 6BC] Length = 346 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 97/185 (52%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F + S+ + Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] Length = 325 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ WE Y W E+ + DL W +K L DDE+ Sbjct: 5 EPILQENKDRFVIFPIKHQDIWEWYKKQEACIWTAEEIDLHTDLNDWNNK--LNDDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + PE + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LF+ P+I KA WAL++ ++ R + F Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIES--------------DSFAERLIAFAA 164 >gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 376 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 18/195 (9%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N+T + +K + +L + + P+KY W+ Y A + W EV + Sbjct: 38 NSTTRKAPEVTDKGDEEVVEPLLANNPNRFVIFPIKYHDIWDFYKRAVASFWTVEEVDLS 97 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D W++ L+D ER I R L FFA+S+ +V N+V + + PE R + Q Sbjct: 98 KDYQHWEN---LSDGERFFISRVLAFFAASDGIVNENLVERFAQEVQVPEARFFYGFQIM 154 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS + ++ + D+ E LFN E I KA+WAL++ +P Sbjct: 155 IENIHSEMYSKMVETYIRDDNERKKLFNAINEFEFIKKKADWALKWIADKQAP------- 207 Query: 180 RRRSRILTRSLRFLC 194 R + F Sbjct: 208 -----YAERLIAFAA 217 >gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796] Length = 306 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] Length = 355 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 12/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + L P+++ WE Y A + W E+ + DL W + L D ER Sbjct: 34 EPILQENKNRFVLFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDWAN---LNDGERHF 90 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 91 ISHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKD 150 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LFN + + KA+WAL++ + S + +R + + F Sbjct: 151 PQERDKLFNAIDTLDCVKKKADWALRWIEQAS------FAERLVAFAAVEGIFF 198 >gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa Japonica Group] Length = 339 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L S+ + P++Y WE Y A + W EV + D W L+ DER Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF VP++ KA+WA+++ R R + F C Sbjct: 132 DGAEKDRLFRAIDTVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 175 >gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana] Length = 340 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 20/192 (10%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L Q + ++ +L A++ + P++Y WE Y A + W EV + D+ Sbjct: 3 SLKEGQGRDMEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+ LTD E+ I L FFA+S+ +V N+ + PE R + Q E Sbjct: 63 QQWE---ALTDSEKHFISHILAFFAASDGIVLENLA-RFLNDVQVPEARAFYGFQIAMEN 118 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +HS + ++ + D E LFN +P I+ KA W L + Q+ S Sbjct: 119 IHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMS----------- 167 Query: 183 SRILTRSLRFLC 194 R + F C Sbjct: 168 --FAVRLVAFAC 177 >gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila psittaci RD1] Length = 349 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 97/185 (52%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F + S+ + Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187 Query: 189 SLRFL 193 + + Sbjct: 188 LVGYY 192 >gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] Length = 325 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+K+ WE Y S + W E+ + DL W +K L++DER Sbjct: 5 EPILQENKNRFVIFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWNNK--LSNDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 VKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E ELFN P+I KA+WALQ+ ++ R + F Sbjct: 123 EVEKDELFNALEVFPAIKKKADWALQWIES--------------DSFAERLIAFAA 164 >gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus] gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus] gi|301134541|gb|ADK63655.1| M015L [Myxoma virus] Length = 322 Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWR---VLTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +D E LF + I KA W ++ + + + R + F Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWVQKWIRN------------KDATYAERLIAFA 163 >gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] Length = 323 Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+++ WE Y W E+ + DL W +K LTDDER Sbjct: 5 EPILQPNDNRFVIFPIQHNDLWEWYKKQQACFWTAEEIDLHSDLVDWTTK--LTDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LF P+I KA+WAL++ ++ S R + F Sbjct: 123 EVEKDRLFRAIEVFPAIKKKADWALKWIESES--------------FAERLIAFAA 164 >gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens] Length = 349 Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 9/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L L P+++ W+ Y A + W E+ + D+ W K L D ER Sbjct: 29 EPLLTEDPHRFVLFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQK--LNDKERHF 86 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 87 IKHVLAFFAASDGIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRD 146 Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E +P +T KA WAL++ P + +R + + F Sbjct: 147 AKEKHECLTAIDTMPCVTKKAQWALRWC----DPDRASFAERIIAFAAVEGIFF 196 >gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] Length = 339 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 26/196 (13%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A T + P A E +L SD + P+++ WE Y A + W EV + Sbjct: 3 AAPTLVPPCDAEEP--------LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDL 54 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D W L+ DER I L FFA+S+ +V N+ + E R + Q Sbjct: 55 SSDARHWDE--ALSPDERHFISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQI 112 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS + ++ + D+ E LF VP++ KA+WA+++ Sbjct: 113 AIENIHSEMYSLLLETYIRDDAEKDRLFRAIDTVPAVRRKADWAMRWIDGGE-------- 164 Query: 179 KRRRSRILTRSLRFLC 194 R R + F C Sbjct: 165 -----RFAERLVAFAC 175 >gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118] Length = 399 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata] Length = 387 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 12/191 (6%) Query: 8 SPIQAGEKRVNVD---DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 I+ + V + D+ +L L P++Y W+ Y A + W EV + D Sbjct: 43 EEIKKAKPHVTTNENCDEPLLRENPRRFVLFPIQYKDIWKMYKQAEASFWTVEEVDLAAD 102 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 W+ K L E+ I L FFA+S+ +V N+V + + PE R + Q E Sbjct: 103 AVHWEEK--LKPQEKYFISHVLAFFAASDGIVNENLVECFSQEVQLPEARAFYGFQIAIE 160 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 +HS + +I +L D E LFN +P + KA WAL++ + +++R Sbjct: 161 NIHSEMYSLLIDTLIKDPIEKSNLFNAIETMPCVQKKAVWALKWI----NKDCASFSERV 216 Query: 182 RSRILTRSLRF 192 + + F Sbjct: 217 VAFAAVEGIFF 227 >gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Meleagris gallopavo] Length = 339 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 10/161 (6%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W Y A + W EV + DL W+S L +E+ I L FFA+S+ Sbjct: 33 FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDG 89 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 90 IVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIET 149 Query: 152 VPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +P + KA+WA+++ + +R + + F Sbjct: 150 LPCVKKKADWAIRWI----GDKKATYGERVVAFAAVEGIFF 186 >gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 342 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 19/175 (10%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L ++ + P++Y WE Y A + W EV + D+ W++ L+ E+ I Sbjct: 21 PILKEQNQRFCMFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFI 77 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 78 SHVLAFFAASDGIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDS 137 Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN +P + KA WAL + + S R + F C Sbjct: 138 REKNRLFNAIETIPCVARKAKWALDWIHSSS-------------LYAERLVAFAC 179 >gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] Length = 403 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 26/189 (13%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P A + D+ +L W+ Y A + W E+ + DL Sbjct: 60 KPAVAPTIKAFEMDEPILQENPQRFV---------WQMYKKAEASFWTAEEIDLSKDLHD 110 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W +K LTDDE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 111 WNNK--LTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMENIH 168 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 S T+ +I + + + LFN +P I KA+WAL++ ++S Sbjct: 169 SETYSLLIDTYIKETAQRTYLFNAIDTIPCIRKKADWALRWI------------TDKKST 216 Query: 185 ILTRSLRFL 193 TR + F Sbjct: 217 FATRLIAFA 225 >gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818] Length = 408 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 18/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + +L +LP+++ W Y A + W EV + DL W+ GL Sbjct: 80 DEEIAAEPLLRENPSRFVILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLK 136 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + +I Sbjct: 137 DTEQHFIKHVLAFFAASDGIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLI 196 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P++ KA WA+++ +R+ R + F Sbjct: 197 DTYINDPQEKHMLFNAVETLPAVKRKAEWAMRWID------------HKRASFAERVVAF 244 Query: 193 LC 194 Sbjct: 245 AA 246 >gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c] gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1; AltName: Full=Ribonucleotide reductase R2 subunit 1; AltName: Full=Ribonucleotide reductase small subunit 1 gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces cerevisiae] gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae] gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c] Length = 399 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23] Length = 399 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] Length = 339 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P+++ WE Y A + W EV + D W L+ DER Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF VP++ KA+WA+++ R R + F C Sbjct: 132 DGAEKDRLFRAIETVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 175 >gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 399 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+S+V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] Length = 354 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 18/194 (9%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 + + D+ +L + L P++Y WE Y A + W EV Sbjct: 7 TANARATSSSVGSPSELDEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTG 66 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL + K L ++ER IK L FFA+S+ +V N+ + PE R + Q Sbjct: 67 DLYDFDHK--LKEEERRFIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAM 124 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E VHS + ++ D E LFN + + ++ KA+WAL++ + +S Sbjct: 125 ENVHSEMYSVLLDHYVRDPAERRQLFNAIQTIATVGKKADWALRWISSSNS--------- 175 Query: 181 RRSRILTRSLRFLC 194 R + F C Sbjct: 176 ----FAERLVAFAC 185 >gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789] gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a] gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291] Length = 399 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+KY WE Y + W E+ + DL W++ L+D++R Sbjct: 15 EDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHF 71 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 72 ISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKD 131 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 ++F VPS+ KA WAL + + R + F C Sbjct: 132 PEQKDKIFRAIETVPSVRKKAEWALSWIND-------------DNCFAERLIAFAC 174 >gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta] Length = 426 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72 + N + + +L + + P++Y WE Y A + W EVP+ D W K Sbjct: 92 KDDFNPELEPLLQEGPNRFVIFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDEK- 150 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DE+ I L FFA+S+ +V N++ + + E R + Q E +HS + Sbjct: 151 -LNSDEKYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYS 209 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +I + D E LFN +P + KA WAL + S+ + +R + Sbjct: 210 LLIETYISDPKEKDFLFNAIETLPCVGKKAKWALNWINHESA----TFPERVIAFAAVEG 265 Query: 190 LRF 192 + F Sbjct: 266 IFF 268 >gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] Length = 331 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 20/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + D+ +L D L P+++ WE Y A + W E+ + D W++ L Sbjct: 3 EVTTFQDEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWEN---L 59 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+ E IK L FFA+S+ +V N+ + E + + Q E VHS T+ + Sbjct: 60 TEGETHFIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLL 119 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D E LFN + + KA+WAL++ R + Sbjct: 120 IDTYVKDNKEKDKLFNAIDTMDCVKKKADWALRWIDE--------------GNYAERLIA 165 Query: 192 FLC 194 F Sbjct: 166 FAA 168 >gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO] Length = 399 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 392 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 11/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P+ + N +++ + L P++Y W KY + W E+ Sbjct: 51 VAPGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 111 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 167 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ ++ + D E L + + +P I KA WA+++ + +S + Sbjct: 168 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGSSAS-----F 222 Query: 178 NKRRRSRILTRSLRF 192 +R + F Sbjct: 223 QERLIGFAAVEGIFF 237 >gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] Length = 349 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 20/175 (11%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L L P+K+ WE Y + + W E+ + D+ W N L D ER Sbjct: 8 EPILEEDKGRFVLFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDW---NSLNDGERHF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + + E + + Q E +HS T+ +I + D Sbjct: 65 ISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKD 124 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E L N +P + KA WAL++ R + F Sbjct: 125 PVEKDRLLNAIDTIPCVQKKAEWALRWID--------------NGSFAERLIAFA 165 >gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] Length = 325 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+++ WE Y W E+ + DL W SK L DDER Sbjct: 5 EPILQKNENRFVIFPIQHNDIWEWYKKMEACFWTAEEIDLHQDLTDWNSK--LNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LF P+I KA+WAL++ ++ R + F Sbjct: 123 EAEKDQLFRAIEVFPAIKKKADWALKWIES--------------DSFAERLIAFAA 164 >gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 346 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+K+ WE Y A + W EV + D W L D+E+ Sbjct: 27 EPLLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDW---ITLNDNEQHF 83 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 84 ISHVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 143 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + LF VP++ KA+WAL++ + + R + F C Sbjct: 144 PKKKSDLFRAIHTVPTVAKKADWALKWIGS-------------DASFAERLVGFAC 186 >gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] Length = 382 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+K+ WE Y A + W EV + D W++ L ++E+ Sbjct: 63 EPLLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHF 119 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + L FFASS+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 120 VSHVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 179 Query: 142 EG---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 ELF VP++ KA+WAL + + + R + F C Sbjct: 180 PKKKSELFRAIHTVPTVAMKADWALHWIGS-------------DASFPERLVGFAC 222 >gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia] Length = 355 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 21/195 (10%) Query: 5 TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +QA + +N + D+ +L + L P+KY W Y + W E+ + Sbjct: 18 TPLSNVQASQTVLNQNYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 77 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 78 QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 134 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS T+ +I + DE E L + VP I KA WA+++ Sbjct: 135 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWIN------------ 182 Query: 180 RRRSRILTRSLRFLC 194 R + F Sbjct: 183 -ENDSFAERLIAFAA 196 >gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 392 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 20/203 (9%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 A + + P+ AG + + N +++ + L P++Y W KY + Sbjct: 43 AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ + Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSS 219 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 +S + +R + F Sbjct: 220 AS-----FQERLIGFAAVEGIFF 237 >gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila caviae GPIC] gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila caviae GPIC] Length = 346 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 97/185 (52%), Positives = 132/185 (71%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LGGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NDLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDEGE+FN Y E +I AK ++ + T + +P+F + + + Sbjct: 125 HTFLYICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNFSTDSVEGLRQFIKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 392 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 11/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 51 VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 111 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 167 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ ++ + D E L + + +P I KA WA+++ + +S + Sbjct: 168 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-----F 222 Query: 178 NKRRRSRILTRSLRF 192 +R + F Sbjct: 223 QERLIGFAAVEGIFF 237 >gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13] Length = 296 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] Length = 326 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ WE Y + + W E+ + DL W +K L DDER Sbjct: 6 EPILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTTK--LNDDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E LF P+I KA+WALQ+ ++ PSF +R + + F Sbjct: 124 EAEKDKLFKAIENFPAIKKKADWALQWIES---PSF---AERLIAFAAVEGIFF 171 >gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays] gi|194692834|gb|ACF80501.1| unknown [Zea mays] gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L SD + P+++ WE Y A + W EV + D W L+ DER Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDE--ALSPDERHF 72 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 73 ISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRD 132 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LF VP++ KA+WA+++ R R + F C Sbjct: 133 DVEKDRLFRAIDTVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 175 >gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] Length = 320 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+KY W+ Y + + W EV + DL W + LT DE+ Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFASS+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQT 168 E LFN + + KA+WA ++ + Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWISS 148 >gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] Length = 323 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+ + W+ Y A + W E+ + DL W K L +DE+ Sbjct: 5 EPILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDWDRK--LNNDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + + PE R + Q E +HS + +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKD 122 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 LF +P I+ KA+WAL++ + R + F Sbjct: 123 PTDKNRLFKALETIPCISNKADWALRWI--------------SQGSFSERLVAFAA 164 >gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus] gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus 6918VP60-T2] Length = 322 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWR---VLTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++ E LF + I KA W ++ + + + R + F Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWVQKWIRN------------KDATYAERLIAFA 163 >gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos saltator] Length = 344 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 10/183 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72 ++ N D + +L + + P++Y W+ Y A + W EVP+ D W+ K Sbjct: 10 KEEFNPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEEK- 68 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DER I L FFA+S+ +V N++ + + E R + Q E +HS + Sbjct: 69 -LNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYS 127 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +I + D E LFN +P +T KANWAL + S+ + +R + Sbjct: 128 LLIETYISDLKEKDFLFNAIETLPCVTKKANWALNWINHESA----TFPERIVAFAAVEG 183 Query: 190 LRF 192 + F Sbjct: 184 IFF 186 >gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus] gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus] Length = 322 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W+ Y A + W P EV + DL W LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDWH---ILTSDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +D E LF + I KA W ++ + + + R + F Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWVQKWIRN------------KDATYAERLIAFA 163 >gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus floridanus] Length = 343 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 7/175 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++ + +Q E+ N + + +L + + P++Y W+ Y A + W EVP Sbjct: 42 LSKTKAVQKVQLKEE-FNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVP 100 Query: 61 MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D W+ K L DER I L FFA+S+ +V N++ + + E R + Sbjct: 101 LHKLDKKDWEEK--LNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGF 158 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 Q E +HS + +I + D E LFN +PS+ KANWAL + S+ Sbjct: 159 QIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINHESA 213 >gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138] gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata] Length = 400 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 79/188 (42%), Gaps = 17/188 (9%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + E + D+ +LN D L P+KY W+ Y A + W E+ + DL W Sbjct: 64 VHRHELKELEKDEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN 123 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L ++ER I R L FFA+S+ +V N+V PE + + Q E +HS Sbjct: 124 --NRLNENERFFISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSE 181 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 T+ +I + D E LFN +P I KA WAL++ + Sbjct: 182 TYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIANSE------------ALFA 229 Query: 187 TRSLRFLC 194 R + F Sbjct: 230 ERLVAFAA 237 >gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 388 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 11/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 47 VAPGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 106 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 107 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 163 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ ++ + D E L + + +P I KA WA+++ + +S + Sbjct: 164 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGSSAS-----F 218 Query: 178 NKRRRSRILTRSLRF 192 +R + F Sbjct: 219 QERLIGFAAVEGIFF 233 >gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 18/191 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S + E ++ +L L P+K W+ Y A + W E+ + +DL Sbjct: 1 MSDHRRAESEGRHAEEPLLKENPGRFVLFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLK 60 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+S L+ +ER + L FFA+S+ +V N+ +++ E R + Q E + Sbjct: 61 DWES---LSINERHFVSHVLAFFAASDGIVNENLTGNFSTEVTSAEARCFYGFQIAVENI 117 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRS 183 HS T+ +I + D E L N VP + KANWAL++ + Sbjct: 118 HSETYSLLIDTYIKDAQEKDHLLNAIETVPCVQKKANWALRWCDA------------GNA 165 Query: 184 RILTRSLRFLC 194 R + F Sbjct: 166 SFAERCIAFAA 176 >gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis] gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis] Length = 224 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ WE Y + W E+ + D+ W +K L +DE+ Sbjct: 5 EPILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNTK--LNEDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LF+ P+I KA WAL++ ++ R + F Sbjct: 123 EVEKDKLFHAIEVFPAIKRKAEWALKWIES--------------DSFAERLIAFAA 164 >gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens] Length = 319 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 9/172 (5%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML S L P+++ W+ Y A + W EV + D+ W +K L D ER IK Sbjct: 1 MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDTK--LNDKERHFIK 58 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS + +I + D Sbjct: 59 HVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQ 118 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E +P + KA WAL++ P + +R + + F Sbjct: 119 KKHECLTAIDTMPCVAEKAQWALRWC----DPDHASFTERLLAFAAVEGIFF 166 >gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae TW-183] gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae TW-183] Length = 365 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 97/185 (52%), Positives = 129/185 (69%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 25 LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 84 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 85 KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 143 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDEGE+FN Y E SI AK ++ + T + P+F + + + Sbjct: 144 HTFLYICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKN 203 Query: 189 SLRFL 193 + + Sbjct: 204 LVGYY 208 >gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus cuniculus] Length = 400 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 12/196 (6%) Query: 2 ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 A T ++ ++ + + D+ +L ++ W + + W EV Sbjct: 59 APGTQMAAVRQKSPALASGMGDESGRRENPCRFSILTIESYGIWTRNKKGEASFWTAEEV 118 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ W+ L ++ER I L FFA+S+ +V N+V + + E R + Sbjct: 119 DLSKDIQHWE---ALKEEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 175 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 Q E +HS + +I + D E LFN +P + KA+WAL++ + Sbjct: 176 QIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEA----T 231 Query: 177 WNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 232 YGERVVAFAAVEGIFF 247 >gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 340 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +++ +L S + P++Y WE Y A + W EV + D+ W+S L Sbjct: 12 PDEEQEEEPILMKNSQRFCMFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES---L 68 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ++ E+ I L FFA+S+ +V N+ + PE R + Q E +HS + + Sbjct: 69 SNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLL 128 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 + + D E LFN + + KA WAL + Q+ + R + Sbjct: 129 LETYIKDSKEKHRLFNAIESISCVAGKAKWALDWIQSST-------------LFAERLIA 175 Query: 192 FLC 194 F C Sbjct: 176 FAC 178 >gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] Length = 328 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ W+ Y + W E+ + DL WK+K L DDER Sbjct: 6 EPILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWKNK--LNDDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LF+ P+I KA+WAL++ ++ S R + F Sbjct: 124 EKEKDILFHALENFPAIRKKADWALKWIESPS--------------FAERLIAFAA 165 >gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 388 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 11/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 47 VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 106 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 107 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 163 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ ++ + D E L + + +P I KA WA+++ + +S + Sbjct: 164 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-----F 218 Query: 178 NKRRRSRILTRSLRF 192 +R + F Sbjct: 219 QERLIGFAAVEGIFF 233 >gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] Length = 324 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 19/179 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L+ + L P+++ W Y A + W E+ + DL W++K L+DDE Sbjct: 2 ANAEPILSENKNRFVLFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWETK--LSDDE 59 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + Sbjct: 60 RHFVKHVLAFFAASDGIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTY 119 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D+ E LFN + + KA+WAL++ R + F Sbjct: 120 IKDQKEKNHLFNALDTIDCVRKKADWALRWID--------------NGSFAERLVAFAA 164 >gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 388 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 20/203 (9%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 N + P+ AG + + N +++ + L P++Y W KY + Sbjct: 39 TENLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 99 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ + Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSS 215 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 +S + +R + F Sbjct: 216 AS-----FQERLIGFAAVEGIFF 233 >gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 354 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 11/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 13 VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 73 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 129 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ ++ + D E L + + +P I KA WA+++ + +S + Sbjct: 130 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGSSAS-----F 184 Query: 178 NKRRRSRILTRSLRF 192 +R + F Sbjct: 185 QERLIGFAAVEGIFF 199 >gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis] Length = 345 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 11/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 4 VAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 63 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 64 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ ++ + D E L + + +P I KA WA+++ + +S + Sbjct: 121 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSSAS-----F 175 Query: 178 NKRRRSRILTRSLRF 192 +R + F Sbjct: 176 QERLIGFAAVEGIFF 190 >gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe] gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small Length = 391 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 17/183 (9%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K+ + D+ +L L P+KY W+ Y A + W E+ + DL W +K L Sbjct: 59 KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--L 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 DER I L +FA+S+ +V N++ + PE R Q E +HS T+ + Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 + + + E F+ + SI AKA WAL++ S R + Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224 Query: 192 FLC 194 F Sbjct: 225 FAA 227 >gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon aurantiacus ATCC 23779] gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus ATCC 23779] Length = 342 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 97/180 (53%), Positives = 126/180 (70%), Gaps = 2/180 (1%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 R N DKR++N DVNQL+PL+YGWAWE YL+ C NHWMP EV M D+A+W+S Sbjct: 6 GRFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRS-TS 64 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F + Sbjct: 65 LSADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLH 124 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I+ SLGL+E E+FNMY E+P I+ K + +Q T + P F + + + Sbjct: 125 IVESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGYY 184 >gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] Length = 328 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ WE Y W E+ + +DL W +K L +DER Sbjct: 6 EPILTENPDRFVIFPIKHDDLWEWYKKCEACFWTAEEIDLSEDLNDWNNK--LNEDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 VKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E LF P+I KA+WAL++ ++ PSF +R + + F Sbjct: 124 EKEKNKLFKALENFPAIKEKADWALKWIES---PSF---AERLIAFAAVEGIFF 171 >gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe 972h-] gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe] Length = 391 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 17/183 (9%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K+ + D+ +L L P+KY W+ Y A + W E+ + DL W +K L Sbjct: 59 KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--L 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 DER I L +FA+S+ +V N++ + PE R Q E +HS T+ + Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 + + + E F+ + SI AKA WAL++ S R + Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224 Query: 192 FLC 194 F Sbjct: 225 FAA 227 >gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 379 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 10/192 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N +S + E + + L + L P++ W+ Y A + W E+ + Sbjct: 42 NLEMSEFKRKEMNGEIPIEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVH 101 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W + LTD+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 102 DLKDW---SKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAI 158 Query: 124 EAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E +HS + +I + D + L +P +T KA+WA+++ P + +R Sbjct: 159 ENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWAIKWC----DPRVSSYPER 214 Query: 181 RRSRILTRSLRF 192 + + F Sbjct: 215 LLAFAAVEGIFF 226 >gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] Length = 325 Score = 203 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ W+ Y W E+ + +DL+ W +K L+ DER Sbjct: 5 EPILQENKDRFVIFPIKHHDIWDWYKKMEACFWTAEEIDLHEDLSDWNNK--LSADERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + + Sbjct: 63 LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LF P+I KA+WAL++ ++ R + F Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIES--------------DSFAERLIAFAA 164 >gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae CWL029] gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae J138] gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae AR39] gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae CWL029] gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae AR39] gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae J138] gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 346 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 97/185 (52%), Positives = 129/185 (69%), Gaps = 2/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDEGE+FN Y E SI AK ++ + T + P+F + + + Sbjct: 125 HTFLYICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKN 184 Query: 189 SLRFL 193 + + Sbjct: 185 LVGYY 189 >gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula] Length = 206 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%) Query: 7 LSPIQAGEK---RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 + ++ G R ++ +L ++ + P++Y WE Y A + W EV + Sbjct: 1 MGSLENGTPKKIREEETEEPILMKQTQRFCMFPVRYKQLWEMYKKAEASFWTAEEVDLSY 60 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ W + L+D E+ I L FFA+S+ +V N+ + PE R + Q Sbjct: 61 DVQHWAT---LSDSEKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAI 117 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E +HS + ++ + D E LFN +P + KA WAL + + +S Sbjct: 118 ENIHSEMYSLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWINSSTS--------- 168 Query: 181 RRSRILTRSLRFLC 194 R + F C Sbjct: 169 ----FAERLVGFAC 178 >gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1] Length = 329 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + + +L A +LP+++ W+ Y A + W EV + DL W N L D Sbjct: 6 EIQAEPLLRANPRRFVILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLNKD 62 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + +I + Sbjct: 63 EQFFIKHVLAFFAASDGIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLIET 122 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P++ KA WA+++ S + +R + + F Sbjct: 123 YVNDSAEKDSLFNAIETLPAVRRKAEWAMRWI----SHDKASFGERVVAFAAVEGIFF 176 >gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] Length = 328 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y W E+ + DL W +K L DDE+ Sbjct: 6 EPILQENKDRFVIFPIQHHDLWEWYKKQEACIWTAEEIDLHQDLTDWNTK--LNDDEKYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E LF P+I KA+WAL++ ++ PSF +R + + F Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKWIES---PSF---AERLIAFAAVEGIFF 171 >gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] Length = 326 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 11/174 (6%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y W E+ + +D W +K L DDER Sbjct: 5 EPILQENKDRFVIFPIQHNDLWEWYKKQEACIWTAEEIDLSEDANDWNNK--LNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E LF P+I KA+WAL++ + PSF +R + + F Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKWIDS---PSF---AERLIAFAAVEGIFF 170 >gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 392 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 20/203 (9%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 A + + PI + + N +++ + L P++Y W KY + Sbjct: 43 AEDLVIKPIATDAEVLLADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDW---VALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ + Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSS 219 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 +S + +R + F Sbjct: 220 AS-----FQERLIGFAAVEGIFF 237 >gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] Length = 325 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 18/179 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L+ + + LLP+KY W+ Y A ++ W EV + D+ W L E Sbjct: 5 EETELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDW---GKLNAKE 61 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + E R + Q E +HS + +I + Sbjct: 62 RHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTY 121 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ R +PS+ KA+WA+++ + + S TR + F C Sbjct: 122 IRDNDEKNFLFDAIRTIPSVKEKADWAIRWIE------------DKNSDFATRLVAFAC 168 >gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila] gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila SB210] Length = 376 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 27/202 (13%) Query: 4 NTGLSPI--------QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 TG++P+ + + +D+ +L + L P+KY WE Y + W Sbjct: 32 ATGMNPLPLLKSKNDEGKAPKEGYEDEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWT 91 Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 E+ + DL W+ LTD+ER IK L FFA+S+ +V N+ + PE R Sbjct: 92 ADEIDLYQDLKDWE---RLTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARA 148 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 + Q E +HS T+ +I + DE E LF + VP I KA WAL++ Sbjct: 149 FYGFQIAMENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWIN----- 203 Query: 173 SFHYWNKRRRSRILTRSLRFLC 194 +R + F Sbjct: 204 --------NNDNFASRLIAFAA 217 >gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] Length = 400 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 9/186 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +Q E + ++ +L A + L P++Y +E Y A + W E+ + DL W Sbjct: 63 VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N + ++ER I R L FFA+S+ +V N+ E + + Q E +HS Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 T+ +I + D E LFN +P I KA WAL++ + S + +R + Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWI----NDSEALFAERLVAFAA 236 Query: 187 TRSLRF 192 + F Sbjct: 237 IEGVFF 242 >gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi] gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi] Length = 338 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L PL+Y WE Y A + W EV + D+ W LT +E+ Sbjct: 18 EEALLKENPHRFVLFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQW---TTLTPNEQH 74 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +H+ + +I +L Sbjct: 75 FIKSVLAFFAASDGIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLIK 134 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D+ E LFN VPS+ KA WA+++ + R L F C Sbjct: 135 DQRERHRLFNAIDTVPSVQKKARWAMKWIN-------------NENLFAERLLAFAC 178 >gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++ +L D + P+KY W+KY A ++ W + + +D+ W+ L Sbjct: 10 RKEGEVEEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWEK---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D ER IK L FFA+S+ +V N+ + PE R + Q E +HS T+ + Sbjct: 67 DDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVL 126 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + +D E L + R +P I KA WA+++ + +S TR + Sbjct: 127 IDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVA 173 Query: 192 FLC 194 F Sbjct: 174 FAA 176 >gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica] Length = 418 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + + +L + + P++Y W Y A + W EV + D+ WK L Sbjct: 87 ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---L 143 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + + Sbjct: 144 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 203 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I +L D E LFN +P+I KA+WAL++ + R + Sbjct: 204 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWIGA-------------DAPYSVRVIA 250 Query: 192 FLC 194 F Sbjct: 251 FAA 253 >gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 11/178 (6%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ +L D + P+KY W+KY A ++ W E+ + DLA W+ + + Sbjct: 13 QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEK---MNEG 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + Sbjct: 70 EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E + + +P I KANWA+++ ++ SS + +R + + F Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS-----FAERLVAFAAVEGIFF 182 >gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma mansoni] gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative [Schistosoma mansoni] Length = 365 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ + +L L P++Y W Y A + W EV + D W+S L Sbjct: 37 KSEIELEPLLKPNPHRFVLFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LK 93 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER I L FFA+S+ +V N++ + + PE R + Q E +HS + +I Sbjct: 94 VGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLI 153 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN + + KA WAL + +S R + F Sbjct: 154 DTYIKDSKERDFLFNAISNLTCVAKKAQWALDWIG------------DSKSTFAERLVAF 201 Query: 193 LC 194 Sbjct: 202 AA 203 >gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila pecorum E58] gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pecorum E58] Length = 346 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 94/180 (52%), Positives = 130/180 (72%), Gaps = 2/180 (1%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV++++KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LWKS NG Sbjct: 11 KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 I SL LDE E+FN Y E SI AK ++ + T + P+F + + + + + Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNFSTDSIEGLRKFIKNLVGYY 189 >gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus] gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus] Length = 325 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++V + +L + + P+ Y W Y A + W EV + D W L++ Sbjct: 1 MDVVSEPILRQTTGRYVVFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDW---LKLSE 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I Sbjct: 58 NEKKFIKHILAFFAASDGIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + LD E LFN + + KANWA ++ ++ +S + +R + + F Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWARKWIESKNS----TYGERLIAFAAVEGIFF 172 >gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus] gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus] Length = 325 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N + +L + + P+ Y W+ Y A + W EV + D + W L+D Sbjct: 1 MNTSCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I Sbjct: 58 NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + LD E LFN + + KANWA ++ ++ + + +R + + F Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWIESKN----RTYGERLVAFAAVEGIFF 172 >gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 388 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 20/203 (9%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 + + PI G + + N +++ + L P++Y W KY + Sbjct: 39 TEDLVIKPIATGAEVLLADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W L D ER IK L FFA S+ +V N+ + PE Sbjct: 99 IWTVEEIDLGNDMKDW---VALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ + Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGSS 215 Query: 170 SSPSFHYWNKRRRSRILTRSLRF 192 +S + +R + F Sbjct: 216 AS-----FQERLIGFAAVEGIFF 233 >gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1] gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1] Length = 333 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 17/176 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + L S L P++Y WE Y A + W EV + DL W+++ LT+ ER Sbjct: 10 EFNLEEPSSRFTLFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREF 67 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA S+ +V +N++ + L+ PE + Q E VHS + +I D Sbjct: 68 ISHILAFFAGSDGIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRD 127 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 LFN VPSI KA W +++ +S R + F Sbjct: 128 PQRKHMLFNAIDTVPSIRKKAQWVIRWID------------DDKSSYADRLVAFAA 171 >gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 11/178 (6%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ +L D + P+KY W+KY A ++ W E+ + DLA W+ + + Sbjct: 13 QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEK---MNEG 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + Sbjct: 70 EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E + + +P I KANWA+++ ++ SS + +R + + F Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS-----FAERLVAFAAVEGIFF 182 >gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus] gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus] gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus] Length = 325 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N + +L + + P+ Y W+ Y A + W EV + D + W L+D Sbjct: 1 MNTPCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I Sbjct: 58 NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + LD E LFN + + KANWA ++ ++ + + +R + + F Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWIESKN----RTYGERLVAFAAVEGIFF 172 >gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica] Length = 382 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + + +L + + P++Y W Y A + W EV + D+ WK L Sbjct: 51 ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---L 107 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + + Sbjct: 108 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 167 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I +L D E LFN +P+I KA+WAL++ + R + Sbjct: 168 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWIGA-------------DAPYSVRVIA 214 Query: 192 FLC 194 F Sbjct: 215 FAA 217 >gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase M2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 345 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 11/195 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 4 VAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 63 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 64 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS T+ ++ + D E L + + +P I KA W +++ + +S + Sbjct: 121 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGSSAS-----F 175 Query: 178 NKRRRSRILTRSLRF 192 +R + F Sbjct: 176 QQRLIGFAAVEGIFF 190 >gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum] Length = 230 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 18/183 (9%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + ++ + +L L P++Y W Y A + W EV + D W+S L Sbjct: 33 SKDEIELEPLLKPNPHRFVLFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---L 89 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ER I L FFA+S+ +V N++ + + PE R + Q E +HS + + Sbjct: 90 KVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLL 149 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D E LFN + + KA WAL + +S R + Sbjct: 150 IDTYIKDSKERDFLFNAISNLTCVAKKAQWALDWIG------------DSKSTFAERLVA 197 Query: 192 FLC 194 F Sbjct: 198 FAA 200 >gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 240 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 18/178 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+ +L + P+KY W Y +A + W E+ + D A W+ LTD ER Sbjct: 9 SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGER 65 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I R L FFA+S+ +V N+ + PE R + Q E VHS + +I + Sbjct: 66 FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 125 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E F+ + I KA+WAL++ +SP R + F Sbjct: 126 KDPKEQMVHFDAIHQFECIKKKADWALRWIDDRNSP------------FPVRLIAFAA 171 >gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] Length = 326 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + L P+ + WE Y + W E+ +Q D+ WK+K L+ DE+ Sbjct: 5 EPILEENKNRFVLFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKTK--LSKDEQYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LF P+I KA+WALQ+ ++ R + F Sbjct: 123 DKEKDLLFKAIENFPAIKKKADWALQWIES--------------DSFAERLIAFAA 164 >gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 337 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 18/178 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+ +L + P+KY W Y +A + W E+ + D A W+ LTD ER Sbjct: 16 SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGER 72 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I R L FFA+S+ +V N+ + PE R + Q E VHS + +I + Sbjct: 73 FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 132 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E F+ + I KA+WAL++ +SP R + F Sbjct: 133 KDPKEQMVHFDAIHQFECIKKKADWALRWIDDRNSP------------FPVRLIAFAA 178 >gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta [Methylacidiphilum infernorum V4] gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum infernorum V4] Length = 361 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 99/181 (54%), Positives = 135/181 (74%), Gaps = 2/181 (1%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N Sbjct: 25 KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F Sbjct: 84 RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGLDE E+FNMY EV SI+ K + + T+ + F+ + + + + F Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGF 203 Query: 193 L 193 Sbjct: 204 Y 204 >gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 11/179 (6%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + ++ +L D + P+KY W+KY + ++ W E+ + DLA W+ + + Sbjct: 12 LQEQEEPLLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWEK---MNE 68 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ Sbjct: 69 GEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLD 128 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E + + +P I KANWA+++ ++ SS + +R + + F Sbjct: 129 TYITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS-----FAERLVAFAAVEGIFF 182 >gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] Length = 394 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 5/165 (3%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +Q + + ++ +LN + + P++Y +E Y A + W E+ + DL+ W Sbjct: 57 VQRHKLKEMEKNEPLLNEDKNRLIMHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLSDWN 116 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 K L +ER I R L FFA+S+ +V N+ + PE R + Q E +HS Sbjct: 117 DK--LNSNERFFISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENIHSE 174 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 T+ +I + D E LFN +P I KA WAL++ + Sbjct: 175 TYSLLIDTYIKDPKESDFLFNAIDYIPQIKEKAEWALRWINNDEA 219 >gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 26/196 (13%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A T L P A E +L SD + P+++ WE Y A + W EV + Sbjct: 3 AAPTLLPPCDAEEP--------LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGL 54 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D W L+ DER I L FFA+S+ +V N+ + E R + Q Sbjct: 55 SADARHWDE--ALSPDERHFISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQI 112 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 E +HS + ++ + D E LF VP++ KA+WA+++ Sbjct: 113 AIENIHSEMYSLLLETYIRDHVEKDRLFRAIDTVPAVRRKADWAMRWIDGGE-------- 164 Query: 179 KRRRSRILTRSLRFLC 194 R R + F C Sbjct: 165 -----RFAERIVAFAC 175 >gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum] Length = 337 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 10/186 (5%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + ++ + D + +L + L P++Y + Y A + W EV + D+ W Sbjct: 3 LPSEQEEFSDDQEPLLVSNPRRFVLFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW- 61 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L DE+ I L FFA+S+ +V N+V + E R + Q E +HS Sbjct: 62 --NILNSDEKRFISHVLAFFAASDGIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSE 119 Query: 130 TFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I + D + ++F+ +P + KA+WA+++ ++ S ++++R + Sbjct: 120 MYSLLIDTYISDFQEKDKMFSAIETMPFVKKKADWAIRWIESTES----HFSERLVAFAA 175 Query: 187 TRSLRF 192 + F Sbjct: 176 VEGIFF 181 >gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus] Length = 213 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 6/153 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W Y A + W EV + +L W Sbjct: 64 ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW-- 121 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE + Q E VHS Sbjct: 122 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEM 180 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + +I + D + LFN +P + KA+ Sbjct: 181 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKAD 213 >gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] Length = 328 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 20/176 (11%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+K+ WE Y A + W E+ + D W S L D ER Sbjct: 10 EPLLMDDPTRFVIFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHF 66 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + ++ E + + Q E +H+ T+ +I + D Sbjct: 67 ISHVLAFFAASDGIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKD 126 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E + N +P + KA+WA+++ + + + R + F Sbjct: 127 TTERQRMLNAIETIPCVKKKADWAIRWIE--------------QGTFIERLIAFAA 168 >gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb18] Length = 325 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 17/156 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 W+ Y A + W EV + DL W N L DDER I L FFA+S+ +V N+V Sbjct: 11 IWQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLV 68 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAK 158 + PE R + Q E +HS T+ +I + + + LF+ +P I K Sbjct: 69 ERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKK 128 Query: 159 ANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 A+WA+++ + + S R + F Sbjct: 129 ADWAIRWIE------------DKESTFAQRLVAFAA 152 >gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] Length = 330 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 19/181 (10%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + + +L D + P+++ WE Y W E+ +Q D+ W+ N L Sbjct: 1 MQTTQEPILQENPDRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDITDWQ--NSLNS 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I Sbjct: 59 DERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + D+ E LF P+I KA+WA+++ ++ S R + F Sbjct: 119 TYVKDDAEKDQLFRAIENFPAIKLKADWAMKWIESPS--------------FAERLIAFA 164 Query: 194 C 194 Sbjct: 165 A 165 >gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] Length = 325 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 17/156 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 W+ Y A + W E+ + DL W N L DDER I L FFA+S+ +V N+V Sbjct: 11 IWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLV 68 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAK 158 + PE R + Q E +HS T+ +I + + + LF+ +P I K Sbjct: 69 ERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKK 128 Query: 159 ANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 A+WA+++ + + S R + F Sbjct: 129 ADWAIRWIE------------DKESTFAQRLVAFAA 152 >gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] Length = 392 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 6/167 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 SP G+K + D+ +L + P++Y W+ Y A + W E+ + DL Sbjct: 55 SPYYLGKKE-DEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHD 113 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W +K L DER I L +FA+S+ +V N++ + E R Q E +H Sbjct: 114 WDNK--LNKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENIH 171 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171 S T+ ++ + D E F+ + SI AKA WAL++ + S Sbjct: 172 SETYSLLLDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWIEDPES 218 >gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 326 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + + L P+++ W Y A ++ W EV + D+ WK L E+ Sbjct: 8 EPLLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWKK---LNPKEKHF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + E + + Q E +HS + +I + D Sbjct: 65 ISNVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD 124 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + LFN + +PS+ KA+WA+++ + + S TR + F C Sbjct: 125 GEQKKFLFNAVKTIPSVKDKADWAIKWIE------------DKNSDFATRLVAFAC 168 >gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis] Length = 214 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 19/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L A ++ LLP+KY +E Y A ++W EV + D+ W+ LTDDER Sbjct: 1 KEPILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWRK---LTDDERH 57 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L FFA+S+ +V N+ + + PE R + Q+ EAVHS + ++ Sbjct: 58 FVSYVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIR 117 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ +P + KA WA+++ ++ S R + + C Sbjct: 118 DPDERDLLFHAVDTIPCVQKKAQWAMKWIESSSC-------------FAERLVAYAC 161 >gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] Length = 344 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 98/181 (54%), Positives = 130/181 (71%), Gaps = 4/181 (2%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 R D K+++N DVNQLLPLKY WAWE YL+ C NHWMP+EVPM D+ WKS + Sbjct: 9 TGRFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-D 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 +++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F Sbjct: 68 SISEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFL 127 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 YI+ SLGL+E E+FNMYRE+ +I+ K + +Q T+ L + + L + + Sbjct: 128 YIVDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDG--ETKTLAGKQQFLKNLVGY 185 Query: 193 L 193 Sbjct: 186 Y 186 >gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] Length = 323 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 6/153 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L D + P+++G W Y A + W EV + DL WK+ L +E Sbjct: 1 MSSEPLLVNNPDRFVIFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWKN---LKPEE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA S+ +V N+V + + PE R + Q E +HS + +I + Sbjct: 58 RRFISYILAFFAVSDGIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQT 168 D E LF+ R + + K+ WAL++ Sbjct: 118 IDDNNEKKRLFSSMRTMDCVRKKSEWALKWIND 150 >gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa Indica Group] Length = 233 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D W L+ DER + L FFA+S+ Sbjct: 1 MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERHFVSHVLAFFAASD 58 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + ++ + D+ E LF Sbjct: 59 GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 VP++ KA+WA+++ R R + F C Sbjct: 119 TVPAVRRKADWAMRWIDGGE-------------RFAERLVAFAC 149 >gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 19/183 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++ +L D + P+KY W+KY A +N W + + +D+ W+ L Sbjct: 10 RKEGEVEEPLLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWEK---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D ER IK L FFA+ + +V N V + PE R + Q E +HS T+ + Sbjct: 67 DDGERHFIKHVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVL 126 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + +D E L + R +P I KA WA+++ + +S TR + Sbjct: 127 IDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVA 173 Query: 192 FLC 194 F Sbjct: 174 FAA 176 >gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] Length = 321 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ Y W Y A + W EV + DL WK LTD+ER Sbjct: 2 EPLLVESNNRFVIFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWKK---LTDNERYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E L + + KA WA ++ + S R + F Sbjct: 119 VDEKNHLLKAIDTIDCVKEKAKWAEKWI------------LDKESSYGERLVAFAA 162 >gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83] gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83] Length = 321 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ Y W Y A + W EV + DL WK LTD+ER Sbjct: 2 EPLLVESNNRFVIFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWKK---LTDNERYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E L + I KA WA ++ S + +R + + F Sbjct: 119 VDEKNHLLKAIDTIDCIKEKAKWAEKWILDKES----TYGERLVAFAAVEGIFF 168 >gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB] Length = 229 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 D E LFN +P I KA WAL++ Q + Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQDADA 226 >gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 394 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 17/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ +L + + P+KY W+ Y + + W E+ + DL W +K + Sbjct: 65 KQEESNEPLLTPDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWNNK--MN 122 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++ER I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLI 182 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P I KA+WA+++ Q+ + R + F Sbjct: 183 ETYFKDPEEADFLFNAIDNIPFIRKKADWAIRWIQS------------EDALYAERLVAF 230 Query: 193 LC 194 Sbjct: 231 AA 232 >gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 320 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 6/153 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y W+ Y A + W E+ + DL ++ L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSS 171 E E LF+ +P++ KA WA ++ +S Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS 151 >gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis elegans] gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 381 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ ML + + PLK+ W Y A + W EV + D+ W+ NG DE+ Sbjct: 61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 117 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+ + E R + Q E +HS + +I + Sbjct: 118 FISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIR 177 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 DE E LFN E I KA+WAL++ +++ R + F Sbjct: 178 DETERNTLFNAVDEFEFIKKKADWALRWI------------SDKKASFAERLIAFAA 222 >gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] Length = 349 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN SD L P+ Y W+ Y A + W E+ + DL ++ L ++E+ Sbjct: 30 NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNENEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF+ +P++ KA WA ++ +S Sbjct: 147 DEKERLNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum] Length = 349 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN SD L P+ Y W+ Y A + W E+ + DL ++ L ++E+ Sbjct: 30 NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNENEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF+ +P++ KA WA ++ +S Sbjct: 147 DEKERLNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] Length = 394 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 17/182 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ +L + + P+KY W+ Y + + W E+ + DLA W +K + Sbjct: 65 KQEESNEPLLTKDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWNNK--MN 122 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++ER I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLI 182 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E LFN +P I KA+WA+++ Q + R + F Sbjct: 183 ETYFKDPEEADFLFNAIENIPFIREKADWAIRWIQ------------DEDALYAERLVAF 230 Query: 193 LC 194 Sbjct: 231 AA 232 >gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + L P+ Y W Y + W E+ + DL+ W K L DER I Sbjct: 6 TDEEGSRFSLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHKK--LNPDERHFISM 63 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG- 143 L FFA ++ +V N+ R ++ PE R + Q E++H T+ +I + D Sbjct: 64 VLAFFAGADGIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKV 123 Query: 144 --ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 LF+ + VPS+ KA+WA +Y + +S R + F Sbjct: 124 RERLFSAHATVPSVERKASWAQRYIGSKAS-------------FAERLVAFAA 163 >gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit [Bacteriovorax marinus SJ] Length = 322 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D L PLKY +E Y + W E+ D+ W+ L DE+ Sbjct: 2 DPILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWEK---LNKDEQHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ L Y + PE R + Q E +HS T+ +I + D Sbjct: 59 IKHILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKD 118 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 ELF+ P + KA+WA+++ Q+ + R + F Sbjct: 119 PKEKDELFHAVTHFPFVEKKADWAMKWMQS-------------KRSFAERLIAFAA 161 >gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545] Length = 322 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 19/174 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K+ W+ Y A + W E+ + DL W LT+ E+ I Sbjct: 1 MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ ++ + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 L VP++ KA WAL++ Q+ R + F C Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQSSEC-------------FAERLIAFAC 158 >gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces cerevisiae] Length = 399 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 23/179 (12%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT---EVPMQDDLALWKSKNGLTDD 77 ++ +LN + L P+KY W+ Y + W E+ + D+ W N + ++ Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAY---EASFWTAETAEEIDLSKDIHDWN--NRMNEN 129 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 130 ERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDT 189 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LFN +P I KA WAL++ Q + R + F Sbjct: 190 YIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFA 236 >gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae] gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16] Length = 365 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 18/185 (9%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + D+ +L + + PL++ W+ Y A + W EV + D+ W+ N Sbjct: 37 PKGNALDADEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMN 96 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 G DE+ I R L FFA+S+ +V N+ + E R + Q E +HS + Sbjct: 97 G---DEQYFISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYS 153 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +I + DE E LFN E I KA+WAL++ ++ R Sbjct: 154 KLIETYIRDEKERMKLFNAIFEFEFIKKKADWALRWI------------SDTKASFAERL 201 Query: 190 LRFLC 194 + F Sbjct: 202 IAFAA 206 >gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain H] gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium knowlesi strain H] Length = 349 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++ L Sbjct: 24 QKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---L 80 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ++E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 81 NENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIHSETYSLL 140 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 I + DE E LF+ +P++ KA WA ++ +S Sbjct: 141 IDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax SaI-1] gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative [Plasmodium vivax] Length = 349 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++ L Sbjct: 24 QKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---L 80 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 81 NDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLL 140 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 I + DE E LF+ +P++ KA WA ++ +S Sbjct: 141 IDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS 180 >gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain [Theileria annulata] gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain, putative [Theileria annulata] Length = 322 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + + + ++ +LN + L P+ Y WE Y A + W E+ D W Sbjct: 7 SEKMKALEAEEFILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHWHK- 65 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L DER I L FFA+S+ +V N+ L R + PE + + Q E +HS T+ Sbjct: 66 --LNKDERHFITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETY 123 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +I + DE E LF + ++ KANWA ++ +S + +R S + Sbjct: 124 SLLIENYVKDEAEKRRLFMAIETIDAVKDKANWAKKWITDENS-----FAERIVSNFKNK 178 Query: 189 SLRFL 193 + + Sbjct: 179 LINYY 183 >gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei] gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei] Length = 377 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 18/187 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E ++ +L + + PL++ W+ Y A + W EV + D+ W+ Sbjct: 47 EETEGNALDANEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEK 106 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 NG DE+ I R L FFA+S+ +V N+ + E R + Q E +HS Sbjct: 107 MNG---DEQYFISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEM 163 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + +I + DE E LFN E I KA+WA+++ +++ Sbjct: 164 YSKLIETYIRDEKERLTLFNAIFEFEFIKKKADWAMKWI------------SDKKASFAE 211 Query: 188 RSLRFLC 194 R + F Sbjct: 212 RLIAFAA 218 >gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299] gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299] Length = 324 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 19/174 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K W+ Y A + W E+ + D W + L D+E+ I Sbjct: 1 MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ +I + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + LF VP++ KA WAL++ Q+ R + F C Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQSSEC-------------FAERLVAFAC 158 >gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 360 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 6/162 (3%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + +S + E + + L A + L P++ W+ Y A + W E+ Sbjct: 33 LKDELEMSEYKRKELSGELQPEPYLVANPNRFVLFPIQEHDVWQMYKKAEASFWTAEELD 92 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DL W LTD+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 93 LVHDLNDWAK---LTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQIPEARCFYGFQ 149 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 E +HS + +I + D E L +P + K Sbjct: 150 IAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIETIPCVQKKH 191 >gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens] gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens] Length = 297 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 10/151 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + + E R + Q E +HS + +I + D E LFN +P + KA+W Sbjct: 58 SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 AL++ + + +R + + F Sbjct: 118 ALRWIGDKEA----TYGERVVAFAAVEGIFF 144 >gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi] gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi] Length = 338 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 19/170 (11%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 L PL Y WE Y + W EV + D+ W+ L +E+ IK L Sbjct: 25 NPHRFVLFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWEK---LNSNEQHFIKTVLA 81 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--- 144 FFA+S+ +V N+ + PE R + Q E +H+ + +I +L D+ E Sbjct: 82 FFAASDGIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNR 141 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 LF+ VPS+ KANWAL++ + + R L F C Sbjct: 142 LFHAIDTVPSVQKKANWALKWINSEN-------------LFAERLLAFAC 178 >gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c] gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c] Length = 269 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 10/151 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL+ W + L DDE+ IK L FFA+S+ +V N+V Sbjct: 1 MYKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + + E R + Q E VHS + +I + D E LFN +P I KA+W Sbjct: 58 SQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 AL++ + S+ + +R + + F Sbjct: 118 ALKWISSNSA----NFAERIVAFAAVEGIFF 144 >gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++ L Sbjct: 23 QKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---L 79 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 80 NDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLL 139 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 I + DE E LF+ +P++ KA WA ++ +S Sbjct: 140 IDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS 179 >gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 500 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ + WE Y A W EV + D++ W+ LT DER Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 + E LFN I AKA+W L++ ++P Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWISDHNAP 457 >gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 350 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 99/182 (54%), Positives = 127/182 (69%), Gaps = 2/182 (1%) Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 E KR+LN + DVNQL+PLKY WAWE YL+ C+N+WMP+EVPMQ D+ LWKS Sbjct: 13 EEAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKS- 71 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLRQAFEEAVH+HTF Sbjct: 72 NRLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTF 131 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 YI+ SL LD+ E+F+MY V SI AK + ++ T+ + F L + Sbjct: 132 HYIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTPEGVQTFLKNLIG 191 Query: 192 FL 193 F Sbjct: 192 FY 193 >gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima] Length = 300 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 10/151 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + D+A W+S L +E+ I L FFA+S+ +V N+V Sbjct: 1 MYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + + E R + Q E +HS + +I + D E LFN +P + KA+W Sbjct: 58 SKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 A+++ SS + +R + + F Sbjct: 118 AMRWINDDSS----SYAERVVAFAAVEGIFF 144 >gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus NW-LW] Length = 321 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L+++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LSNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN + I K+ WA ++ +++ R + F Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWISN------------KKASFGERLIAFAA 162 >gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus] Length = 321 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN + I K+ WA ++ +++ R + F Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWISN------------KKASFGERLIAFAA 162 >gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276] gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus gattii WM276] Length = 430 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 21/197 (10%) Query: 4 NTGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 N G P + + +++ +L L P+KY W+ Y A + W E+ Sbjct: 79 NKGRKPAGKDKMPMKFLEEEEEDILRESDSRFVLFPIKYNEIWQAYKRAQASFWTAEELD 138 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 DL W + +T+ ER I R L FFA+S+ +V NIV + E R + Q Sbjct: 139 FGHDLIDWHDR--MTEQERFFILRILAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQ 196 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 + E VHS T+ +I + D E LF +P I KA+WAL+Y Sbjct: 197 SMIEQVHSETYSLLIETYVRDAQEKDFLFRGMENIPCIKQKADWALKYITDEL------- 249 Query: 178 NKRRRSRILTRSLRFLC 194 TR + F C Sbjct: 250 ------PFRTRLVAFAC 260 >gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus] Length = 321 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN + I K+ WA ++ +++ R + F Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWISN------------KKASFGERLIAFAA 162 >gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva strain Muguga] gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative [Theileria parva] Length = 308 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+ Y WE Y A + W E+ D W L DER Sbjct: 7 EEFLLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHWH---RLNKDERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I + Sbjct: 64 FITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVK 123 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 DE E LF + ++ KANWA ++ +S Sbjct: 124 DEAEKRRLFMAIETIDAVKDKANWAKKWITDENS 157 >gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 409 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 18/167 (10%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y + W E+ + DL W + L D+ER I L FFA Sbjct: 93 RFSLFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFFA 150 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---LDEGELFN 147 ++ +V N+ R ++ PE R + Q E +H T+ +I S D LF Sbjct: 151 GADGIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLFA 210 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + +VPS+ KA WA +Y + + R + F Sbjct: 211 AHTKVPSVEKKARWAQRYIGS-------------DASFAERLVAFAA 244 >gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus salmonis] Length = 335 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 19/180 (10%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ +L + + P+ Y W Y A W EV + DL W L D Sbjct: 12 QEKNEIILTPNNSKYVMFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDWAK---LNKD 68 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N++ + E R + Q E +HS + +I + Sbjct: 69 EKHFISNVLAFFAASDGIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDT 128 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D+ E LFN + + KA WAL++ TR + F Sbjct: 129 YIEDDKEKDKLFNSILTIECVKKKAEWALRWITG-------------DKPFATRLVAFAA 175 >gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 581 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ + WE Y A W EV + D++ W+ LT DER Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 + E LFN I AKA+W L++ ++P Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWISDHNAP 457 >gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] Length = 387 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 9/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P+KY W Y + + W E+ + D W++K + DER Sbjct: 63 NEPLLREDPSRRTVFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWENK--MNKDERF 120 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I + Sbjct: 121 FISRVLAFFAASDGIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFK 180 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN + I KA+WA+++ Q + + +R + + F Sbjct: 181 DPKEADFLFNAIDNIKYIGEKADWAIRWIQDEEA----LFAERLVAFAAIEGIFF 231 >gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 336 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN +PSI KA WA ++ + + TR + F C Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS-------------DTSFDTRCVAFAC 185 >gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus xanthus DK 1622] gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus xanthus DK 1622] Length = 349 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 7/187 (3%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +LN ++ L P+ Y +E Y +A N W EV DL + Sbjct: 1 METPRRSARSTEAMLLNPGLNL-TLRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLR 59 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 SK +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H Sbjct: 60 SK--MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQ 117 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + ++ + D E F +PSI KA + +++ ++ RR L Sbjct: 118 FYLTLLDTYVPDPAERAMAFAAVDNIPSIQRKAQFCMKWMDSIQGLDTLQTKAHRRQ-FL 176 Query: 187 TRSLRFL 193 + F Sbjct: 177 LNLICFA 183 >gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi chabaudi] gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium chabaudi chabaudi] Length = 349 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 9/177 (5%) Query: 1 MANNTGLSPIQAGEKRVNVD---DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 ++ +T S + + + ++++LN S L P+ Y W Y A + W Sbjct: 7 ISKSTSFSKQEKEFSDLQKNKECNEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAE 66 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL ++ L +E+ IK L FFA+S+ +V N+ R + E +++ Sbjct: 67 EIDLSSDLKDFEK---LNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFY 123 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 Q E +HS T+ +I + DE E LF+ +P+I KA WA ++ +S Sbjct: 124 AFQIAVENIHSETYSLLIDNYIRDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS 180 >gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus] Length = 321 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DL+ WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWKK---LNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN + I K+ WA ++ +++ R + F Sbjct: 119 TKEKEYLFNAIETMDFIKKKSEWARKWISN------------KKASFGERLIAFAA 162 >gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis T2Bo] gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative [Babesia bovis] Length = 339 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + N L P+KY WE Y A + W E+ + DL W LT+ E Sbjct: 19 SEEFILVEDPNRNGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDW---GTLTEGEH 75 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 IK L FFA+S+ +V N+ L + + PE + + Q E +HS T+ +I Sbjct: 76 HFIKNVLAFFAASDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYI 135 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 DE E LF + ++ KA WA ++ + +R + + F Sbjct: 136 RDEAEKDRLFRAIETIDAVRDKAIWAAKWMN-----DEKSFAERIVAYAAVEGIFF 186 >gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor] Length = 321 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISS 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN + I K+ WA ++ +++ R + F Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWISN------------KKASFGERLIAFAA 162 >gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 2] Length = 324 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 18/179 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L + + P+ W+ Y + W P E+ D+ W N L DE Sbjct: 4 KNTEPLLTEDDNRFVMFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTDE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFASS+ +V N+ L + E R + Q E +HS T+ +I S Sbjct: 61 QYFIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSY 120 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E LF+ P I K +WA+++ Q ++S TR + F C Sbjct: 121 IKDSDEKHKLFHSLEHFPCIKKKGDWAMKWIQ------------DKKSSFATRLVAFAC 167 >gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str. 17XNL] gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii] Length = 349 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++LN S+ L P+ Y W Y A + W E+ + DL ++ L Sbjct: 24 QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---L 80 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 81 NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 I + DE E LF+ +P+I KA WA ++ +S Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS 180 >gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 330 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN +PSI KA WA ++ + + TR + F C Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS-------------DTSFDTRCVAFAC 185 >gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens] Length = 393 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 19/170 (11%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 S L P+K W Y A + W EV + D W+ L + ER + R L Sbjct: 78 DSSRFTLFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLA 134 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--- 144 FFA+S+ +V N+V + ++ PE R + Q E VH + ++ + D GE Sbjct: 135 FFAASDGIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREA 194 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 L + +P + AKA+WA+++T + + R L F Sbjct: 195 LTRAHDLMPCVKAKADWAMKWTAS-------------DAPYAARLLAFAA 231 >gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 54 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 110 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 111 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 170 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN +PSI KA WA ++ + + TR + F C Sbjct: 171 KEEQTYLFNAIENIPSIRKKALWAQKWIAS-------------DTSFDTRCVAFAC 213 >gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN +PSI KA WA ++ + + TR + F C Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS-------------DTSFDTRCVAFAC 185 >gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 322 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 6/153 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y + Y A W E+ DL ++ L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFEK---LNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ ++ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSS 171 E E LF+ +P++ KA WA ++ +S Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS 151 >gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM 20547] gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM 20547] Length = 365 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 6/163 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E + A N W E+ + DLA +K L+ ER ++ R + FFA+ Sbjct: 43 TLRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLADLHNK--LSPAERHLVSRLVAFFATG 100 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149 +++VANN+VL +Y H+++PE R YL RQ FEEAVH + ++ + DE E F + Sbjct: 101 DTIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAV 160 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +PSI KA + + ++ + K +R + L + F Sbjct: 161 ENIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICF 202 >gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 345 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+ Y W Y + W V ++ DL W +TD+ER Sbjct: 38 EPLLKDNPRRFVIFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDW---MRMTDEERHF 94 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L F A+S +V+ N+V + + E R + Q E +HS + +I + D Sbjct: 95 ISYILAFLAASNGIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLIDTYIKD 154 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E L N +P + A+W L++ ++ R + F Sbjct: 155 PKEKETLINATETMPCVKKMADWVLKWI------------TDSKATFGERLVTFAA 198 >gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40] gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 368 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 2/190 (1%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 G + + V DKR++N +D+NQL P KY WAW+ +++A NHW P ++ M D Sbjct: 27 AGQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQD 86 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + +K LT+ ER M + L + +S+ L NI LA+ ++ PE + Y RQ +EE Sbjct: 87 VYDYKH--NLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEE 144 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 A+H+ T+Q+ I +LGLD+GE++N YR VP I AK A + +++ + + + Sbjct: 145 ALHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMANRRLESILRSDIDLTDPDQLNN 204 Query: 185 ILTRSLRFLC 194 + + F Sbjct: 205 FILAYIFFAA 214 >gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans var. neoformans JEC21] gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 430 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 73/175 (41%), Gaps = 18/175 (10%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L L P+KY W+ Y A + W E+ DL W + +T+ ER I Sbjct: 101 DILRESESRFVLFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWHDR--MTEQERFFI 158 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 R L FFA+S+ +V NIV + E R + Q+ E VHS T+ +I + D Sbjct: 159 LRILAFFAASDGIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDA 218 Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LF +P I KA+WAL+Y TR + F C Sbjct: 219 QEKDFLFRGMTNIPCIKQKADWALKYITDEL-------------PFRTRLVAFAC 260 >gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] Length = 352 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 2/186 (1%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + VNVDDKR++N +DVNQL P KY WAWE +++A NHW P +V M D+ + Sbjct: 15 ALNSSVAPVNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVNMSQDVHDY 74 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEAVH+ Sbjct: 75 HHR--LNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEAVHT 132 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 T+Q+ I +L LD+GE++N YR VP I K A + + NK + Sbjct: 133 WTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKDDLQEFIMS 192 Query: 189 SLRFLC 194 L F Sbjct: 193 YLFFAA 198 >gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] Length = 339 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P+ Y +E Y SA N W EV D+ + +TD ER +++R + FFA+ Sbjct: 18 TLRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLRK---MTDAERHLVQRLVAFFATG 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMY 149 +S+VANN+VL +YRH++ PE R YL RQ +EEA+H + ++ + D F Sbjct: 75 DSIVANNLVLNLYRHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPEDRHRAFAAV 134 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLCRV 196 +PSI KA++ +++ ++ S RR R L + F V Sbjct: 135 ENIPSIRQKADFCMRWLDSVESLGRLDTRAERR-RFLLNLICFAACV 180 >gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 251 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 19/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LFN +PSI KA WA ++ + + TR + F C Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS-------------DTSFDTRCVAFAC 185 >gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] Length = 352 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 99/187 (52%), Gaps = 2/187 (1%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ Sbjct: 14 AAATGGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHD 73 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + + LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H Sbjct: 74 YHHR--LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALH 131 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187 + T+Q+ I +L LD+ E++N YR VP I K A + + N + Sbjct: 132 TWTYQHCIETLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVM 191 Query: 188 RSLRFLC 194 L F Sbjct: 192 SYLFFAA 198 >gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] Length = 356 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 7/182 (3%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R + + L L P++Y +E+Y A N W EV + D+A LT Sbjct: 18 RADAPHSKNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LT 74 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ Sbjct: 75 PAEQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLL 134 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D + F+ E+PSI KA + ++ ++ R R L + F Sbjct: 135 DTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVEK-IERLETAADRRRFLLNLICF 193 Query: 193 LC 194 Sbjct: 194 AA 195 >gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] Length = 338 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + ++K +L+ ++ L P++Y +E+Y A N W EV + D+A L+ Sbjct: 3 STEEKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPG 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D + F+ E+PSI KA + ++ ++ K R R L + F Sbjct: 119 YLPDPDDRAAAFDAVEEIPSIREKAQFCFRWMDSVEKID-RLETKADRRRFLLNLICFAA 177 >gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa] gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa] Length = 350 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 27/192 (14%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 +G R + + +L + + P+K+ W+ Y A + W EV + Sbjct: 27 PPSGAPERAITTSRCESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLS 86 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D W++ L D ER I R L FFA+S+ +V N+V + + PE R + Q Sbjct: 87 KDYRDWEN---LNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIM 143 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 E VHS + FN E + KA+WAL + + +P Sbjct: 144 IENVHSEM-SLL-----------FNAIYEFEFVKKKADWALCWIADIKAP---------- 181 Query: 183 SRILTRSLRFLC 194 R + F Sbjct: 182 --YAERLIAFAA 191 >gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium HP15] Length = 352 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 2/193 (1%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M Sbjct: 8 PKTESRAAHPGAPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNM 67 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + + LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ Sbjct: 68 AQDVHDYHHR--LTAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQV 125 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 +EEA+H+ +Q+ I +L LD+ E++N YR VP+I K A + P + NK Sbjct: 126 YEEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDD 185 Query: 182 RSRILTRSLRFLC 194 + L F Sbjct: 186 LQEFIMSYLFFAA 198 >gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 15998] gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 11379] gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] Length = 338 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 8/180 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +DK +L+ ++ L P++Y +E+Y A N W EV + D+A L+ Sbjct: 3 TTEDKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPG 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D + F+ E+PSI KA + ++ ++ K R R L + F Sbjct: 119 YLPDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVEK-IERLETKADRRRFLLNLICFAA 177 >gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Streptomyces venezuelae ATCC 10712] Length = 338 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 7/181 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ +D++ L L P++Y +E+Y A N W EV + D+A LT Sbjct: 1 MSTNDEKNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LTP 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ Sbjct: 58 GEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLD 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + D + F +PSI KA + ++ ++ + R R L + F Sbjct: 118 TYLPDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVEKID-RLETQADRRRFLLNLICFA 176 Query: 194 C 194 Sbjct: 177 A 177 >gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] Length = 347 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A LT ER +I R + FFA+ Sbjct: 26 TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAK---LTPAERHLIGRLVAFFATG 82 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 83 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 142 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ RR R L + F Sbjct: 143 ENIPSIREKAEFCFRWMDSVERLDRLETRSDRR-RFLLNLICFAA 186 >gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] Length = 355 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + D+ +L+ ++ L P++Y +E+Y A N W EV + D+A L++ E Sbjct: 21 MTDQNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSEGE 76 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 77 QHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTY 136 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D + F +PSI KA + ++ ++ ++ R R L + F Sbjct: 137 LPDPADRVAAFAAVENIPSIREKAEFCFKWMDSVEKLD-RLESQADRRRFLLNLICFAA 194 >gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] Length = 297 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 10/151 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + + PE R + Q E VHS + +I + D + LFN +P + KA+W Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 AL++ S + +R + + F Sbjct: 118 ALRWIADRKS----TFGERVVAFAAVEGIFF 144 >gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella aurantiaca DW4/3-1] gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 336 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 7/174 (4%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +LNA ++ L P+ Y +E Y +A N W EV DL +SK +TD ER +I Sbjct: 1 MLLNAGMNL-TLRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLI 57 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D Sbjct: 58 HRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDP 117 Query: 143 G---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + F +PSI KA + L++ ++ + + R R L + F Sbjct: 118 ADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFA 170 >gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] Length = 338 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + D K +L+ ++ L P++Y +E+Y A N W EV + D+A LT Sbjct: 3 STDQKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LTPA 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D + F+ E+PSI KA + ++ + + R R L + F Sbjct: 119 YLPDPDDRAAAFDAVEEIPSIREKAQFCFKWINEVEKLD-RLETQADRRRFLLNLICFAA 177 >gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 297 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W E+ + +DL W + LT +ER + L FFA+S+ +V N+ Sbjct: 1 MYKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 +++PE R + Q E +HS T+ +I + D E L N VP + KA+W Sbjct: 58 STEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 AL++ ++ + +R + + F Sbjct: 118 ALKWCDAGNA----SFAERMIAFAAVEGIFF 144 >gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] Length = 340 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ Sbjct: 19 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPGEQHMIGRLVAFFATG 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 76 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAV 135 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E+PSI KA + ++ ++ + R R L + F Sbjct: 136 EEIPSIREKAQFCFKWMDSVEEID-RLETQADRRRFLLNLICFAA 179 >gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] Length = 408 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 18/181 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + + +L + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 88 VEEEYEPLLAPTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + + E R + Q E VH T+ +I Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLID 204 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LF + VP I KA+WA+++ T S R F Sbjct: 205 KYIKDGAEKKQLFEAIQTVPCIQKKADWAMKWFDTKS------------RSFAERLFAFA 252 Query: 194 C 194 C Sbjct: 253 C 253 >gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces jumonjinensis] Length = 322 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+ LT E+ +I R + FFA+ Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTDLAK---LTPGEQHLIGRLVAFFATG 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 134 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ + R R L + F Sbjct: 135 ENIPSIREKAQFCFKWMDSVEKID-QLETQADRRRFLLNLICFAA 178 >gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] Length = 331 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +++Y A N W EV + DL + L+ ER ++ R + FFA+ Sbjct: 10 TLRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLTD---LDRLSAAERHLVSRLVAFFATG 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 67 DTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERTEAFAAV 126 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ +L + + RR+ L + F Sbjct: 127 ENIPSIRRKAEFCFRWIDSLGNLQRLESREDRRA-FLLNLICFAA 170 >gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis BCW-1] Length = 340 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +++Y A N W EV + D+A L+ E+ +I R + FFA+ Sbjct: 19 TLRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVADLAK---LSPGEQHLIGRLVAFFATG 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 76 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 135 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ K R R L + F Sbjct: 136 ENIPSIREKAEFCFRWIDSVDKID-RLETKDERRRFLLNLICFAA 179 >gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] Length = 323 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+++ W Y A + W EV + D+A W+ L+ DE+ Sbjct: 4 EPLLVESGIRFVIYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWE---RLSADEKKF 60 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS T+ +I + D Sbjct: 61 ISTVLAFFAASDGIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKD 120 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E LF+ + I KA+WAL++ ++SP R + F Sbjct: 121 ERERLVLFDAIKNFEFIKKKADWALRWISDMTSP------------FAHRLVAFAA 164 >gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] Length = 404 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 2/193 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + T + + G V +DK+++N +D+NQL P KY WAWE +L+A NHW P ++ Sbjct: 59 IPEQTNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDIN 118 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ + K LT +ER + L + +S+ + NI LA+ +S PE + Y RQ Sbjct: 119 MAQDVHDFHHK--LTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQ 176 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 +EE++H+ T+Q+ I +LGLD+GE++N YR VP I AK A + ++ P ++ Sbjct: 177 VYEESLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRD 236 Query: 181 RRSRILTRSLRFL 193 L + F Sbjct: 237 ELHNFLMSYIFFA 249 >gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus ATCC 33331] Length = 338 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++K +L+ ++ L P++Y +E+Y A N W EV + D+A L+ E+ Sbjct: 5 ENKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPGEQ 60 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 61 HMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 120 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D + F+ E+PSI KA + ++ ++ K R R L + F Sbjct: 121 PDPEDRAAAFDAVEEIPSIREKAQFCFRWMDSVEK-IERLETKADRRRFLLNLICFAA 177 >gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] Length = 408 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 18/181 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + + +L + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 88 VGEEYEPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 204 Query: 137 SLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D + +LF + VP I KA WA+++ T S R F Sbjct: 205 KYIKDGSEKKQLFEAIQTVPCIEKKAKWAMKWFDTKS------------RSFAERLFAFA 252 Query: 194 C 194 C Sbjct: 253 C 253 >gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] Length = 330 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 1/167 (0%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 + D N++LP+ Y WA E Y + N+W P EVPM DD+ W++ + L+ +ER +++ NL Sbjct: 8 SHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWEN-DELSSEERQLVEWNL 66 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 GFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG D L+ Sbjct: 67 GFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYLY 126 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 MY +P+I AK + + TQ + P F + L + F Sbjct: 127 GMYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFY 173 >gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella virus 1] gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to tobacco RR small subunit, corresponds to Swiss-Prot Accession Number P49730 [Paramecium bursaria Chlorella virus 1] Length = 324 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 6/153 (3%) Query: 19 VDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + + +L P++Y W+ Y A W EVP+ D+ W+ K L DD Sbjct: 2 ANQEPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK LGFFA S+ +V N+ ++ PE RQ+ Q F E++HS + +I + Sbjct: 60 ERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDA 119 Query: 138 LGLDE---GELFNMYREVPSITAKANWALQYTQ 167 L DE ELF+ +P++ KA WA ++ + Sbjct: 120 LISDEQERNELFDAIENIPAVHNKAKWAQKWLE 152 >gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] Length = 340 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ Sbjct: 19 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPGEQHMIGRLVAFFATG 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 76 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 135 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA++ ++ ++ S + R R L + F Sbjct: 136 ENIPSIREKASFCFKWMDSVESID-RLETQADRRRFLLNLICFAA 179 >gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] Length = 350 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 14/196 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A ++ GE+ + +D L L P++Y ++++ A N W EV + Sbjct: 5 AETRTVTAATTGERHMLLDPGMDL-------TLRPMRYPHFFDRFKEAIKNTWTVEEVDL 57 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA L+ ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ Sbjct: 58 HSDLADLAK---LSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQL 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFHYWN 178 FEEAVH + ++ + DE E F + +PSI KA + ++ ++ Sbjct: 115 FEEAVHVQFYLNLLDTYVPDEKERFAAFAAVENIPSIARKAEFCFRWIDSIFE-LRELRT 173 Query: 179 KRRRSRILTRSLRFLC 194 + R L + F Sbjct: 174 RADRRAFLLNLICFAA 189 >gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] Length = 389 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 18/181 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + + +L + + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 69 VEEEYEPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 125 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 185 Query: 137 SLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D ELF + VP I KA WA+++ T S R F Sbjct: 186 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKWFDTKS------------RSFAERLFAFA 233 Query: 194 C 194 C Sbjct: 234 C 234 >gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain [Streptomyces clavuligerus ATCC 27064] gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] Length = 339 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+ Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVPDLAK---LSPGEQHLIGRLVAFFATG 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAV 134 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ + R R L + F Sbjct: 135 ENIPSIREKAQFCFRWMDSVEKLD-QLETQADRRRFLLNLICFAA 178 >gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens] Length = 297 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 10/151 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + + PE R + Q E VHS + +I + D + LFN +P + KA+W Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 AL++ S + +R + + F Sbjct: 118 ALRWIADRKS----TFGERVVAFAAVEGVFF 144 >gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo sapiens] gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens] Length = 297 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 10/151 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + + PE R + Q E VHS + +I + D + LFN +P + KA+W Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 AL++ S + +R + + F Sbjct: 118 ALRWIADRKS----TFGERVVAFAAVEGVFF 144 >gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] Length = 345 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y +A N W EV + D+A LT E+ +I R + FFA+ Sbjct: 24 TLRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVADLAK---LTPGEQHLIGRLVAFFATG 80 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 81 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRADAFAAV 140 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ + +K R R L + F Sbjct: 141 ENIPSIREKAEFCFKWIDEVEKID-RLESKADRRRFLLNLICFAA 184 >gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces ghanaensis ATCC 14672] Length = 339 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPAEQHLIGRLVAFFATG 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 134 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + + ++ + R R L + F Sbjct: 135 ENIPSIREKAEFCFTWMDSVEKLD-RLQTQADRRRFLLNLICFAA 178 >gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] Length = 341 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ Sbjct: 20 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPAEQHLIGRLVAFFATG 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 77 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 136 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA++ ++ ++ + R R L + F Sbjct: 137 ENIPSIREKASFCFKWMDSVEKLD-RLETQADRRRFLLNLICFAA 180 >gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] Length = 324 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%) Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L+ P++Y W+ Y A W EVP+ D+ W+ K L DDER Sbjct: 5 EPILSDNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDDERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK LGFFA S+ +V N+ ++ PE RQ+ Q F E++HS + +I +L Sbjct: 63 FIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALIS 122 Query: 141 DE---GELFNMYREVPSITAKANWALQYTQ 167 DE ELF+ +P++ KA WA ++ + Sbjct: 123 DEQERNELFDAIENIPAVHNKAKWAQKWLE 152 >gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] Length = 338 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 8/181 (4%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ + K +L+ ++ L P++Y +E+Y A N W EV + D+A LT Sbjct: 2 MSSETKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LTP 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ Sbjct: 58 AEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLD 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + D + F +PSI KA + ++ + K R R L + F Sbjct: 118 TYLPDPEDRTAAFAAVENIPSIREKAEFCFKWINEVEKLD-RLETKADRRRFLLNLICFA 176 Query: 194 C 194 Sbjct: 177 A 177 >gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] Length = 340 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ Sbjct: 19 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPAEQHLIGRLVAFFATG 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 76 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 135 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + + ++ + R R L + F Sbjct: 136 ENIPSIREKAEFCFTWMDSVEKLD-RLQTQADRRRFLLNLICFAA 179 >gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] Length = 338 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 8/175 (4%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 R+L+ D+ L P++Y +E++ +A N W EV + DL + TD ER +I Sbjct: 8 RLLDPGMDL-TLRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLATF---TDSERHLI 63 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH + ++ + D Sbjct: 64 NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVHVQFYLTLLDTYLPDP 123 Query: 143 G---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + F +PSI KA + ++ T+ R L + F Sbjct: 124 EDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAA 177 >gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces albus J1074] gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] Length = 350 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ Sbjct: 29 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPGEQHLIGRLVAFFATG 85 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 86 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRADAFAAV 145 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ ++ R + L + F Sbjct: 146 ENIPSIREKAEFCFRWMDSVDKLD-QLESQADRRKFLLNLICFAA 189 >gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 1] Length = 324 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 18/177 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + P+ W+ Y + W E+ DL W N L +E+ Sbjct: 6 NEPLLTEDDNRFVMFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQY 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFASS+ +V N+ L + E R + Q E +HS T+ +I S Sbjct: 63 YIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIK 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 DE E LF+ P I K WA+++ ++S TR + F C Sbjct: 123 DENEKNKLFHSLEHFPCIEKKGKWAMKWIN------------DKKSNFSTRLVAFAC 167 >gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] Length = 340 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 7/182 (3%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 V + D + L L P++Y +++Y A N W EV + D+ L+ Sbjct: 2 PVTMSDTKNLLDPGFELTLRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVTDLAK---LS 58 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ +I R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ Sbjct: 59 PGEQHLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLL 118 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D + F +PSI KA + ++ ++ K+ R R L + F Sbjct: 119 DTYLPDPDDRAAAFAAVENIPSIREKAEFCFRWMDSVEKID-RLETKQDRRRFLLNLICF 177 Query: 193 LC 194 Sbjct: 178 AA 179 >gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] Length = 348 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 18/163 (11%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ K L DDER IK LGFFA S+ Sbjct: 43 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 100 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E LF+ Sbjct: 101 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 160 Query: 152 VPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +P++ KA WA ++ + R + ++C Sbjct: 161 IPAVGKKAAWAQKFLS-------------QDKSFAERLVAWVC 190 >gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] Length = 352 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 3/193 (1%) Query: 3 NNTGLSPIQ-AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NT P G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M Sbjct: 8 PNTQTRPAAHEGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNM 67 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + + L+ E+ + + L + +S+ L NI LA+ +S PE + Y RQ Sbjct: 68 AQDVHDYHHR--LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQV 125 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRR 181 +EEA+H+ +Q+ I +L LD+ E++N YR VP+I K A + + +K Sbjct: 126 YEEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDD 185 Query: 182 RSRILTRSLRFLC 194 + L F Sbjct: 186 LQEFIMSYLFFAA 198 >gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG] gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF] Length = 345 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ Sbjct: 24 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSDLAK---LTPGEQHLIGRLVAFFATG 80 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 81 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 140 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI AKA + ++ + RR R L + F Sbjct: 141 ENIPSIRAKAEFCFKWIDEVEKIDRLESRSDRR-RFLLNLICFAA 184 >gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 341 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A L+ +E+ +I R + FFA+ Sbjct: 20 TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAK---LSPEEQHLIGRLVAFFATG 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 77 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 136 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ + R R L + F Sbjct: 137 ENIPSIREKAEFCFRWMDSVEKLD-RLETQADRRRFLLNLICFAA 180 >gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] Length = 356 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 V R+L+ + + L P+ Y + +Y A N W EV DL + G Sbjct: 16 TADVIARPPRLLDPGTCL-TLRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMG 74 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 ER +I+R + FFA+ +S+VANN+VL++YRHL+ PE R YL RQ +EEA+H + Sbjct: 75 --PAERHLIQRLVAFFATGDSIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLT 132 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 ++ + D + F +PSI KA + L++ T+++ RR L + Sbjct: 133 LLDTYVPDPDQRHAAFAAVETIPSIRRKAEFCLRWQDTVAAIPRLDGPAHRRQ-FLLNLI 191 Query: 191 RFLC 194 F Sbjct: 192 CFAA 195 >gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 196 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + E LFN +PSI KA WA ++ + +S Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTS 175 >gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] Length = 345 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ Sbjct: 24 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSDLAK---LTPGEQHLIGRLVAFFATG 80 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 81 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 140 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI AKA + ++ + RR R L + F Sbjct: 141 ENIPSIRAKAEFCFKWIDEVEKIDRLESQSDRR-RFLLNLICFAA 184 >gi|227541|prf||1706181A ribonucleotide reductase Length = 290 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 10/144 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 + W EV + D+ W+S L +ER I L FFA+S+ +V N+V + + Sbjct: 1 SFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT 57 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 E R + Q E +HS + +I + D E LFN +P + KA+WAL++ Sbjct: 58 EARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGD 117 Query: 169 LSSPSFHYWNKRRRSRILTRSLRF 192 + + +R + + F Sbjct: 118 KEA----TYGERVVAFAAVEGIFF 137 >gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces lividans TK24] gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] Length = 343 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 8/184 (4%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V+ K +L+ ++ L P++Y +E+Y A N W EV + D+A Sbjct: 4 ETPVHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAK--- 59 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + Sbjct: 60 LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 ++ + D + F +PSI KA + ++ ++ S K R R L + Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLI 178 Query: 191 RFLC 194 F Sbjct: 179 CFAA 182 >gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] Length = 344 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 7/184 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +D + L L P++Y ++++ A N W EV + DLA Sbjct: 4 TSEPRLDTRHTLLDPGMDLTLRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLADLA---R 60 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + Sbjct: 61 LSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLN 120 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 ++ + DE E F +PSI KA + ++ ++ + R L + Sbjct: 121 LLDTYVPDERERFAAFAAIENIPSIRRKAEFCFRWIDSIFE-LRELKTREDRRAFLLNLI 179 Query: 191 RFLC 194 F Sbjct: 180 CFAA 183 >gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] Length = 348 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 8/178 (4%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + +L+ D+ L P++Y +E++ +A N W EV + DLA + L+ E Sbjct: 15 ERHALLDPGMDL-TLRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLADLRK---LSPAEH 70 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 ++KR + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 71 HLVKRLVAFFATGDTIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYI 130 Query: 140 LDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 DE E F +PSI KA++ ++ ++ R L + F Sbjct: 131 TDERERAEAFAAIENIPSIKRKADFCFRWIDSIFD-LRELRTAADRRSFLLNLICFAA 187 >gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 331 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y +A N W EV + DLA +T +ER +I R + FFA+ Sbjct: 10 TLRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLADLA---RMTPEERHLINRLVAFFATG 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H++ PE R YL RQ FEEAVH + ++ + D E F Sbjct: 67 DSIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERVKAFAAV 126 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ +L + RR+ L + F Sbjct: 127 EHIPSIRNKAEFCFRWIDSLGGLDRLESREDRRA-FLLNLICFAA 170 >gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella virus MT325] Length = 326 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 18/163 (11%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ K L DDER IK LGFFA S+ Sbjct: 21 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 78 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E LF+ Sbjct: 79 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 138 Query: 152 VPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +P++ KA WA ++ + R + ++C Sbjct: 139 IPAVGKKAAWAQKFLS-------------QDKSFAERLVAWVC 168 >gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] Length = 347 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L++ ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 67 DYKQ---LSEPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++ P + + + Y ++ + + K + Sbjct: 123 HSQSYSYMLDTICEPQERNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETFVKTLVA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] Length = 322 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 75/181 (41%), Gaps = 18/181 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + +L + + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 2 VEEEYDPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I Sbjct: 59 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 118 Query: 137 SLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D ELF + VP I KA WA+++ T S R F Sbjct: 119 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKWFDTKS------------RSFAERLFAFA 166 Query: 194 C 194 C Sbjct: 167 C 167 >gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] Length = 340 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 8/183 (4%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + + K +L+ ++ L P++Y +E+Y A N W EV + D+ L Sbjct: 2 PVMTSEAKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTDLAK---L 57 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + + Sbjct: 58 SPAEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTL 117 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 + + D + F+ +PSI KA + ++ + ++ R R L + Sbjct: 118 LDTYLPDPQDRAAAFDAVENIPSIREKAEFCFRWINEVEKLD-RLESQADRRRFLLNLIC 176 Query: 192 FLC 194 F Sbjct: 177 FAA 179 >gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 241 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 6/196 (3%) Query: 2 ANNTGLSPIQAGE----KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 A T +P+ K VN DDKR++N +DVNQL P KY WAWE +L+A NHW P Sbjct: 29 AVQTEATPLPVAAPLDTKPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPL 88 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 ++ M D+ + K LT +ER + + L + +S+ L NI LA+ +S PE + Y Sbjct: 89 DINMAQDVHDYHHK--LTLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQ 146 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 RQ +EEA+H+ T+Q+ I ++GLD+ E++N YR VP I K A + ++ Sbjct: 147 ARQVYEEALHTWTYQHCIETIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLS 206 Query: 178 NKRRRSRILTRSLRFL 193 N+ L L F Sbjct: 207 NRDELENFLMAYLFFA 222 >gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC 2396] gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC 2396] Length = 405 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 104/187 (55%), Gaps = 4/187 (2%) Query: 9 PIQAGEK--RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P + +K VN DDKR++N +D+NQL P KY WAWE +L+A NHW P ++ M D+ Sbjct: 66 PEEVPQKLDPVNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVY 125 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + K LT +E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EE++ Sbjct: 126 DYHHK--LTLEEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESL 183 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 H+ T+Q+ I ++GLD+ E++N YR P+I K + L P + N+ + Sbjct: 184 HTWTYQHCIETIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFV 243 Query: 187 TRSLRFL 193 + F Sbjct: 244 MAYIFFA 250 >gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] Length = 346 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y ++ + N W EV Q DL K + LT E I+R + FFA+ Sbjct: 24 TLRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATG 81 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + + E F Sbjct: 82 DSIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDNYIPEPEERNAAFAAV 141 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI+ KA++ +++ ++ K R + L + F Sbjct: 142 ENIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAA 185 >gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces coelicolor A3(2)] gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] Length = 343 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 8/184 (4%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + K +L+ ++ L P++Y +E+Y A N W EV + D+A Sbjct: 4 ETPAHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAK--- 59 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + Sbjct: 60 LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 ++ + D + F +PSI KA + ++ ++ S K R R L + Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLI 178 Query: 191 RFLC 194 F Sbjct: 179 CFAA 182 >gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] Length = 330 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 107/168 (63%), Gaps = 1/168 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + D N++LP+ Y WA + Y N+W+P E+PMQ+D+A W + + L+D E+ +++ N Sbjct: 7 DTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQW-NGDALSDSEKQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + MY VPSI K + + T+ L P F + +L + F Sbjct: 126 YGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFY 173 >gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] Length = 358 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 18 KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 77 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L++ ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 78 DYKQ---LSEPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 133 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++ P + + + Y ++ + + K + Sbjct: 134 HSQSYSYMLDTICEPQERNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETFVKTLVA 193 Query: 184 RILTRSLRFL 193 + + F Sbjct: 194 NYILEGIYFY 203 >gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] Length = 325 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 18/163 (11%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y ++ Y A W EV + D+ W+ K L DDER IK LGFFA S+ Sbjct: 20 FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWREK--LNDDERHFIKHILGFFAGSDG 77 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+ +++P R + Q + E+VHS + ++ +L DE E LF Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137 Query: 152 VPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +P++ KA WA +Y R R + ++C Sbjct: 138 IPAVGKKAAWASKYFS-------------RDRSFAERLVAWVC 167 >gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3] gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3] gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3] gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3] Length = 335 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + L +++ W Y A ++W E+ + D A W+S L+++E+ Sbjct: 14 EPLLAPSNSRFTLDVIEHQDIWSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFF 70 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + + E R + Q E VHS + ++ + LD Sbjct: 71 LKNILAFFAASDGIVNENLATRFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILD 130 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E LF +P I KA+WAL + ++ + + +R + + F Sbjct: 131 PVERNGLFKAMETMPCIKKKADWALNWIESPDA----TFGERLVAFTAVEGIFF 180 >gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera] Length = 312 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 19/153 (12%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + D+ W+S L++ E+ I L FFA+S+ +V N+ Sbjct: 1 MYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + PE R + Q E +HS + ++ + D E LFN + + KA W Sbjct: 58 LHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 AL + Q+ + R + F C Sbjct: 118 ALDWIQSST-------------LFAERLIAFAC 137 >gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 183 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173 + E LFN +PSI KA WA ++ + +S Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD 177 >gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] Length = 339 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 5/177 (2%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+ML L P++Y ++ Y +A N W E+ Q D+ SK ++ ER Sbjct: 5 PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + Sbjct: 63 LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E F+ + SI KA++ ++ ++ S + ++RR +L + C Sbjct: 123 DPEERAKAFSAVENIDSIKKKADFCFKWIDSIQSLTRIETREQRRQFLLNQICFAAC 179 >gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated [Chlamydophila pneumoniae LPCoLN] Length = 159 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 92/147 (62%), Positives = 114/147 (77%), Gaps = 2/147 (1%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSI 155 HTF YI SLGLDEGE+FN Y E SI Sbjct: 125 HTFLYICESLGLDEGEVFNAYNERASI 151 >gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] Length = 339 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 5/177 (2%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+ML L P++Y ++ Y +A N W E+ Q D++ SK ++ ER Sbjct: 5 PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHSK--MSPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + Sbjct: 63 LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E F + SI KA++ ++ ++ + + RR +L + C Sbjct: 123 DPDERVKAFAAVENIDSIKKKADFCFKWIDSIQNLKRIETREERRQFLLNQICFAAC 179 >gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces hygroscopicus ATCC 53653] gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces himastatinicus ATCC 53653] Length = 343 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +++Y A N W EV + D+A L+ E+ MI R + FFA+ Sbjct: 22 TLRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVADLAK---LSPGEQHMISRLVAFFATG 78 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMY 149 +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 79 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAASFAAV 138 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ +K R R L + F Sbjct: 139 ENIPSIREKAEFCFRWMDSVEKID-RLESKADRRRFLLNLICFAA 182 >gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] Length = 339 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 5/177 (2%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+ML L P++Y ++ Y +A N W E+ Q D+ SK ++ ER Sbjct: 5 PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + Sbjct: 63 LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E F + SI KA++ ++ ++ RR +L + C Sbjct: 123 DPEERVKAFAAVENIDSIKKKADFCFKWIDSIQDLKRIETRAERRQFLLNQICFAAC 179 >gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5] gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5] Length = 342 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L+ D+ L P++Y ++++ A N W EV + DLA L+ ER + Sbjct: 11 HMLLDPGMDL-TLRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLADLAK---LSPAERHL 66 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D Sbjct: 67 VSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPD 126 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E E F+ +PSI KA + ++ ++ + R L + F Sbjct: 127 EKERFAAFDAVENIPSIARKAEFCFRWIDSIFE-LRELRTRADRRAFLLNLICFAA 181 >gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] Length = 339 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+ Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVADLAK---LTPGEQHLIGRLVAFFATG 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 134 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + + ++ + R R L + F Sbjct: 135 ENIPSIREKAEFCFTWMDSVEKLD-RLETRADRRRFLLNLICFAA 178 >gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] Length = 330 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + D N++LPL Y WA + Y + NN+W+P E+PMQDD++ W + + L+D ER +I+ Sbjct: 6 TDNEHDPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQW-NGDALSDAERQLIEW 64 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 NLGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D Sbjct: 65 NLGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDY 124 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L+ MY VPSI K + + T+ + P F L + F Sbjct: 125 LYGMYDRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFY 173 >gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] Length = 336 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 6/164 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P+KY +E Y + N W EV DL SK +T+ E+ +I+R + FFA+ Sbjct: 14 TLRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSK--MTESEKHLIRRLVAFFATG 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +S+V NN+VL +Y+H+++PE R YL RQ +EEA+H + ++ + + E F Sbjct: 72 DSIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAV 131 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +PSI KA++ ++ +++ + + RR R L + F Sbjct: 132 ENIPSIKKKADFCYKWIDSINELTELNTIEDRR-RFLMNLICFA 174 >gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus utahensis DSM 12940] gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM 12940] Length = 330 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 76/167 (45%), Positives = 109/167 (65%), Gaps = 1/167 (0%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 A D N++LP+ Y WA E Y + NN+W+P E+PMQDD+A W + + LTD ER +++ NL Sbjct: 8 AEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQW-NGDELTDAERQLVEWNL 66 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 GFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG + L+ Sbjct: 67 GFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYLY 126 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 MY VPSI K + + T+++ P F +L + F Sbjct: 127 GMYDRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFY 173 >gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] Length = 325 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 19/175 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+ + +E+Y A + W +E+ + D W LT++E+ Sbjct: 3 EPLLIENKDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+++ +V N+V + PE R + Q E VH+ T+ ++ SL D Sbjct: 60 IKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E LF R + SI KA+WAL++ R + F Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN-------------NERSFAERLIAFA 161 >gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa] Length = 146 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 81/125 (64%), Positives = 100/125 (80%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+AL Sbjct: 19 AAPSTTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIAL 78 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 79 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 138 Query: 128 SHTFQ 132 +H +Q Sbjct: 139 THAYQ 143 >gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] Length = 388 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 19/181 (10%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + + + +L + + + PLKY WE Y A ++W EV + D+ WK+ L D Sbjct: 69 IEDEYEPILASTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LND 125 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + E R + Q+ E VH T+ +I Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLID 185 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D E LF + VP I KANWAL++ + R F Sbjct: 186 KYIKDGAEKKQLFEAIQTVPCIERKANWALKWF-------------DKSRPFAERLFAFA 232 Query: 194 C 194 C Sbjct: 233 C 233 >gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] Length = 324 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 19/177 (10%) Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L+ P++Y W Y A W EVP+ D+A W+ K L +DER Sbjct: 5 EPILSDNGSRKFSAFPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWREK--LNNDERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK LGFFA S+ +V N+ + PE RQ+ Q F E+VHS + +I +L Sbjct: 63 FIKHILGFFAGSDGIVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALIS 122 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 DE E LF+ +P++ KA WA ++ + R R + ++C Sbjct: 123 DEQERLDLFDAIETIPAVHNKAKWAQKWLK-----------PER--SFAERLVAWIC 166 >gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] Length = 258 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 10/144 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 + W EV + +D WK L +E+ + L FFA+S+ +V N+V + + P Sbjct: 1 SFWTTEEVDLGED---WKDWQKLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIP 57 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 E + + Q E +HS + +I + D E LFN + +P + KA+WAL++ + Sbjct: 58 EAKCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS 117 Query: 169 LSSPSFHYWNKRRRSRILTRSLRF 192 S + +R + + F Sbjct: 118 DES----TFAERLVAFAAVEGIFF 137 >gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 99B1] Length = 325 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 19/175 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+ + +E+Y A + W +E+ + D W LT++E+ Sbjct: 3 EPILIENEDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+++ +V N+V + PE R + Q E VH+ T+ ++ SL D Sbjct: 60 IKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E LF R + SI KA+WAL++ R + F Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN-------------NERSFAERLIAFA 161 >gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta [Kitasatospora setae KM-6054] Length = 339 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 7/182 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 D K+ML L P++Y +++Y A N W EV + D+A L++ Sbjct: 3 TEDRKKMLLDPGFELTLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVADLAK---LSEG 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 60 ERHMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 119 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D + F +PSI KA + +Y + +K R L + F Sbjct: 120 YLPDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAVDHID-SLRSKEDRRAFLLNLICFAA 178 Query: 195 RV 196 V Sbjct: 179 CV 180 >gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae] Length = 213 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 11/158 (6%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ WE Y + W E+ + D W+S LT E+ IK L FFA+S+ +V Sbjct: 1 QHADLWEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVL 57 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPS 154 N+ + PE R + Q E +HS T+ +I + E + N +P+ Sbjct: 58 ENLAGQFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPA 117 Query: 155 ITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + KA WA+Q+ Q +S + +R + + F Sbjct: 118 VAEKAKWAVQWMQRENS-----FTERLVAFAAVEGILF 150 >gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] Length = 342 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y ++++ A N W EV + DLA L+ E+ ++ R + FFA+ Sbjct: 21 TLRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLADLAK---LSPAEQHLVSRLVAFFATG 77 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMY 149 +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 78 DTIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKQRYEAFAAV 137 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA + ++ ++ RR+ L + F Sbjct: 138 ENIPSIARKAEFCFKWIDSIFELRELKTRADRRA-FLLNLICFAA 181 >gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2] Length = 387 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 19/175 (10%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ML + P+K+ W Y A ++W E+ D+ W NGL+D+E+ I Sbjct: 74 PMLLPTLSRFTVFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFI 130 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 K L FFA S+ +V NI + E R + QA E VH T+ +I Sbjct: 131 KYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSS 190 Query: 141 -DEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 ++ +LF + +P I KA WA+++ ++ R L F C Sbjct: 191 TEKNQLFEAIQTIPCIERKAKWAMKWF-------------DKKRPFAERLLAFAC 232 >gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1] gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1] Length = 328 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 17/176 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ ++ + P++ W Y +A +W EV + D+ W+ + L DER Sbjct: 7 EPLLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+++ LV N+ + + E + Q E VH+ + +I +L D Sbjct: 65 ISHVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKD 124 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LFN +P I KA WA ++T + R + F Sbjct: 125 VKEQDRLFNAVERMPCIAKKAEWAKRWTH------------DTNASFGERLVAFAA 168 >gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] Length = 336 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 6/174 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 R+L + QL PL+Y WA+ N W P E+P+ DD+ W+ LTDDER Sbjct: 10 DRLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERR 67 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 ++ LGFF ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L + Sbjct: 68 AVELLLGFFNPMESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPV 127 Query: 141 DEGELFNMYREVPSITAKANWALQYT-QTLSSPSFHYWNKRRRSRILTRSLRFL 193 D +F +R VP+I AK + + T Q L P R L + + Sbjct: 128 DRERVFAAHRNVPAIRAKEAFQQELTRQLLVRPD--VSTLEGRQAFLRNLIGYY 179 >gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] Length = 341 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 92/189 (48%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I +V+++++ + + +L +KY WA+ + N W P EV M D Sbjct: 4 RKKIYNPNSNESVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 63 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA Sbjct: 64 RDYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 121 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E++ M+R + +K ++ + Y Q ++P+ K + Sbjct: 122 LHSQSYAVMVESISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLATNPTERNIIKAMFAN 181 Query: 185 ILTRSLRFL 193 + + F Sbjct: 182 QILEGIYFY 190 >gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain [Streptomyces microflavus] Length = 321 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 8/180 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + + K +L+ ++ L P++Y +E+Y A N W EV + D+A L+ Sbjct: 3 DKNQKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVADLAK---LSPG 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 59 EQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118 Query: 138 LGLDEGELFNM---YREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D E +PSI KA + ++ ++ + R R L + F Sbjct: 119 YLPDPAERAAAFAAVENIPSIRDKAQFCFKWMDSVEKID-QLETRADRRRFLLNLICFAA 177 >gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] Length = 333 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 2/179 (1%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 VN DKR++N ++D+NQLLP +Y WAW+ +L A NHW P E+ M D+ + LT Sbjct: 2 PVNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDVYDYNH--TLT 59 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ I Sbjct: 60 TNERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCI 119 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 SLGL++ E++N YR VP I K + + + + + +K + + F Sbjct: 120 ESLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAA 178 >gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 341 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I +V+++R+ + + +L +KY WA+ + N W P EV M D Sbjct: 4 RKKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 63 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA Sbjct: 64 RDYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 121 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E+++M+R + AK ++ + Y Q ++P K + Sbjct: 122 LHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNPIERNIIKAMFAN 181 Query: 185 ILTRSLRFL 193 + + F Sbjct: 182 QILEGIYFY 190 >gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 340 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I +V+++R+ + + +L +KY WA+ + N W P EV M D Sbjct: 3 RKKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA Sbjct: 63 RDYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 120 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E+++M+R + AK ++ + Y Q ++P K + Sbjct: 121 LHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNPIERNIIKAMFAN 180 Query: 185 ILTRSLRFL 193 + + F Sbjct: 181 QILEGIYFY 189 >gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] Length = 350 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V ++ +L L P++Y ++++ A N W EV + DL L+ E Sbjct: 15 VGERHLLLDPGMDLTLRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLGDLAK---LSSAE 71 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 72 RHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTY 131 Query: 139 GLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +E E F + +PSI KA + ++ ++ + R L + F Sbjct: 132 VPEEKERFAAFAAVENIPSIARKAEFCFRWIDSIFE-LRELRTQADRRAFLLNLICFAA 189 >gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxidans DMS010] gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxydans DMS010] Length = 383 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 2/182 (1%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 K +N DDKR++N +D+NQL P KY WAW +L+A NHW P ++ M D+ ++ K Sbjct: 48 NNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDYRHK 107 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 LT +ER + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+ Sbjct: 108 --LTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTY 165 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 Q+ I ++GLD+ E++N YR VP I K A T+ ++ + Sbjct: 166 QHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSDIDLRDRDELENFVMSYAF 225 Query: 192 FL 193 F Sbjct: 226 FA 227 >gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] Length = 330 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 1/169 (0%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 +A D N++LP+ Y WA E Y + NN+W+P E+PMQDD++ W + + L+D ER +++ Sbjct: 6 TDAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQW-NGDALSDAERQLVEW 64 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG + Sbjct: 65 NLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDY 124 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++ MY +PSI K + + T+ ++ F + + F Sbjct: 125 MYGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFY 173 >gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 6/174 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 R+L + QL PL+Y WA+ N W P E+P+ DD+ W+ LTDDER Sbjct: 10 DRLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERR 67 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 ++ LGFF ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L + Sbjct: 68 AVELLLGFFNPMESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPV 127 Query: 141 DEGELFNMYREVPSITAKANWALQYT-QTLSSPSFHYWNKRRRSRILTRSLRFL 193 D +F +R+VP+I AK + + T Q L P R L + + Sbjct: 128 DRERVFAAHRDVPAIRAKEAFQQELTRQLLVRPD--VSTLEGRQAFLRNLIGYY 179 >gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] Length = 352 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 12 KPLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDVK 71 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL + N+ I +++ E L QAF+E+V Sbjct: 72 DY---PRLTAAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESV 127 Query: 127 HSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E+ ++ + A+ + Y + + + + Sbjct: 128 HSQSYSYMLDTICDPAKRNEILYQWKTDEPLLARNTFIGNLYNEFQERRDARTFLRVLMA 187 Query: 184 RILTRSLRFL 193 + + F Sbjct: 188 NFILEGVYFY 197 >gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 296 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W E+ + DL W + L+ +ER + L FFA+S+ +V N+ Sbjct: 1 MYKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + + E R + Q E +HS T+ +I + D E L + VP + KA+W Sbjct: 58 ATEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASW 117 Query: 162 ALQYTQT 168 ALQ+ Sbjct: 118 ALQWCDA 124 >gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] Length = 340 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 98/189 (51%), Gaps = 5/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I + + NV+D+++ + + +L +KY WA+ + NN W P EV M D+ Sbjct: 3 RKNIYNPDSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +K+ LT++E+ + L +SL NN++ + ++++PE L+RQ+FEEA Sbjct: 63 NDYKN---LTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEA 119 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E+++++R + K + + Y + ++P+ H + K + Sbjct: 120 LHSQSYAVMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELAANPTEHNFVKACFAN 179 Query: 185 ILTRSLRFL 193 + + F Sbjct: 180 QILEGIYFY 188 >gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor sp. SB155-2] gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor sp. SB155-2] Length = 341 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 5/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I E +V+++++ + + +L +KY WA+ + N W P EV M D Sbjct: 5 RKKIYNPESHESVNERKVFGGDPTGIFELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDA 64 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +K LTD E+L + L +SL NN++ + +++ PE L+RQAFEEA Sbjct: 65 RDYK---LLTDAEKLAYDKVLAQLIFMDSLQTNNLIDNVNPYITAPEINLILVRQAFEEA 121 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E++ ++RE + K ++ A Y + ++PS K + Sbjct: 122 LHSQSYAVMVDSISQNTDEIYELWREDLQLKQKNDYIAHVYEELAANPSDENIVKAMFAN 181 Query: 185 ILTRSLRFL 193 + + F Sbjct: 182 QILEGIYFY 190 >gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] Length = 310 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 19/167 (11%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 + L P++Y W+ Y + W E+ DLA LT+ E+ I+ L F Sbjct: 4 KNKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLADLAK---LTEGEKHFIRHVLAF 60 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---L 145 FA SE ++ N++ Y + E R +L QAF E +H+ T+ + + D E L Sbjct: 61 FAQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERL 120 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 FN VP++ KA W +++ + + R + F Sbjct: 121 FNAIENVPTVKRKAEWVMKWISS-------------DKTLAMRLIAF 154 >gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter mustelae 12198] gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter mustelae 12198] Length = 344 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 93/189 (49%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I E +V+D+++ + + L +KY WA++ + + N W P EV M +D Sbjct: 8 RKKIYNPESIESVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVSMNEDK 67 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + N LT E+L R L +SL NN++ + ++++PE L+RQA+EEA Sbjct: 68 RDYN--NLLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEA 125 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E+++M+R + +K ++ Y + +P+ K + Sbjct: 126 LHSQSYAVMVESISANTDEIYDMWRVDMQLKSKNDYIANVYMKLAQNPTERNIVKAMFAN 185 Query: 185 ILTRSLRFL 193 + + F Sbjct: 186 QILEGIYFY 194 >gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex echinatior] Length = 176 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++ + GL ++ N + +L + + P++Y W+ Y A + W EV Sbjct: 33 ISQDHGLKNGVQLKEDFNPKLEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVS 92 Query: 61 MQ-DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D W K L DE+ I L FFA+S+ +V N++ + + PE R + Sbjct: 93 LHKQDKKDWNEK--LNSDEKRFISHVLAFFAASDGIVNENLIEKFSQEVKIPEARCFYGF 150 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE 144 Q E +HS + +I + D E Sbjct: 151 QIAIENIHSEMYSLLIETYISDPKE 175 >gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1] gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1] Length = 337 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 2/180 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K V+DKR++N D+NQL P +Y WAWE +LSA NHW P E+ M DD+ + + L Sbjct: 5 KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ Sbjct: 63 SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 I SLGLD+ E++N YR VP I AK + + + P ++ L F Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAA 182 >gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] Length = 352 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 8/195 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 P+ ++V D+RM+ + ++N +KY W Y A NN W+P E+ + Sbjct: 7 QTLVKKPLFNPNGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINL 66 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + L++ ER + L F +SL + N+ I +++ E L QA Sbjct: 67 TQDVKDY---PRLSEAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQA 122 Query: 122 FEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWN 178 F+E+VHS ++ Y++ ++ E+ ++ + A+ + Y + + Sbjct: 123 FQESVHSQSYSYMLDTICDPAKRNEILYQWKTDKHLLARNTFIGDLYNEFQEHRDARTFL 182 Query: 179 KRRRSRILTRSLRFL 193 + + + + F Sbjct: 183 RVLMANYILEGVYFY 197 >gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi] gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi] Length = 288 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G R + + +L + + P+K+ W+ Y A + W EV + D Sbjct: 30 GTYETATTTVRYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDY 89 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W++ L D ER I R L FFA+S+ +V N+V + + PE R + Q E Sbjct: 90 RDWEN---LNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIEN 146 Query: 126 VHSHTFQYIITSLGLDEGE 144 +HS + +I + D+ + Sbjct: 147 IHSEMYSKMIDTYIRDQKQ 165 >gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter hepaticus ATCC 51449] gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC 51449] Length = 349 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 4/190 (2%) Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 I E +V D+++ + + L +KY WA+ + N W P EV M D Sbjct: 11 SRKQIYNPESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPD 70 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + GLT E+L R L +SL NN++ + ++++PE L+RQA+EE Sbjct: 71 KRDYN--GGLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEE 128 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRS 183 A+HS ++ ++ S+ + E++NM+R + +K + A Y + +P+ K + Sbjct: 129 ALHSQSYAVMVESISANTDEIYNMWRVDMQLRSKNDNIANVYIELAKNPNEQNLLKAMFA 188 Query: 184 RILTRSLRFL 193 + + F Sbjct: 189 NQILEGIYFY 198 >gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] Length = 344 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ KRM+N + ++N +KY W + Y A NN W+P E+ + DL Sbjct: 6 KPLFNEFGDTETSKKRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + N LT+DER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 66 DY---NKLTNDERTAYDKILSFLIFLDSIQTANL-SNINNYITASEVNLCLTIQAFQEAV 121 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E E+ +++ + + + + Y L +P+ K + Sbjct: 122 HSQSYSYMLDTICSPEKRNEILYQWKDDKILLERNKFIGELYNNFLEAPTQENLIKTIMA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGIYFY 191 >gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] Length = 340 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 5/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I + NV+D+++ + + +L +KY WA+ + NN W P EV M D+ Sbjct: 3 RKQIYNPDSTENVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +K LTD E+ + L +SL NN++ + +++ PE L+RQ+FEEA Sbjct: 63 NDYKQ---LTDAEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEEA 119 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E+++++R + K + A Y + +P+ + K + Sbjct: 120 LHSQSYAVMVDSISTNSEEIYDLWRRDMMLKHKNDTIAAVYQELAKNPTDSNFVKACFAN 179 Query: 185 ILTRSLRFL 193 + + F Sbjct: 180 QILEGIYFY 188 >gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] Length = 348 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 4/194 (2%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 N I E + +V D+++ + + L +KY WA+ + + N W P EV Sbjct: 6 PQNIERKKIYNPESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVN 65 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + GLT E+ R L +SL NN++ + ++++PE L+RQ Sbjct: 66 LNGDKRDYAD--GLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 123 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNK 179 AFEEA+HS ++ ++ S+ + E++ M+R + +K + A Y + P+ K Sbjct: 124 AFEEALHSQSYAVMVESISANTDEIYEMWRVDMQLRSKNDHIANVYIELGKQPTEQNLLK 183 Query: 180 RRRSRILTRSLRFL 193 + + + F Sbjct: 184 ALFANQILEGIYFY 197 >gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] Length = 343 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I + +V+++R+ + + +L +KY WA+ + N W P EV M D Sbjct: 6 RKKIYNPNSKESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 65 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA Sbjct: 66 RDYSD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 123 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-SPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E++ M+R + +K ++ + LS +P+ K + Sbjct: 124 LHSQSYAVMVESISANTDEIYEMWRTDIQLKSKNDYIANVYEELSVNPTESILLKAMFAN 183 Query: 185 ILTRSLRFL 193 + + F Sbjct: 184 QILEGIYFY 192 >gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] Length = 347 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ V +R++ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 67 DYRT---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E+ +++ P + ++ + Y + S + + + Sbjct: 123 HSQSYSYMLDTICEPQERNEVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAFVRTMIA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] Length = 387 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 19/179 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + ML + P+++ W Y A ++W E+ D+ W N L+D+E Sbjct: 70 EESEPMLLPTLSRFTVFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDW---NELSDNE 126 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA S+ +V NI + E R + Q+ E VH T+ +I Sbjct: 127 KHFIKYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKY 186 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + E LF + +P I KA WA+++ ++ R L F C Sbjct: 187 IKNSSEKKQLFEAIQTIPCIERKAKWAMKWF-------------DKKRPFAERLLAFAC 232 >gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool] Length = 392 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 19/182 (10%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ +L A +LP+++ WE Y + W E+ + D+ W+S L Sbjct: 68 KEKESEEPLLIANPRRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWES---LN 124 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I Sbjct: 125 SNEKHFIKYVLAFFAASDGIVLENLAEKFLSEIQIPEARAFYGFQIAMENIHSETYSLLI 184 Query: 136 TSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 DE ELF+ V ++ KA WA + R+ R + F Sbjct: 185 DQYIRDEKEKMELFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVGF 231 Query: 193 LC 194 C Sbjct: 232 AC 233 >gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas denitrificans DSM 1251] gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans DSM 1251] Length = 340 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 5/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I E NV+D+R+ + + +L +KY WA+ + NN W P EV M D+ Sbjct: 3 RKKIYNPESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + +K +TD E+ + L +SL NNI+ I ++++PE L+RQA+EEA Sbjct: 63 SDYKQ---ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEEA 119 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-SPSFHYWNKRRRSR 184 +HS ++ ++ ++ + E++ ++R + K + + + LS +P+ H + K + Sbjct: 120 LHSQSYAVMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELSKNPTEHNFVKACFAN 179 Query: 185 ILTRSLRFL 193 + + F Sbjct: 180 QILEGIYFY 188 >gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] Length = 340 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 6/165 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y ++ + N W EV Q DL K + L+ E +I+R + FFA+ Sbjct: 18 TLRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATG 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM---Y 149 +S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH + ++ + D Sbjct: 76 DSIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAV 135 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI+ KA++ +++ ++ + R + L + F Sbjct: 136 ENIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAA 179 >gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum] gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] Length = 352 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 12/193 (6%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + + + K V++ + +R + N+L L W Y A + W+ E+ + Sbjct: 16 DEENIEKLVNEVKINQVNEPMLKYSRENRNELKELI-KDIWSMYKKAEASFWVTEEIDLS 74 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D W+S L D ER IK L FFA+S+ +V N+ + R + PE R Y Q Sbjct: 75 QDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQMS 131 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS T+ +I + E LF + ++ KA WA ++ + + + Sbjct: 132 IEQIHSETYSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWMNS-----ERSFAE 186 Query: 180 RRRSRILTRSLRF 192 R + F Sbjct: 187 RIIGFCAVEGILF 199 >gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum ATCC 824] gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum ATCC 824] gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum EA 2018] Length = 344 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 8/189 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ K+++N + ++N +KY W + Y NN W+P E+ + DL Sbjct: 7 PLFNENGDTETSKKKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDLKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + LTD+ER + L F +S+ N+ I +++ E L QAF+EAVH Sbjct: 67 Y---GKLTDNERTAYDKILSFLIFLDSVQTANLG-NINDYITASEVNLCLTIQAFQEAVH 122 Query: 128 SHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y++ ++ E E+ +++ + ++ + Y + PS + K Sbjct: 123 SQSYSYMLDTICSPEKRNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPSDENFLKAIMGN 182 Query: 185 ILTRSLRFL 193 + + F Sbjct: 183 YVLEGIYFY 191 >gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] Length = 353 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 88/196 (44%), Gaps = 8/196 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A N P+ ++V ++M+N + ++N +KY WA + Y A NN W+P E+ Sbjct: 7 AMNLQRKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEIN 66 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ ++ L+ E+ + L F +S+ N+ I +++ E L Q Sbjct: 67 LNQDVKDYRK---LSKAEKDAYDKTLSFLIFLDSIQTANLP-NIGEYITANEVNLCLTIQ 122 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYW 177 AF+EAVHS ++ Y++ S+ + + +++ P + A+ + Y + + Sbjct: 123 AFQEAVHSQSYSYMLDSICSPQERNAILYQWKDDPHLLARNKFIGDLYNDFMEHRDGEHL 182 Query: 178 NKRRRSRILTRSLRFL 193 K + + + F Sbjct: 183 IKTLIANYILEGIYFY 198 >gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum B str. Eklund 17B] gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B str. Eklund 17B] Length = 344 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + KR++N + ++N +KY WA + Y NN W+P E+ + DL Sbjct: 6 KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L DER + L F +S+ N+ I +++ E L Q+F+EAV Sbjct: 66 DYKK---LLPDERTAYDKILSFLIFLDSIQTANL-SNINSYITASEINLCLTIQSFQEAV 121 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E E+ +++ + + + Y + +++P+ + K + Sbjct: 122 HSQSYSYMLDSICSPEERNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNLIKTLMA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGIYFY 191 >gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] Length = 350 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P+ KRM+N + ++N +KY W + Y A NN W+P E+ + DL Sbjct: 9 RKPLFNEHGDTETAKKRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDL 68 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + L ER + L F +S+ N+ + +++ E L Q F+EA Sbjct: 69 KDY---SKLLPAERTAYDKILSFLIFLDSIQTANLP-NVSEYITASEVNLCLNIQTFQEA 124 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 VHS ++ Y++ ++ E + ++ P + + + Y ++ S + K Sbjct: 125 VHSQSYSYMLDTICSPEERDAILFQWKNDPILLNRNKFIGDLYNAFMNDRSTFQFMKVLV 184 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 185 ANYILEGIYFY 195 >gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] Length = 347 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ V +R++ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 67 DYRT---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ +++ P + ++ + Y + S + + + Sbjct: 123 HSQSYSYMLDTICEPQERNKVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAFVRTMIA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168] Length = 346 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 8/189 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + +V + M+ + ++N +KY W + Y A NN W+P E+ + D Sbjct: 7 PLFNPDGDADVRLRSMVGGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDTKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L + ER + L F +S+ N+ + +++ E L Q F+E VH Sbjct: 67 Y---PHLDEAERTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLSIQTFQECVH 122 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSR 184 S ++ Y++ ++ E E+ ++ + + + Y F + K + Sbjct: 123 SQSYSYMLDTICSPEQRNEILYQWKTDERLLKRNTFIGGCYNDFQEHKDFFRFMKVLIAN 182 Query: 185 ILTRSLRFL 193 + + F Sbjct: 183 YILEGIYFY 191 >gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 348 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Y + S Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDEN 176 Query: 177 WNKRRRSRILTRSLRFLC 194 + K + L SL F Sbjct: 177 FAKVIIANYLLESLYFYN 194 >gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium sp. NRC-1] gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium salinarum R1] gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1] gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium salinarum R1] Length = 331 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 1/168 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +A D N++LP+ Y WA E Y N+W P EV MQ D++ W N LTD ER +++ N Sbjct: 7 DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQW-QGNELTDAERQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + MY +PSI K + + T+ + +F L + F Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFY 173 >gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] Length = 310 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 19/167 (11%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 + L P++Y W+ Y + W E+ DL LT+ E+ I+ L F Sbjct: 4 KNKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLPD---LVKLTEGEKHFIRHVLAF 60 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---L 145 FA SE ++ N++ Y + E R +L QAF E +H+ T+ + + D E L Sbjct: 61 FAQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERL 120 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 FN VP++ KA W +++ + + R + F Sbjct: 121 FNAIENVPTVQRKAQWVMKWISS-------------DKPLAMRLIAF 154 >gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D11] Length = 348 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 7 RKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 66 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 67 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEA 122 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 123 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 182 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 183 ANYLLESLYFYN 194 >gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum E3 str. Alaska E43] gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 344 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + KR++N + ++N +KY WA + Y NN W+P E+ + DL Sbjct: 6 KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L +ER + L F +S+ N+ I +++ E L Q+F+EAV Sbjct: 66 DYKK---LLPEERTAYDKILSFLIFLDSIQTANL-SNINSYITASEINLCLTIQSFQEAV 121 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E E+ +++ + + + Y + +++P+ + K + Sbjct: 122 HSQSYSYMLDSICSPEERNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNLIKTLMA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGIYFY 191 >gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 348 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKAVVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Y + S Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDEN 176 Query: 177 WNKRRRSRILTRSLRFLC 194 + K + L SL F Sbjct: 177 FAKVIIANYLLESLYFYN 194 >gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] Length = 347 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 87/191 (45%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P+ E ++V ++RM+N + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 6 RKPLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDK 65 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + L++ ER + L F +SL + N+ I ++++ E L Q F+E Sbjct: 66 SDY---PKLSEAERRAYDKILSFLVYLDSLQSANLP-NISQYVTANEVNLCLSIQTFQEC 121 Query: 126 VHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++ Y++ ++ + ++ ++ + + + Y + + S + + Sbjct: 122 IHSQSYSYMLDTICNPTERNDILYQWKTDEHLLRRNEFIGNLYNEFVEKQSKDSFLRVCI 181 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 182 ANFILEGIYFY 192 >gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 348 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Y + S Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDEN 176 Query: 177 WNKRRRSRILTRSLRFLC 194 + K + L SL F Sbjct: 177 FAKIIIANYLLESLYFYN 194 >gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] Length = 344 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ +R++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 400 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 84/188 (44%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + +D K+M+ +++N +KY W + Y NN W+P E+ M D+ + Sbjct: 62 LFNEKGDIGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQY 121 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L ER + L F +SL NN+ I ++++ E L QAF+EAVHS Sbjct: 122 RT---LPVAERRAYDKILSFLVFLDSLQTNNVPF-IAQYITANEAVLCLTIQAFQEAVHS 177 Query: 129 HTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++ Y++ ++ E+ +R+ + A+ + + + S + + Sbjct: 178 QSYSYMLDTICSPDERTEILYQWRDDEHLLARNKFIGDLFMAFQNDQSERNLMRVLVANY 237 Query: 186 LTRSLRFL 193 + + F Sbjct: 238 ILEGIYFY 245 >gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 344 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ +R++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens str. 13] gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens ATCC 13124] gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium perfringens str. 13] gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens ATCC 13124] gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] Length = 344 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL Sbjct: 7 PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LT +E+ + L F +S+ N+ I +++ E L QAF+EAVH Sbjct: 67 YKK---LTKEEKTAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVH 122 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y++ S+ E E+ +++ + + + Y L S + K + Sbjct: 123 SQSYSYMLDSICSPEERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFIKSVMAN 182 Query: 185 ILTRSLRFL 193 + + F Sbjct: 183 YILEGVYFY 191 >gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 344 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] Length = 344 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit [Cryptosporidium muris RN66] gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative [Cryptosporidium muris RN66] Length = 346 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L++ + ++Q++ + W Y + W E+ + D+ W+S L + E+ Sbjct: 26 HEEPVLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWES---LKEPEK 82 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 IK L FFA+S+ +V N+ + + + E R Y Q E +HS T+ +I Sbjct: 83 HFIKYVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSETYSLLIDQYI 142 Query: 140 ---LDEGELFNMYREVPSITAKANWALQYTQT 168 D LF +P++ KA WA ++ Sbjct: 143 SDVKDRQMLFEAISHLPAVKTKAKWATKWMNN 174 >gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] Length = 344 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] Length = 344 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISEHVTAPEVNLLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] Length = 347 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + + + +RM+ + ++N +KY WA Y A NN W+P E+ + DL Sbjct: 7 KPLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K+ LT ER + L F +S+ N+ I ++++ E L Q F+EAV Sbjct: 67 DYKN---LTAAERTAYDKILSFLVFLDSIQTANLPC-IAQYITANEVNLCLTIQGFQEAV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ + ++E + + + Y + + + Sbjct: 123 HSQSYSYMLDSICSPVERDRILYQWKEDEHLLRRNTFIGNLYNEFQEKKDDVTLLRVIMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii VEG] Length = 391 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 19/175 (10%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L A +LP+++ WE Y + W E+ + D+ W++ L ++E+ I Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 K L FFA+S+ +V N+ + PE R + Q E +HS T+ +I DE Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190 Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LF+ V ++ KA WA + R+ R + F C Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVGFAC 232 >gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402] Length = 351 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ Sbjct: 11 KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAV Sbjct: 71 DYRK---LSGPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAV 126 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E E+ +++ + + + Y + S S + K + Sbjct: 127 HSQSYSYMLDTICSPEERTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAFLKVCVA 186 Query: 184 RILTRSLRFL 193 + + F Sbjct: 187 NYILEGIYFY 196 >gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii GT1] Length = 391 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 19/175 (10%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L A +LP+++ WE Y + W E+ + D+ W++ L ++E+ I Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 K L FFA+S+ +V N+ + PE R + Q E +HS T+ +I DE Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190 Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 E LF+ V ++ KA WA + R+ R + F C Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVGFAC 232 >gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 245 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Y + S Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDEN 176 Query: 177 WNKRRRSRILTRSLRFLC 194 + K + L SL F Sbjct: 177 FAKVIIANYLLESLYFYN 194 >gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] Length = 347 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ V+ +RM+ + ++N +KY W + Y A NN W+P E+ M D+ Sbjct: 7 KPLFNPSGDTQVNKRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L ER + L F +S+ N+ I +++ E L Q F+EAV Sbjct: 67 DYRK---LPQAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++E + + + Y + K + Sbjct: 123 HSQSYSYMLDTICEPQERNDVLYQWKEDQHLLKRNEFIGNLYNEFQKKKDAGVLVKTLVA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] Length = 344 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] Length = 344 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] Length = 348 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + ++ +R++ +++ L +KY WA + Y + N W+P ++ Sbjct: 1 MKAAVDRKKLFNPLGDDSLSKRRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K+ LTD E+ L F +S+ NNI + +++ PE L Sbjct: 61 DLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+EA+HS ++QYII S+ E +++ +RE + + + + Y + L +P+ Sbjct: 117 QTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQRFLENPNDEN 176 Query: 177 WNKRRRSRILTRSLRFLC 194 ++K + L ++ F Sbjct: 177 FSKVIVADYLLEAIYFYN 194 >gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] Length = 352 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 8/190 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 PI E + + +L + ++ L +KY WA + Y N W+P V + D+ Sbjct: 13 PIFNPEGNDDPAKRGILKGNTTNIFNLNVIKYPWATKLYRVMMANFWIPETVDLTQDVQD 72 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LTDDER L F +S+ NI I ++ PE L A++EA+H Sbjct: 73 YKE---LTDDERQAYDEILSFLVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIH 128 Query: 128 SHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y I S+ E++ +++ P + + + Y + L P+ + + Sbjct: 129 SQSYGYTIESVVPAEKREEVYYWWKKDPILFERNKYIADIYQKFLEEPTLENYGEVLIGN 188 Query: 185 ILTRSLRFLC 194 L L F Sbjct: 189 YLLEGLYFYN 198 >gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] Length = 310 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 11/168 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 + L P++Y W+ Y + W E+ DLA LT+ E+ I+ L F Sbjct: 4 KNKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLADLAK---LTEGEKHFIRHVLAF 60 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL---DEGEL 145 FA SE ++ N++ Y + E R +L QAF E +H+ T+ + + + L Sbjct: 61 FAQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERL 120 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 FN VP++ KA W +++ + R + L L F Sbjct: 121 FNAIENVPTVKRKAEWVMKWISSD-----KPLTMRLIAFGLVEGLFFA 163 >gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing bacterium SS3/4] Length = 346 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E ++V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 6 KPLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 66 DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 121 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++ + + + Y + + + Sbjct: 122 HSQSYSYMLDTICSPVERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTLLRVMMA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGIYFY 191 >gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] Length = 346 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 8/195 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 P+ + +V ++RM+ + ++N +KY W + Y A NN W+P E+ + Sbjct: 2 EQLIRKPLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINL 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + L ER + L F +S+ N+ AI +++ E L Q Sbjct: 62 GPDVKDY---PMLDAGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQT 117 Query: 122 FEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWN 178 F+EAVHS ++ Y++ ++ E+ ++ + A+ + Y + S + Sbjct: 118 FQEAVHSQSYSYMLDTICEPQTRNEVLYQWKNDEHLLARNTFIGNLYNEFQKDKSPFTFM 177 Query: 179 KRRRSRILTRSLRFL 193 K + + + F Sbjct: 178 KTVVANFILEGVYFY 192 >gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens SM101] gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens SM101] Length = 344 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL Sbjct: 7 PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LT +E+ + L F +S+ N+ I +++ E L QAF+EAVH Sbjct: 67 YKK---LTKEEKAAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVH 122 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y++ S+ E E+ +++ + + + Y L S + K + Sbjct: 123 SQSYSYMLDSICSPEERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSIENFIKSVMAN 182 Query: 185 ILTRSLRFL 193 + + F Sbjct: 183 YILEGVYFY 191 >gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos taurus] gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] Length = 341 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 11/150 (7%) Query: 47 LSACNNHWMPTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 +A P+E V + D+ W+ L +ER I L FFA+S+ +V N+V Sbjct: 46 KTARRIFQEPSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFS 102 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + +I + D E LFN +P + KA+WA Sbjct: 103 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWA 162 Query: 163 LQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 L++ ++ + +R + + F Sbjct: 163 LRWIGDKAA----TYGERVVAFAAVEGIFF 188 >gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus] Length = 338 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 11/150 (7%) Query: 47 LSACNNHWMPTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 +A P+E V + D+ W+ L +ER I L FFA+S+ +V N+V Sbjct: 43 KTARRIFQEPSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFS 99 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + +I + D E LFN +P + KA+WA Sbjct: 100 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWA 159 Query: 163 LQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 L++ ++ + +R + + F Sbjct: 160 LRWIGDKAA----TYGERVVAFAAVEGIFF 185 >gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis] Length = 407 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 10/137 (7%) Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 V + DL W+S L DDER I L FFA+S+ +V N+V + + E R + Sbjct: 138 VDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYG 194 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFH 175 Q E +HS + +I + + E LFN +P + KA+WAL + + Sbjct: 195 FQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNWIGNQKA---- 250 Query: 176 YWNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 251 SYGERVVAFAAVEGIFF 267 >gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp. NBC37-1] gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] Length = 339 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 5/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I E D+++ + + +L +KY WA+ + NN W P EV M D+ Sbjct: 3 RKKIYNPESEERTSDRKIFGGDPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +K LTD E+ + L +SL NNI+ + ++ PE L+RQAFEEA Sbjct: 63 NDYK---RLTDAEKQAYDKVLAQLIFMDSLQTNNIIDNLNPFITAPEVNLILVRQAFEEA 119 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E++ ++R + +K + + Y + +P+ K + Sbjct: 120 LHSQSYAVMVDSISTNSEEIYELWRRDMKLKSKNDAIAKVYEELSENPTDENIVKAMFAN 179 Query: 185 ILTRSLRFL 193 + + F Sbjct: 180 QILEGIYFY 188 >gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPAG1] gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori HPAG1] Length = 341 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I + +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKVLF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] Length = 349 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 88/196 (44%), Gaps = 8/196 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P+ E ++V ++R++N + ++N +KY W + Y A NN W+P E+ Sbjct: 3 TDQINRKPLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEIN 62 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + + L+ E+ + L F +SL + N+ I ++++ E L Q Sbjct: 63 LNQDKSDY---PRLSLAEKTAYDKILSFLVYLDSLQSANLP-NISQYITANEVNLCLSIQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYW 177 F+E +HS ++ Y++ S+ E ++ ++ + + + + Y + ++ + Sbjct: 119 TFQECIHSQSYSYMLDSICSPEQRNDILYQWKTDEHLLKRNEFIGELYNEFVAKQDKQSF 178 Query: 178 NKRRRSRILTRSLRFL 193 + + + + F Sbjct: 179 LRVCIANFILEGVYFY 194 >gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] Length = 341 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I + +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema denticola ATCC 35405] gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema denticola ATCC 35405] Length = 351 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ Sbjct: 11 KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAV Sbjct: 71 DYRK---LSIPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAV 126 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E E+ +++ + + + Y + S S + K + Sbjct: 127 HSQSYSYMLDTICSPEERTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAFLKVCVA 186 Query: 184 RILTRSLRFL 193 + + F Sbjct: 187 NYILEGIYFY 196 >gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 347 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 67 DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++ + + + Y + + + Sbjct: 123 HSQSYSYMLDTICSPVERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTLLRVMMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] Length = 368 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 83/189 (43%), Gaps = 8/189 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + V +RM+N + ++N +KY W + Y A NN W+P E+ + D Sbjct: 29 PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDRKD 88 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L+ ER + L F +S+ N+ A+ +++ E L Q F+EAVH Sbjct: 89 Y---PLLSPQERRAYDKILSFLVFLDSIQTANLP-ALGEYVTANEINLCLSIQTFQEAVH 144 Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y++ ++ ++ ++ P + A+ + Y + S + + K + Sbjct: 145 SQSYSYMLDTICEPQTRNDVLYQWKSDPRLLARNTFIGDLYNEFQKDKSPYAFMKTVVAN 204 Query: 185 ILTRSLRFL 193 + + F Sbjct: 205 FILEGVYFY 213 >gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] Length = 353 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + ++ +R++ +++ L +KY WA + Y + N W+P ++ + D Sbjct: 12 RKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDK 71 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +K+ LTD E+ L F +S+ NNI + +++ PE L Q F+EA Sbjct: 72 NDYKN---LTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEA 127 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ E +++ +RE + + + + Y + L P+ ++K Sbjct: 128 IHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQKFLEEPNDKNFSKVII 187 Query: 183 SRILTRSLRFLC 194 + L ++ F Sbjct: 188 ADYLLEAIYFYN 199 >gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] Length = 339 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 92/189 (48%), Gaps = 5/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I +V+D+++ + + +L +KY WA+ + NN W P EV M D Sbjct: 3 RKQIYNPTSTEHVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDA 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +K LT+ E+ + L +SL NN++ + +++ PE L+RQ+FEEA Sbjct: 63 VDYK---YLTEMEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEA 119 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E+++++R+ + K + A +Y + + PS + K + Sbjct: 120 LHSQSYAVMVDSISQNSEEIYDLWRKDMMLKTKNDSIAARYDELANDPSESAFVKACFAN 179 Query: 185 ILTRSLRFL 193 + + F Sbjct: 180 QILEGIYFY 188 >gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] Length = 351 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 5/193 (2%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N I +V+++R+ + + +L +KY WA+ + N W P EV M Sbjct: 10 NRVSRKKIYNPHSTESVNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVNM 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + LT E+ R L +SL NN+ I +++ PE L+RQA Sbjct: 70 NQDKRDY---MELTLQEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQA 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKR 180 FEE++H+ ++ ++ S+ + E++ M+R+ + +K ++ YT +P+ K Sbjct: 127 FEESLHAQSYAVMVDSISANTDEIYQMWRKDDKLRSKNDYIADVYTDLAKNPTETNLIKA 186 Query: 181 RRSRILTRSLRFL 193 + + + F Sbjct: 187 MFANQILEGIYFY 199 >gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] Length = 347 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 76/190 (40%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E +V +RM + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 67 DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++ + + + Y + + + Sbjct: 123 HSQSYSYMLDTICSPVERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTLLRVMMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 196 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 N + P+ AG + + N +++ + L P++Y W KY + Sbjct: 39 TENLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 99 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 R + Q E +HS T+ ++ + D E Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEE 187 >gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Lithuania75] Length = 341 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I + +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] Length = 353 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 81/196 (41%), Gaps = 8/196 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + P+ + +V +RM+ + ++N LKY WA E Y A NN W+P E+ Sbjct: 6 IKKPLPHKPLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEI 65 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ + L+ ER + L F +S+ N+ + +++ E L Sbjct: 66 NLSQDIKDY---PNLSPAERKAYDKILSFLVFLDSIQTANLPC-VGEYITANEVNLCLNI 121 Query: 120 QAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+E VHS ++ Y++ ++ + ++ ++ + + + + Y + Sbjct: 122 QTFQECVHSQSYSYMLDTICSPDERMDILYQWKTDEHLLKRNTFIGECYNEFQVKKDART 181 Query: 177 WNKRRRSRILTRSLRF 192 K + + + F Sbjct: 182 LVKVMMANFVLEGIYF 197 >gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter pylori B8] gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter pylori B8] Length = 341 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I + +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium ulcerans ATCC 49185] Length = 348 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + ++ +R++ +++ L +KY WA + Y + N W+P ++ Sbjct: 1 MKAVVDRKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K+ LTD E+ L F +S+ NNI + +++ PE L Sbjct: 61 DLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+EA+HS ++QYII S+ E +++ +RE + + + + Y + L P+ Sbjct: 117 QTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQKFLEEPNDKN 176 Query: 177 WNKRRRSRILTRSLRFLC 194 ++K + L ++ F Sbjct: 177 FSKVIIADYLLEAIYFYN 194 >gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] Length = 341 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I + +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori 51] Length = 341 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKVLF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori P12] gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori P12] Length = 341 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL ANN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes bacterium D7] gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. D7] Length = 346 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 6 KALFNAKGDIDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L++ ER + L F +SL N+ I +++ E L QAF+EAV Sbjct: 66 DYR---LLSEAERTAYDKILSFLVFLDSLQTANLP-NIGEYITANEINLCLTIQAFQEAV 121 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E+ ++ + + + QY L + K + Sbjct: 122 HSQSYSYMLDSICSPTKRDEILYQWKFDEHLLKRNEFIGEQYNAFLEHKDSFHLMKTIMA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGIYFY 191 >gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 52] Length = 341 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKVLF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPKX_438_AG0C1] Length = 341 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F16] Length = 341 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 26695] gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB) [Helicobacter pylori 26695] Length = 341 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL ANN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori v225d] gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Cuz20] gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F32] Length = 341 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. D4] gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides dorei 5_1_36/D4] gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] Length = 349 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDQAERTAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E E+ ++ + + + Y + S K + Sbjct: 125 HSQSYSYMLDSICSPEKRNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184 Query: 184 RILTRSLRFL 193 + + F Sbjct: 185 NYILEGIYFY 194 >gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter acinonychis str. Sheeba] gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter acinonychis str. Sheeba] Length = 341 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 5/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 5 RKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDK 64 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA Sbjct: 65 RDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEA 121 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 +HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K + Sbjct: 122 LHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALFAN 181 Query: 185 ILTRSLRFL 193 + + F Sbjct: 182 QILEGIYFY 190 >gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] Length = 346 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 5 RKALFNASGDIDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDI 64 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ++ L + E+ + L F +SL N+ + +++ E L QAF+EA Sbjct: 65 KDYR---LLNEHEKTAYDKILSFLVFLDSLQTANLP-NVGEYITANEINLCLTIQAFQEA 120 Query: 126 VHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRR 182 VHS ++ Y++ S+ ++ E+ ++ + + + QY L ++ K Sbjct: 121 VHSQSYSYMLDSICSPIERDEILYQWKYDEHLLKRNEFIGEQYNAFLEHKDSFHFMKTVI 180 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 181 ANYILEGIYFY 191 >gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SouthAfrica7] Length = 341 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I + +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEKNILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F57] Length = 341 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKNKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] Length = 355 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + P+ + V ++M+ + ++N +KY W Y A NN W+P E+ Sbjct: 8 IMEQLKKRPLFNPNGDIQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEI 67 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ +++ L E+ + L F +S+ N+ I +++ E L Sbjct: 68 NLGVDIKDYRN---LPKAEKRAYDKILSFLIFLDSIQTANLP-GISEYITANEVNLCLSI 123 Query: 120 QAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+EAVHS ++ Y++ ++ E+ ++E + A+ + Y + S Sbjct: 124 QAFQEAVHSQSYSYMLDTICEPQERNEVLYQWKEDEHLLARNEFIGNLYNAFQTEKSMEM 183 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 184 LVKTIVANYILEGIYFY 200 >gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium prausnitzii SL3/3] Length = 347 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 67 DY---PRLLSTERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++ + + + Y + + + Sbjct: 123 HSQSYSYMLDTICSPVERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTLLRVMMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori B38] gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Helicobacter pylori B38] Length = 341 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I + +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F30] Length = 341 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] Length = 352 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 85/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS Sbjct: 74 RN---LSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHS 129 Query: 129 HTFQYIITSLGLD--EGELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ + +++E + + + QY + + S + + Sbjct: 130 QSYSYILDTICSPDERTRILYLWKEDDHLLKRNKFIGDQYNEFIKDDSEFNLMRVLIANY 189 Query: 186 LTRSLRFL 193 + + F Sbjct: 190 ILEGIYFY 197 >gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella succinogenes DSM 1740] Length = 341 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 4/190 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I + V+++++ + + +L +KY WA+ + N W P EV M D Sbjct: 4 RKKIYNPQSTETVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDK 63 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + GLT E+L R L +SL NN++ + ++++PE L+RQAFEEA Sbjct: 64 RDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 121 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRSR 184 +HS ++ ++ S+ + E++ M+R + +K + A Y + +P+ K + Sbjct: 122 LHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELAKNPTDSAMLKAMFAN 181 Query: 185 ILTRSLRFLC 194 + + F Sbjct: 182 QILEGIYFYA 191 >gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Sat464] Length = 341 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEESILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] Length = 363 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 85/189 (44%), Gaps = 8/189 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + V + +RM+ + ++N LKY W E Y A NN W+P E+ M D+ Sbjct: 24 ALFNEHGDVELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTDVQD 83 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAVH Sbjct: 84 YRK---LSKAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQEAVH 139 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y++ ++ E ++ +++ + A+ + Y + ++ S K + Sbjct: 140 SQSYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFVNDKSALALVKVAVAN 199 Query: 185 ILTRSLRFL 193 + + F Sbjct: 200 YILEGVYFY 208 >gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] Length = 349 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDQAERTAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E E+ ++ + + + Y + S K + Sbjct: 125 HSQSYSYMLDSICSPEKRNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184 Query: 184 RILTRSLRFL 193 + + F Sbjct: 185 NYILEGIYFY 194 >gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori J99] gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter pylori J99] gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter pylori 908] gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter pylori 2018] gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter pylori 2017] Length = 341 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL ANN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter pylori 35A] Length = 341 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKVLF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] Length = 341 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL ANN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] Length = 360 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 83/191 (43%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 PI +D +RM+ + ++N LKYGW + Y A NN W+P E+ M D+ Sbjct: 19 RKPIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDV 78 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ++ L+ E+ + L F +S+ N+ + + ++ E L QAF+EA Sbjct: 79 QDYR---RLSPAEKTAYDKILSFLIFLDSVQTANLP-NLAQFITANEVNLCLTIQAFQEA 134 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++ Y++ ++ + + +R+ + A+ + Y + + K Sbjct: 135 IHSQSYSYMLDTICSPDERTGILYQWRDDAHLLARNKFIGDLYQNFMVNQDVCQIVKTMV 194 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 195 ANYILEGIYFY 205 >gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] Length = 351 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 82/192 (42%), Gaps = 8/192 (4%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 + + V ++M+ + ++N +KY WA E Y A NN W+P E+ M D Sbjct: 9 ARKKLFNETGDIEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEINMNAD 68 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+E Sbjct: 69 VQDYRK---LSPAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQE 124 Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRR 181 AVHS ++ Y++ ++ + + +++ + + + Y + S K Sbjct: 125 AVHSQSYSYMLDTICSPDERTAILYQWKDDEHLLKRNKFIGDLYNEFQDDKSALALLKVA 184 Query: 182 RSRILTRSLRFL 193 + + + F Sbjct: 185 VANYILEGVYFY 196 >gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Gambia94/24] Length = 341 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL ANN++ I +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum str. Nichols] gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum SS14] gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema pallidum subsp. pallidum SS14] gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 351 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 84/192 (43%), Gaps = 8/192 (4%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 + + + +RM+ + ++N +KY W + Y A NN W+P E+ M D Sbjct: 9 QRRALFNEAGDIELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSD 68 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + +++ L+ E+ + L F +S+ N+ I ++++ E L QAF+E Sbjct: 69 VQDYRN---LSAIEKTAYDKILSFLIFLDSIQTANLP-NIGQYITANEINLCLTIQAFQE 124 Query: 125 AVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRR 181 AVHS ++ Y++ ++ E ++ +++ + A+ + Y + S K Sbjct: 125 AVHSQSYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVA 184 Query: 182 RSRILTRSLRFL 193 + + + F Sbjct: 185 IANYVLEGIYFY 196 >gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides vulgatus ATCC 8482] gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides vulgatus ATCC 8482] gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] Length = 349 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDQAERTAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E E+ ++ + + + Y + S K + Sbjct: 125 HSQSYSYMLDSICSPEKRNEILYQWKTDGHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184 Query: 184 RILTRSLRFL 193 + + F Sbjct: 185 NYILEGIYFY 194 >gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 352 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 85/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS Sbjct: 74 RN---LSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHS 129 Query: 129 HTFQYIITSLGLD--EGELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ + +++E + + + QY + + S + + Sbjct: 130 QSYSYILDTICSPDERTRILYLWKEDEHLLKRNKFIGDQYNEFIKDDSEFNLMRVLIANY 189 Query: 186 LTRSLRFL 193 + + F Sbjct: 190 ILEGIYFY 197 >gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 344 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + KR++N + ++N +KY W + Y NN W+P EV + DL Sbjct: 6 KPLFNEFGDREITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L D+ER+ + L F +S+ N+ I +++ E L Q+F+EAV Sbjct: 66 DYQN---LLDEERIAYDKILSFLIFLDSIQTANL-SNINNYITASEVNLCLTIQSFQEAV 121 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E E+ +++ + + + Y + + +P+ K + Sbjct: 122 HSQSYSYMLDSICSPEKRNEILYQWKDDEILLNRNKFIGDLYNEFIDNPTEETLLKTLMA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGIYFY 191 >gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502] gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis] Length = 296 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 11/151 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W+ E+ + D W+S L D ER IK L FFA+S+ +V N+ + Sbjct: 1 MYKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 R + PE R Y Q E +HS T+ +I D E LF + ++ KA W Sbjct: 58 LREIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEW 117 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 A ++ + + +R + F Sbjct: 118 ATKWMNS-----ERSFAERIIGFCAVEGILF 143 >gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] Length = 346 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 80/190 (42%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + +R++N + ++N +KY W Y +A NN W+P E+ + D+ Sbjct: 6 KALFNEHGDIELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDVK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + +++ E L QAF+EAV Sbjct: 66 DYR---ILSKAEKTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E + +R+ + + + Y + + + Sbjct: 122 HSQSYSYMLDTICSPEERTSILYQWRDDEHLLRRNKFIGDIYNDFQLHKTPDQLARTMVA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGVYFY 191 >gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 362 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 2/172 (1%) Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N R + LLPLKY WA++ Y + NHW P ++PM D+ W+ +TD ER Sbjct: 26 KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I+ +G+F+++E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG+ Sbjct: 86 IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E M+ ++P+I K + ++ ++ L + + F Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRR-DLDLTQPENKQLLARNMFLF 196 >gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] Length = 347 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 84/189 (44%), Gaps = 8/189 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V +R++ + ++N LKY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDVKD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L ER + L F +S+ + N+ + +++ E L Q+F+E VH Sbjct: 68 YRQ---LPAAERRAYDKILSFLVFLDSVQSANLP-NVSAYITANEVDLCLTIQSFQECVH 123 Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y++ ++ E+ +++ + A+ + Y + S + + + Sbjct: 124 SQSYSYMLDTIASPDERQEIIFQWKDDEHLLARNTFIGDLYNEFQQEQSRENFLRVLIAN 183 Query: 185 ILTRSLRFL 193 + + F Sbjct: 184 YILEGIYFY 192 >gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] Length = 347 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ + Sbjct: 9 LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT ER + L F +S+ N+ AI +++ E L Q F+EAVHS Sbjct: 69 ---PLLTVGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHS 124 Query: 129 HTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++ Y++ ++ E+ ++ + A+ + Y + + + K + Sbjct: 125 QSYSYMLDTICEPQTRNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVKTLIANY 184 Query: 186 LTRSLRFL 193 + + F Sbjct: 185 ILEGIYFY 192 >gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori India7] Length = 341 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 5/191 (2%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 I +V+++++ + + L +KY WA + + N W EV M D Sbjct: 3 VSRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D + L+ +E++ R L +SL NN++ + +++PE L+RQA+E Sbjct: 63 DKRDY---LKLSVEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 EA+HSH + ++ S+ + E+++M+R + +K ++ Q Y + +P+ K Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELAKNPTEENILKALF 179 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 180 ANQILEGIYFY 190 >gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] Length = 342 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 91/193 (47%), Gaps = 5/193 (2%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 ++ I + + V D+++ + + L +KY WA + + + N W P EV M Sbjct: 2 DHLSRKKIYNPQSQEQVSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSM 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L+ E++ R L +SL NN++ I +++PE L+RQA Sbjct: 62 HGDKNHY---LHLSPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQA 118 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKR 180 +EEA+HSH++ ++ S+ + ++ M+R ++ K + Q Y + ++P+ + K Sbjct: 119 YEEALHSHSYAVMVESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSNNPTEYNLLKA 178 Query: 181 RRSRILTRSLRFL 193 + + + F Sbjct: 179 LFANQILEGIYFY 191 >gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] Length = 347 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ + Sbjct: 9 LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT ER + L F +S+ N+ AI +++ E L Q F+EAVHS Sbjct: 69 ---PLLTVGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHS 124 Query: 129 HTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++ Y++ ++ E+ ++ + A+ + Y + + + K + Sbjct: 125 QSYSYMLDTICEPQTRNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVKTLIANY 184 Query: 186 LTRSLRFL 193 + + F Sbjct: 185 ILEGIYFY 192 >gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium beijerinckii NCIMB 8052] gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii NCIMB 8052] Length = 344 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 88/190 (46%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + KR++N + ++N +KY W + Y NN W+P EV + DL Sbjct: 6 KPLFNELGDREISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLSQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L ++ER+ + L F +S+ N+ I +++ E L Q+F+EAV Sbjct: 66 DYQN---LLEEERIAYDKILSFLIFLDSIQTANL-SNINNYITASEINLCLTIQSFQEAV 121 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E E+ +++ + + + Y + + +P+ + + + Sbjct: 122 HSQSYSYMLDSICSPEKRNEILYQWKDDDILLKRNKFIGDLYNEFIENPTEYNLLRTLMA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGIYFY 191 >gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga mimivirus] gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] Length = 417 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 5/151 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L+ +S+ + P+KY W+ Y N+W EV + D+ W N L+DD+R Sbjct: 98 KEPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWN--NHLSDDDRN 155 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+++ +V NI + + E Q E H + ++T+ Sbjct: 156 FIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAMENAHGEMYSLMLTTFVK 215 Query: 141 D---EGELFNMYREVPSITAKANWALQYTQT 168 D +L N + +PSI KA+W ++ ++ Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKS 246 >gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata obscuriglobus UQM 2246] Length = 332 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 5/165 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P++Y +E Y A N W EV DLA + + +T ER +I R + FFA+ Sbjct: 10 TLRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLRGR--VTPAERHLIHRLVAFFATG 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMY 149 +S+V NN+VL +Y+H++ PE R YL RQ +EEA+H + ++ + D F Sbjct: 68 DSIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAV 127 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +PSI KA++ ++ ++ RR+ +L C Sbjct: 128 DNIPSIKLKADFCFKWIDSIEGLDRLETRAHRRAFLLNLVCFAAC 172 >gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] Length = 347 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 5/192 (2%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + G I + D+R+ + + L +KY WA + + + +N W P EV M Sbjct: 8 SLGRKKIYNPQSAEPAKDRRIFGGNPTGMFDLNQIKYQWAHKIWKTMLHNTWFPEEVSMH 67 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L+ E++ R L +SL NN++ I +++PE L+RQA+ Sbjct: 68 GDKTHY---LKLSTQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRR 181 EEA+HSH++ ++ S+ + E++ M+R ++ K + Q Y + + K Sbjct: 125 EEALHSHSYAVMVESISANSDEIYEMWRTDEALKNKNDCVAQVYMDLAHTQTERNLLKAL 184 Query: 182 RSRILTRSLRFL 193 + + + F Sbjct: 185 VANQILEGIYFY 196 >gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D12] Length = 348 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ +++++ +++ L +K+ WA + Y + N W+P +V Sbjct: 1 MKAAVDRKRLFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NN+ I +++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNLP-NISDYITAPEVNLLLSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q F+EA+HS ++QYII S+ E +++ +R+ + + + Q Y + S Sbjct: 117 QTFQEAIHSQSYQYIIESILPKESRDLIYDKWRDDKVLFERNRFIAQIYQDFIEETSDQN 176 Query: 177 WNKRRRSRILTRSLRFLC 194 + K + L SL F Sbjct: 177 FAKVLIANYLLESLYFYN 194 >gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] Length = 332 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 4/176 (2%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 D R+ S + +L PL + WA+ +N W P EVP+ +D+ W K LT++ Sbjct: 2 KRDHRLFGPPSLEAIELFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHEK--LTEE 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER LGFF ESLV N+VLAI+ ++ PE R YL RQ +EEA H+ F+Y++ + Sbjct: 60 ERHAASLLLGFFNPMESLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKT 119 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FHYWNKRRRSRILTRSLRF 192 L +D ++F +REVP++ AK + TQ L + + +L + + Sbjct: 120 LPVDREKVFAAHREVPAVRAKEAFQTALTQALLQQHPLDLETRSGQEALLKNLVGY 175 >gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] Length = 348 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M+ P+ E ++V +R+LN +++N +KY W Y A NN W+P E+ Sbjct: 1 MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + + L+ ER + L F +SL + N+ I +++ E L Sbjct: 61 NLNQDKSDY---LNLSLAERSAYDKILSFLVYLDSLQSANLP-NIASYVTANEVNLCLSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHY 176 Q F+E +HS ++ Y++ S+ E E+ ++ + + + Y + L Sbjct: 117 QTFQECIHSQSYSYMLDSICSPEQRNEILYQWKYDEHLLKRNTFIGHLYNEFLEYQDKQS 176 Query: 177 WNKRRRSRILTRSLRFL 193 + K + + + F Sbjct: 177 FLKVCIANFILEGIYFY 193 >gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] Length = 348 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M+ + + + +V +RM+N + ++N LKYGW + Y A NN W+P E+ Sbjct: 1 MSESLKRKALFNAQGDTDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + DL + L + + + L F +S+ N+ I ++ E L Sbjct: 61 NLGQDLKDY---PKLEPAVKTALDKTLSFLIFLDSIQTANLP-NIGEVITANEINLCLTI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+EAVHS ++ Y++ S E+ ++E P + + + Y + + + Sbjct: 117 QAFQEAVHSQSYSYMLDSFCSPDQRTEILYQWKEDPRLLKRNEFIGGLYNEFIEQRTPVQ 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLIANYILEGIYFY 193 >gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 347 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 80/190 (42%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + + +RM+ + ++N +KY WA Y A NN W+P E+ + D+ Sbjct: 7 KSLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L+ ER + L F +S+ N+ I ++++ E L Q F+EAV Sbjct: 67 DYRN---LSAAEREAFDKILSFLVFLDSIQTANLPC-IGQYITANEVNLCLTIQGFQEAV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ + ++E + + + Y + + + Sbjct: 123 HSQSYSYMLDSICSPVERDRILYQWKEDGHLLKRNTFIGNLYNEFQERKDDITLLRVMMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] Length = 347 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 79/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + V+ +RM+ + ++N +KY W Y A NN W+P E+ M D+ Sbjct: 7 KPLFNPQGDTEVNLRRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L + ER + L F +S+ N+ I ++++ E L Q F+EAV Sbjct: 67 DY---PELPEAERTAYDKILSFLIFLDSIQTANLP-NIGQYITANEVNLCLTIQGFQEAV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ + +++ + + + + Y + + + Sbjct: 123 HSQSYSYMLDTICSPVERNTILYQWKDDEHLLRRNTFIGELYNEFQDKKDAQTLLRVMMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] Length = 326 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 11/175 (6%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + + P+KY W+ Y W E+ D +K L DE+ Sbjct: 7 NEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFKK---LNQDEQR 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FF++S+++V N+ + + E + Q E +HS + I ++ Sbjct: 64 FIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQIDNIIE 123 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E + N VP I AK +W L++ ++ S + R +++++ L F Sbjct: 124 DVQERKDILNSIETVPCIKAKTDWMLKWVKSEES-----FATRMVAQVISEGLFF 173 >gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus] gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream iridovirus] Length = 312 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W K LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + LF Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + ++P + AKA WA Q+ P I TR L F Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP------------IATRLLAFAA 154 >gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor alocis ATCC 35896] Length = 348 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + + + +RM+N + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MVEEIKRKQLFNENGDIELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ +++ L +E+ + L F +SL N+ + ++ E L Sbjct: 61 NLTQDIKDYRN---LEIEEKEAYDKILSFLIFLDSLQTANLP-NVGEFITANEVNLCLTI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHY 176 QA++EA+HS ++ YI+ S+ E E+ +++ P + A+ + QY + + + Sbjct: 117 QAYQEAIHSQSYGYILDSICSPEERTEILYQWKDDPFLLARNKFIGDQYNDFYYNRTKYN 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LVKTVIANYILEGIYFY 193 >gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper iridovirus] Length = 312 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W K LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + LF Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + ++P + AKA WA Q+ P I TR L F Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP------------IATRLLAFAA 154 >gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] Length = 349 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 8/196 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A + + + ++M+ + ++N ++Y W + Y A NN W+P E+ Sbjct: 3 AKKLKRNALFNPSGDTEIRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEIN 62 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + L + ER + L F +SL +NN+ I +++ E L Q Sbjct: 63 LTQDTKDY---PLLDEAERTAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYW 177 AF+E VHS ++ Y++ ++ E ++ ++ + + + Y + S Sbjct: 119 AFQECVHSQSYSYMLDTICSPEKRNDILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTL 178 Query: 178 NKRRRSRILTRSLRFL 193 K + + + F Sbjct: 179 MKTLIANYILEGIYFY 194 >gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] Length = 344 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E ++ +++++ +++ L +K+ WA + Y + N W+P +V + D + Sbjct: 6 LFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKVDLTQDKNDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ LT ER L F +S+ NN+ I +++ PE L Q F+EA+HS Sbjct: 66 EN---LTVPEREAYDGILSFLIFLDSIQTNNLP-NISDYITAPEVNLLLSIQTFQEAIHS 121 Query: 129 HTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++QYII S+ E +++ +R+ + + + Q Y + S + K + Sbjct: 122 QSYQYIIESILPKESRDLIYDKWRDDKVLFERNRFIAQIYQDFIEETSDQNFAKVLIANY 181 Query: 186 LTRSLRFLC 194 L SL F Sbjct: 182 LLESLYFYN 190 >gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 347 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 84/191 (43%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P+ +V ++RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 6 RKPLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV 65 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ++ L+ E+ + L F +S+ N+ + +++ E L QAF+EA Sbjct: 66 KDYR---RLSQAEKNAYDKTLSFLIFLDSIQTANLP-NVGDYITANEVNLCLTIQAFQEA 121 Query: 126 VHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++ Y++ S+ + ++ ++ + + + Y ++ + K Sbjct: 122 LHSQSYSYMLDSICSSQERNDILYQWKNDARLLERNKFIGDLYNDFITHHDGIHLMKTMM 181 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 182 ANYILEGIYFY 192 >gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella lenta DSM 2243] gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243] gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] Length = 347 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L ER + L F +SL + N+ A+ +++ E L Q F+E V Sbjct: 67 DYRK---LPAAERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++E + A+ + Y Q S + + Sbjct: 123 HSQSYSYMLDTICEPQERNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEALARVLVA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGVYFY 192 >gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] Length = 348 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 82/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + + + V++ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MEDKLKRNTLFNPSGDVDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLPT-VSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+E +HS ++ Y++ ++ E ++ ++ + + + Y + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQWKTDEHLLNRNKFIGDCYNEFHEKRDKFS 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLIANFILEGIYFY 193 >gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 344 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + E ++ ++++ +++ L ++ WA + Y + N W+P +V + D Sbjct: 3 RKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQDK 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA Sbjct: 63 NDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEA 118 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ + +++ +R+ + + ++ + Y + S + K Sbjct: 119 IHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFAKVII 178 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 179 ANYLLESLYFYN 190 >gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] Length = 354 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 16 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 76 RN---LSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 131 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E ++ +++ + + + QY S + K + Sbjct: 132 QSYSYILDTICSPEERTDILYQWKDDEFLLERNRFIGDQYNDFFEEKSERNFMKALIANY 191 Query: 186 LTRSLRFL 193 + + F Sbjct: 192 ILEGIYFY 199 >gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] Length = 344 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E ++ ++R++ +++ L +K+ WA + Y + N W+P +V + D + Sbjct: 6 LFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ LT ER L F +S+ NN+ I +++ PE L Q F+EA+HS Sbjct: 66 EN---LTVPEREAYDGILSFLIFLDSIQTNNVP-NISDYVTAPEVNLLLSIQTFQEAIHS 121 Query: 129 HTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++QYII S+ E +++ +R+ + + + Q Y + S + K + Sbjct: 122 QSYQYIIESILPKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEEASDKNFAKVLVANY 181 Query: 186 LTRSLRFLC 194 L SL F Sbjct: 182 LLESLYFYN 190 >gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna ATCC 29328] gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna ATCC 29328] Length = 354 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 16 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 76 RN---LSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 131 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E ++ +++ + + + QY S + K + Sbjct: 132 QSYSYILDTICSPEERTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANY 191 Query: 186 LTRSLRFL 193 + + F Sbjct: 192 ILEGIYFY 199 >gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] Length = 348 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + ++ KRM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLKRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLPT-VSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+E +HS ++ Y++ ++ E ++ ++ + + + Y + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQWKTDEHLLNRNKFIGDCYNEFHEKRDKFS 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLIANFILEGIYFY 193 >gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] Length = 347 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L ER + L F +SL + N+ A+ +++ E L Q F+E V Sbjct: 67 DYRK---LPASERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ ++ ++E + A+ + Y Q S + + Sbjct: 123 HSQSYSYMLDTICEPQERNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEALARVLVA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGVYFY 192 >gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] Length = 347 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + +R++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 9 LFNEHGDIELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 69 RN---LSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 124 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E ++ +++ + + + QY S + K + Sbjct: 125 QSYSYILDTICSPEERTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANY 184 Query: 186 LTRSLRFL 193 + + F Sbjct: 185 ILEGIYFY 192 >gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] Length = 348 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 81/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + + + +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNQLKRNTLFNPSGDIELRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLEKAERTAYDKILSFLVFLDSLQSNNLPT-LSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+E +HS ++ Y++ ++ E ++ ++ + + + Y + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQWKTDEHLLNRNKFIGDCYNEFHEKRDKFS 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLIANFILEGIYFY 193 >gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] Length = 348 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 81/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + ++ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLPT-VSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+E +HS ++ Y++ ++ E ++ ++ + + + Y + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQWKTDEHLLNRNKFIGDCYNEFHEKRDKFS 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLIANFILEGIYFY 193 >gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella denticola F0289] gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola F0289] Length = 348 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 81/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + ++ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLPT-VSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+E +HS ++ Y++ ++ E ++ ++ + + + Y + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQWKTDEHLLNRNKFIGDCYNEFHEKRDKFS 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLIANFILEGIYFY 193 >gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus prevotii DSM 20548] gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM 20548] Length = 352 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 84/188 (44%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + +++ +R++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEDGDIDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 RK---LDKHEKKAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E + +++E + + + QY + L + + K + Sbjct: 130 QSYSYILDTICSPEERTRILYLWKEDEHLLKRNEFIGDQYNEFLENDDEFRFMKVLIANY 189 Query: 186 LTRSLRFL 193 + + F Sbjct: 190 ILEGIYFY 197 >gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. 3_1_5R] gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] Length = 344 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E ++ ++R++ +++ L +K+ WA + Y + N W+P +V + D + Sbjct: 6 LFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ LT ER L F +S+ NN+ I +++ PE L Q F+EA+HS Sbjct: 66 EN---LTVPEREAYDGILSFLIFLDSIQTNNVP-NISDYVTAPEVNLLLSIQTFQEAIHS 121 Query: 129 HTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++QYII S+ E +++ +R+ + + + Q Y + S + K + Sbjct: 122 QSYQYIIESILPKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEETSDRNFAKVLVANY 181 Query: 186 LTRSLRFLC 194 L SL F Sbjct: 182 LLESLYFYN 190 >gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis] Length = 289 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 19/141 (13%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DL W + LT +E+ I L FFA+S+ +V N+ + + PE R + Sbjct: 2 EEVDLSQDLYQWVN---LTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAF 58 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS + ++ + D E LFN +P + KA WA+++ Q+ Sbjct: 59 YGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQS----- 113 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 R + F C Sbjct: 114 --------SGSFAERIVSFAC 126 >gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 346 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 82/191 (42%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + V + ++M+N + ++N +KY W + Y + NN W+P E+ M D+ Sbjct: 5 RKALFNERGDVELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQDI 64 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +++ L E+ + L F +S+ N+ I + + E L QA++EA Sbjct: 65 KDYRN---LDFHEKKAYDKILSFLIFLDSIQTANLP-NISDYTTANEVNLILTIQAYQEA 120 Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++ YI+ ++ E E+ +R+ + + + Y + + + + K Sbjct: 121 IHSQSYSYILDTIASPEERTEILYQWRDDEHLLNRNKFIGNIYNDFVENHTKETYMKTVM 180 Query: 183 SRILTRSLRFL 193 + + F Sbjct: 181 GNYILEGIYFY 191 >gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] Length = 339 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 5/191 (2%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 I + + ++ D+R+ D + +KY WA + + N W P EV M D Sbjct: 2 ARKTIYNPDSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREVQMTGD 61 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +K LT E+ M L +SL NN++ I +++ PE L RQ++EE Sbjct: 62 AKDYK---YLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSRQSYEE 118 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFHYWNKRRRS 183 A HS ++ ++ S+ + E+++M++ + K N+ LS + + Sbjct: 119 ANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSDNITDEKMVLAMFA 178 Query: 184 RILTRSLRFLC 194 + L F Sbjct: 179 NQILEGLYFYA 189 >gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 352 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEDGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L + E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 RN---LDEHEKRAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E + +++E + + + QY + L + + K + Sbjct: 130 QSYSYILDTICSPEERTRILYLWKEDEHLLKRNEFIGEQYNEFLKNDDEFRFMKALVANY 189 Query: 186 LTRSLRFL 193 + + F Sbjct: 190 ILEGIYFY 197 >gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus] gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus] Length = 313 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y A + W EV + D + SK L DDER IK L FFA Sbjct: 5 RKVLFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDFTSK--LNDDERYFIKHVLAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++S+V N++ + +++ E + + +Q E VH+ + +I L DE E L N Sbjct: 63 AADSIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + +P + K +WA+++ + ++ + +R + + + F Sbjct: 123 AFERMPCVRKKTDWAMKWINSSTA----TFAERMVAFAIVEGVFF 163 >gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens] Length = 285 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 1 EEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 57 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173 Q E VHS + +I + D + LFN +P + KA+WAL++ S Sbjct: 58 YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS-- 115 Query: 174 FHYWNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 116 --TFGERVVAFAAVEGVFF 132 >gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] Length = 349 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 8/195 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N + + E ++ +RM+ + ++N ++Y WA + Y A NN W+P E+ + Sbjct: 4 NELKRNALFNPEGDTDLRLRRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINL 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L ER + L F +SL +NN+ I +++ E L QA Sbjct: 64 AQDTKDY---PRLDKAERAAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQA 119 Query: 122 FEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWN 178 F+E VHS ++ Y++ ++ E ++ ++ + + + Y + Sbjct: 120 FQECVHSQSYSYMLDTICSPEERNDILYQWKTDEHLLRRNTFIGDCYNEFHDKRDKFSLM 179 Query: 179 KRRRSRILTRSLRFL 193 K + + + F Sbjct: 180 KTCVANFILEGIYFY 194 >gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] Length = 347 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 83/194 (42%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + P+ V +RM+N + ++N +KY W + Y A NN W+P E+ + Sbjct: 3 DLVRKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLN 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ ++ L + E+ + L F +S+ N+ + +++ E L QAF Sbjct: 63 QDVKDYR---RLREAEKTAYDKTLSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAF 118 Query: 123 EEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +EAVHS ++ Y++ S+ + ++ +++ + + + Y + + K Sbjct: 119 QEAVHSQSYSYMLDSICSPQERTDILYQWKDDERLLNRNKFIGDLYNDFQTHRDGRHLMK 178 Query: 180 RRRSRILTRSLRFL 193 + + + F Sbjct: 179 TMMANYILEGIYFY 192 >gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] Length = 347 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 9 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 69 RN---LSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 124 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E ++ +++ + + + QY S + K + Sbjct: 125 QSYSYILDTICSPEERTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANY 184 Query: 186 LTRSLRFL 193 + + F Sbjct: 185 ILEGIYFY 192 >gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus] Length = 312 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W K LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 A ++ +V +N+V + L PE R + Q + +H+ + +I +L E + LF Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + ++P + AKA WA Q+ P I TR L F Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP------------IATRLLAFAA 154 >gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] Length = 349 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 80/195 (41%), Gaps = 8/195 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + + + + ++ +RM+ + ++N +KY W + Y A NN W+P E+ + Sbjct: 4 DKLQRNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINL 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + L ER + L F +SL +NN+ I +++ E L Q Sbjct: 64 AQDIKDY---PNLPQAERTAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQT 119 Query: 122 FEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWN 178 F+E +HS ++ Y++ ++ E ++ ++ + + + Y + Sbjct: 120 FQECIHSQSYSYMLDTICSPEERNDILYQWKTDEHLLKRNTFIGDCYNEFQEKRDKFALM 179 Query: 179 KRRRSRILTRSLRFL 193 K + + + F Sbjct: 180 KACMANFILEGIYFY 194 >gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] Length = 347 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 78/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+ + ++N ++YGW + Y A NN W+P E+ + D Sbjct: 7 KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDRK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ + N+ I +++ E L Q F+E V Sbjct: 67 DY---GELLGKERQAYDKILSFLVFLDSIQSANLPC-IGEYITANEINLCLSIQTFQECV 122 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E E+ ++ + + + + Y + K + Sbjct: 123 HSQSYSYMLDTICSPEKRNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTLLKVMMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 347 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 84/191 (43%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + + ++ ++M+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 6 RKQLFNENGDIELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDI 65 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ++ L+ +E+ + L F +S+ N+ I +++ E L QA++EA Sbjct: 66 KDYRK---LSKEEKNAYDKILSFLVFLDSIQTANLP-NIGEYITANEVNLCLTIQAYQEA 121 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++ YI+ ++ E + +++ + A+ + Y + S K Sbjct: 122 IHSQSYGYILDTICSPEERTNILYQWKDDELLLARNKFIGDLYNEFYYDRSDFNLVKTAV 181 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 182 ANYILEGIYFY 192 >gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 369 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 93/193 (48%), Gaps = 8/193 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A + + E + +R++ + ++ +L +KY WA++ Y + NN W+P E+P Sbjct: 24 AMQLKRTRLFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIP 83 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD + + L+DDER + L F +SL+ +N+ I +++ PE L Sbjct: 84 LADDARQY---DLLSDDERRSYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVH 139 Query: 121 AFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYW 177 AF+EAVHS ++ Y++ S+ +++N +R + + + + + + +P+ Sbjct: 140 AFQEAVHSQSYGYVLDSVVNPATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRNL 199 Query: 178 NKRRRSRILTRSL 190 K + + + Sbjct: 200 MKTIVANYILEGV 212 >gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] Length = 348 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + ++++++++ +++ L +KYGWA Y + N W+P ++ + D Sbjct: 7 RKKLFNPSGIDSLNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKIDLTQDR 66 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + N LT+ E+ L F +S+ NNI I +++ PE L Q F+EA Sbjct: 67 VDY---NNLTNYEKEAYDGILSFLIFLDSIQTNNIP-NISDYITAPEINLILSIQTFQEA 122 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +HS ++QYII S+ E +++ +RE + + + + Y L +P + + Sbjct: 123 IHSQSYQYIIESILPKETRNYIYDKWREDKILFERNRYIAEIYQNFLDNPDDKNFARVIV 182 Query: 183 SRILTRSLRFLC 194 + L S+ F Sbjct: 183 ADYLLESIYFYN 194 >gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body iridovirus] Length = 312 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W K LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 A ++ +V +N+V + L PE R + + E +H+ + +I +L E + LF Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + ++P + AKA WA Q+ P I TR L F Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP------------IATRLLAFAA 154 >gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] Length = 352 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 83/188 (44%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNENGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 RK---LDQHEKRAFDRILSFLTYLDSIQTANLP-NLQTYVTANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E + +++E + + + QY + L + + + + Sbjct: 130 QSYSYILDTICSPEERTRILYLWKEDDHLLRRNEFIGEQYNEFLVDDNEFKFVRALIANY 189 Query: 186 LTRSLRFL 193 + + F Sbjct: 190 ILEGIYFY 197 >gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 347 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 81/194 (41%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + P+ V +RM+N + ++N +KY W + Y A NN W+P E+ + Sbjct: 3 DLLRKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLN 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ ++ L + E+ + L F +S+ N+ + +++ E L QAF Sbjct: 63 QDVKDYR---RLHEAEKTAYDKTLSFLIFLDSIQTANLP-NVGEYVTANEVNLCLTIQAF 118 Query: 123 EEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +EAVHS ++ Y++ S+ ++ +++ + + + Y + K Sbjct: 119 QEAVHSQSYSYMLDSICSPQERNDILYQWKDDERLLNRNKFIGDLYNDFQEHKDGLHLMK 178 Query: 180 RRRSRILTRSLRFL 193 + + + F Sbjct: 179 TMMANYILEGIYFY 192 >gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 352 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 84/188 (44%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEDGDIDLGKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 RK---LDQYEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E + +++E + + + QY + L + + K + Sbjct: 130 QSYSYILDTICSPEERTRILYLWKEDEHLLKRNEFIGEQYNEFLENDDEFRFMKVLVANY 189 Query: 186 LTRSLRFL 193 + + F Sbjct: 190 ILEGIYFY 197 >gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis NCTC 9343] gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis NCTC 9343] Length = 349 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++M+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTETRFRKMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL +NN+ + +++ E L QAF+E V Sbjct: 69 DY---PHLTPAERTAYDKILSFLVFLDSLQSNNLPT-LSEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E ++ ++ + + + Y + + K + Sbjct: 125 HSQSYSYMLDSICSPEERNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMKTLIA 184 Query: 184 RILTRSLRFL 193 + + F Sbjct: 185 NYILEGIYFY 194 >gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] Length = 361 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 2/172 (1%) Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+++N R + LLPLKY WA+E Y + NHW P ++ M D+ WK +++ ER Sbjct: 26 KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I +G+F+++E +V +NI+ I ++ PE + L R A EE VH+ + Y+I+SLG+ Sbjct: 86 IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E M+ ++P+I K + + + L + + + F Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLT-ITENKQKFAKNVFLF 196 >gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] Length = 347 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E + V ++M+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L ER + L F +S+ N+ I +++ E L Q F+EAV Sbjct: 67 DYK---MLPAAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ + + ++E + + + Y S + Sbjct: 123 HSQSYSYMLDTICEPQERNAVLYQWKEDRHLLERNEFIGNLYNAFQEEKSPEMLACTLIA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus] gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple nucleopolyhedrovirus] Length = 313 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 9/165 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + W Y A + W EV M D ++SK L DDER IK L FFA Sbjct: 5 RKVLKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFESK--LNDDERYFIKHVLAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++S+V N++ + R++ E + + Q E VH+ + +I L DE E L N Sbjct: 63 AADSIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + VP + KA WA+++ ++ ++ +R + + + F Sbjct: 123 AFEHVPCVRKKAQWAMKWIESDTA----TLAERMVAFAIVEGVFF 163 >gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] Length = 347 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ ++ +RM+ + ++N L+Y W Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPGGDTDIRLRRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT++ER + L F +S+ N+ I +++ E L Q F+E V Sbjct: 67 DY---PNLTENERTAYNKILSFLVFLDSIQTANLPC-IGEYITANEINLCLSIQTFQECV 122 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ ++ ++ + + + Y + K + Sbjct: 123 HSQSYSYMLDSICSPVERNDILYQWKNDAHLLRRNTFIGDLYNEFQEKKDDFTLLKVMMA 182 Query: 184 RILTRSLRFL 193 + + F Sbjct: 183 NYILEGIYFY 192 >gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] Length = 345 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 91/185 (49%), Gaps = 8/185 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E + +R++ + ++ +L +KY WA++ Y + NN W+P E+P+ DD + Sbjct: 8 LFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQY 67 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+DDER + L F +SL+ +N+ I +++ PE L AF+EAVHS Sbjct: 68 ---DLLSDDERRSYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEAVHS 123 Query: 129 HTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++ Y++ S+ +++N +R + + + + + + +P+ K + Sbjct: 124 QSYGYVLDSVVNPATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRNLMKTIVANY 183 Query: 186 LTRSL 190 + + Sbjct: 184 ILEGV 188 >gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo sapiens] gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) isoform 3 [Pan troglodytes] gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form [Homo sapiens] gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo sapiens] Length = 299 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 10/138 (7%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 16 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E VHS + +I + D + LFN +P + KA+WAL++ S Sbjct: 73 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 129 Query: 175 HYWNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 130 -TFGERVVAFAAVEGVFF 146 >gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis 638R] gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis 638R] Length = 349 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++M+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL +NN+ + +++ E L QAF+E V Sbjct: 69 DY---PHLTPAERTAYDKILSFLVFLDSLQSNNLPT-LSEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E ++ ++ + + + Y + + K + Sbjct: 125 HSQSYSYMLDSICSPEERNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMKTLIA 184 Query: 184 RILTRSLRFL 193 + + F Sbjct: 185 NYILEGIYFY 194 >gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 352 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 8/190 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 PI + + +L + ++ L +KY WA + Y N W+P V + D+ Sbjct: 13 PIFNPNGNDDPTKRGILYGNTTNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLD 72 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LT+DER L F +S+ NI I ++ PE L A++EA+H Sbjct: 73 YKE---LTEDERQAYDEILSFLVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIH 128 Query: 128 SHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S ++ Y I S+ + ++ +++ P + + + Y + L P+ + + Sbjct: 129 SQSYGYTIESVIPPQHRETVYYWWKKDPILFERNKYIADIYQKFLEEPTMENYGEVLVGN 188 Query: 185 ILTRSLRFLC 194 L L F Sbjct: 189 YLLEGLYFYN 198 >gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] Length = 349 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E + ++M+ + ++N + Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTELRLRKMIGGNTTNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDKAERTAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E ++ ++ + + + Y + S K + Sbjct: 125 HSQSYSYMLDSICSPEERNDILYQWKTDEHLLKRNTFIGNCYNEFQESQDSFTLMKTLIA 184 Query: 184 RILTRSLRFL 193 + + F Sbjct: 185 NYILEGIYFY 194 >gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] Length = 347 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 81/194 (41%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + + + ++ +RM+ +++N ++Y W + Y A NN W+P E+ + Sbjct: 3 KLQRNALFNPQGDTDLRLRRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLA 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ + L ER + L F +SL +NN+ I +++ E L Q F Sbjct: 63 QDIKDY---PNLPAAERKAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQTF 118 Query: 123 EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E VHS ++ Y++ ++ E ++ ++ + + + Y + ++ K Sbjct: 119 QECVHSQSYSYMLDTICSPEERNDILYQWKTDEHLLRRNTFIGDCYNEFQANRDKFCLMK 178 Query: 180 RRRSRILTRSLRFL 193 + + + F Sbjct: 179 ACVANFILEGIYFY 192 >gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis YCH46] gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis YCH46] Length = 349 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++M+ + ++N ++Y W + Y NN W+P E+ + D Sbjct: 9 NALFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL +NN+ + +++ E L QAF+E V Sbjct: 69 DY---PHLTPAERTAYDKILSFLVFLDSLQSNNLPT-LSEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E ++ ++ + + + Y + + K + Sbjct: 125 HSQSYSYMLDSICSPEERNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMKTLIA 184 Query: 184 RILTRSLRFL 193 + + F Sbjct: 185 NYILEGIYFY 194 >gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 2 [Callithrix jacchus] Length = 299 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 10/138 (7%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 16 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E VHS + +I + D + LFN +P + KA+WAL++ S Sbjct: 73 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 129 Query: 175 HYWNKRRRSRILTRSLRF 192 + +R + + F Sbjct: 130 -TFGERVVAFAAVEGVFF 146 >gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] Length = 359 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+ + ++N ++YGW Y A NN W+P E+ + D Sbjct: 19 KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDRK 78 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ + N+ I +++ E L Q F+E V Sbjct: 79 DY---GELLGKERQAYDKILSFLVFLDSIQSANLPC-IGEYITANEINLCLSIQTFQECV 134 Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ ++ E E+ ++ + + + + Y + K + Sbjct: 135 HSQSYSYMLDTICSPEKRNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTLLKVMMA 194 Query: 184 RILTRSLRFL 193 + + F Sbjct: 195 NYILEGIYFY 204 >gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen and kidney necrosis virus] gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen and kidney necrosis virus] Length = 312 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 18/168 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W K LT+ ER + L FF Sbjct: 2 DKYVLRPSD-PHLWAMYKKAVASFWTVEEVDLSTDVRHWTEK--LTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + LF Sbjct: 59 AMADGIVGDNLVCNFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + ++P + AKA WA Q+ I TR L F Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNA------------THKSIATRLLAFAA 154 >gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 339 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 15/176 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +LP+++ W+ Y +A + W EV + D W++K L +DER +K L FFA Sbjct: 7 RKVILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQNK--LNEDERHFLKHILAFFA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 S++S+V N++ + ++ E R + +Q F E VHS + +I DE E L N Sbjct: 65 SADSIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLN 124 Query: 148 MYREVPSITAKANWALQYTQT------LSSPSFHYWN----KRRRSRILTRSLRFL 193 + ++ + KA WAL++T++ L +P+ + N K+ S + R + F Sbjct: 125 AFNDIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFA 180 >gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] Length = 347 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 81/195 (41%), Gaps = 8/195 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + + + ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + Sbjct: 2 EQLQRNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINL 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + L ER + L F +SL +NN+ I +++ E L Q Sbjct: 62 AQDIKDY---PNLPPAERKAYDKILSFLVFLDSLQSNNLPT-ISEYITANEVNLCLHIQT 117 Query: 122 FEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWN 178 F+E VHS ++ Y++ S+ E ++ ++ + + + Y + + + Sbjct: 118 FQECVHSQSYSYMLDSICSPEERNDILYQWKTDEHLLRRNTFIGDCYNEFQAHRNKFCLM 177 Query: 179 KRRRSRILTRSLRFL 193 K + + + F Sbjct: 178 KACIANFILEGIYFY 192 >gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] Length = 355 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 17 LFNPDGDTDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDIKDY 76 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 L +ER + L F +S+ N+ I +++ E L Q F+EAVHS Sbjct: 77 ---PRLPAEERRAYDKILSFLIFLDSIQTANLP-HIGEYITANEINLCLSIQTFQEAVHS 132 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRI 185 ++ Y++ ++ + E+ ++E + + + Y + + S + + Sbjct: 133 QSYSYMLDTICEPQKREEILYQWKEDEHLLLRNEFIGSLYNEFQETKSARSLVRTLIANY 192 Query: 186 LTRSLRFL 193 + + F Sbjct: 193 ILEGVYFY 200 >gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] Length = 347 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 8/191 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + + ++ +RM+ + ++N +KY WA + Y A NN W+P E+ + D Sbjct: 6 RNSLFNPNGDTDLRLRRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDT 65 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + L ER + L F +SL +NN+ + +++ E L QAF+E Sbjct: 66 KDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLPS-LCEYITANEVNLCLHIQAFQEC 121 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRR 182 VHS ++ Y++ ++ E ++ ++ + + + Y + + K Sbjct: 122 VHSQSYSYMLDTICSPEQRNDILYQWKTDEHLLRRNTFIGNCYNEFHEKQDLYALMKTCI 181 Query: 183 SRILTRSLRFL 193 + + + F Sbjct: 182 ANFILEGIYFY 192 >gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] Length = 332 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y ++S EC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 71 LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + L+Y + ++ + + + + + Sbjct: 131 SMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAY 169 >gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 346 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + +R++N + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 8 LFNEKGDIETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDY 67 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ + L F +SL I + +++ E L Q ++E++HS Sbjct: 68 RE---LDKAEKTAYDKILSFLIYLDSLQTAQIP-KLQSYVTANEINLCLSIQGYQESIHS 123 Query: 129 HTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E E+ Y++ + + + QY + + + K + Sbjct: 124 QSYSYILDTICSPEEREEILYQYKDDEVLLKRNKFIGDQYQDFYENENLDNFMKALIANY 183 Query: 186 LTRSLRFL 193 + + F Sbjct: 184 ILEGIYFY 191 >gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] Length = 347 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 8/195 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N + + + +RM+ + ++N ++Y W + Y A NN W+P E+ + Sbjct: 2 NKLKRNALFNPSGDTEILHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINL 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L ER+ + L F +SL +NN+ + +++ E L QA Sbjct: 62 TQDTKDY---PLLDKAERVAYDKILSFLVFLDSLQSNNLPT-LSEYITANEVNLCLHIQA 117 Query: 122 FEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWN 178 F+E VHS ++ Y++ S+ E ++ ++ + + + Y + S + Sbjct: 118 FQECVHSQSYSYMLDSICSPEERNDILYQWKTDEHLLKRNTFIGNCYNEFQESQNGFALV 177 Query: 179 KRRRSRILTRSLRFL 193 K + + + F Sbjct: 178 KTLIANYILEGIYFY 192 >gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus] gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2) [shrimp white spot syndrome virus] gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus] gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus] Length = 413 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 6/158 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 52 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---LTQ 108 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 L DE + LFN + P+I K WA+ + Q+ + Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND 206 >gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 348 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + + ++ +RM+ + ++N ++Y WA + Y A NN W+P E+ Sbjct: 1 MDNKLKKNALFNPQGDTDLRQRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + L ER + L F +SL + N+ + ++ E L Sbjct: 61 NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANLPS-LTEFITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+E VHS ++ Y++ ++ E ++ ++ + + + Y + ++ Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEERNDILYQWKTDEHLLRRNTFIGDCYNEFYANNDKAS 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLIANYILEGIYFY 193 >gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 290 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 19/150 (12%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W EV M D + + LT +E+ IK L FFA+S+ +V N+V Sbjct: 1 MHESTFWTVEEVDMTFDCEHF---STLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSE 57 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQ 164 + E + + Q E +HS + +I +L D+ E LFN +PSI KA WA + Sbjct: 58 VQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQK 117 Query: 165 YTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + + + TR + F C Sbjct: 118 WIAS-------------DTSFDTRCVAFAC 134 >gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] Length = 339 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 15/176 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +LP+++ W Y +A + W EV + D W +K L + ER IK L FFA Sbjct: 7 RKVILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDWCTK--LNERERFFIKHILAFFA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFN 147 S++S+V N++ + + E R + +Q E VHS + +I +E EL N Sbjct: 65 SADSIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLN 124 Query: 148 MYREVPSITAKANWALQYTQT------LSSPSFHYWNKRRRS----RILTRSLRFL 193 + +V + KA WAL++T++ L +P W R ++ R + F Sbjct: 125 AFEDVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFA 180 >gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 347 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +++ + ++N + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 9 LFNENGDIDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K L + E+ + L F +S+ + + +++ E L Q+F+E++HS Sbjct: 69 K---ILDEAEKRAFDKILSFLIYLDSIQTAQLP-NLQAYITANEINLCLSIQSFQESIHS 124 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL-QYTQTLSSPSFHYWNKRRRSRI 185 ++ YI+ ++ E E+ Y ++ + + QY L+ + + Sbjct: 125 QSYSYILDTICSPEERTEILYQYINDKTLLERNKYITDQYAGFLNDKTKGNLMHALIANY 184 Query: 186 LTRSLRFL 193 + + F Sbjct: 185 ILEGIYFY 192 >gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus] Length = 328 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 6/158 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 28 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---LTQ 84 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 85 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 144 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 L DE + LFN + P+I K WA+ + Q+ + Sbjct: 145 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND 182 >gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium spinosum DSM 4136] Length = 361 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + KR++N R + LLPLKY WA++ Y NHW P ++ MQ D+ W Sbjct: 14 LDQDKAEAAFHAKRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQW 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 +S + + + ER +I +G+F+++E +V +NI + ++ PE + L R A EE +H+ Sbjct: 74 RSVDQVAEVERWIIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHA 133 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 + Y+I+SLG++ E M+ ++P+I K + + + L + + Sbjct: 134 DSLLYMISSLGINPHECEAMFEDIPTIVKKNAFVTRSSNALRRDLDLTQI-ENKRLLAKN 192 Query: 189 SLRF 192 F Sbjct: 193 IFVF 196 >gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus] Length = 349 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 6/158 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 37 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---LTQ 93 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 94 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 153 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 L DE + LFN + P+I K WA+ + Q+ + Sbjct: 154 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND 191 >gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] Length = 413 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 6/158 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---LTQ 108 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 L DE + LFN + P+I K WA+ + Q+ + Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND 206 >gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. sepedonicus] gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 331 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA + Y A N W P E+ + +D+A +K +TD+ER I + +F +E Sbjct: 15 LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAITFLMSYFNPNE 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 72 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + +++ + ++ + + + + + Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAY 170 >gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] Length = 374 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 107/194 (55%), Gaps = 5/194 (2%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++ L I G KR + D +++ R DV Q +P+KY E++L+A N W+P E+PM Sbjct: 24 SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 +D W + LT+ E + K N+ + +S++LV +N+ AI +H++ E RQY Q Sbjct: 84 EDKLQW-NTGLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142 Query: 123 EEAVHSHTFQYIITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 EE+ H ++ +I+ S GLDE ++FN+Y+EVP++T K NW L +T + + Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTL 202 Query: 180 RRRSRILTRSLRFL 193 +L + + Sbjct: 203 EANRALLEDLISYY 216 >gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 19/134 (14%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E +HS + ++ + D E LF+ VP + KA WAL++ S Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDGGES--------- 108 Query: 181 RRSRILTRSLRFLC 194 R + F C Sbjct: 109 ----FAERLIAFAC 118 >gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 348 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 8/197 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + + ++ +RM+ + ++N ++Y WA + Y A NN W+P E+ Sbjct: 1 MDNKLKKNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + L ER + L F +SL + N+ + ++ E L Sbjct: 61 NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANLPS-LTEFITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 QAF+E VHS ++ Y++ ++ E ++ ++ + + + Y + ++ Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEERNDILYQWKTDEHLLRRNTFIGDCYNEFYANNDKAS 176 Query: 177 WNKRRRSRILTRSLRFL 193 K + + + F Sbjct: 177 LMKTLMANYILEGIYFY 193 >gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] Length = 348 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVPM +D+ W L D ER ++ + FF ++ Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWA--ANLNDGERNLLTQIFRFFTQADIE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F + E ++ Sbjct: 82 VQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 141 KDKHDYMGQF 150 >gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 347 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 79/195 (40%), Gaps = 8/195 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + + + ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + Sbjct: 2 DQLKRNALFNPMGDTDLRLRRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINL 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L ER + L F +SL + N+ + +++ E L QA Sbjct: 62 TQDTKDY---PKLDKAERTAYDKILSFLVFLDSLQSTNLPS-LTEYVTANEVNLCLHIQA 117 Query: 122 FEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWN 178 F+E VHS ++ Y++ ++ E ++ ++ + + + Y + + Sbjct: 118 FQECVHSQSYSYMLDTICSPEERNDILYQWKTDEHLLKRNTFIGDLYNEFHEKRDRYTLV 177 Query: 179 KRRRSRILTRSLRFL 193 K + + + F Sbjct: 178 KTCIANYILEGIYFY 192 >gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 19/134 (14%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E +HS + ++ + D E LF+ VP + KA WAL++ S Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDGGES--------- 108 Query: 181 RRSRILTRSLRFLC 194 R + F C Sbjct: 109 ----FAERLIAFAC 118 >gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei str. Twist] gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei TW08/27] gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma whipplei TW08/27] gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str. Twist] Length = 327 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y WA + Y A N W P E+ + +D+A +K +T +E+ + + +F +E Sbjct: 14 LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFKK---MTHEEKHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D E ++ + EVP Sbjct: 71 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + ++Y + ++ + + + + + Sbjct: 131 SMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAY 169 >gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 172 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 VNQ+LP K+ W+ +L + N+W P E+ M D+ WK + L+DDE+L++KR LGFFA Sbjct: 15 VNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWKG-DDLSDDEKLLVKRCLGFFA 73 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T S GL E+F Y+ Sbjct: 74 GSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEAYQ 133 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 + SI AK ++ + T ++ F + S Sbjct: 134 NIESIKAKDDFLMGITTDVNRQGFSTKTSEGKRIFKKSS 172 >gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter butzleri RM4018] gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter butzleri RM4018] Length = 339 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 5/186 (2%) Query: 11 QAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + +++D+R+ SD + +KY WA + + N W P EV M D +K Sbjct: 7 YNPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK 66 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS Sbjct: 67 ---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSK 123 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFHYWNKRRRSRILTR 188 ++ ++ S+ + +++M++ + K + + + LS + + Sbjct: 124 SYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSGDIDDRKIVLALFANQILE 183 Query: 189 SLRFLC 194 L F Sbjct: 184 GLYFYA 189 >gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 19/134 (14%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FF +S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 E +HS + ++ + D E LF+ VP + KA WAL++ S Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDGGES--------- 108 Query: 181 RRSRILTRSLRFLC 194 R + F C Sbjct: 109 ----FAERLIAFAC 118 >gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] Length = 339 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 5/186 (2%) Query: 11 QAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + +++D+R+ SD + +KY WA + + N W P EV M D +K Sbjct: 7 YNPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK 66 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS Sbjct: 67 ---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSK 123 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFHYWNKRRRSRILTR 188 ++ ++ S+ + +++M++ + K + + + LS + + Sbjct: 124 SYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSGDIDDRKIVLALFANQILE 183 Query: 189 SLRFLC 194 L F Sbjct: 184 GLYFYA 189 >gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKSQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E +F+ + P I A W Q+ P+ + +R + F Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM----DPTKNSLGERLVGFAAVEGILF 168 >gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] Length = 346 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F+ + E ++ Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137 Query: 156 TAKANWALQY 165 K ++ + Sbjct: 138 KDKHDYMQTF 147 >gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E +F+ + P I A W Q+ P+ + +R + F Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM----DPTKNSLGERLVGFAAVEGILF 168 >gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus CB15] gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus NA1000] gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter crescentus CB15] gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter crescentus NA1000] Length = 347 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F+ + E ++ Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137 Query: 156 TAKANWALQY 165 AK ++ + Sbjct: 138 KAKHDYMQTF 147 >gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small Length = 334 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 66 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E +F+ + P I A W Q+ P + +R + F Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM----DPDRNTLGERLVGFAAVEGILF 175 >gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus Benin 97/1] Length = 327 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E +F+ + P I A W Q+ P + +R + F Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM----DPDRNTLGERLVGFAAVEGILF 168 >gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli subsp. xyli str. CTCB07] Length = 329 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 84/159 (52%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ E YL +Q +EEA H +F+Y++ + +D + +N + +VP Sbjct: 71 LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ +K + +++ + ++ + + + + + Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAY 169 >gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus OURT 88/3] gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75] gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1] Length = 334 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 66 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E +F+ + P I A W Q+ P + +R + F Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM----DPDRNTLGERLVGFAAVEGILF 175 >gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] Length = 352 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W SK L+D ER ++ + FF S+ Sbjct: 23 PFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWASK--LSDSERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F + + ++ Sbjct: 81 VQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYEAM 139 Query: 156 TAKANWA 162 K ++ Sbjct: 140 RDKHDFM 146 >gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] Length = 350 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D+ W SK L D+ER ++ + FF S+ Sbjct: 23 PFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWASK--LNDNERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E VH + ++ ++G+ E E F + E ++ Sbjct: 81 VQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYEAM 139 Query: 156 TAKANWALQY 165 K N+ ++ Sbjct: 140 RDKHNFMQKF 149 >gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium roseum DSM 5159] gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium roseum DSM 5159] Length = 328 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 6/173 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +R+L +L PL + WA+ A +N W P EVP+ DD+ W + L+D+ER Sbjct: 3 RRLLGGDPLAAVELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERR 60 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 ++ LGFF ESLV N++L++YR ++ PE R YL RQA+EEA H F+Y+I +L L Sbjct: 61 AVEMFLGFFNPMESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPL 120 Query: 141 DEGELFNMYREVPSITAKANWALQY-TQTLSSPSFHYWNKRRRSRILTRSLRF 192 D +F ++ E P++ AK + Q Q L +P + R++ + + Sbjct: 121 DRERVFGLHVEHPAVAAKELFQRQLAEQWLVTPDVE--SVEGLQRLVRNLVGY 171 >gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] Length = 313 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 17/166 (10%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + +E Y A W EV + D ++ L +D+R I LGFF+ Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++S+V N++ + + + E + QA E VH+ + +I +L D+ + + N Sbjct: 63 AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + +P + K +WAL++ K ++ + R + F Sbjct: 123 AFDNIPCVRKKDDWALKW------------TKNKKLTLAERLVAFA 156 >gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] Length = 357 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 81/159 (50%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA E Y A N W P E+ + +DLA ++ ++D+ER + + +F +E Sbjct: 45 LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFE---RMSDEERHALTFLMSYFNPNE 101 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H +F+Y++ + +D + + VP Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ AK + +++ + ++ + + + + + Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAY 200 >gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] Length = 348 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W L D ER ++ + FF S+ Sbjct: 23 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWA--ANLNDKERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 VA+N + R E + L A E +H + ++ ++G+ E E F + E ++ Sbjct: 81 VADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 139 Query: 156 TAKANWALQY 165 K ++ + Sbjct: 140 RDKHDFMQTF 149 >gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D W++ LT DE+ Sbjct: 6 EEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 I L FFA+S+ +V N+ + + E R + Q E +HS Sbjct: 63 FISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSE 111 >gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] Length = 313 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 17/166 (10%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y A + W EV + D + K LTD+ER I++ L FFA Sbjct: 5 RKVLFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++S+V NI+ + R + E + + +Q E +H+ + +I +L DE + L N Sbjct: 63 AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + +P + KA WA++Y + + + R + F Sbjct: 123 GFESMPCVRRKAEWAMKYIENENV------------TLAERLIAFA 156 >gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E +F+ + P I A W Q+ P+ + +R + F Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM----DPARNSLGERLVGFAAVEGILF 168 >gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] Length = 349 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D+ W S L D+ER ++ + FF ++ Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAS--TLNDNERNLLTQIFRFFTQADIE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L E +H + ++ ++G+ E E F + E ++ Sbjct: 82 VQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 141 RDKHDYMGQF 150 >gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana] Length = 231 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D W+ N LT+DER Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 IK L FFA+S+ +V N+ + E R + Q E +HS Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSE 112 >gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA2] gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL044PA1] gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA3] gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium sp. P08] Length = 324 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P EV + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + +++ + ++ + + + + + Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAY 168 >gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula bermudensis HTCC2503] gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula bermudensis HTCC2503] Length = 340 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W +K LTD ER ++ + FF S+ Sbjct: 20 PFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWANK--LTDKERNLLTQIFRFFTQSDVE 77 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + E R L + E +H + ++ ++G+ E E F+ + + ++ Sbjct: 78 VGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYEAM 136 Query: 156 TAKANWALQY 165 AK ++ ++ Sbjct: 137 AAKHDYLGRF 146 >gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] Length = 350 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 P +Y WA++ + HWMP E+P+ +DL W SK L D ER ++ + FF Sbjct: 20 FAYKPFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWASK--LNDRERNLLTQIFRFFTQ 77 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ V +N + R E + L + E +H + ++ ++G+ + E F + + Sbjct: 78 SDVEVNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLD 136 Query: 152 VPSITAKANWALQY 165 ++ K ++ + Sbjct: 137 YQAMRDKHDYMQSF 150 >gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A] gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A] Length = 354 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 85/193 (44%), Gaps = 8/193 (4%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 +PI + ++++ + + ++ QL ++Y WA Y N W+P ++ + D Sbjct: 12 STNPIFNPDGDDAIENRAIWFGNTTNLMQLNDVRYSWAVGLYQQMRENFWIPQKLDITQD 71 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + + + LT+DER L + +S+ NI + ++ PE + Q +E Sbjct: 72 VTDY---SNLTEDERYAYDGILSYLTFLDSIQTCNIP-HLKNSITAPEVSLCMAEQISQE 127 Query: 125 AVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRR 181 +H+ ++QYII ++ +++ +RE + ++ + + Y + + P+ + Sbjct: 128 GMHNQSYQYIIETIVPPDRRNQVYEFWREDKVLRSRCEFIAKIYQKYIDDPTAENYFTAL 187 Query: 182 RSRILTRSLRFLC 194 + L L F Sbjct: 188 MADFLLEGLYFYN 200 >gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-A] Length = 313 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + +E Y A W EV + D ++ L +D+R I LGFF+ Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++S+V N++ + + + E + QA E VH+ + +I L D+ + N Sbjct: 63 AADSIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + VP + K +WAL++ + + +R + + + F Sbjct: 123 AFDNVPCVRKKDDWALKWIEN----DKATFAERLVAFAIVEGVFF 163 >gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] Length = 318 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ W+ Y A + HW E+ M D W +K L D ER +K L FFA Sbjct: 6 RKTLFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWNNK--LNDKERFFLKHVLAFFA 63 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++ +V NI+ + + E + +Q E VH+ + ++ D E + N Sbjct: 64 AADVIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRILN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + S+ KA WA ++ ++ ++ + +R + + + F Sbjct: 124 AIEHIDSVKRKATWAQKWIESQTA----TFAERMVAFAIVEGVFF 164 >gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp. K31] gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31] Length = 346 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA E + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 20 PFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDIE 77 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 VA+N + R E + L A E +H + ++ ++G+ E E F + + ++ Sbjct: 78 VADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQAM 136 Query: 156 TAKANWALQY 165 K ++ ++ Sbjct: 137 RDKHDFMQKF 146 >gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 318 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 LLP+ W+ Y A + HW E+ M D W K L D ER +K L FFA Sbjct: 6 RKTLLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNKK--LNDKERFFLKHVLAFFA 63 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++ +V NI+ + + E + +Q F E VH+ + ++ D E + N Sbjct: 64 AADVIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRILN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + S+ KA WA ++ + S+ + +R + + + F Sbjct: 124 AIEHIDSVKQKAAWAQKWIENQSA----TFAERMVAFAIVEGVFF 164 >gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris MCS10] gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10] Length = 345 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W +K L D ER ++ + FF S+ Sbjct: 20 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWATK--LNDGERNLLTQIFRFFTQSDVE 77 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L + E +H + ++ ++G+ + E F+ + E ++ Sbjct: 78 VNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQAM 136 Query: 156 TAKANWALQY 165 K ++ ++ Sbjct: 137 ADKHDYMQRF 146 >gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] Length = 364 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 23 RMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++ R + LLPL+YGWA+E Y + NHW P +V M D+ W+ + L++ +R + Sbjct: 30 RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ +G+F+++E +V +NI+ + ++ E + L R A EE +H+ + Y+I+SLG+D Sbjct: 90 VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSP 172 E M+ ++P+I AK + +Q L Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALRRD 180 >gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 10/174 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E E +F+ + P I A W Q+ P + +R + F Sbjct: 119 EKEQQRIFSGIEKHPIIRKMAQWVQQWM----DPVKNSLGERLVGFAAVEGILF 168 >gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] Length = 346 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 7/173 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + L L Y WA+ + N W P EV + +D ++ L E+ M + Sbjct: 24 GCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKA 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 L +S+ NN + ++ PE L+RQAFEEA+HS ++ ++ S+ L+ E+ Sbjct: 81 LSQLIFMDSIQTNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNTDEI 140 Query: 146 FNMYREVPSITAKANWA----LQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + M+R ++ K + ++ + + + F Sbjct: 141 YEMWRADENLRKKNEFIGNVYEEWGIKALNGDDEAKIYMIVANQALEGIYFYN 193 >gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] Length = 354 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +LN + ++ + +KY WA Y + NN W+P E+ + +D+ K + LT ER Sbjct: 28 EGILNGNTTNLREWNRIKYDWANVMYRTMLNNFWIPEEISLGEDI---KQFSYLTAGERK 84 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 85 AFDKIISFLNFLDSIQCENLP-NLARYITAAEVASLLNVQAFQEEIHAQSYSYILDTVTN 143 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE P + + + Y + PS + + + + + F Sbjct: 144 PVTRDKIYDEWREDPILLRRNKFIADMYQRFADDPSTENFVRSVMANYILEGIYFY 199 >gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] Length = 352 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 83/193 (43%), Gaps = 8/193 (4%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 ++PI ++++ + + ++ QL ++Y WA Y N W+P + + D Sbjct: 10 SINPIFNPGGDDAIENRSIWFGNTTNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 70 VTDYAN---LTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQE 125 Query: 125 AVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRR 181 +H+ ++QY+I ++ E +++ +R + + + + Y + + P+ + Sbjct: 126 GMHNQSYQYLIETIIPPERRTQVYEFWRTDTVLKDRCEFIAKLYQKYIDDPTSENYFIAL 185 Query: 182 RSRILTRSLRFLC 194 + L L F Sbjct: 186 MADFLLEGLYFYN 198 >gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae] Length = 345 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 17/187 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + + D+ +L S + P+KY W Y + W E+ + D ++ Sbjct: 14 ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK 73 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LTDD++ I L SS++LV ++ L NPE + + Q E +HS Sbjct: 74 ---LTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEV 130 Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 + ++ + D + F +P + KA + ++ S R Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISN------------DDSLYAER 178 Query: 189 SLRFLCR 195 + F + Sbjct: 179 LVAFAAK 185 >gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] Length = 342 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+ + ++ + +KY WA Y + NN W+P E+ + +D+ K LTD ER Sbjct: 16 QAMIGGNTTNLREWNRIKYDWANTLYRTMLNNFWIPEEISLNEDI---KQFPYLTDSERR 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +R ++ + + Y + P+ + + + + F Sbjct: 132 PITRDKIYDEWRTDSTLLERNRFIADAYQRFSDDPNEGNFLHTIVANYILEGIYFY 187 >gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] Length = 313 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 17/166 (10%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + +E Y A W EV + D ++ L +D+R I LGFF+ Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++S+V N++ + + + E + QA E VH+ + +I +L D+ + + N Sbjct: 63 AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K +WAL++ K ++ + R + F Sbjct: 123 AFDNISCVRKKDDWALKW------------TKNKKLTLAERLVAFA 156 >gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] Length = 365 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 7/163 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++T ++ A + ++ +L A P +Y WA++ +L+ HW+P EVP+ Sbjct: 28 DSTAMTDTAAPVAQPPMEQS-LLTANP---VYKPFRYPWAYDAWLTQQRVHWLPEEVPLA 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DD+ W LT+ ER ++ + FF S+ V N + + E L + Sbjct: 84 DDVKDWH--RTLTESERHLVTQIFRFFTQSDVEVNNCYMKHYSQVFKPTEVLMMLSAFSN 141 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 E +H + +++ ++G+ E E ++ + + + K ++ Q+ Sbjct: 142 IETIHIAAYSHLLDTIGMPETE-YSAFLKYKEMKDKYDYMQQF 183 >gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter diazotrophicus PAl 5] Length = 353 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N TG +P A + +L + P +Y WA++ +L+ HW+P EVP Sbjct: 4 ITNATGTAPESAPQPTGVEARLDLLTSNP---IYKPFRYPWAYDAWLTQQRVHWLPEEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD+ W LT+ E+ ++ + FF S+ V N + R E L Sbjct: 61 LADDVKDWH--RTLTESEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + E +H + +++ ++G+ E E ++ + + + K ++ + Sbjct: 119 SNIETIHIAAYSHLLDTIGMPEME-YSAFLKYKEMKDKYDYMQGF 162 >gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 352 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI E ++++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 11 INPIFNPEGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDV 70 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 71 TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEG 126 Query: 126 VHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +H+ ++QY+I ++ ++++ +R + + + + Y + + + + Sbjct: 127 MHNQSYQYLIETIIPPDRRTQVYDFWRTDKVLKDRCEFIAKLYQKYIDDATPENYFIALM 186 Query: 183 SRILTRSLRFLC 194 + L L F Sbjct: 187 ADFLLEGLYFYN 198 >gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] Length = 313 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 17/166 (10%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y A + W EV + D + K LTD+ER I++ L FFA Sbjct: 5 RKVLFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 +++S+V NI+ + R + E + + +Q + +H+ + +I +L DE + L N Sbjct: 63 AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + +P + KA WA++Y + + R + F Sbjct: 123 GFENMPCVRRKAEWAMKYID------------DEKITLAERLVAFA 156 >gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] Length = 342 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 85/176 (48%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++M+N + ++ + +KY WA Y + NN W+P E+ + +D+ K LTD ER Sbjct: 16 QQMINGNTTNLREWNRIKYDWAQTLYRTMLNNFWIPEEIALNEDV---KGFPFLTDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ + R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIIAFLNFLDSIQSENLP-HLSRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P+ + + + + + F Sbjct: 132 PVTRDKIYDQWREDEELLKRNRFIADIYERFNEEPNDKNFLRAIMANYILEGIYFY 187 >gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] Length = 355 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 84/198 (42%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 ++ +PI + ++++ M +++ QL ++Y WA Y N W+P + Sbjct: 8 LSQTMPKTPIFNPDGDDRIENRTMWFGNITNLMQLNDVRYNWAVGLYKQMRENFWIPERL 67 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ + LTD+ER L + +S+ NI + ++ PE + Sbjct: 68 DITQDVTDY---WNLTDEERYAFDGILSYLTFLDSIQTCNIP-HLKSSVTAPEISLCMAE 123 Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q +E +H+ +QY+I ++ ++++ +R + A+ + Y + + +PS Sbjct: 124 QISQEGMHNQAYQYMIETIIPLEKRNQVYDFWRTDKVLKARCEFIAGLYQKYIDTPSIEN 183 Query: 177 WNKRRRSRILTRSLRFLC 194 + + L L F Sbjct: 184 YFVALMADYLLEGLYFYN 201 >gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium bathyomarinum JL354] Length = 354 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HWMP EVP+ +D W K L++ ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQK--LSEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E +H + +++ ++G+ E E + M+ Sbjct: 65 QADVEVQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWALQY 165 E + K ++ Q+ Sbjct: 124 EYEEMKDKHDYLQQF 138 >gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] Length = 360 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 2/161 (1%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 +LPLKY WA++ Y + NNHW P ++PMQ D+ LW+S + L+D ER +IK +G+F++ Sbjct: 37 FNILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWIIKMAIGYFSA 95 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 +E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG++ E M+ + Sbjct: 96 AEGIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINPHECEAMFED 155 Query: 152 VPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + +I K + + ++ L + F Sbjct: 156 IDTIERKTAFVVNNSRGLRRDMDLTTTADK-QAFTKNMFLF 195 >gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] Length = 355 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI ++++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 14 INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 73 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 74 TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEG 129 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +H+ ++QYII ++ E ++++ +R + + + Y + + P+ + Sbjct: 130 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDHPTSENYFVALM 189 Query: 183 SRILTRSLRFLC 194 + L L F Sbjct: 190 ADYLLEGLYFYN 201 >gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] Length = 344 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI ++++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 3 INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 63 TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEG 118 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +H+ ++QYII ++ E ++++ +R + + + Y + + P+ + Sbjct: 119 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDIPTSENYFVALM 178 Query: 183 SRILTRSLRFLC 194 + L L F Sbjct: 179 ADYLLEGLYFYN 190 >gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] Length = 349 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 84/190 (44%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + ++M+N + ++N +KY W E Y +A NN W+P E+ + DL Sbjct: 6 KALFNENGDIELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L + E+ + L F +S+ N+ I +++ E L QA++EA+ Sbjct: 66 DYK---ILDEYEKTAFDKVLSFLIFLDSIQTANLP-YIGEYITANEINLCLTIQAYQEAI 121 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 HS ++ Y++ S+ E + +R+ + A+ + Y + + + K + Sbjct: 122 HSQSYGYMLDSICSPEERTNILYQWRDDEHLLARNKFIGDLYNEFQVNKDPYSLVKTMVA 181 Query: 184 RILTRSLRFL 193 + + F Sbjct: 182 NYILEGVYFY 191 >gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] Length = 342 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +R ++ + + Y + PS + + + F Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSDDPSEANLIHTIIANYILEGIYFY 187 >gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] Length = 342 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +R ++ + + Y + PS + + + F Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSDDPSEANLIHTIIANYILEGIYFY 187 >gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] Length = 342 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +R ++ + + Y + PS + + + F Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSDDPSEANLIHTIIANYILEGIYFY 187 >gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium aromaticivorans DSM 12444] gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium aromaticivorans DSM 12444] Length = 351 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 15/162 (9%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P +Y WA+E + HWMP EVP+ +D W K +++ ER ++ + FF Sbjct: 7 RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--ISEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V N R E + L + E VH + +++ ++G+ E E + M+ Sbjct: 65 QADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E + AK ++ + I F Sbjct: 124 EYEELKAKHDY------------LQTFGVETDEDIARTLAMF 153 >gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] Length = 342 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +R ++ + + Y + PS + + + F Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSDDPSEANLIHTIIANYILEGIYFY 187 >gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] Length = 342 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +R ++ + + Y + PS + + + F Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSDDPSEANLIHTIIANYILEGIYFY 187 >gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] Length = 342 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++ + ++ + +KY WA Y + NN W+P E+ +Q+D+ + LTD ER Sbjct: 18 LIKGNTTNLREWNRIKYDWARLIYRTMLNNFWIPEEISLQEDVKQF---PYLTDGERNAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENLP-NISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPV 133 Query: 142 -EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +++++RE + + + Y + PS + + + + + F Sbjct: 134 TRDRIYDIWREDKYLLERNKFIANIYQRFSDEPSDENFVRVVFANYILEGIYFY 187 >gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] Length = 359 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 85/192 (44%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI E +V+++ + +++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 18 INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT DER L + +S+ NI + ++ PE + Q +EA Sbjct: 78 VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNIP-HLKSSITAPEISLCMAEQVSQEA 133 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQT-LSSPSFHYWNKRRR 182 +H+ ++QY+I ++ + ++ +R + + + ++ Q + +P+ + Sbjct: 134 MHNQSYQYMIETIIPSDRRSFVYEFWRTDSVLHNRCEYIARFYQNYIDNPTSENYFVALL 193 Query: 183 SRILTRSLRFLC 194 + L L F Sbjct: 194 ADFLLEGLYFYN 205 >gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium acnes KPA171202] gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium acnes KPA171202] gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL074PA1] gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA2] gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA1] gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA1] gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA2] gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA1] gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA2] gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA1] gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL007PA1] gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL056PA1] gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL001PA1] gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA3] gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA2] gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA2] gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA1] gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL045PA1] gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA2] gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA3] gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA1] gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA2] gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA3] gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL078PA1] gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA2] gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA3] gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA1] gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA4] gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL060PA1] gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL038PA1] gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA2] gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA1] gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA3] gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA2] gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL097PA1] gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA2] gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA1] gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA2] gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL020PA1] gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL099PA1] Length = 328 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + + + + ++ + + + + + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAY 168 >gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL103PA1] Length = 328 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + + + + ++ + + + + + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAY 168 >gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 348 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 15/160 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA++ + HW+P EVP+ +D W +K LTD ER ++ + FF S Sbjct: 17 TYKPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWATK--LTDKERNLLTQIFRFFTQS 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E R L + E +H + ++ ++G+ + E F+ + E Sbjct: 75 DVEVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPDTE-FSAFMEY 133 Query: 153 PSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + AK ++ ++ ILT F Sbjct: 134 EEMAAKHDYLGKF------------GCETDRDILTSMAVF 161 >gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter litoralis HTCC2594] gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis HTCC2594] Length = 356 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 15/162 (9%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HWMP EVP+ +D W K +T+ ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQK--ITEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E ++ + Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E + K ++ + I F Sbjct: 124 EYEEMKDKHDY------------LQLFGVDTDEDIARTLAVF 153 >gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] Length = 355 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 85/198 (42%), Gaps = 8/198 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 ++ ++PI ++++ M +++ QL ++Y WA Y N W+P + Sbjct: 8 LSERMPITPIFNPNGDDRIENRTMWFGNITNLMQLNDVRYTWAVGLYKQMRENFWIPERL 67 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ + LT+DER + L + +S+ NI + ++ PE + Sbjct: 68 DITQDVTDY---WNLTEDERYAFEGILSYLTFLDSVQTCNIP-HLKASVTAPEISLCMAE 123 Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHY 176 Q +E +H+ +QY+I ++ E+++ +R + A+ + Y + ++ P+ Sbjct: 124 QISQEGMHNQAYQYMIETIIPLERRSEVYDFWRTDKVLKARCEFIAGLYQKYINQPNIDN 183 Query: 177 WNKRRRSRILTRSLRFLC 194 + + L L F Sbjct: 184 YFTALMADYLLEGLYFYN 201 >gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia profundicola AmH] gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia profundicola AmH] Length = 346 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 7/173 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + L L Y WA+ + N W P EV + +D ++ L E+ M + Sbjct: 24 GCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKA 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 L +S+ NN + ++ PE ++RQA+EEA+HS ++ ++ S+ L+ E+ Sbjct: 81 LSQLIFMDSIQTNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNTDEI 140 Query: 146 FNMYREVPSITAKANWA----LQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + M+R ++ K + ++ + + + F Sbjct: 141 YEMWRVDANLRKKNEFIGNVYEEWGTKALNGDDEAKIYMIVANQCLEGIYFYN 193 >gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] Length = 342 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + +++ + +KY WA E Y + NN W+P E+ + +D+ K + LTD ER + Sbjct: 21 GSTTNLREWNRIKYNWANELYRNMLNNFWIPEEISLNEDV---KQFSYLTDGERNAFDKI 77 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EG 143 + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 78 ISFLNFLDSIQSENLP-NISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTNPITRD 136 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE ++ + + Y + +P+ + + + + + F Sbjct: 137 KIYDQWREDKNLLERNKFIAGIYQRFNENPTTENFLRTIMANYILEGIYFY 187 >gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica ATCC 49814] gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814] Length = 345 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWAGK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + E R L + E VH + ++ ++G+ + E F+ + E + Sbjct: 79 VGANYMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLETIGMPDSE-FSAFMEYEEM 137 Query: 156 TAKANWALQYTQTLSSP 172 AK ++ +++ + Sbjct: 138 AAKHDYLGKFSVDTEAD 154 >gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA1] gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL092PA1] Length = 328 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + + + + ++ + + + + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAY 168 >gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA1] gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA2] gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA1] gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA2] gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL086PA1] gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA4] gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL067PA1] gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA1] gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA1] gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA1] gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA1] gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA2] gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA2] gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA1] gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA2] gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA3] gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA2] gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA1] gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA2] Length = 328 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + + + + ++ + + + + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAY 168 >gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a] Length = 342 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 18/167 (10%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +NQ ++ + Y W E+ + +D+A W + ++DE+ I L FFA Sbjct: 32 LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 S + +V N+ + + P+ R + Q E++H T+ +I + D + + Sbjct: 89 SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +E+P IT KA W + + + R + F C Sbjct: 149 SIQEMPIITKKAQWVTAWMD------------PEVASLAERLVAFTC 183 >gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 345 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P +Y WA+E + HWMP EVP+ +D W K L+D ER ++ + FF Sbjct: 16 NAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWAVK--LSDAERNLLTQIFRFFTQ 73 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ V N + E L + E +H + ++ ++G+ + E F+ + E Sbjct: 74 SDVEVGANYMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLLETIGMPDSE-FSAFME 132 Query: 152 VPSITAKANWALQY 165 + AK ++ Q+ Sbjct: 133 YKEMAAKHDYLGQF 146 >gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] Length = 342 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA E Y + NN W+P E+ + +D+ K LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYNWANELYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ PE L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTL-SSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE ++ + + Q+ +P+ + + + + + F Sbjct: 132 PITRDKIYDQWREDKNLLERNKFIAGIYQSFNENPTTENFLRTIMANYILEGIYFY 187 >gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 350 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 94/189 (49%), Gaps = 8/189 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I E + ++R++N +++ +L +KY WA++ Y + +N W+P E+P+ +D Sbjct: 14 IFNPEGERDAANRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQ 73 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+D ER + L F + +S + + R +S PE L Q F+E++H Sbjct: 74 YE--RVLSDYERRAYELVLSFLIALDSFQVDMLKD-FARMISAPEVEMALTAQEFQESIH 130 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 ++++Q+I+ S+ + E++N +RE + + + Y + + PS + K Sbjct: 131 AYSYQFILESVVDPIKADEIYNYWREDEKLKERNEVVAEVYNEFIRKPSEENFIKAVIGN 190 Query: 185 ILTRSLRFL 193 + SL F Sbjct: 191 YILESLYFY 199 >gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] Length = 347 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI + N +++ + + +V L +YGWA Y + + W+P + D Sbjct: 9 SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + L ER +K L + +S+ NI + R+++ PE R L Q +EA+ Sbjct: 69 DYAN---LIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124 Query: 127 HSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL-SSPSFHYWNKRRRS 183 H T+QYI S+ ++ E+++ +++ + + + Y Q L ++P+ + Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKQDLLLHERCEFIAGYYQNLANNPTGENYYMALIG 184 Query: 184 RILTRSLRFL 193 L L F Sbjct: 185 DYLLEGLLFY 194 >gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 342 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQTFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +R ++ A+ + Y + PS + + + F Sbjct: 134 TRDKIYDEWRTDKTLLARNRFIADAYQRFSDDPSEANLIHTIIANYILEGIYFY 187 >gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] Length = 352 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 82/191 (42%), Gaps = 8/191 (4%) Query: 8 SPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +PI + ++ + + +++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 12 NPIFNPDGNDDIAHRSIWFGETTNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVT 71 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + LTD ER L + +S+ N+ I ++ PE + Q +E + Sbjct: 72 DYHN---LTDSERRAFDGILSYLTFLDSVQTCNLP-HIKSSITAPEISLCIAEQISQEGM 127 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRRS 183 H+ ++QY+I ++ +++ +R + + + A Y + + +P+ + + Sbjct: 128 HNQSYQYMIETIIPSDRRSAVYDFWRTDKVLRDRCEYIASNYQRYIDNPTPENYFTTLVA 187 Query: 184 RILTRSLRFLC 194 L L F Sbjct: 188 DYLLEGLYFYN 198 >gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] Length = 351 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 Q P +Y WA+E + HW+P EVP+ +D W K LTD ER ++ + FF + Sbjct: 9 QYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E + + E Sbjct: 67 DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLEY 125 Query: 153 PSITAKANWALQY 165 + K ++ ++ Sbjct: 126 AEMKDKHDYLQKF 138 >gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] Length = 342 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P H + + + + + F Sbjct: 132 PITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIYFY 187 >gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] Length = 350 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125 Query: 153 PSITAKANWALQY 165 + K ++ Q+ Sbjct: 126 KEMKDKHDYLQQF 138 >gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] Length = 342 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P + + + + + + F Sbjct: 132 PITRDKIYDQWREDEQLLERNKFIAGIYEKFNKEPEIYNFLRVIMANYILEGIYFY 187 >gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] Length = 351 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA+E + HWMP EVP+ +D W K ++D ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E +H + +++ ++G+ E E + M+ Sbjct: 65 QADVEVQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWA 162 E + AK ++ Sbjct: 124 EYEEMKAKHDYM 135 >gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 334 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S Sbjct: 24 VYKPFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWH--RSLTESERHLVTQIFRFFTQS 81 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + + E L + E +H + +++ ++G+ E E ++ + + Sbjct: 82 DVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPESE-YSAFLKY 140 Query: 153 PSITAKANWALQY 165 + K ++ ++ Sbjct: 141 KEMKDKYDYMQEF 153 >gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ K LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P H + + + + + F Sbjct: 132 PITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIYFY 187 >gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] Length = 351 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125 Query: 153 PSITAKANWALQY 165 + K ++ Q+ Sbjct: 126 KEMKDKHDYLQQF 138 >gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1] gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1] Length = 419 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 25/204 (12%) Query: 1 MANNTGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLK----YGWAWEKYLSACNNH 53 + T P + +K ++ V+ + D L K Y ++ Y Sbjct: 72 LKRTTIHLPTEFRKKEMDGEIVEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALF 131 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+ + D W+ + DE+ +K L FFAS + +V NI L + P+ Sbjct: 132 WVVEEIDLSGDSKDWEDA---SSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQI 188 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 RQ+ Q EAVH ++ +I + D E + + +P I KA WA ++ + Sbjct: 189 RQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPET 248 Query: 171 SPSFHYWNKRRRSRILTRSLRFLC 194 + + R + F C Sbjct: 249 ------------ASLAERLVGFTC 260 >gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA1] gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA3] Length = 328 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ K + + + + ++ + + + + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAY 168 >gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] Length = 346 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P +Y WA+E + HWMP EVP+ +D W LT+ ER ++ + FF Sbjct: 7 RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--NLTEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E ++ + Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123 Query: 151 EVPSITAKANWALQY 165 + + K N+ Q+ Sbjct: 124 DYEEMADKHNYMHQF 138 >gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium botulinum Ba4 str. 657] gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 342 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P H + + + + + F Sbjct: 132 PITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIYFY 187 >gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] Length = 342 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P H + + + + + F Sbjct: 132 PITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIYFY 187 >gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] Length = 351 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQY 125 Query: 153 PSITAKANWALQY 165 + K ++ Q+ Sbjct: 126 KEMKDKHDYLAQF 138 >gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit [Clostridium botulinum H04402 065] Length = 342 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P H + + + + + F Sbjct: 132 PITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIYFY 187 >gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum centenum SW] gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum centenum SW] Length = 322 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 7/151 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L P +Y WA+E +L+ HW+P EVP+ DD+ W+ K LT+ ER + Sbjct: 3 SPLLTPNP---VYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQK--LTEAERNL 57 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + + FF ++ V N + R E L + E VH + +++ ++G+ Sbjct: 58 LTQIFRFFTQADVEVNNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMP 117 Query: 142 EGELFNMYREVPSITAKANWALQY-TQTLSS 171 E E ++ + + K ++ + +L Sbjct: 118 EIE-YSAFLRYKEMKDKYDYMQGFNVDSLED 147 >gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 3502] gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium botulinum A str. ATCC 3502] gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] Length = 342 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++++ +RE + + + Y + P H + + + + + F Sbjct: 132 PITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIYFY 187 >gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c] gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2; AltName: Full=Ribonucleotide reductase R2 subunit 2; AltName: Full=Ribonucleotide reductase small subunit 2 gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae] gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae] gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c] gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB] gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO] Length = 345 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 17/187 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + + D+ +L S + P+KY W Y + W E+ + D ++ Sbjct: 14 ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK 73 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LTDD++ I L SS++LV ++ L NPE + + Q E ++S Sbjct: 74 ---LTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEV 130 Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 + ++ + D + F +P + KA + ++ S R Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISN------------DDSLYAER 178 Query: 189 SLRFLCR 195 + F + Sbjct: 179 LVAFAAK 185 >gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] Length = 340 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV DD+ + Sbjct: 6 IYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--NLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + + K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGIYFY 189 >gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum rubrum ATCC 11170] gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] Length = 358 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ +DL W S + ++D ER ++ + FF S+ V+ Sbjct: 30 RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWAS-DRVSDQERNLLTQIFRFFTQSDVEVS 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +N + E + + E +H + ++T+LG+ E F+ +R+ ++ Sbjct: 89 DNYLKRYMPIFQPLEIQMMMAAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAMRD 147 Query: 158 KANWALQY 165 KA++ + Sbjct: 148 KADYMHTF 155 >gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus] Length = 419 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 22/183 (12%) Query: 19 VDDKRMLNARSDVNQLLPLK----YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 V+ + D L K Y ++ Y W+ E+ M D W Sbjct: 93 VEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDMSGDSKDWDDA--- 149 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + DE+ +K L FFAS + +V NI L + P+ RQ+ Q EAVH ++ + Sbjct: 150 SSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLL 209 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 I + D E + + +P I KA WA ++ + + + R + Sbjct: 210 IQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPET------------ASLAERLVG 257 Query: 192 FLC 194 F C Sbjct: 258 FTC 260 >gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] Length = 352 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA+E + HWMP EVP+ +D W K LT+ ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--LTEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E ++ + Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123 Query: 151 EVPSITAKANWALQY 165 + + K N+ Q+ Sbjct: 124 DYEEMADKHNYMQQF 138 >gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] Length = 340 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV D+ + Sbjct: 6 IYNPGSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--SLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + + K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGIYFY 189 >gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] Length = 257 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 9/139 (6%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N++ PL W+ Y N W+ E+ DD W+ K LT+DER L FF + Sbjct: 80 NEISPL---DIWKMYKKTLANQWVVEEIESSDDGLDWEKK--LTNDERDFFSNVLAFFVA 134 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNM 148 S ++ N+ + PE + + Q + +HS T+ +I + D + +LFN Sbjct: 135 SCGIINKNL-NRFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKLFNA 193 Query: 149 YREVPSITAKANWALQYTQ 167 +P + KA WAL++ Sbjct: 194 IETIPCVKKKAEWALKWIN 212 >gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] Length = 342 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 22/178 (12%) Query: 24 MLNARSDVNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ D L +Y + Y W E+ + +D+ W + DE+ Sbjct: 21 HEDSEFDRFILFNQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECWDKS---SSDEQ 77 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFAS + +V N+ + + P+ R + Q E++H + +I + Sbjct: 78 HFIIHILAFFASLDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILIQTYV 137 Query: 140 LD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + + ++ +E+P I KA W + + + R + F C Sbjct: 138 KNSQQQSKILRSVQEMPIIRKKAQWVTSWMDPETC------------SLAERLVAFTC 183 >gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803] gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803] Length = 355 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI +V+++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 14 VTPIFNPTGNDSVENRTIWFGNTTNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDV 73 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT++ER L + +S+ NI + ++ PE + Q +E Sbjct: 74 TDY---WNLTNEERYAFDGILSYLTFLDSVQTCNIP-HLKSSVTAPEISLCMAEQISQEG 129 Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRR 182 +H+ ++QY+I ++ +++ +R + + + A+ Y + + P+ + Sbjct: 130 MHNQSYQYMIETIIPTEKRDKVYEFWRTDRVLKERCEYIAMLYQKYVDHPTQENYFIALM 189 Query: 183 SRILTRSLRFLC 194 + L L F Sbjct: 190 ADYLLEGLYFYN 201 >gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis alaskensis RB2256] gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis RB2256] Length = 354 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HW+P EVP+ +D W K ++D ER ++ + FF Sbjct: 7 RKTYKPFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E + M+ Sbjct: 65 QADIEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWALQY 165 E + AK ++ Q+ Sbjct: 124 EYDEMRAKHDYMQQF 138 >gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter curvus 525.92] gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter curvus 525.92] Length = 340 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV DD+ + Sbjct: 6 IYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LTD E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + + K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGIYFY 189 >gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Boryong] gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Boryong] Length = 329 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E + L + E +H + +++ ++G+ E E + + + ++ Sbjct: 70 VNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYKAM 128 Query: 156 TAKANWALQY 165 K ++ ++ Sbjct: 129 KDKYDYMQRF 138 >gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Ikeda] gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Ikeda] Length = 359 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 27 PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLTQIFRFFTQADIE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E + L + E +H + +++ ++G+ E E + + + ++ Sbjct: 85 VNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYKAM 143 Query: 156 TAKANWALQY 165 K ++ ++ Sbjct: 144 KDKYDYMQRF 153 >gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas wittichii RW1] gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1] Length = 350 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W K LTD ER ++ + FF + Sbjct: 9 TYKPFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125 Query: 153 PSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + K ++ + I F Sbjct: 126 KEMKDKHDY------------LSTFGVDTDEDIARTLAMF 153 >gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] Length = 332 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF Sbjct: 15 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFT 72 Query: 91 SSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ V NN + Y ++ P E L + E VH + Y++ ++G+ E E + + Sbjct: 73 QADIEV-NNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAF 130 Query: 150 REVPSITAKANWALQYTQTLSSPSFH 175 + + K ++ ++ ++ H Sbjct: 131 LKFEVMKKKYDYMQRFEESRKGDKRH 156 >gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789] gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291] gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118] gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796] gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23] Length = 345 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 17/187 (9%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + + D+ +L S + P+KY W Y + W E+ + D ++ Sbjct: 14 ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK 73 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LTDD++ I L SS++LV ++ L NPE + + Q E ++S Sbjct: 74 ---LTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEV 130 Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 + ++ + D + F +P + K + ++ S R Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWISN------------DDSLYAER 178 Query: 189 SLRFLCR 195 + F + Sbjct: 179 LVAFAAK 185 >gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13] Length = 328 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 17/177 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L S + P+KY W Y + W E+ + D ++ LTDD++ Sbjct: 7 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKT 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L SS++LV ++ L NPE + + Q E ++S + ++ + Sbjct: 64 YIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFK 123 Query: 141 DEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLCR 195 D + F +P + K + ++ S R + F + Sbjct: 124 DPKNIPLFKEIANLPEVKHKTAFIERWISN------------DDSLYAERLVAFAAK 168 >gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] Length = 340 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I +++D+++ + KY WA + + N W P EV D+ Sbjct: 3 RKKIYNPNSDESLNDRKVFGGNPHGILNFTKAKYTWALKLWDMMEGNTWFPKEVDTTKDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LTD E+ M S +S NN+ I +++ PE L RQA+EEA Sbjct: 63 IDYNK--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLSRQAYEEA 120 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 HS ++ ++ ++ + ++ M + + K ++ Y + + + Sbjct: 121 NHSKSYAVMVEAMCDNTDLIYEMEKHDEVLRRKNDYISSVYEELAGDVTEEKLVLAMFAN 180 Query: 185 ILTRSLRFL 193 + + F Sbjct: 181 QILEGIYFY 189 >gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter concisus 13826] gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter concisus 13826] Length = 340 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV DD+ + Sbjct: 6 IYNPSSNENLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT+ E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--NLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + + K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEELAGEVTDEKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGIYFY 189 >gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] Length = 343 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF Sbjct: 26 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFT 83 Query: 91 SSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ V NN + Y ++ P E L + E VH + Y++ ++G+ E E + + Sbjct: 84 QADIEV-NNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAF 141 Query: 150 REVPSITAKANWALQYTQTLSSPSFH 175 + + K ++ ++ ++ H Sbjct: 142 LKFEVMKKKYDYMQRFEESRKGDKRH 167 >gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 329 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSNVEKNLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 70 V-NNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFH 175 + K + L++ ++ H Sbjct: 128 MRKKYEYMLEFEESKKQDKKH 148 >gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] Length = 339 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S +G++ +L A P +Y WA++ +L+ HW+P EVP+ DD+ Sbjct: 1 MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W L + E+ ++ + FF S+ V N + R E L + E + Sbjct: 58 DWH--RVLNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 H + Y++ +LG+ E E ++ + + + K + Y QT + S H Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYD----YMQTFTVDSKHE 160 >gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 339 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S +G++ +L A P +Y WA++ +L+ HW+P EVP+ DD+ Sbjct: 1 MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W L + E+ ++ + FF S+ V N + R E L + E + Sbjct: 58 DWH--RVLNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 H + Y++ +LG+ E E ++ + + + K + Y QT + S H Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYD----YMQTFTVDSKHE 160 >gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. St. Maries] gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Mississippi] gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Puerto Rico] gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Virginia] gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale str. St. Maries] Length = 324 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF Sbjct: 7 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ V NN + Y ++ P E L + E VH + Y++ ++G+ E E + + Sbjct: 65 QADIEV-NNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAF 122 Query: 150 REVPSITAKANWALQYTQTLSSPSFH 175 + + K ++ ++ ++ H Sbjct: 123 LKFEVMKKKYDYMQRFEESRKGDKRH 148 >gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum lavamentivorans DS-1] gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 + + P +Y WA+E +L+ HW+P EVP+ DD+ W K LT+ ER ++ + F Sbjct: 5 EERHVYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSKK--LTEGERNLLTQIFRF 62 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F ++ V N + R E + L + E VH + +++ ++G+ E E + Sbjct: 63 FVQADVEVNNCYMKHYSRVFKPTEVQMMLAAFSNIETVHISAYSHLLDTIGMPEAE-YEA 121 Query: 149 YREVPSITAKANWALQY 165 + + + K ++ ++ Sbjct: 122 FLKYEQMKTKFDYMQEW 138 >gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] Length = 343 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 72/175 (41%), Gaps = 8/175 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +L A P +Y WA++ +++ HW+P EVPM DD+ W+ LT+ E Sbjct: 7 PEKMDLLTANP---VYKPFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQK--NLTESE 61 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R ++ + FF ++ V N + + E L + E +H + +++ ++ Sbjct: 62 RNLLTQIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTI 121 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 G+ E E + + + + K ++ + ++ + + F Sbjct: 122 GMPETE-YQAFLKYKEMKDKYDYMQSF--SVENKTEIAKTLAAFGAFTEGLQLFA 173 >gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 355 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 +SPI ++++ + + ++ QL ++Y W+ Y N W+P + + D+ Sbjct: 14 ISPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDV 73 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LTD+ER L + +S+ NI + ++ PE + Q +EA Sbjct: 74 TEY---GHLTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEA 129 Query: 126 VHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 +H+ ++QY+I ++ GE+++ +R + + + Y Q + + + Sbjct: 130 MHNQSYQYLIETIIPSDRRGEVYDFWRTDKVLKDRCEFIASLYQQYIDKQTTESYFIALL 189 Query: 183 SRILTRSLRFLC 194 + L SL F Sbjct: 190 ADYLLESLYFYN 201 >gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] Length = 341 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 16/177 (9%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +LP++ W +A + W E + D W+ K L ER +K L FFA Sbjct: 8 RKVILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWRHK--LCVQERFFLKHILAFFA 65 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 S++++V N++ + + E R + +Q E VHS + ++ + E L N Sbjct: 66 SADTIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNSEERNKLLN 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSF-----------HYWNKRRRSRILTRSLRFL 193 + + I KA WAL++T++ + + NK S++ R + F Sbjct: 126 AFDRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFA 182 >gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp. ATCC 51142] gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 347 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI + N + + + + +V L +YGWA Y + +W+P + D Sbjct: 9 SPIFNPTGKDNKEKRHLWGGDTTNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKL 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + L ER +K L + +S+ NI + R+++ PE R L Q +EA+ Sbjct: 69 DYVN---LIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124 Query: 127 HSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSS-PSFHYWNKRRRS 183 H T+QYI S+ ++ E+++ +++ + + + Y QTL+ P + Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKKDLLLNERCEFIASYYQTLADNPCGETYFMALIG 184 Query: 184 RILTRSLRFL 193 L L F Sbjct: 185 DYLLEGLLFY 194 >gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 329 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 70 V-NNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFH 175 + K + L++ ++ H Sbjct: 128 MRKKYEYMLEFEESKKHDKKH 148 >gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] Length = 329 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 70 V-NNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFH 175 + K + L++ ++ H Sbjct: 128 MRKKYEYMLEFEESKKHDKKH 148 >gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6] Length = 342 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 91/189 (48%), Gaps = 8/189 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I + ++++ +++ +L +KY WA++ Y + N W+P E+PM +D Sbjct: 6 IFNPQGDRETSKRKVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQ 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F + +S N++ R+++ PE L Q F+EA+H Sbjct: 66 YEK--DLSPYEKRAYEMVLSFLIALDSYQV-NMLKEFARYITAPELVMALTSQEFQEALH 122 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S+++Q+I+ S+ + E++N +R+ + + Q Y + + P+ + K Sbjct: 123 SYSYQFILESVVEPQVADEIYNYWRQDTVLMERNQVIAQLYNEFIRHPTEENFIKATFGN 182 Query: 185 ILTRSLRFL 193 + SL F Sbjct: 183 YVLESLYFY 191 >gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] Length = 338 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++ + FF + Sbjct: 28 VYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLTQIFRFFTQA 85 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + + E L + E +H + +++ ++G+ E E ++ + + Sbjct: 86 DVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKY 144 Query: 153 PSITAKANWALQY 165 + K ++ ++ Sbjct: 145 KEMKDKYDYMQEF 157 >gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] Length = 324 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E +H + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYMQQF 138 >gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium cryptum JF-5] gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5] Length = 338 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++ + FF + Sbjct: 28 VYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLTQIFRFFTQA 85 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + + E L + E +H + +++ ++G+ E E ++ + + Sbjct: 86 DVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKY 144 Query: 153 PSITAKANWALQY 165 + K ++ ++ Sbjct: 145 KEMKDKYDYMQEF 157 >gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit; Contains: RecName: Full=Aae nrdB intein; AltName: Full=Aae RIR2 intein gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] Length = 696 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I + ++++ +++ +L +KY WA++ Y N W+P E+ M +D Sbjct: 14 IFNPQGDREASKRKIIKGNPTNIFELNEIKYSWAFDLYKLMGFTNFWIPEEIQMLEDRKQ 73 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +++ L+D E+ + L F + +S + + R ++ PE + Q F+E+VH Sbjct: 74 YET--VLSDYEKRAYELVLSFLIALDSFQVDMLKE-FGRMITAPEVEMAITAQEFQESVH 130 Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 ++++Q+I+ S+ E++N +RE + + + Y + + P+ + K Sbjct: 131 AYSYQFILESVVDPVKADEIYNYWREDERLLERNKVIAELYNEFIRKPNEENFIKATIGN 190 Query: 185 ILTRSLRFL 193 + SL F Sbjct: 191 YILESLYFY 199 >gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 329 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 70 V-NNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFH 175 + K + L++ ++ H Sbjct: 128 MRKKYEYMLEFEESKKHDKKH 148 >gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter bethesdensis CGDNIH1] gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter bethesdensis CGDNIH1] Length = 339 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 7/165 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M + T E+ V V +L P +Y WA+E +L HW+P EVP Sbjct: 1 MTDETIQGAAPQAEQDVPVRFD-LLTENP---VYKPFRYPWAYEAWLVQQQVHWLPEEVP 56 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD+ W L + E+ ++ + FF S+ V N + R E L Sbjct: 57 LADDVKDWH--RNLNEVEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 114 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + E +H + +++ ++G+ E E ++ + + + K ++ + Sbjct: 115 SNIETIHIAAYSHLLDTIGMPEVE-YSAFLKYKEMKDKYDYMHSF 158 >gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter oxydans 621H] gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter oxydans 621H] Length = 339 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S Sbjct: 24 VYKPFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWH--RTLTEAERHLVTQIFRFFTQS 81 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E L + E +H + +++ ++G+ E E ++ + + Sbjct: 82 DVEVNSAYMKYYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKY 140 Query: 153 PSITAKANWALQY 165 + K ++ + Sbjct: 141 KEMKDKYDFMQSF 153 >gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia massiliae MTU5] gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia massiliae MTU5] Length = 336 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 13 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 70 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 71 VNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 129 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 130 KDKYDYMQQF 139 >gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 327 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYMQQF 138 >gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3] gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3] Length = 346 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ K LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E+F+ +R P++ + ++ Y P+ + ++ L F Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTNGYKAFAEEPNVENLLRSIVFDVILEGLFFY 191 >gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti] gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti] Length = 244 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DLA W+ L E+ I L FF +S+ + N+V + L E R + Sbjct: 142 EVDLSKDLADWEK---LKSGEKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCFY 198 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 Q E VHS + +I + D + LFN +P + KA Sbjct: 199 GFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKAE 244 >gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia conorii str. Malish 7] gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. Iowa] gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia africae ESF-5] gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii str. Malish 7] gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia rickettsii str. Iowa] gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae ESF-5] gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] Length = 328 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYMQQF 138 >gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii RML369-C] gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii RML369-C] Length = 324 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYMQQF 138 >gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] Length = 324 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYMQQF 138 >gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] Length = 346 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 8/174 (4%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ K LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E+F+ +R P++ + ++ Y P+ + + ++ L F Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTNGYKAFAEEPNVEHLLRSIVFDVILEGLFFY 191 >gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str. 'Sheila Smith'] Length = 336 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 7/136 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLGFF 89 P Y WA+E + + HW+P EVP+ DD+ WK K+ LT E+ ++ + FF Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFRFF 71 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ V N + R E L + E VH + +++ ++G+ E E ++ + Sbjct: 72 TQADIEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAF 130 Query: 150 REVPSITAKANWALQY 165 + + K ++ Q+ Sbjct: 131 LKYKEMKDKYDYMQQF 146 >gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] Length = 184 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ + ++ +L L P++Y W+ Y A + W E+ + DL W Sbjct: 76 FVGDIELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 134 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 N + D+ER I L FFA+S+ +V N+V + E R + Q Sbjct: 135 -NRMNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQI 184 >gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] Length = 327 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYIQQF 138 >gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ZM4] gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 345 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125 Query: 153 PSITAKANWALQY 165 + K ++ + Sbjct: 126 KEMKDKHDYLATF 138 >gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus kaustophilus HTA426] Length = 346 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ K LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDV---KQFPQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E+F+ +R P++ + ++ Y P+ + ++ L F Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTNGYKAFAEEPNVENLLRSIVFDVILEGLFFY 191 >gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. fetus 82-40] gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter fetus subsp. fetus 82-40] Length = 340 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I ++D+++ + KY WA + + N W P EV DD+ Sbjct: 3 RKKIYNPSSNETLNDRKVFGGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTDDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT E+ M S +S NN+ I +++ PE L RQA+EEA Sbjct: 63 RDYA--CNLTTAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEA 120 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 HS ++ ++ ++ + ++ M + + K ++ Y + + + Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAGEVTDEKLLLAMVAN 180 Query: 185 ILTRSLRFL 193 + + F Sbjct: 181 QILEGVYFY 189 >gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 331 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK K L + E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKIK--LLNVEKNLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 70 V-NNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFH 175 + K + L++ ++ H Sbjct: 128 MRKKYEYMLEFEESKKHDKKH 148 >gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] Length = 344 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y WA+E ++ + HW+ TEVPM +D+ ++ K LTD ER + + L FF Sbjct: 30 RDYYKPFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQK--LTDSERDFLTKILRFFT 87 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + V+ V + PE R L A EAVH + ++I +LGL E ++N + Sbjct: 88 QGDIDVSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPES-IYNEFL 146 Query: 151 EVPSITAKANW 161 + ++ AK ++ Sbjct: 147 QYEAMAAKHDF 157 >gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis URRWXCal2] gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis URRWXCal2] Length = 327 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK L E+ ++ + FF ++ Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLAPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYMQQF 138 >gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] Length = 340 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + ++D+++ N + KY WA + + N W P EV D + Sbjct: 6 IYNPKSNETLNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTVAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICENTDLIYEMEKHDETLREKNDFISSIYEELAGEVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia prowazekii str. Madrid E] gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi str. Wilmington] gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia prowazekii] gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington] gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia prowazekii Rp22] Length = 324 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ D+ WK LT E+ ++ + FF ++ Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWKY--NLTPGEKHLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + R E L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VNNCYMKHYSRVFKPTEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKEM 128 Query: 156 TAKANWALQY 165 K ++ Q+ Sbjct: 129 KDKYDYMQQF 138 >gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 335 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P EVP+ DD+ W+ L+ E+ ++ + FF + Sbjct: 25 VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLTQIFRFFTQA 82 Query: 93 ESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V NN L Y + P E + A E VH + +++ ++G+ E E ++ + + Sbjct: 83 DVEV-NNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPESE-YSAFMK 140 Query: 152 VPSITAKANWALQY 165 + K ++ + Sbjct: 141 YKEMKDKYDYMQDF 154 >gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7c] Length = 277 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 3/163 (1%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D QL P++Y WA+ Y A N W P EV + DLA +K LT+DE+ +K + + Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKK---LTEDEKNALKTVISYL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +E L+ ++ IY ++ EC YL +Q +EEA H TF+YII + + E++ Sbjct: 73 NPNELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAG 132 Query: 150 REVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ KA + +Y + + + + + Sbjct: 133 WGKKSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAY 175 >gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 342 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P EVP+ DD+ W+ LT E+ ++ + FF + Sbjct: 32 VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQA 89 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E + A E VH + +++ ++G+ E E ++ + + Sbjct: 90 DVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKY 148 Query: 153 PSITAKANWALQYTQTLSSP 172 + K ++ + + Sbjct: 149 KEMKDKYDYMQNFDMSSKKD 168 >gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Pelagibacter ubique HTCC1062] gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus Pelagibacter ubique HTCC1062] Length = 337 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P EVP+ DD+ W+ LT E+ ++ + FF + Sbjct: 27 VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQA 84 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E + A E VH + +++ ++G+ E E ++ + + Sbjct: 85 DVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKY 143 Query: 153 PSITAKANWALQYTQTLSSP 172 + K ++ + + Sbjct: 144 KEMKDKYDYMQNFDMSSKKD 163 >gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] Length = 340 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I + D+++ + KY WA + + N W P EV DD+ Sbjct: 3 RKKIYNPFSDETLTDRKVFGGNPQGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT E+ M S +S NN+ I +++ PE L RQA+EEA Sbjct: 63 RDYN--FNLTSAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 HS ++ ++ ++ + ++ M + + K ++ Y + S + Sbjct: 121 NHSKSYAVMVEAICENTDLIYEMEKHDDMLRRKNDYISSVYEELAGEVSDDKLLLAMVAN 180 Query: 185 ILTRSLRFL 193 + + F Sbjct: 181 QILEGIYFY 189 >gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus thermodenitrificans NG80-2] gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus thermodenitrificans NG80-2] gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] Length = 344 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+N R S+V + Y WA+ KY N W P E+ M D+ K LT E+ Sbjct: 20 MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDV---KQFPQLTAREQDAF 76 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 77 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E+F+ +R P++ + ++ Y P+ + ++ L F Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFVTNGYKAFAEKPNVENLLRSIVFDVILEGLFFY 189 >gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 277 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 19/137 (13%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D + + LT +E+ IK L FFA+S+ +V N+V + E + + Q Sbjct: 1 MTFDCEHF---STLTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQ 57 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS + +I +L D+ E LFN +PSI KA WA ++ + Sbjct: 58 IAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIAS--------- 108 Query: 178 NKRRRSRILTRSLRFLC 194 + TR + F C Sbjct: 109 ----DTSFDTRCVAFAC 121 >gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 288 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H + Sbjct: 1 MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLT 60 Query: 134 IITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 ++ + D + F +PSI KA + L++ ++ + + R R L + Sbjct: 61 LLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLI 119 Query: 191 RFL 193 F Sbjct: 120 CFA 122 >gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] Length = 346 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++N +S +V + Y WA+ KY N W P E+ M D+ K LT+ E+ Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPNLTEREQDA 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL- 140 + +G A +S+ + + ++++ ++ A +E +H+H++ Y+++SL Sbjct: 78 FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVPK 136 Query: 141 -DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E+F +R P + + ++ Y +P+ K ++ L F Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFVTNGYKAFAENPNVENLLKSIVYDVILEGLFFY 191 >gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis str. Jake] gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake] Length = 324 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSEKEKNLLVQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + Sbjct: 70 V-NNCYMRHYSNIFKPTEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 127 Query: 155 ITAKANWALQYTQTLSSPSFH 175 + K ++ ++ + + H Sbjct: 128 MKKKYDYMQKFEECRKNDKRH 148 >gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Gardel] gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Gardel] Length = 329 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSDKEKNLLVQIFRFFTQADIE 74 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 75 VNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVM 133 Query: 156 TAKANWALQYTQTLSSPSFH 175 K ++ ++ + + H Sbjct: 134 KKKYDYMQRFEECRKNDKRH 153 >gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] Length = 346 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++N +S +V + Y WA+ KY N W P E+ M D+ K LT+ E+ Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPLLTEREQDA 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL- 140 + +G A +S+ + + ++++ ++ A +E +H+H++ Y+++SL Sbjct: 78 FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVTK 136 Query: 141 -DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E+F +R P + + ++ Y +P+ K ++ L F Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFVTNGYKAFAENPNVENLLKSIVYDVILEGLFFY 191 >gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia ruminantium] gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 324 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSDKEKNLLVQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 70 VNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVM 128 Query: 156 TAKANWALQYTQTLSSPSFH 175 K ++ ++ + + H Sbjct: 129 KKKYDYMQRFEECRKNDKRH 148 >gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 329 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSDKEKNLLVQIFRFFTQADIE 74 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 75 VNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVM 133 Query: 156 TAKANWALQYTQTLSSPSFH 175 K ++ ++ + + H Sbjct: 134 KKKYDYMQRFEECRKNDKRH 153 >gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia chaffeensis str. Arkansas] gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 324 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSEKEKNLLVQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 70 VNNCYMKHYSNIFKPTEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVM 128 Query: 156 TAKANWALQYTQTLSSPSFH 175 K ++ ++ + + H Sbjct: 129 KKKYDYMQRFEECRKNDKRH 148 >gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 305] Length = 305 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] Length = 342 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P E+P+ +D+ W+ LT E+ ++ + FF + Sbjct: 29 VYKPFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEKNLLTQIFRFFTQA 86 Query: 93 ESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V NN L Y + P E + A E +H + +++ ++G+ E E ++ + + Sbjct: 87 DVEV-NNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIGMPESE-YSAFLK 144 Query: 152 VPSITAKANWALQY 165 + K ++ + Sbjct: 145 YKEMKDKYDYMQNF 158 >gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] Length = 340 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 73/186 (39%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I ++ D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPNSNESLSDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CHLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVETICDNTDLIYEMEKHDATLREKNDFISGIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. doylei 269.97] gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 340 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 4/190 (2%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 I + D+++ + + KY WA + + N W P EV D Sbjct: 2 QRKKIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKD 61 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 ++ LT E+ M S +S NN+ I +++ PE L RQA+EE Sbjct: 62 ALDYR--CNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEE 119 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 A HS ++ ++ ++ + ++ M + ++ K ++ Y + + + Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAGDVDDNKLLLAMVA 179 Query: 184 RILTRSLRFL 193 + + F Sbjct: 180 NQILEGVYFY 189 >gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] Length = 351 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 5/154 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY ++ Y W E+ D+ W + +T DE+ Sbjct: 25 DESILTENKRRFVLFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNWND-DKITKDEKE 83 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 R L FAS++ N+ + PE + + Q + +H + +I SL Sbjct: 84 YFIRLLALFASNDMD-RENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVK 142 Query: 141 DEGELFNMYREVP---SITAKANWALQYTQTLSS 171 D+ + +M+ E+ +I K +A + + + Sbjct: 143 DDEKRTSMFEEIKDLTNIKEKIEYAKSWFENEDN 176 >gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81116] gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81-176] gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81116] gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni IA3902] gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni M1] gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 327] Length = 340 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii] Length = 360 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 2/128 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ DL W S + +TD ER ++ + FF S+ V Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWAS-DRVTDSERALLTQIFRFFTQSDIEVG 94 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +N + + + E VH + ++ +LG+ + E F +R + A Sbjct: 95 DNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEMRA 153 Query: 158 KANWALQY 165 KA++ ++ Sbjct: 154 KADYMHEF 161 >gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma phagocytophilum HZ] gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma phagocytophilum HZ] Length = 323 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF + Sbjct: 9 VYKPFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + Sbjct: 67 DIEV-NNCYMKHYSNIFRPTEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLK 124 Query: 152 VPSITAKANWALQYTQ 167 + K ++ ++ + Sbjct: 125 FEVMKKKYDYMQRFEE 140 >gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] Length = 340 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 73/186 (39%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S +NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTAGEKRMYDLVWSQLISMDSFQSNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 327 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 3/131 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF Sbjct: 9 RNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFT 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + V++ V PE R L A EAVH + ++I ++G+ E ++N + Sbjct: 67 QGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPET-VYNEFL 125 Query: 151 EVPSITAKANW 161 + ++ K ++ Sbjct: 126 QYEAMAEKHDF 136 >gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] Length = 328 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 3/131 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF Sbjct: 10 RNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFT 67 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + V++ V PE R L A EAVH + ++I ++G+ E ++N + Sbjct: 68 QGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPET-VYNEFL 126 Query: 151 EVPSITAKANW 161 + ++ K ++ Sbjct: 127 QYEAMAEKHDF 137 >gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 340 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] Length = 340 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPGSNETLTDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 345 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 13/165 (7%) Query: 10 IQAGEKRVNVDDKRMLNAR--------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + K V K ++ A + P +Y W ++ +L+ HW+P EVP+ Sbjct: 1 MSVAPKVPEVQAKTIIGANYCEEEGLLKEKIVYKPFRYPWCYDAWLTQQRIHWLPEEVPL 60 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-ECRQYLLRQ 120 +D+ W+ K L E+ ++ + FF ++ V NN L Y + P E + Sbjct: 61 AEDVRDWQKK--LLPHEKNLLTQIFRFFTQADVEV-NNCYLRHYTTVFKPTEVLMMMTAF 117 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 A E VH + +++ ++G+ E E ++ + + + K ++ + Sbjct: 118 ASMETVHVAAYSHLLDTIGMPETE-YSAFLKYKEMKDKYDYMQNF 161 >gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni RM1221] gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni RM1221] gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Campylobacter jejuni subsp. jejuni S3] Length = 340 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter hominis ATCC BAA-381] gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter hominis ATCC BAA-381] Length = 340 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 4/189 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 I + ++++ + + KY WA + + N W P EV DD+ Sbjct: 3 RKKIYNPFSNETLTERKIFSGNPQGILNFTKAKYVWALKLWDIMEANTWFPREVDTTDDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT E+ M + S +S NN+ I +++ PE L RQA+EEA Sbjct: 63 RDYN--FNLTPAEKRMYELVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEA 120 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 HS ++ ++ ++ + +++ M + + K ++ Y + + + Sbjct: 121 NHSKSYAVMVEAICQNTDQIYEMEKFDDVLREKNDYISSIYEELAGEVDENKLLLAMVAN 180 Query: 185 ILTRSLRFL 193 + + F Sbjct: 181 QILEGIYFY 189 >gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium japonicum USDA 110] gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ DL W S +TD ER ++ + FF S+ V Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWAS-GRVTDSERALLTQIFRFFTQSDIEVG 94 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +N + + E VH + ++ +LG+ + E F +R + A Sbjct: 95 DNYFKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYAQMRA 153 Query: 158 KANWALQY 165 KA++ ++ Sbjct: 154 KADYMHEF 161 >gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] Length = 340 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 73/186 (39%), Gaps = 4/186 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I ++ D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPNSNESLGDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 R--CNLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILT 187 ++ ++ ++ + ++ M + ++ K ++ Y + + + + Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDATLREKNDFISGIYEELAGDVDDNKLLLAMVANQIL 183 Query: 188 RSLRFL 193 + F Sbjct: 184 EGVYFY 189 >gi|117530173|ref|YP_851016.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|86990305|dbj|BAE79256.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|117165785|dbj|BAF36093.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|124270949|dbj|BAF45776.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-LMM02] gi|124270951|dbj|BAF45777.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-LMM03] gi|124270953|dbj|BAF45778.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-HPM05] Length = 348 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 8/190 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L PI + +R+ +++ L +KY WA + N W+P + D+ Sbjct: 5 LPPIFNPSGDDSPQKRRLFGGNPTNIINLKDVKYKWASHLFTEMRANIWIPQATDLTPDI 64 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + + R L + +SL + L + ++ PE + Q +E Sbjct: 65 N---NYVTMPPNMRRAFDGMLSYLTFLDSLQTRVLPL-LMPVITAPEVSICMGEQLSQEQ 120 Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRR 182 VHS ++ YII ++ ++ ++RE P + + + Y + + + + Sbjct: 121 VHSQSYAYIIETVIPTDKRDYIYELWREDPVLLKRCEYIQNLYDRYIHEMTMENYTISMV 180 Query: 183 SRILTRSLRF 192 S L + F Sbjct: 181 SDFLLEGIYF 190 >gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] Length = 321 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 67/163 (41%), Gaps = 7/163 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 ++Y WA Y N W+P + + D+ + LTDDER L + +S Sbjct: 9 NDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDS 65 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREV 152 + NI + ++ PE + Q +E +H+ ++QY+I ++ E +++ +R Sbjct: 66 VQTCNIP-HLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVYEFWRTD 124 Query: 153 PSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 + + + + Y + + + + + L L F Sbjct: 125 KLLRDRCEFIAKLYQKYIDDATTENYFIALMADFLLEGLYFYN 167 >gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] Length = 342 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 8/189 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I E +R++ +++ +L +KY WA++ Y + N W+P E+ M +D Sbjct: 6 IFNPEGDREASKRRIIKGNPTNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQ 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F + +S N++ R L+ PE + Q F+EA+H Sbjct: 66 YE--RVLSAHEKRAYEMVLSFLIALDSYQV-NMLKEFARFLTAPELTMAITAQEFQEALH 122 Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSR 184 S+++Q+I+ S+ E++N +RE + + Y + + K Sbjct: 123 SYSYQFILESVVDPVKADEIYNYWREDKVLMERNRVIADLYNDFVRKQDEETFLKAVFGN 182 Query: 185 ILTRSLRFL 193 + SL F Sbjct: 183 YVLESLYFY 191 >gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6] gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 376L; AltName: Full=Ribonucleotide reductase small subunit gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6] Length = 360 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P Y + K+ +HW+P+EVPM DD+ WK N L D++R + FF Sbjct: 7 RNYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDWK--NRLNDNQRDFLTNIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNM 148 + VA+ PE + A E VH + Y++ +LG+ E F M Sbjct: 65 QGDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEATYKEFLM 124 Query: 149 YREVPSITAKANWALQYTQT 168 Y E+ K ++ +++ + Sbjct: 125 YEEM---KDKQDYIKKFSDS 141 >gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 346 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 86/188 (45%), Gaps = 8/188 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + +R++ +++ +L +KY WA + N W+P EVP+ DD + Sbjct: 10 LFNEHGERDWGKRRIIGGNPTNIMELTNVKYEWAQKLSDIMLRNFWIPEEVPLLDDAKQY 69 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT DE+ R L F +S++ ++ + +++ PE L F EA+HS Sbjct: 70 ---LELTADEQWAYDRMLSFVIFMDSILTVSMP-NLINYVTAPEINMCLSIHNFHEALHS 125 Query: 129 HTFQYIITSLGLDEGE--LFNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRRSRI 185 ++ Y++ S+ E +++++RE + + + A + +P+ ++ + ++ Sbjct: 126 KSYGYVLESVVPAERRQYIYDLWREDRQLLERNRYIANTFQLFADNPTDEHFVRACMAQY 185 Query: 186 LTRSLRFL 193 + + F Sbjct: 186 VLEGIYFY 193 >gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] Length = 331 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 4/147 (2%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K N+ +KR L +S + P Y WA+E ++ + HW+ TEVPM +D+ WK L Sbjct: 2 KVKNMTEKRNLLTQS-RDYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWK--MRL 58 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+ER + + FF + V++ V PE R L A EAVH + ++ Sbjct: 59 NDNERDFLTKVFRFFTQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHL 118 Query: 135 ITSLGLDEGELFNMYREVPSITAKANW 161 I ++G+ + ++N + + ++ AK + Sbjct: 119 IETIGMPDA-IYNEFLQYEAMAAKHEF 144 >gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii] Length = 309 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 12/162 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+K ++ + W E+ + DL W LT DER K LGFFAS+ Sbjct: 8 PIKNLDLYDMWKKHVRCFWTKDEINITSSDLREWND---LTPDERQFFKCILGFFASTNI 64 Query: 95 LVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 +V++N+ L + E R + Q E +HS T+ ++T+ +E EL Sbjct: 65 IVSDNLALRFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNELLYSII 124 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 P + K+ WA+++ + F + +R + + + F Sbjct: 125 SWPCLNVKSRWAVKWM----NDEFATYAERLVAFAVVEGIMF 162 >gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500] Length = 1292 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 18/137 (13%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W+ K L D+ER +I LGFF S ++ NI+ + PE R + Q Sbjct: 60 LLNDVRDWQCK--LDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQ 117 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E + S + +I + D E +FN +P + K W L+ S Sbjct: 118 IAMENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLKSMNNSKS------ 171 Query: 178 NKRRRSRILTRSLRFLC 194 + R + F Sbjct: 172 -------LAERLIAFAA 181 >gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] Length = 309 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 4/160 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WA NN W P V M DD+A S N L +R M + L F ++ + Sbjct: 3 ISPMKHTWAKGILDRMENNTWFPHVVNMADDVA---SYNRLNAADRFMFDKALAFLSNLD 59 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 + NNI I +H+++PE L RQA+EEA+H ++ II ++ LD ++ + Sbjct: 60 GIQFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDG 119 Query: 154 SITAKANWALQYTQTL-SSPSFHYWNKRRRSRILTRSLRF 192 + K + L+ ++ L S + S +L + F Sbjct: 120 LLAQKNQFILKQSRLLGEKFSAEGFALSCVSNVLLEGVYF 159 >gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Francisella cf. novicida 3523] Length = 410 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia sennetsu str. Miyayama] gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia sennetsu str. Miyayama] Length = 322 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 5/163 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HW+P E+PM DD+ W K T E+ ++ + FF Sbjct: 7 RLSYKPFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHKICGT--EKNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + + PE L A E +H + +++ ++G+ E E + + Sbjct: 65 QADVEVHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETE-YLAFT 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + K + + + +P+ F Sbjct: 124 KYKQMKEKCEYLKAF--KMDNPTEIAKTLAVYGAFTEGLQLFA 164 >gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis WY96-3418] gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 410 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] Length = 345 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 81/179 (45%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S+V +++ WA+ Y + N W P E+ M +D+ + + L Sbjct: 16 NASTRIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDVKQY---DKLEPK 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER + +G A +S+ + + + R+L++ + +F+E VH+ ++ Y+++S Sbjct: 73 EREAFDKIIGLLAFLDSIQTD-YSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLSS 131 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L + E+F ++ + + ++ + Y +S+P+ + I+ L F Sbjct: 132 LTTKAKQDEIFEYWKHDKVLRERNDFIAEGYEAFVSNPTPETFLHSIVYDIILEGLNFY 190 >gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 343 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 79/171 (46%), Gaps = 6/171 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S+V ++ WA+ Y + N W+P EVPM D+ W + L D ER K+ Sbjct: 21 GQSSNVLNWDDCRFPWAYPMYRNMLRNFWIPDEVPMTADIKQWST--ELGDHERDTFKKV 78 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A +S+ + + +L++ + +F+E VH+ ++ Y+++SL ++ Sbjct: 79 IGLLAFLDSVQTD-YSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKSEQD 137 Query: 144 ELFNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E+F ++ + + ++ A Y + + P+ + + ++ L F Sbjct: 138 EIFEYWKTDEVLRERNDFLAAGYQRFVDDPTPQTFMESVVYDVILEGLFFY 188 >gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis SCHU S4] gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis FSC198] gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. mediasiatica FSC147] gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis MA00-2987] gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp. tularensis FSC033] gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis NE061598] Length = 410 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. novicida U112] gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp. novicida GA99-3549] gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta subunit [Francisella novicida U112] gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549] gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] Length = 410 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] Length = 390 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 2/162 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + R + KR++N RS +LPLKY A+ Y NHW P + M D W Sbjct: 43 LDKAKARARLAGKRVINGLRSAELNVLPLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQW 102 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+ ER +I+ +G+F+++E +V ++++ I +L+ E + LR EE++H Sbjct: 103 -NTGALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIHM 161 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 + +II SL +D E+ + ++PS+ K + ++ L Sbjct: 162 DSLLHIIGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELK 203 >gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548] gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548] Length = 410 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] Length = 410 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138] gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata] Length = 335 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L + P+KY W Y W ++ + D+ W++ L+ Sbjct: 2 KEGEKDEVLLMENKRRFVMFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LS 58 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++ L + ++++V NIV L NPE + + Q E ++ + ++ Sbjct: 59 AGQKEFFGNYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLV 118 Query: 136 TSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSS 171 +L D LF + + AK+ WA ++ S Sbjct: 119 DALFTSVDNIPLFKAVCQQEEVKAKSEWAHRWVFDDES 156 >gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica LVS] gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica OSU18] gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FSC200] gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica LVS] gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica OSU18] gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 410 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct] Length = 445 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 128 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 186 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 187 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 245 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 246 TDKIDFMMD 254 >gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 410 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 410 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVA 160 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N N E R L A E +H + + +LGL + E ++ + E ++ Sbjct: 161 VGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219 Query: 156 TAKANWALQ 164 T K ++ + Sbjct: 220 TDKIDFMMD 228 >gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like, partial [Xenopus (Silurana) tropicalis] Length = 120 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 55/92 (59%), Positives = 72/92 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S + ++RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+AL Sbjct: 29 SAAASQQRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIAL 88 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 WK NGLT+DER +++RNLGFF +++SL ANN Sbjct: 89 WKDPNGLTEDERRIVRRNLGFFTTADSLAANN 120 >gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus pseudofirmus OF4] gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pseudofirmus OF4] Length = 344 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 80/171 (46%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S+V +++ WA+ Y + N W P E+ M D +++ LT+ E+ K+ Sbjct: 23 GESSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDTKQFQN---LTETEQEAFKKI 79 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EG 143 +G A +S+ + L + +L++ + +F+E VH+ ++ Y+++SL + Sbjct: 80 IGLLAFLDSVQTD-YSLKVADYLTDSSLVALMSVLSFQEVVHNQSYSYVLSSLVPKATQD 138 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E+F+ ++ P + + + + Y + ++P+ + ++ + F Sbjct: 139 EIFDYWKNDPVLKERNEFIVDGYEEFANNPTPDTLARSIVYDVILEGVNFY 189 >gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus granularis] Length = 141 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+V + + E R + Q E +HS + +I + D Sbjct: 1 HVLAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAV 60 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 LFN +P +T KA WAL + + S+ + R + + F Sbjct: 61 QRDYLFNAVETMPCVTKKAQWALDWISSDSAD----FGTRIVAFAAVEGIFF 108 >gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] Length = 345 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 78/179 (43%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S++ +++ WA+ KY N W P E+ M D+ K LT+ Sbjct: 16 NASTAIINGKSSNILNWDDVRFSWAYPKYKRMLGNFWTPFEINMSKDI---KQFPNLTEQ 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + +G A +S+ + + +L++ ++ A +E VH+H++ Y+++S Sbjct: 73 EQDTFLKVIGLLALLDSIQTD-YAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSS 131 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + E+F+ +R P++ + ++ Y +P+ ++ L F Sbjct: 132 IVSKNKQDEVFDYWRTEPTLRKRNDFITNGYQGFAENPNIENLLHSIVYDVILEGLFFY 190 >gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] Length = 345 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 75/179 (41%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S++ +++ WA+ KY N W P E+ M D+ K L Sbjct: 16 NKSTSIINGECSNILNWDDVRFSWAYPKYKKMLANFWTPFEINMSQDI---KQFPELRKS 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + +G A +S+ + + ++++ ++ A +E +H+H++ Y+++S Sbjct: 73 EQEAFLKIIGLLALLDSIQTD-YAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSS 131 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L + E+F +R P + + + + Y +PS K ++ L F Sbjct: 132 LVPKQKQDEVFEFWRTEPILAERNEFVVNGYKDFAENPSAENLLKSIVFDVVLEGLFFY 190 >gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] Length = 353 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 80/174 (45%), Gaps = 8/174 (4%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N S++ +++ WA+ KY N W P E+ M D+ + L+++E+ Sbjct: 28 IINGECSNILNWDDVRFQWAFPKYKRMLANFWTPFEINMSQDIKQFPD---LSEEEKEAF 84 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140 + +G A +S+ + + +L++ ++ A +E +H+H++ Y+++S+ Sbjct: 85 LKIIGLLALLDSIQTD-YAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSIVDKN 143 Query: 141 DEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E+F +R P++ + + A Y SP+ K ++ L F Sbjct: 144 KQDEVFEFWRTEPALIKRNEFVASGYRNFAESPTVDSLLKSIIFDVVLEGLFFY 197 >gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit, partial [Hydra magnipapillata] Length = 261 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 9/165 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 A +++ ++ +LN + P+ K+ W+ Y + +W E+ +D Sbjct: 26 EYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDFSNDRH 85 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + + + IKR L FFA ++S+V NI + + ++ E Q E Sbjct: 86 DFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSK-ITVKEAEIAYGFQQMMEDT 141 Query: 127 HSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQT 168 HS + ++ + D EL N ++ V SI WA ++ + Sbjct: 142 HSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINS 186 >gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] Length = 345 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 78/179 (43%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S+V +++ WA+ Y + N W P E+ M D K LT+ Sbjct: 16 NASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDA---KQFPTLTET 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K+ +G A +S+ + + +L++ + +F+E VH+ ++ Y+++S Sbjct: 73 EQEAFKKIIGLLAFLDSVQTD-YSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSS 131 Query: 138 LGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L + E+F ++ + + + + Y + + +P+ + + ++ L F Sbjct: 132 LVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNFY 190 >gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small chain [Hydra magnipapillata] Length = 363 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 9/165 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 A +++ ++ +LN + P+ K+ W+ Y + +W E+ +D Sbjct: 26 EYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDFSNDRH 85 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + + + IKR L FFA ++S+V NI + + ++ E Q E Sbjct: 86 DFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSK-ITVKEAEIAYGFQQMMEDT 141 Query: 127 HSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQT 168 HS + ++ + D EL N ++ V SI WA ++ + Sbjct: 142 HSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINS 186 >gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus] Length = 384 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P KY WA + + HW+ TEV ++DD+ WKS LT E+ I L F Sbjct: 73 CFKPFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQL 131 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E ++ + Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 191 KEMTDKLDFM 200 >gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium QM B1551] gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium DSM 319] gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium QM B1551] gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium DSM 319] Length = 347 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S++ +++ WA+ KY N W P E+ M D+ K LT DE+ + Sbjct: 24 GKSSNILNWDDVRFSWAFPKYKRMLANFWTPFEINMGQDI---KQFPQLTADEQESFLKI 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A +S+ ++ + ++++ ++ A +E VH+H++ Y+++SL + Sbjct: 81 IGLLALLDSIQSD-YASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSLVPKGKQD 139 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E+F +R + A+ ++ Y + + K ++ L F Sbjct: 140 EVFEYWRTDEKLRARNDFITNGYKAFSEEATVENFLKSMVYDVILEGLFFY 190 >gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] Length = 384 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P KY WA + + HW+ TEV ++DD+ WKS L+ E+ I L F Sbjct: 73 CFKPFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQL 131 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E ++ + Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 191 KEMTDKLDFM 200 >gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein [European catfish virus] gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein [European sheatfish virus] Length = 202 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HWM TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 147 EEMTDKLDFM 156 >gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein [Epizootic haematopoietic necrosis virus] Length = 202 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 147 EEMTDKLDFM 156 >gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii] Length = 87 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 W+ Y A + W EV + D+A W+S L DER I L FFA+S+ +V N Sbjct: 1 PDIWQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNEN 57 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 +V + + E R + Q E +HS Sbjct: 58 LVERFSKEVQVTEARFFYGFQIAIENIHSE 87 >gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 395 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 8/151 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y + K+ +HW+P EVPM DD+ W N L D+++ + FF Sbjct: 7 RSYYKPFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDWN--NRLDDNQKKFLTNIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + VA + PE ++ A EAVH + ++I +LG+ E + + Sbjct: 65 QGDVDVAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPES-TYREF 123 Query: 150 REVPSITAKANWALQYTQ----TLSSPSFHY 176 E + K ++ ++ +L SF Sbjct: 124 LEYHEMKEKQDYIKKFQHGNYGSLKDDSFMT 154 >gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus] Length = 387 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 190 EEMTDKLDFM 199 >gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod iridovirus/15/04.11.92/DNK] gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein [Pike-perch iridovirus] Length = 202 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 147 EEMTDKLDFM 156 >gi|114560571|ref|XP_513941.2| PREDICTED: hypothetical protein [Pan troglodytes] Length = 403 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E I R L FFA+S+ +V N+V + + E R + Q E HS + +I Sbjct: 106 EESDFISRVLAFFAASDGIVNENLVERFSQEVQITEARCFYDFQIAMENTHSEMYSLLID 165 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWAL 163 + D E LFN P + KANWAL Sbjct: 166 TYIKDSKEREFLFNTIET-PCV-KKANWAL 193 >gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein [Short-finned eel ranavirus] Length = 202 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 147 EEMTDKLDFM 156 >gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein [Ranavirus maxima/9995205/DNK] Length = 202 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 147 EEMTDKLDFM 156 >gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein [Bohle iridovirus] Length = 202 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 147 GEMTDKLDFM 156 >gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506] gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] Length = 387 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 190 GEMTDKLDFM 199 >gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] Length = 387 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 190 GEMTDKLDFM 199 >gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 357 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 D P +Y WA+E + N HW+ TE+ MQ D+ W LTD E+ +I L Sbjct: 5 EDRLNFKPFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDWNK--NLTDQEKNVIGDILKG 62 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 FA +E+ V N I + PE + E +H+ + Y+ LGLD F+ Sbjct: 63 FAQTETEVGNYWSEMIPKWFPIPEIKMMGQAFGSFETIHAAAYSYLNDILGLDN---FHA 119 Query: 149 YREVPSITAK 158 + E I K Sbjct: 120 FLEDDVIMNK 129 >gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein [Rana esculenta virus] Length = 202 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 147 EEMTDKLDFM 156 >gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus] gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus] Length = 387 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 190 EEMTDKLDFM 199 >gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] Length = 319 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 4/168 (2%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 V K +S +L + Y Y A NN+W+P E + +D + Sbjct: 5 TAVDEVIKKDGKVCQSYTYKLDSVVYPEILNLYTKAKNNYWIPEEYDLANDKHEF--YEK 62 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L D ER + +GFF+S+E V NI+ I + + N E R +L Q EE H TF+Y Sbjct: 63 LNDIERHYMLHTVGFFSSAEGWVGQNILE-ISKRIRNTETRMFLGYQLMEEMKHIDTFRY 121 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSPSFHYWNKR 180 I+ L L E++ M+ V I KA++ ++ L P+ + Sbjct: 122 IMDGLDLKPHEVYAMHENVKEIKRKADFEVKRAMALCEEPTEENLIED 169 >gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog virus] Length = 387 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWA 162 +T K ++ Sbjct: 190 VEMTDKLDFM 199 >gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3] gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 048L; AltName: Full=Ribonucleotide reductase small subunit gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent virus] Length = 376 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 4/135 (2%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D P +Y ++K+ + + HW E+ MQDD+ W N L++ E+ + + L F Sbjct: 48 ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWH--NRLSEAEKTFLVQILRF 105 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F + VA V + PE R L EA+H ++ ++I++L L + + Sbjct: 106 FTQGDVDVAVGYVQ-YLQLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNLPDV-TYQE 163 Query: 149 YREVPSITAKANWAL 163 + + ++ K + Sbjct: 164 FLKYKAMKDKHEFVF 178 >gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 243 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 43/85 (50%), Positives = 58/85 (68%) Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++ Sbjct: 1 NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60 Query: 170 SSPSFHYWNKRRRSRILTRSLRFLC 194 S P F +L + + C Sbjct: 61 SDPKFETGTVDTDKELLRNLIAYYC 85 >gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 49/85 (57%), Positives = 62/85 (72%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGF 88 D+ALWK+ GLTDDER ++ RNLGF Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGF 151 >gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 326 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 7/157 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY E Y W P E+ +Q D+ +KS LT E+ + +G+FASSE LV Sbjct: 20 KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ S +D +++N+ E + Sbjct: 77 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKKIYNITLEDKLLKE 136 Query: 158 KANWALQYTQTLS----SPSFHYWNKRRRSRILTRSL 190 K ++ ++ P K+ + IL ++ Sbjct: 137 KQELIVRAVDRITYGKADPDTLEGKKQILTSILLNNI 173 >gi|156843271|ref|XP_001644704.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM 70294] gi|156115352|gb|EDO16846.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM 70294] Length = 361 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 6/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + + +L L+P+K+ ++ Y W E+ D+ W K Sbjct: 32 EVEESQSKEPILMENKSRFVLMPIKFHTVYDGYKKREALFWPAEEIDFSHDIINWGKKA- 90 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 +D ++ +IK++L F SS L + + I + PE + + + E +H + Sbjct: 91 -SDHDKSIIKKSLAFLCSS-VLGSFYLPEHISSEVQIPEAKCFYGFEIMVENIHGEVYSL 148 Query: 134 IITSLGLDEGELFNMYREVP---SITAKANWALQYTQTLSS 171 I L + E+ M+++V I K ++A ++ SS Sbjct: 149 AIDQLVHNTDEIKKMFKDVDNAKFIERKKSFAERWFDKESS 189 >gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 75/179 (41%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S+V +++ WA+ Y + N W P E+ D K LT+ Sbjct: 17 NASTGILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDA---KQFPTLTET 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K+ +G A +S+ + +L++ +F+E VH+ ++ Y+++S Sbjct: 74 EQEAFKKIIGLLAFLDSVQTD-YSXRAAEYLTDSSLAALXSVLSFQEVVHNQSYSYVLSS 132 Query: 138 LGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L + E+F ++ + + + + Y + + +P+ + + ++ L F Sbjct: 133 LVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNFY 191 >gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus flavithermus WK1] gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus WK1] Length = 345 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 7/184 (3%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 N + S + +KY ++ Y N W P E+ M DD+ W Sbjct: 10 EPSHPNKATSIINGKASGILNWNDIKYSHFYDIYKMLLGNFWTPFEINMSDDIKQWH--- 66 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++ ER +G + +S V N + A+ ++++P + +E VH+ ++ Sbjct: 67 ALSERERDAFLHIIGLLSILDS-VQPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYS 125 Query: 133 YIITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRS 189 Y++ S+ ++ F M R P I + ++ Y P+ + + + ++ Sbjct: 126 YVLASIEKLSEQHRAFEMARTNPHIYKRNEHVIRVYEAFREQPTVETFCRALVASLVLEG 185 Query: 190 LRFL 193 + F Sbjct: 186 INFY 189 >gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 134 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 IK L FFA+S+ +V N+V + E + + Q + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKT 126 >gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 130 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 IK L FFA+S+ +V N+V + E + + Q + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKT 126 >gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] Length = 82 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y + W E+ + DL W++ LT +E+ IK L FFA+S+ +V N+ Sbjct: 1 YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFS 57 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHT 130 + PE R + Q E +HS T Sbjct: 58 CEVQIPEARAFYGFQTGMETIHSET 82 >gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] Length = 374 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA E N HW E+ + DD+ WK L D E+ I + L F + Sbjct: 73 PFHYPWAVELRSLHENMHWTEKEISLADDVTDWK-IGKLLDVEKKFITQILRLFTQLDVS 131 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V N E R L A E H + + +LGL E + ++ + + + Sbjct: 132 VGQLYHNTFIPIFKNNEIRNMLCSFACREGTHQQAYALLNDTLGLPESD-YSAFLKYKQM 190 Query: 156 TAKANWA 162 T K ++ Sbjct: 191 TDKTDFM 197 >gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium dendrobatidis JAM81] Length = 356 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 11/185 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + D+ +L L P+++ W+ Y + N W EV M DDL ++ L+ Sbjct: 13 DTTDEPLLKPNPRRFVLFPIQFNEIWQAYKNLEANFWSAEEVEMSDDLNGFEQ---LSRK 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ ++ + L I+ + PE R + Q ++ +HS I+ Sbjct: 70 EQSLMLQITSILCMGCGLNNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDM 129 Query: 138 LG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR-----SRILTRS 189 +L ++ +++PS T WA + P L Sbjct: 130 FSESEKQRDDLLDVIQQLPSRTMWTEWARTHMTRSEEPFALRVTSLAIFQAIHQVSLRDI 189 Query: 190 LRFLC 194 + F+ Sbjct: 190 IAFIA 194 >gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis] Length = 849 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 27/173 (15%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN---------------------HWMPTE 58 K +L+ D + PLK W +Y A + W + Sbjct: 555 HPKPLLDENPDRYCMFPLKEDRVWSQYKKAEASRPSGQAPNDPLCMAHTTFWTTFWTAED 614 Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 V D W+ + L ER + L + A+S+ L+ +N+V + E R + Sbjct: 615 VDFSSDARDWQDR--LAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFYA 672 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMY-REV---PSITAKANWALQYTQ 167 Q F++ VH+ I+ +L + E R V P+ AKA W ++ Sbjct: 673 FQLFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAWVRKWIN 725 >gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] Length = 155 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ + ++ +L L P++Y W+ Y A + W E+ + DL W Sbjct: 62 FVGDVELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 120 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 N + D+ER I L FFA+S+ + N+V Sbjct: 121 -NRMNDNERHFISHVLAFFAASDGI-HENLVERFSNE 155 >gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 282 Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 13/194 (6%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLP-LKYGWAWEKYLSACNNHW-----MPTEVP 60 I ++D+++ P KY WA + + W P EV Sbjct: 3 RKKIYNPSSNETLNDRKVFGGNPHGILTSPKAKYTWALKL----LGSLWKQIPGFPKEVD 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 DD+ + LT ++ M S +S NN+ I +++ PE L RQ Sbjct: 59 TTDDVRDYA--CNLTTAKKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQ 116 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 A+EEA HS ++ ++ ++ + ++ M + + K ++ Y + + Sbjct: 117 AYEEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAGEVTDEKLLL 176 Query: 180 RRRSRILTRSLRFL 193 + + + F Sbjct: 177 AMVANQILEGVYFY 190 >gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] Length = 326 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 7/157 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS L+ E+ + +G+FASSE LV Sbjct: 20 RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---LSPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ S +D ++N+ E + Sbjct: 77 NVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKRIYNITLEDKLLKE 136 Query: 158 KANWALQYTQTLS----SPSFHYWNKRRRSRILTRSL 190 K ++ ++ P K+ + IL ++ Sbjct: 137 KQELIVRAVDRITYGKADPDTIEGKKQILTSILLNNI 173 >gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella succinogenes] Length = 283 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D + GLT E+L R L +SL NN++ + ++++PE L+RQ Sbjct: 1 MTPDKRDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 58 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNK 179 AFEEA+HS ++ ++ S+ + E++ M+R + +K + A Y + +P+ K Sbjct: 59 AFEEALHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELAKNPTDSAMLK 118 Query: 180 RRRSRILTRSLRFLC 194 + + + F Sbjct: 119 AMFANQILEGIYFYA 133 >gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] Length = 319 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y +HW+P EV D W+ L+ +E+ K L FFA + LV N+V Sbjct: 20 YYQKLKKSHWIPEEVDTSKDAQDWQ---LLSKEEKSFAKLILAFFAQFDGLVVENLVRHF 76 Query: 105 YRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKAN 160 + + E + + QA E +H+ T+ +I L + + SI A+ Sbjct: 77 QQEVSSFAKEIEWFYILQAANELIHNETYMNLINVLLPPSKRAKALDAISNYASIRKIAD 136 Query: 161 WALQYTQ 167 W ++ Sbjct: 137 WVEKWMN 143 >gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] Length = 347 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 7/172 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y ++ Y + N W E+ MQDD+ W LT E+ + R Sbjct: 26 GEASGILNWNDIAYPHMYDLYQTLLANFWKAQEINMQDDIKQWAE---LTPAEQDVFLRI 82 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 AS +SL + + ++++P + A +EAVH+ ++ Y+++SL ++ Sbjct: 83 NTQLASLDSLQTPTMSQ-VMDYVTDPSFKAIFAIVAQQEAVHNESYSYVLSSLVNQQEQT 141 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 F +E P I + + L Y + PS + + + + F Sbjct: 142 RRFQEAKEDPLIQRRNDVILSAYERFRQHPSPQHLFELAVQSLNLEGVYFYA 193 >gi|47200896|emb|CAF87761.1| unnamed protein product [Tetraodon nigroviridis] Length = 441 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 V + + E R + Q E +HS + +I + + E LFN +P + Sbjct: 234 VERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKK 293 Query: 158 KANWALQYT 166 KA+WAL + Sbjct: 294 KADWALNWI 302 >gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] Length = 329 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS LT E+ + ++G+FASSE LV Sbjct: 23 RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ + +D ++N+ E + Sbjct: 80 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLEDKLLME 139 Query: 158 KANWALQYTQTLS----SPSFHYWNKRRRSRILTRSL 190 K ++ ++ P K+ + IL ++ Sbjct: 140 KQELIIRAVDRITYGKADPDTLEGKKQILTAILLNNI 176 >gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] Length = 346 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 23 RMLNARSDVNQL----LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 R+ ++ S + Q+ P Y ++ + HW+ E + DD+ W++++ +DDE Sbjct: 2 RVADSESKLFQVSSTYKPFLYQEFYDLMTKHEDAHWVKQEAELGDDVNDWRNRS--SDDE 59 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R IK L F + +VA+N N E +L+ A E +H + + Sbjct: 60 RSFIKEILTVFTQGDVVVADNYKSIFIPAFKNNEVSNWLVGVAAREVIHQDAYAMANETF 119 Query: 139 GLDEGELFNMYREVPSITAKAN-WALQYTQTL 169 GL + +F +RE + + + A QY ++ Sbjct: 120 GLPDS-MFGRFREYQEMRERNDLMATQYDPSM 150 >gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] Length = 294 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EVP+ DD+ WK+ L++ E+ ++ + FF ++ V N + E Sbjct: 2 PEEVPLADDVQDWKT--VLSEKEKNLLVQIFRFFTQADIEVNNCYMKHYSNIFKPTEVCM 59 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFH 175 L + E +H + Y++ ++G+ E E + + + + K ++ ++ + + H Sbjct: 60 MLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVMKKKYDYMQRFEECRKNDKRH 118 >gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 122 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 IK L FFA+S+ +V N+V + E + + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYG 119 >gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] Length = 348 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 75/184 (40%), Gaps = 7/184 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N + S + + Y ++ Y + N W E+ MQDD+ W + Sbjct: 15 PEHPNKSTGVLNGQSSGLLNWNDIAYPQMYDLYQALLANFWKAQEINMQDDIKQW---DS 71 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ E+ + R AS +SL + A ++++ + + +EAVH+ ++ Y Sbjct: 72 LSSVEKDVFLRINTQLASLDSLQTPTMSQA-MDYVTDSSFKAIFAVISQQEAVHTESYSY 130 Query: 134 IITSL--GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSL 190 I++SL ++ E FN + P + + L Y + +P+ K + I + Sbjct: 131 ILSSLVSVSEQNERFNQAKSDPVVQKRNELILDAYEEFRQNPTPQNLFKLSVNSINLEGI 190 Query: 191 RFLC 194 F Sbjct: 191 YFYA 194 >gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit [Drosophila melanogaster] Length = 214 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSIT 156 +V + + E R + Q E VHS + +I + D + LFN +P++ Sbjct: 1 LVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVK 60 Query: 157 AKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 KA+WAL + + S+ + +R + + F Sbjct: 61 RKADWALSWISSKSA----NFGERIIAFAAVEGIFF 92 >gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------CAERLVAFAC 84 >gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVHVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sp. AT1b] gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b] Length = 346 Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 7/183 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 K N + S + + Y + Y +N W+P E+ M D+ W Sbjct: 11 PKHPNRATAIIGGETSSIVNWNDIAYPQFYTIYKQLLSNFWIPDEISMSKDMQQWPQ--- 67 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+ E+ KR +G + +S+ I+ + S+ L A +E VH+ ++ Y Sbjct: 68 LTEREQDAFKRIIGLLSILDSVQTRYILESSMFS-SDSSVHAVLAVIAQQEVVHNQSYSY 126 Query: 134 IITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSL 190 +++SL ++ +FN+ ++ + + + L Y +P+ + K + ++ + Sbjct: 127 VLSSLVPLAEQNRIFNIAKDDEMVMKRNQFILDLYEAFRETPNAENFAKSLVASVILEGI 186 Query: 191 RFL 193 F Sbjct: 187 NFY 189 >gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia psychrerythraea 34H] gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea 34H] Length = 376 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y + + W P EV + D A W+S LTD E+ + NL + +S+ A Sbjct: 33 RYIAFEKLIEKQLSFFWRPEEVDVSKDRADWQS---LTDSEKHIFISNLKYQTLLDSMAA 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 ++ + +S PE ++ AF E +HS ++ +I+ +L + GE+F+ P+I Sbjct: 90 RSVNAVLLPLVSLPEVETWVETWAFSETIHSRSYTHILRNLFTEPGEIFDDIIVNPAILK 149 Query: 158 KANWALQYTQTL 169 +A+ ++ + Sbjct: 150 RASSIAKFFDDV 161 >gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus 1] Length = 378 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 2/130 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P Y WA E N HW E+ + DD++ WK+ LT E+ I + L F Sbjct: 71 VFKPFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQL 129 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + N E R L A E H + + +LGL E E ++ + Sbjct: 130 DVSVGHIYHNIFIPIFKNNELRNMLCSFACREGTHQQAYALLNDTLGLPETE-YSTFLNY 188 Query: 153 PSITAKANWA 162 +T K + Sbjct: 189 KEMTNKTIYM 198 >gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sediminis HAW-EB3] gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3] Length = 376 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V++ K+ + + W P E+ + D A W+ Sbjct: 6 FNQVKNDQLLEPMFLGNSVNVSRYDQQKHVSFEKLIEKQLSFFWRPEEIDISKDRADWQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LT+ E+ + NL + +S+ A ++ + +S PE ++ AF E +HS + Sbjct: 65 --RLTESEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +I+ +L + GE+F+ P+I +A +Y + Sbjct: 123 YTHILRNLFTEPGEVFDDIVVNPAILKRATSIAKYFDDV 161 >gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------CAERLVAFAC 84 >gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] Length = 376 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 3/160 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + + + +V++ K+ + + W P EV + D A +K Sbjct: 5 IFSQVPNDPLKEPMFFGNNVNVSRYDQQKHPVFEQLIEKQLSFFWRPEEVDLSRDRADFK 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L E+ + NL + +S+ + +A +S PE ++ AF E +HS Sbjct: 65 K---LPAHEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPELETWVETWAFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +II ++ D E+F+ SI +A+ Y + Sbjct: 122 SYTHIIRNIVNDPSEIFDDIVNNESIIQRASSVSHYYDSF 161 >gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sibiricum 255-15] gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum 255-15] Length = 347 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 73/171 (42%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y +N W+P E+ M D+ W N L++ E+ KR Sbjct: 24 GETSSIVNWNDIAYPQFYSIYKQLLSNFWIPDEISMSKDMQQW---NQLSEREQDAFKRI 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G + +S+ I+ + S+ L A +E VH+ ++ Y+++SL ++ Sbjct: 81 IGLLSILDSVQTRYILES-AMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSLVPLSEQN 139 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F++ ++ + + + L Y + + + K + I+ + F Sbjct: 140 RIFDIAKDDDMVMKRNAFILDLYEDFQNDRTPENFAKSLVASIVLEGINFY 190 >gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------CAERLVAFAC 84 >gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] Length = 376 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + + + E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDLSTDRKDF---MNMPEHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE + AF E +HS ++ +II ++ + E+F+ P I Sbjct: 90 RSPNIAFLPVVSLPELETWFETWAFSETIHSRSYTHIIRNIITEPSEVFDQIVTNPEIIR 149 Query: 158 KANWALQYTQTL 169 +A+ + Sbjct: 150 RADSVTRLYDEF 161 >gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 343 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 78/179 (43%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N DK + + S + ++ ++ Y NHW+P+E+PM D ++ LT Sbjct: 14 NKSDKLIEGSCSSILNWDDIRKPEMYKLYKVLIANHWIPSEIPMNKDKLQFEQ---LTAQ 70 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K+ +G A +S+ N V + + ++ +E +H+ ++ Y+++S Sbjct: 71 EQETYKKIIGLLAVLDSMQT-NFVTDVGNYFTDSSLVAIAAIINQQEVIHNQSYSYVLSS 129 Query: 138 LGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + E E+F +++ + + + + Y + P+ + + + ++ + F Sbjct: 130 ITNYEVQKEVFEYWKKDEILLERNLFIAELYQRFRDEPTPATFFEAVVADMILEGIFFY 188 >gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] Length = 347 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y L + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFELARTHPTIIKRNAPIMGAYDDFLRDKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 ALIQSSILEGINFY 192 >gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q + +HS + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 349 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 65 GDARQY---NELSSREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMRDKTAETLIR 180 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 181 ALIQSSILEGINFY 194 >gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 347 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDFMRDKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 ALIQSSILEGINFY 192 >gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 349 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 65 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMRDKTAETLIR 180 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 181 ALIQSSILEGINFY 194 >gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. 8004] gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris] Length = 347 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N + + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGSTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDFMRDKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 ALIQSSILEGINFY 192 >gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp. MWYL1] gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1] Length = 377 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 3/147 (2%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +V + K+ + + W P EV + D ++ L + E+ + Sbjct: 18 MFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSTDRKDFQ---RLEEHEQHIF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D Sbjct: 75 LSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDP 134 Query: 143 GELFNMYREVPSITAKANWALQYTQTL 169 ++F+ IT +A+ +Y L Sbjct: 135 TKIFDDIVTNEEITKRADSVSKYYDRL 161 >gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus] Length = 181 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 15/117 (12%) Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 K L FFA S+ +V N+V Y + E R + QA E +H+ + +I +L Sbjct: 1 DFFKCILAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLI 60 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +E E +F+ + P IT K WA Q+ + R + R + F Sbjct: 61 PNEDEQRSIFSSFMTTPGITEKTRWAKQWLE------------RENLSFVERLVAFA 105 >gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 349 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 65 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMREKTAETLIR 180 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 181 SLIQSSILEGINFY 194 >gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 347 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R +LN ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTSILNGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMREKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 SLIQSSILEGINFY 192 >gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-064] Length = 229 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 79/198 (39%), Gaps = 9/198 (4%) Query: 1 MANN-TGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTE 58 MAN L+ I+ E ++N + + + Y + Y N+W+P E Sbjct: 1 MANQKEQLTRIKILEPLFPNRSTSIINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDE 60 Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 V M+ D + L++ E+ +G A+ +S I I ++++P Sbjct: 61 VDMKSDAKQY---PALSEQEKYAFDAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAA 116 Query: 119 RQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFH 175 A +E +H+ ++ Y++ S+ ++ +F + R P+I + + Y +++ + Sbjct: 117 IIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPTIIKRNEPIMDAYDDFMNNKTGE 176 Query: 176 YWNKRRRSRILTRSLRFL 193 K + + F Sbjct: 177 TLVKALIQSSILEGINFY 194 >gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] Length = 405 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 62 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 118 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 119 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQK 178 Query: 158 KANWALQYTQTL 169 +A Y +L Sbjct: 179 RAEGISHYYDSL 190 >gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] Length = 376 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 3/147 (2%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +V++ KY + + W P EV + D + L + E+ + Sbjct: 18 MFFGENVNVSRYDTQKYKIFEQLIEKQLSFFWRPEEVDLSTDRKDFA---ALPEHEKHIF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D Sbjct: 75 LSNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNVISDP 134 Query: 143 GELFNMYREVPSITAKANWALQYTQTL 169 ++F+ IT +A +Y L Sbjct: 135 SKVFDDIVSNEYITKRAESVTKYYDDL 161 >gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 347 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMREKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 SLIQSSILEGINFY 192 >gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 347 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMREKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 SLIQSSILEGINFY 192 >gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas axonopodis pv. citri str. 306] gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] Length = 347 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMREKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 SLIQSSILEGINFY 192 >gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 347 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMREKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 SLIQSSILEGINFY 192 >gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 103P14B1] gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC8] gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis CO72] Length = 361 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 72/185 (38%), Gaps = 3/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + L +V++ +Y + + W P E+ + D + Sbjct: 4 VFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRRDF- 62 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L + E+ + NL + +S+ + + + +S PE ++ AF E++H+ Sbjct: 63 --IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESIHAR 120 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 ++ +II ++ + E+ + P I +A +Y L S S Y ++ R Sbjct: 121 SYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYELRK 180 Query: 190 LRFLC 194 +LC Sbjct: 181 RLYLC 185 >gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC1] Length = 361 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 72/185 (38%), Gaps = 3/185 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + L +V++ +Y + + W P E+ + D + Sbjct: 4 VFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRRDF- 62 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L + E+ + NL + +S+ + + + +S PE ++ AF E++H+ Sbjct: 63 --IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESIHAR 120 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 ++ +II ++ + E+ + P I +A +Y L S S Y ++ R Sbjct: 121 SYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYELRK 180 Query: 190 LRFLC 194 +LC Sbjct: 181 RLYLC 185 >gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 347 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + + + Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDFMREKTAETLIR 178 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 179 SLIQSSILEGINFY 192 >gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------FAERLVAFAC 84 >gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 396 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 53 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 109 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 110 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQK 169 Query: 158 KANWALQYTQTL 169 +A Y +L Sbjct: 170 RAEGISHYYDSL 181 >gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511] gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100] gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511] Length = 343 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 73/181 (40%), Gaps = 7/181 (3%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 N + S + ++Y + Y N+W+P EV M+ D + N L+ Sbjct: 12 NPNKSTAIINGEASGIVNWNDIRYPSFYRAYKELTTNYWLPDEVDMKSDAKQY---NHLS 68 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++E+ +G A+ +S I I ++S+ A +EA+H+ ++ Y++ Sbjct: 69 EEEKYAFDSIIGLLATLDSPQTRFIY-NIAEYVSDASVHAITAIIAQQEAIHNESYSYVL 127 Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRF 192 S+ ++ +F R P+I + ++ Y +++ + K + + F Sbjct: 128 ASITNLQEQNRVFEEARTHPTIIKRNAPIMKSYDDFMNNKTPENMVKALVQSSILEGINF 187 Query: 193 L 193 Sbjct: 188 Y 188 >gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-003] Length = 336 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + + Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|308067265|ref|YP_003868870.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 343 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S + ++ ++ Y NHW+P E+PM D + + L + Sbjct: 13 NRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDASQF---PVLDAE 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K N+G A +S+ V + R+ ++ +E VH+ ++ Y+++S Sbjct: 70 EQRTFKINIGLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSYVLSS 128 Query: 138 LGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L D + E+F ++ P + + + Y + + + + + ++ + F Sbjct: 129 LVSDQEQKEIFEYWKNDPVLLERNTFISDIYQEFRDEQNPQTFFQAMVADLILEGIFFY 187 >gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL N1-067] gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL S4-171] Length = 349 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQK 143 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + + Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes str. 4b F2365] gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes Clip81459] gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J1-175] gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL S4-378] gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 1816] gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 220] Length = 349 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + + Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] Length = 376 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A QY TL Sbjct: 150 RAEGISQYYDTL 161 >gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] Length = 343 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 72/179 (40%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S + ++ ++ Y NHW+ E+PM D + L + Sbjct: 13 NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQF---PTLDSE 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y+++S Sbjct: 70 EQRTFKINISLLAVLDSMQTM-FVSDVKRYFTDSSLEAISAIIGQQEVVHNQSYSYVLSS 128 Query: 138 LGLD--EGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + D + E+F ++ P + + + Y +PS + + + ++ + F Sbjct: 129 IVSDQEQKEIFEYWKHDPVLLERNQFISDIYQNFRDNPSPQTFFEAMVADLILEGIFFY 187 >gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] Length = 376 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 3/160 (1%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + +V + KY + + W P EV + D ++ Sbjct: 9 TPNDQLKEPMFFGQHVNVARFDQQKYEIFEKLIERQLSFFWRPEEVDVSKDRIDYQQ--- 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ + Sbjct: 66 LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTH 125 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 II ++ D E+F+ I +A Y L + + Sbjct: 126 IIRNIINDPSEVFDDIVANEEILKRAKDIAGYYDDLINAT 165 >gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes EGD-e] gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes Finland 1988] gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL R2-561] gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 10403S] gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes LO28] gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e] gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria welshimeri serovar 6b str. SLCC5334] gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes L99] Length = 349 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + + Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] Length = 349 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + ++ Y + +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMEAYDEFMNNKTGETLVKALIQSSILEGINFY 194 >gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua Clip11262] gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262] Length = 349 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMAAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes J0161] gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] Length = 349 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PTLSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + + Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL J1-023] Length = 349 Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMTAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------CAERLVAFAC 84 >gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWIDGSES-------------CAERLVAFAC 84 >gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] Length = 394 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 KY + W P EV +Q D + +K+ LT +++ + NL + +S+ Sbjct: 48 FKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQ 104 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 +A + S PE + E +HS ++ YII ++ D E+F+ + P I Sbjct: 105 GRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDPKIM 164 Query: 157 AKANWALQYTQTL 169 ++A + L Sbjct: 165 SRAESVTKAYDDL 177 >gi|110806205|ref|YP_689725.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 5 str. 8401] gi|110615753|gb|ABF04420.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 5 str. 8401] gi|281601680|gb|ADA74664.1| putative ribonucleotide reductase, beta subunit [Shigella flexneri 2002017] Length = 453 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 110 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 166 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 167 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 226 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 227 RAEGISSYYDEL 238 >gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 376 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y +L Sbjct: 150 RAEGISHYYDSL 161 >gi|331642864|ref|ZP_08343999.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331039662|gb|EGI11882.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] Length = 449 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 106 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 162 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 163 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 222 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 223 RAEGISSYYDEL 234 >gi|331653669|ref|ZP_08354670.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] gi|331048518|gb|EGI20594.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] Length = 449 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 106 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 162 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 163 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 222 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 223 RAEGISSYYDEL 234 >gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E LF+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 KA WAL++ S R + F C Sbjct: 61 KAQWALRWMDGSES-------------CAERLVAFAC 84 >gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 380 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 3/160 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + KY + + W P EV + D + Sbjct: 9 IFSQKKNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY- 67 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L D E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 68 --NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSR 125 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +II ++ D +F+ E I +A Y L Sbjct: 126 SYTHIIRNIVNDPAIIFDDIVENEEILKRAKDISAYYDKL 165 >gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1] gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1] Length = 346 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 80/192 (41%), Gaps = 9/192 (4%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L I+ R ++ + S + ++Y + Y +N W+P + + +D+ Sbjct: 4 LKEIKLMTPRYPNRGTDIIGGKMSGIMNWNDIRYPQMYTIYKQIRSNFWIPQRISLVEDV 63 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + T + +G ++ +S+ +VL R LS P + A +EA Sbjct: 64 RQFPNLPKRTQE---AYLDVIGQLSTLDSIQTR-LVLEFGRFLSEPTYQPIAANIAQQEA 119 Query: 126 VHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQ-TLSSPSFHYWNKRR 181 H ++ Y+++S+ D + E+F+ + + + + +Y Q + +P+ + + Sbjct: 120 THEESYSYVLSSVVPDTNKQNEVFDKAKTNEDVLKRNDRVYKYYQEFVDNPTPQTFFRAL 179 Query: 182 RSRILTRSLRFL 193 + ++ + F Sbjct: 180 VACVVLEGIYFY 191 >gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali symbiont] Length = 376 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D ++F+ I A+A +Y L Sbjct: 127 IRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDL 161 >gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] Length = 369 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y + + W P EV +Q D + L ++E+ + NL + +S+ Sbjct: 33 RYPIFEQLIEKQLSFFWRPEEVDLQRDRKDF---IALPENEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ AF E VHS ++ +II ++ + ++F P I Sbjct: 90 RSPNVAFLPIVSLPELETWIETWAFSETVHSRSYTHIIRNIVTEPDQIFEDIVTTPEIIE 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAESISGYYDQL 161 >gi|329922162|ref|ZP_08277907.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. HGF5] gi|328942352|gb|EGG38619.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. HGF5] Length = 370 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S + ++ ++ Y NHW+ E+PM D + L + Sbjct: 40 NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQF---PRLDPE 96 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y+++S Sbjct: 97 EQRTFKINISLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSYVLSS 155 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + ++ E+F ++ P + + + Y +PS + + + ++ + F Sbjct: 156 IVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRDNPSPQSFFEAMVADLILEGIFFY 214 >gi|254523600|ref|ZP_05135655.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] gi|219721191|gb|EED39716.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] Length = 346 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N R+ + + Y + Y N W+P EV M+ Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L+ E+ +G A+ +S I + ++++P Sbjct: 62 ADARQY---GELSGREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ ++ +F + R P+I + + Y + + K Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRVFELARTHPTIIKRNAPIMGAYDDFMREKTAETLLK 177 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 178 SLIQSSILEGINFY 191 >gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide reductase 1) (B2 protein) (R2 protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 3/139 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTLSSPSFHY 176 +A Y L + HY Sbjct: 150 RAKDISAYYDDLIEMTNHY 168 >gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] Length = 388 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 4/147 (2%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + +VN + M + V + KY + W P EV +Q D + +++ Sbjct: 18 KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT-- 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ +++ + NL + +S+ +A + S PE + F E +HS ++ Sbjct: 76 -LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134 Query: 133 YIITSLGLDEGELFNMYREVPSITAKA 159 YII ++ D GE+F+ + ++ +A Sbjct: 135 YIIKNVYPDPGEVFDTILDDENVMERA 161 >gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] Length = 349 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 7/168 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S + + Y + Y N+W+P EV M+ D + L+++ER +G Sbjct: 31 SGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKGDAKQY---PELSEEERYAYDAIIGL 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELF 146 A+ +S I + ++++P A +E +H+ ++ Y++ S+ ++ +F Sbjct: 88 LATLDSPQTRFIY-NVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQNQNRIF 146 Query: 147 NMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + R P+I + + Y L + K + + F Sbjct: 147 ELARTHPTIIKRNQPIMDAYDDFLEHKTGETLVKSLIQSSILEGINFY 194 >gi|170767354|ref|ZP_02901807.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] gi|170123688|gb|EDS92619.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] Length = 376 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAEGISRYYDEL 161 >gi|288549884|ref|ZP_06390831.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288317051|gb|EFC55989.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 420 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 7/170 (4%) Query: 4 NTGLSPI----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 +TGL+ + + K + + +V + KY + + W P EV Sbjct: 39 STGLTAMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEV 98 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D ++ L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 99 DVSRDRIDFQ---ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 155 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 156 WAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDEL 205 >gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] Length = 349 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 69/171 (40%), Gaps = 7/171 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L+++E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PNLSEEEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I I ++++P +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + ++ Y +++ + K + + F Sbjct: 144 RVFELARTHPTIIKRNEPIMEAYDDFMNNKTGETLVKALIQSSILEGINFY 194 >gi|295098106|emb|CBK87196.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 420 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 7/170 (4%) Query: 4 NTGLSPI----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 +TGL+ + + K + + +V + KY + + W P EV Sbjct: 39 STGLTAMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEV 98 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D ++ L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 99 DVSRDRIDFQ---ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 155 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 156 WAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDEL 205 >gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2] Length = 384 Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 4/159 (2%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA G++ + E+ V + KY W P EV Sbjct: 1 MAEVKGMT-VFNTEEVNTKKQPMFFGKPLGVQRYDNFKYPSFENLTKQQLGYFWRPEEVS 59 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 +Q D +++ L +++ + NL + +S+ +A + S PE + Sbjct: 60 LQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPELEACMEVW 116 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +F E +HS ++ Y+I ++ D E+F+ I ++A Sbjct: 117 SFMEMIHSRSYTYVIKNVYADPSEVFDKILSDDRILSRA 155 >gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] Length = 388 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 9/178 (5%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + +VN + M + V + KY S W P EV +Q D + +++ Sbjct: 18 KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDRLTQSQLGYFWRPEEVSLQKDRSDYQT-- 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT +++ + NL + +S+ +A + S PE + F E +HS ++ Sbjct: 76 -LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSS----PSFHYWNKRRRSRI 185 YII ++ D E+F+ + ++ ++A+ + Y + ++S + W+ R+ + Sbjct: 135 YIIKNVYPDPSEVFDTILDDENVMSRASSVTKSYDEFINSAHEFDNCQTWDLARQGHL 192 >gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica] Length = 376 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + N L Sbjct: 10 KNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y L Sbjct: 127 IRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDL 161 >gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] Length = 343 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 72/179 (40%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S + ++ ++ Y NHW+ E+PM D + L + Sbjct: 13 NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQF---PRLDPE 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y+++S Sbjct: 70 EQRTFKINISLLAVLDSMQTM-FVSDVKRYFTDSSLEAISAIIGQQEVVHNQSYSYVLSS 128 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + ++ E+F ++ P + + + Y +PS + + + ++ + F Sbjct: 129 IVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRDNPSPQSFFEAMVADLILEGIFFY 187 >gi|145633337|ref|ZP_01789068.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae 3655] gi|144986183|gb|EDJ92773.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae 3655] Length = 376 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 I ++ D +F+ I +A Y L S Y Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYG 169 >gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] Length = 387 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 3/139 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV +Q D ++ LT +++ + NL + +S+ Sbjct: 42 KYPVFDKLTQQQLGYFWRPEEVSLQKDRGDYQQ---LTPEQKHIFTSNLKYQIMLDSVQG 98 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +A + S PE + F E +HS ++ YII ++ D E+F+ + +I Sbjct: 99 RAPGMAFAPYCSLPELEGCINVWQFMEMIHSRSYTYIIKNVYSDPSEVFDTIIKDTNILQ 158 Query: 158 KANWALQYTQTLSSPSFHY 176 +A + + + Y Sbjct: 159 RAESVTKSYDDFVNDAHEY 177 >gi|16273547|ref|NP_439802.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae Rd KW20] gi|68250262|ref|YP_249374.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 86-028NP] gi|145629252|ref|ZP_01785051.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.1-21] gi|145631490|ref|ZP_01787259.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|145639184|ref|ZP_01794791.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittII] gi|145641092|ref|ZP_01796673.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|260581255|ref|ZP_05849073.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae RdAW] gi|260582634|ref|ZP_05850423.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae NT127] gi|319776092|ref|YP_004138580.1| ribonucleoside-diphosphate reductase subunit beta [Haemophilus influenzae F3047] gi|319896901|ref|YP_004135096.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3031] gi|329123256|ref|ZP_08251824.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus aegyptius ATCC 11116] gi|1172943|sp|P43755|RIR2_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB) [Haemophilus influenzae Rd KW20] gi|68058461|gb|AAX88714.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae 86-028NP] gi|144978755|gb|EDJ88478.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.1-21] gi|144982920|gb|EDJ90433.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|145271746|gb|EDK11656.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittII] gi|145274253|gb|EDK14118.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.4-21] gi|260092082|gb|EEW76027.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae RdAW] gi|260094306|gb|EEW78205.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae NT127] gi|301170418|emb|CBW30024.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Haemophilus influenzae 10810] gi|309750762|gb|ADO80746.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus influenzae R2866] gi|309972945|gb|ADO96146.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus influenzae R2846] gi|317432405|emb|CBY80760.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3031] gi|317450683|emb|CBY86903.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3047] gi|327471465|gb|EGF16913.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus aegyptius ATCC 11116] Length = 376 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 I ++ D +F+ I +A Y L S Y Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYG 169 >gi|326796346|ref|YP_004314166.1| ribonucleoside-diphosphate reductase [Marinomonas mediterranea MMB-1] gi|326547110|gb|ADZ92330.1| Ribonucleoside-diphosphate reductase [Marinomonas mediterranea MMB-1] Length = 377 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ + L +V + K+ + + W P EV + D + L + Sbjct: 13 SLKEPMFLGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDF---LNLAEH 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II + Sbjct: 70 EQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRN 129 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + D +F+ IT +A+ +Y L Sbjct: 130 IVNDPTVIFDDIIVNEEITKRADSVSRYYDDL 161 >gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans GPE PC73] gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans] Length = 346 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 68/174 (39%), Gaps = 8/174 (4%) Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N + + + Y + Y N W+P EV M+ D + L+ E+ Sbjct: 22 IINGTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKGDAKQY---GELSAREKNAY 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 +G A+ +S I + ++++P +E +H+ ++ Y++ S+ Sbjct: 79 DSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLA 137 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 D+ +F + R P+I A+ +Q Y + + + + + F Sbjct: 138 DQNRVFEIARTHPTIVARNQPIMQAYDDFMREKTAETLLRSLIQSSILEGINFY 191 >gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group] Length = 244 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 16/93 (17%) Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161 + E R + Q E +HS + ++ + D E LF VP++ KA+W Sbjct: 1 MSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAIDTVPAVRRKADW 60 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 A+++ R R + F C Sbjct: 61 AMRWIDGGE-------------RFAERLVAFAC 80 >gi|324020907|gb|EGB90126.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 117-3] Length = 420 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 77 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 133 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 134 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 193 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 194 RAEGISSYYDEL 205 >gi|145634465|ref|ZP_01790175.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae PittAA] gi|229845068|ref|ZP_04465204.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 6P18H1] gi|229846892|ref|ZP_04466999.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 7P49H1] gi|145268445|gb|EDK08439.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae PittAA] gi|229810381|gb|EEP46100.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 7P49H1] gi|229812040|gb|EEP47733.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 6P18H1] Length = 376 Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 I ++ D +F+ I +A Y L S Y Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYG 169 >gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1] gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1] Length = 579 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 13/180 (7%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + + + D L P Y + ++ W TE+ + D+ W+ ++++ER Sbjct: 60 DHHKDIVGKYDHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQ---ISENER 116 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 +++ L FFA ++LV + I + PEC+ ++ Q E VH + + +L Sbjct: 117 DCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALV 175 Query: 140 LDE---GELFNMYR--EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 D+ +L N Y+ E I K +W + ++ + S + ++ T ++ F Sbjct: 176 KDKIYLADLVNAYKDPEFAPIKKKVDWLGKII-SVENDS---RGEMVVGQVCTEAIMFAA 231 >gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] Length = 377 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 ++ ++ + +V + K+ + + W P EV + D ++ Sbjct: 6 FNRKRFDSMKEPMFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDFQH 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 66 ---LEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ + G +F+ E IT +A ++ L Sbjct: 123 YTHIIRNIVNEPGVVFDDITENTEITKRAESVSKWYDDL 161 >gi|320175005|gb|EFW50120.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae CDC 74-1112] Length = 376 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFTSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|332100965|gb|EGJ04311.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] Length = 420 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 77 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 133 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 134 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 193 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 194 RAEGISSYYDEL 205 >gi|117624429|ref|YP_853342.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli APEC O1] gi|237704711|ref|ZP_04535192.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|115513553|gb|ABJ01628.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli APEC O1] gi|226901077|gb|EEH87336.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|323952030|gb|EGB47904.1| ribonucleotide reductase [Escherichia coli H252] gi|323956004|gb|EGB51757.1| ribonucleotide reductase [Escherichia coli H263] Length = 420 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 77 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 133 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 134 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 193 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 194 RAEGISSYYDEL 205 >gi|166367085|ref|YP_001659358.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] gi|166089458|dbj|BAG04166.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] Length = 283 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER L + +S+ NI + ++ PE + Q +EA+H+ Sbjct: 3 EYGHLTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQ 61 Query: 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRIL 186 ++QY+I ++ E GE+++ +R + + + Y Q + + + + L Sbjct: 62 SYQYLIETIIPSERRGEVYDFWRTDKVLKDRCQFIASLYQQYIDKQTTESYFIALVADYL 121 Query: 187 TRSLRFLC 194 SL F Sbjct: 122 LESLYFYN 129 >gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] Length = 376 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ I A+A +Y L Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDL 161 >gi|253687496|ref|YP_003016686.1| ribonucleotide reductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754074|gb|ACT12150.1| ribonucleotide reductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 376 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y +L Sbjct: 127 IRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSL 161 >gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus nematophila ATCC 19061] Length = 376 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + N L Sbjct: 10 KNNQLQEPMFFGQSVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NSL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ E I +A Y L Sbjct: 127 IRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDL 161 >gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella violacea DSS12] gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella violacea DSS12] Length = 376 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILK 149 Query: 158 KANWALQYTQTL 169 +A QY L Sbjct: 150 RATDIAQYYDDL 161 >gi|293395206|ref|ZP_06639492.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] gi|291422383|gb|EFE95626.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] Length = 376 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + K+ + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWSFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y L Sbjct: 127 IRNIVNDPALVFDDIVTNEEIKKRAKDISGYYDDL 161 >gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] Length = 378 Score = 99.1 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 35 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 91 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ E I Sbjct: 92 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILK 151 Query: 158 KANWALQYTQTL 169 +A + L Sbjct: 152 RAKDISGFYDDL 163 >gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB] gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB] Length = 376 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I A+A +Y L Sbjct: 127 IRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDL 161 >gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] Length = 380 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 3/160 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + KY + + W P EV + D + Sbjct: 9 IFSQKKNNQLLEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVARDRIDY- 67 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L D E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 68 --NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSR 125 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +II ++ D +F+ E I +A Y TL Sbjct: 126 SYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTL 165 >gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 343 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S + ++ ++ Y NHW+P E+PM D + + L + Sbjct: 13 NRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDASQF---PMLDAE 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K N+G A +S+ V + R+ ++ +E VH+ ++ Y+++S Sbjct: 70 EQRTFKINIGLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSYVLSS 128 Query: 138 LGL--DEGELFNMYREVPSITAKANWA-LQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L ++ E+F ++ P + + + Y + + + + + ++ + F Sbjct: 129 LVSEQEQKEIFEYWKNDPVLLERNTFISAIYQEFRDEQNPQTFFQAMVADLILEGIFFY 187 >gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] Length = 376 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I A+A +Y L Sbjct: 127 IRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDL 161 >gi|227114436|ref|ZP_03828092.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 376 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y +L Sbjct: 127 IRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSL 161 >gi|157879968|pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein gi|157879969|pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein Length = 375 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|189403970|ref|ZP_02786340.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|217327202|ref|ZP_03443285.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|301026864|ref|ZP_07190263.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301647674|ref|ZP_07247468.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|189368305|gb|EDU86721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|217319569|gb|EEC27994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|260448673|gb|ACX39095.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1] gi|299879524|gb|EFI87735.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301074204|gb|EFK89010.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|326339582|gb|EGD63393.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1125] Length = 393 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 50 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 106 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 107 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 166 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 167 RAEGISSYYDEL 178 >gi|261822457|ref|YP_003260563.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium wasabiae WPP163] gi|261606470|gb|ACX88956.1| ribonucleotide reductase [Pectobacterium wasabiae WPP163] Length = 376 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y +L Sbjct: 127 IRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSL 161 >gi|170019452|ref|YP_001724406.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ATCC 8739] gi|187775748|ref|ZP_02798054.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188024880|ref|ZP_02774660.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189010171|ref|ZP_02805091.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189402101|ref|ZP_02779989.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189403050|ref|ZP_02792862.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189404930|ref|ZP_02812148.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189405663|ref|ZP_02823406.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208806716|ref|ZP_03249053.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208812585|ref|ZP_03253914.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208820390|ref|ZP_03260710.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209398142|ref|YP_002271641.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|293415528|ref|ZP_06658171.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|300948933|ref|ZP_07162994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300958921|ref|ZP_07171024.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|307138893|ref|ZP_07498249.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli H736] gi|169754380|gb|ACA77079.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739] gi|187771218|gb|EDU35062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188016038|gb|EDU54160.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189002108|gb|EDU71094.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189357709|gb|EDU76128.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189362845|gb|EDU81264.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189372811|gb|EDU91227.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189378868|gb|EDU97284.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208726517|gb|EDZ76118.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208733862|gb|EDZ82549.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740513|gb|EDZ88195.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209159542|gb|ACI36975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|291433176|gb|EFF06155.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|300314424|gb|EFJ64208.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|300451587|gb|EFK15207.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|315136867|dbj|BAJ44026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli DH1] gi|320192144|gb|EFW66789.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC1212] gi|320641061|gb|EFX10540.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. G5101] gi|320646450|gb|EFX15369.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. 493-89] gi|320651547|gb|EFX19927.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. H 2687] gi|320657299|gb|EFX25101.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667818|gb|EFX34726.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323936632|gb|EGB32918.1| ribonucleotide reductase [Escherichia coli E1520] gi|323941071|gb|EGB37258.1| ribonucleotide reductase [Escherichia coli E482] gi|326344044|gb|EGD67805.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1044] Length = 389 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 46 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 102 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 103 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 162 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 163 RAEGISSYYDEL 174 >gi|193062401|ref|ZP_03043496.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|192932067|gb|EDV84666.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] Length = 393 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 50 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 106 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 107 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 166 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 167 RAEGISSYYDEL 178 >gi|194427189|ref|ZP_03059740.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194436109|ref|ZP_03068211.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|300918603|ref|ZP_07135191.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300931418|ref|ZP_07146747.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|301303305|ref|ZP_07209430.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|194414810|gb|EDX31081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194424837|gb|EDX40822.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|300414255|gb|EFJ97565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300460788|gb|EFK24281.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300841479|gb|EFK69239.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|323961541|gb|EGB57149.1| ribonucleotide reductase [Escherichia coli H489] gi|323973062|gb|EGB68256.1| ribonucleotide reductase [Escherichia coli TA007] Length = 393 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 50 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 106 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 107 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 166 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 167 RAEGISSYYDEL 178 >gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] Length = 386 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV +Q D + +++ L+D+++ + NL + +S+ Sbjct: 41 KYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT---LSDEQKHIFTSNLKYQIMLDSVQG 97 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +A + S PE + F E VHS ++ YII ++ D E+F+ + + + Sbjct: 98 RGPGMAFIPYCSLPELEACMTVWEFMEMVHSRSYTYIIKNVYSDPSEVFDTILDDEKVMS 157 Query: 158 KA 159 +A Sbjct: 158 RA 159 >gi|332093862|gb|EGI98916.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella boydii 5216-82] Length = 376 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|312967536|ref|ZP_07781751.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 2362-75] gi|312287733|gb|EFR15638.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 2362-75] Length = 359 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 16 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 73 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 132 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 133 RAEGISSYYDEL 144 >gi|494379|pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization gi|494380|pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization gi|494553|pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli Ribonucleotide Reductase Protein R2 gi|494554|pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli Ribonucleotide Reductase Protein R2 Length = 375 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|1942079|pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|1942080|pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|15825694|pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Nitric Oxide gi|15825695|pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Nitric Oxide gi|15826771|pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Hydrogen Peroxide And Hydroxylamine gi|15826772|pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Hydrogen Peroxide And Hydroxylamine gi|29726528|pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2 From E. Coli In Its Oxidised (Met) Form gi|29726529|pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2 From E. Coli In Its Oxidised (Met) Form Length = 375 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|193068232|ref|ZP_03049196.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|300903617|ref|ZP_07121535.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300926340|ref|ZP_07142140.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|301328725|ref|ZP_07221778.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|30041924|gb|AAP17650.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 2a str. 2457T] gi|56383622|gb|AAN43832.2| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 2a str. 301] gi|192958511|gb|EDV88950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|300404353|gb|EFJ87891.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300417617|gb|EFK00928.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300844873|gb|EFK72633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|315255170|gb|EFU35138.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 85-1] Length = 389 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 46 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 102 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 103 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 162 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 163 RAEGISSYYDEL 174 >gi|300936793|ref|ZP_07151685.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] gi|300458078|gb|EFK21571.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] Length = 405 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 62 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 118 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 119 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 178 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 179 RAEGISSYYDEL 190 >gi|300897697|ref|ZP_07116095.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|301022393|ref|ZP_07186277.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331683911|ref|ZP_08384507.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] gi|300358575|gb|EFJ74445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|300397543|gb|EFJ81081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|323967677|gb|EGB63089.1| ribonucleotide reductase [Escherichia coli M863] gi|331078863|gb|EGI50065.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] Length = 393 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 50 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 106 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 107 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 166 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 167 RAEGISSYYDEL 178 >gi|283832326|ref|ZP_06352067.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] gi|291071973|gb|EFE10082.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] Length = 376 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|291283479|ref|YP_003500297.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli O55:H7 str. CB9615] gi|290763352|gb|ADD57313.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli O55:H7 str. CB9615] Length = 389 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 46 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 102 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 103 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIITNEQIQK 162 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 163 RAEGISSYYDEL 174 >gi|15802782|ref|NP_288809.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 EDL933] gi|15832372|ref|NP_311145.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16130170|ref|NP_416738.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|82544520|ref|YP_408467.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii Sb227] gi|82777644|ref|YP_403993.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae Sd197] gi|89109052|ref|AP_002832.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli str. K-12 substr. W3110] gi|157161718|ref|YP_001459036.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli HS] gi|170081853|ref|YP_001731173.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|187731010|ref|YP_001881065.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii CDC 3083-94] gi|188495860|ref|ZP_03003130.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|195935609|ref|ZP_03080991.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC4024] gi|218548311|ref|YP_002382102.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ATCC 35469] gi|218705765|ref|YP_002413284.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UMN026] gi|238901409|ref|YP_002927205.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|254794126|ref|YP_003078963.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256022083|ref|ZP_05435948.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 4_1_40B] gi|261223312|ref|ZP_05937593.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. FRIK2000] gi|261259138|ref|ZP_05951671.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. FRIK966] gi|293405702|ref|ZP_06649694.1| nrdB [Escherichia coli FVEC1412] gi|293410599|ref|ZP_06654175.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|298381383|ref|ZP_06990982.1| nrdB [Escherichia coli FVEC1302] gi|309785072|ref|ZP_07679705.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella dysenteriae 1617] gi|312973510|ref|ZP_07787682.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1827-70] gi|57014104|sp|P69924|RIR2_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|57014105|sp|P69925|RIR2_ECO57 RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|12516573|gb|AAG57364.1|AE005456_1 ribonucleoside diphosphage reductase 1, beta subunit, B2 [Escherichia coli O157:H7 str. EDL933] gi|146967|gb|AAA24224.1| ribonucleoside diphosphate reductase B2 subunit precursor [Escherichia coli] gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|1799582|dbj|BAA16054.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli str. K12 substr. W3110] gi|13362587|dbj|BAB36541.1| ribonucleoside-diphosphate reductase 1 beta subunit [Escherichia coli O157:H7 str. Sakai] gi|81241792|gb|ABB62502.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella dysenteriae Sd197] gi|81245931|gb|ABB66639.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella boydii Sb227] gi|157067398|gb|ABV06653.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli HS] gi|169889688|gb|ACB03395.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|187428002|gb|ACD07276.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii CDC 3083-94] gi|188491059|gb|EDU66162.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|218355852|emb|CAQ88465.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia fergusonii ATCC 35469] gi|218432862|emb|CAR13756.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli UMN026] gi|238863475|gb|ACR65473.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|254593526|gb|ACT72887.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. TW14359] gi|284922226|emb|CBG35308.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli 042] gi|291427910|gb|EFF00937.1| nrdB [Escherichia coli FVEC1412] gi|291471067|gb|EFF13551.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|298278825|gb|EFI20339.1| nrdB [Escherichia coli FVEC1302] gi|308927442|gb|EFP72916.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella dysenteriae 1617] gi|309702545|emb|CBJ01872.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli ETEC H10407] gi|310332105|gb|EFP99340.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1827-70] gi|315615496|gb|EFU96128.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 3431] gi|320184866|gb|EFW59654.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri CDC 796-83] gi|320663001|gb|EFX30318.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|327252504|gb|EGE64163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli STEC_7v] gi|332094036|gb|EGI99088.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella boydii 3594-74] Length = 376 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|170682190|ref|YP_001744431.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SMS-3-5] gi|170519908|gb|ACB18086.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli SMS-3-5] gi|315285847|gb|EFU45287.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 110-3] gi|315298059|gb|EFU57328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 16-3] Length = 393 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 50 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 106 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 107 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 166 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 167 RAEGISSYYDEL 178 >gi|331663742|ref|ZP_08364652.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] gi|323977567|gb|EGB72653.1| ribonucleotide reductase [Escherichia coli TW10509] gi|331059541|gb|EGI31518.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] Length = 389 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 46 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 102 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 103 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 162 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 163 RAEGISSYYDEL 174 >gi|42543283|pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph gi|42543284|pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph gi|42543506|pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli gi|42543507|pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli Length = 375 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|26248623|ref|NP_754663.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli CFT073] gi|74312755|ref|YP_311174.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei Ss046] gi|91211528|ref|YP_541514.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UTI89] gi|110642443|ref|YP_670173.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 536] gi|157157492|ref|YP_001463584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli E24377A] gi|161485800|ref|NP_708125.3| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 301] gi|161486465|ref|NP_837840.2| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 2457T] gi|191166513|ref|ZP_03028343.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|191170278|ref|ZP_03031832.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|194433322|ref|ZP_03065602.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|209919687|ref|YP_002293771.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SE11] gi|215487452|ref|YP_002329883.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|218554798|ref|YP_002387711.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI1] gi|218559152|ref|YP_002392065.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli S88] gi|218695841|ref|YP_002403508.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 55989] gi|218700706|ref|YP_002408335.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI39] gi|227887293|ref|ZP_04005098.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 83972] gi|253772842|ref|YP_003035673.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162246|ref|YP_003045354.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli B str. REL606] gi|256017603|ref|ZP_05431468.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|260844831|ref|YP_003222609.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260856285|ref|YP_003230176.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260868965|ref|YP_003235367.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O111:H- str. 11128] gi|293446578|ref|ZP_06663000.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|300818165|ref|ZP_07098377.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|300822109|ref|ZP_07102251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 119-7] gi|300981251|ref|ZP_07175428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|300983269|ref|ZP_07176508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|301048988|ref|ZP_07195975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|306814652|ref|ZP_07448814.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|307311198|ref|ZP_07590842.1| ribonucleotide reductase [Escherichia coli W] gi|309793115|ref|ZP_07687543.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|331647890|ref|ZP_08348982.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331668939|ref|ZP_08369787.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331678186|ref|ZP_08378861.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|26109028|gb|AAN81231.1|AE016763_190 Ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli CFT073] gi|73856232|gb|AAZ88939.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella sonnei Ss046] gi|91073102|gb|ABE07983.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli UTI89] gi|110344035|gb|ABG70272.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli 536] gi|157079522|gb|ABV19230.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E24377A] gi|190903473|gb|EDV63192.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|190909794|gb|EDV69379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|194418416|gb|EDX34505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|209912946|dbj|BAG78020.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli SE11] gi|215265524|emb|CAS09927.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli O127:H6 str. E2348/69] gi|218352573|emb|CAU98352.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli 55989] gi|218361566|emb|CAQ99157.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli IAI1] gi|218365921|emb|CAR03663.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli S88] gi|218370692|emb|CAR18503.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli IAI39] gi|222033996|emb|CAP76737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli LF82] gi|227835643|gb|EEJ46109.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 83972] gi|242377869|emb|CAQ32637.1| nrdB, subunit of B2 protein and GDP reductase [multifunctional] [Escherichia coli BL21(DE3)] gi|253323886|gb|ACT28488.1| ribonucleotide reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974147|gb|ACT39818.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli B str. REL606] gi|253978314|gb|ACT43984.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli BL21(DE3)] gi|257754934|dbj|BAI26436.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257759978|dbj|BAI31475.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257765321|dbj|BAI36816.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O111:H- str. 11128] gi|281179326|dbj|BAI55656.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli SE15] gi|291323408|gb|EFE62836.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|294490302|gb|ADE89058.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli IHE3034] gi|300299180|gb|EFJ55565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|300307615|gb|EFJ62135.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|300408603|gb|EFJ92141.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|300525239|gb|EFK46308.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 119-7] gi|300529309|gb|EFK50371.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|305852046|gb|EFM52498.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|306908704|gb|EFN39201.1| ribonucleotide reductase [Escherichia coli W] gi|307554301|gb|ADN47076.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli ABU 83972] gi|308123401|gb|EFO60663.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|312946856|gb|ADR27683.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313651060|gb|EFS15459.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri 2a str. 2457T] gi|315061535|gb|ADT75862.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli W] gi|315292180|gb|EFU51532.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 153-1] gi|320178793|gb|EFW53756.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii ATCC 9905] gi|320196104|gb|EFW70728.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli WV_060327] gi|320199830|gb|EFW74419.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli EC4100B] gi|323156512|gb|EFZ42666.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli EPECa14] gi|323161696|gb|EFZ47579.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli E128010] gi|323168602|gb|EFZ54282.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella sonnei 53G] gi|323171914|gb|EFZ57558.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli LT-68] gi|323176838|gb|EFZ62428.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1180] gi|323184146|gb|EFZ69523.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1357] gi|323188037|gb|EFZ73332.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli RN587/1] gi|323377884|gb|ADX50152.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11] gi|324006608|gb|EGB75827.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 57-2] gi|324013118|gb|EGB82337.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 60-1] gi|324117882|gb|EGC11781.1| ribonucleotide reductase [Escherichia coli E1167] gi|325496725|gb|EGC94584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ECD227] gi|330912066|gb|EGH40576.1| ribonucleotide reductase of class 1a (aerobic), beta subunit [Escherichia coli AA86] gi|331043614|gb|EGI15752.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331064133|gb|EGI36044.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331074646|gb|EGI45966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332096162|gb|EGJ01165.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella dysenteriae 155-74] Length = 376 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|331658316|ref|ZP_08359278.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] gi|307626227|gb|ADN70531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UM146] gi|331056564|gb|EGI28573.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] Length = 389 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 46 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 102 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 103 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 162 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 163 RAEGISSYYDEL 174 >gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 376 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y +L Sbjct: 127 IRNIVNDPSLVFDDIVTNDEILKRAKDISGYYDSL 161 >gi|218690398|ref|YP_002398610.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ED1a] gi|218427962|emb|CAR08882.2| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli ED1a] Length = 376 Score = 98.8 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|297520407|ref|ZP_06938793.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli OP50] Length = 225 Score = 98.4 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 50 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 106 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 107 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 166 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 167 RAEGISSYYDEL 178 >gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 111 Score = 98.4 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHF---STLTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSN 110 IK L FFA+S+ +V N+V + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQI 111 >gi|46143780|ref|ZP_00134247.2| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 336 Score = 98.4 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++S L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 >gi|304414248|ref|ZP_07395616.1| ribonucleotide reductase beta subunit [Candidatus Regiella insecticola LSR1] gi|304283462|gb|EFL91858.1| ribonucleotide reductase beta subunit [Candidatus Regiella insecticola LSR1] Length = 381 Score = 98.4 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 3/169 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M + + K + + +V + KY + + W P E+ Sbjct: 1 MPEDIMAYSTFSQNKNDQLKEPMFFGQSVNVARFDQQKYAIFEKLIEQQLSFFWRPEEID 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D ++ L E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 61 VSQDRTDYQK---LPPHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETW 117 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 +F E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 118 SFSETIHSRSYTHIIRNIVNDPSLIFDDIVTNEEILKRAEDISAYYDDL 166 >gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis HI4320] Length = 376 Score = 98.4 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149 Query: 158 KANWALQYTQTLSSPS 173 +A Y L + + Sbjct: 150 RARDISSYYDELINLT 165 >gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] Length = 376 Score = 98.4 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149 Query: 158 KANWALQYTQTLSSPS 173 +A Y L + + Sbjct: 150 RARDISSYYDELINLT 165 >gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella woodyi ATCC 51908] gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILK 149 Query: 158 KANWALQYTQTL 169 +A+ +Y TL Sbjct: 150 RASDIAEYYDTL 161 >gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp. 638] gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Enterobacter sp. 638] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPDHEKHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISHYYDEL 161 >gi|324112772|gb|EGC06748.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 389 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 46 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 102 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 103 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 162 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 163 RAEGISAYYDEL 174 >gi|161502570|ref|YP_001569682.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863917|gb|ABX20540.1| hypothetical protein SARI_00614 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISAYYDEL 161 >gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] Length = 397 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV +Q D +++ L +++ + NL + +S+ Sbjct: 52 KYPVFDKLTTQQLGYFWRPEEVSLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSIQG 108 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +A + S PE + F E +HS ++ YII ++ D E+F+ I Sbjct: 109 RGPGMAFIPYCSLPELEACMEVWGFMEMIHSRSYTYIIKNVYSDPSEVFDKIVTDDRILE 168 Query: 158 KA 159 +A Sbjct: 169 RA 170 >gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENKEILK 149 Query: 158 KANWALQYTQTLSSPS 173 +A Y L + + Sbjct: 150 RARDISSYYDELINLT 165 >gi|296103863|ref|YP_003614009.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058322|gb|ADF63060.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGIAHYYDEL 161 >gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus hirsutus] Length = 249 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V +N+V + + PE R + Q +HS + +I SL D E +FN Sbjct: 1 IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60 Query: 152 VPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 VP + K +W L+ + + + + + F Sbjct: 61 VPCVKKKKDWVLRRI----ADDRVTFPLKVVAFATVEGIFFA 98 >gi|56412825|ref|YP_149900.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361758|ref|YP_002141394.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127082|gb|AAV76588.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093234|emb|CAR58679.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISAYYDEL 161 >gi|190150315|ref|YP_001968840.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253584|ref|ZP_07339722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245900|ref|ZP_07527985.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247988|ref|ZP_07530018.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254872|ref|ZP_07536697.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259315|ref|ZP_07541044.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263658|ref|ZP_07545269.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915446|gb|ACE61698.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647504|gb|EFL77722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853260|gb|EFM85480.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855503|gb|EFM87676.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862169|gb|EFM94138.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866682|gb|EFM98541.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871035|gb|EFN02768.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++S L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 >gi|3891582|pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli gi|3891583|pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli Length = 340 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|205353394|ref|YP_002227195.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273175|emb|CAR38137.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628485|gb|EGE34828.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISAYYDEL 161 >gi|1941986|pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|1941987|pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 340 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|283786035|ref|YP_003365900.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter rodentium ICC168] gi|282949489|emb|CBG89102.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter rodentium ICC168] Length = 376 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|83754022|pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space Group P6(1)22 Length = 340 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] Length = 378 Score = 98.4 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 3/160 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + ++ + + +V + KY + + W P EV + D + Sbjct: 7 IFSQKRNDQLLEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY- 65 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGL D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS Sbjct: 66 --NGLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 123 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +II ++ D +F+ E I +A Y TL Sbjct: 124 SYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTL 163 >gi|126208467|ref|YP_001053692.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae L20] gi|165976419|ref|YP_001652012.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251074|ref|ZP_07337260.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307250239|ref|ZP_07532194.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252630|ref|ZP_07534523.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261475|ref|ZP_07543145.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097259|gb|ABN74087.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876520|gb|ABY69568.1| ribonucleoside-diphosphate reductase, beta chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650084|gb|EFL80254.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306857725|gb|EFM89826.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859875|gb|EFM91895.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306868827|gb|EFN00634.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 376 Score = 98.0 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++S L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 >gi|16765605|ref|NP_461220.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180851|ref|YP_217268.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613001|ref|YP_001586966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549728|ref|ZP_02343487.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992612|ref|ZP_02573709.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237293|ref|ZP_02662351.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242393|ref|ZP_02667325.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261709|ref|ZP_02683682.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466025|ref|ZP_02699895.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817991|ref|ZP_02829991.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442577|ref|YP_002041539.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449379|ref|YP_002046332.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194735273|ref|YP_002115349.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247637|ref|YP_002147234.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262505|ref|ZP_03162579.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242288|ref|YP_002216347.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387602|ref|ZP_03214214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929071|ref|ZP_03220214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207857697|ref|YP_002244348.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161593|ref|ZP_03347303.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|224583238|ref|YP_002637036.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|1172945|sp|P37427|RIR2_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|510349|emb|CAA51453.1| nrdB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420817|gb|AAL21179.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128484|gb|AAX66187.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362365|gb|ABX66133.1| hypothetical protein SPAB_00707 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401240|gb|ACF61462.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407683|gb|ACF67902.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194710775|gb|ACF89996.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631367|gb|EDX49927.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211340|gb|ACH48737.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240760|gb|EDY23380.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289678|gb|EDY29041.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936804|gb|ACH74137.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604700|gb|EDZ03245.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321615|gb|EDZ06814.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325266|gb|EDZ13105.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329222|gb|EDZ15986.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338588|gb|EDZ25352.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344845|gb|EDZ31609.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349363|gb|EDZ35994.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709500|emb|CAR33844.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467765|gb|ACN45595.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247486|emb|CBG25313.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994368|gb|ACY89253.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158836|emb|CBW18349.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913268|dbj|BAJ37242.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086715|emb|CBY96487.1| ribonucleoside diphosphage reductase 1, beta subunit, B2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223022|gb|EFX48093.1| Ribonucleotide reductase of class Ia aerobic, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617030|gb|EFY13936.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617664|gb|EFY14563.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624706|gb|EFY21535.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630255|gb|EFY27025.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634436|gb|EFY31169.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639146|gb|EFY35838.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640143|gb|EFY36809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645769|gb|EFY42293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651544|gb|EFY47919.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656105|gb|EFY52404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659457|gb|EFY55704.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665919|gb|EFY62102.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669843|gb|EFY65984.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673828|gb|EFY69925.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678586|gb|EFY74642.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683618|gb|EFY79632.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687694|gb|EFY83664.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715327|gb|EFZ06898.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130608|gb|ADX18038.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196209|gb|EFZ81366.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198377|gb|EFZ83479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204185|gb|EFZ89196.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208571|gb|EFZ93510.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212337|gb|EFZ97160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218256|gb|EGA02966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222986|gb|EGA07335.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227421|gb|EGA11586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232251|gb|EGA16354.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235716|gb|EGA19800.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241124|gb|EGA25160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244866|gb|EGA28868.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248577|gb|EGA32508.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251597|gb|EGA35465.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255474|gb|EGA39237.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263076|gb|EGA46622.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268136|gb|EGA51613.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270771|gb|EGA54209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624097|gb|EGE30442.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 376 Score = 98.0 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISAYYDEL 161 >gi|307257037|ref|ZP_07538813.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864521|gb|EFM96428.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 376 Score = 98.0 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++S L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 >gi|260913913|ref|ZP_05920387.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] gi|260632000|gb|EEX50177.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L + Sbjct: 127 IRNIVNDPSVVFDDIVTNEEIIKRAKDISCYYDDLIRDT 165 >gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103] gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103] Length = 387 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 21 KNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 77 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 78 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTHI 137 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I A+A QY L Sbjct: 138 IRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDL 172 >gi|157144813|ref|YP_001452132.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157082018|gb|ABV11696.1| hypothetical protein CKO_00540 [Citrobacter koseri ATCC BAA-895] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++S L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQS---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISHYYDEL 161 >gi|322514736|ref|ZP_08067762.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] gi|322119331|gb|EFX91447.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++S L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS---L 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 >gi|168229641|ref|ZP_02654699.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471700|ref|ZP_03077684.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|238913487|ref|ZP_04657324.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194458064|gb|EDX46903.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335835|gb|EDZ22599.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISAYYDEL 161 >gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha275] Length = 345 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|237732274|ref|ZP_04562755.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] gi|226907813|gb|EEH93731.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|261493906|ref|ZP_05990416.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495801|ref|ZP_05992236.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308535|gb|EEY09803.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310439|gb|EEY11632.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +II ++ D +F+ I +A Y L S Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 >gi|190574752|ref|YP_001972597.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas maltophilia K279a] gi|190012674|emb|CAQ46302.1| putative ribonucleoside-diphosphate reductase beta chain [Stenotrophomonas maltophilia K279a] Length = 346 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 72/194 (37%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L E+ +G A+ +S I + ++++P Sbjct: 62 LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ ++ +F + R P+I + + Y + + K Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRIFEIARTHPTIIKRNAPIMGAYDDFMREKTAETLLK 177 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 178 SLIQSSILEGINFY 191 >gi|254361270|ref|ZP_04977413.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] gi|153092766|gb|EDN73809.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +II ++ D +F+ I +A Y L S Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 >gi|194366071|ref|YP_002028681.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas maltophilia R551-3] gi|194348875|gb|ACF51998.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] Length = 346 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 8/194 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N R+ + + Y + Y N W+P EV M+ Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L E+ +G A+ +S I + ++++P Sbjct: 62 LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNK 179 +E +H+ ++ Y++ S+ ++ +F + R P+I + + Y + + K Sbjct: 118 QEVIHNESYSYVLASITDLSNQNRIFEIARTHPTIIKRNAPIMGAYDDFMREKTAETLLK 177 Query: 180 RRRSRILTRSLRFL 193 + + F Sbjct: 178 SLIQSSILEGINFY 191 >gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY E + W P E+ + D ++S L + E+ + NL + +S+ Sbjct: 33 KYPIFEELIEKQLSFFWRPEEIDVSRDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWIETWAFSETIHSRSYTHIIRNIVNDPSCIFDDIVTNNEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|254493923|ref|ZP_05107094.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291] gi|260440303|ref|ZP_05794119.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae DGI2] gi|268594982|ref|ZP_06129149.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae 35/02] gi|268596639|ref|ZP_06130806.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae FA19] gi|268599210|ref|ZP_06133377.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11] gi|268601557|ref|ZP_06135724.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18] gi|268603896|ref|ZP_06138063.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1] gi|268682359|ref|ZP_06149221.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332] gi|268684517|ref|ZP_06151379.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-92-679] gi|268686827|ref|ZP_06153689.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-93-1035] gi|291043595|ref|ZP_06569311.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae DGI2] gi|293398906|ref|ZP_06643071.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria gonorrhoeae F62] gi|59717937|gb|AAW89342.1| putative ribonucleoside diphosphate reductase I beta chain [Neisseria gonorrhoeae FA 1090] gi|226512963|gb|EEH62308.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291] gi|268548371|gb|EEZ43789.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae 35/02] gi|268550427|gb|EEZ45446.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae FA19] gi|268583341|gb|EEZ48017.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11] gi|268585688|gb|EEZ50364.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18] gi|268588027|gb|EEZ52703.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1] gi|268622643|gb|EEZ55043.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332] gi|268624801|gb|EEZ57201.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-92-679] gi|268627111|gb|EEZ59511.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-93-1035] gi|291012058|gb|EFE04047.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae DGI2] gi|291610320|gb|EFF39430.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria gonorrhoeae F62] Length = 384 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea ananatis AJ13355] Length = 376 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I A+A QY L Sbjct: 127 IRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDL 161 >gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis MC58] gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha153] Length = 384 Score = 98.0 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|15602584|ref|NP_245656.1| ribonucleotide-diphosphate reductase subunit beta [Pasteurella multocida subsp. multocida str. Pm70] gi|12721013|gb|AAK02803.1| NrdB [Pasteurella multocida subsp. multocida str. Pm70] Length = 376 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSVIFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 >gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] Length = 377 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|16761204|ref|NP_456821.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141101|ref|NP_804443.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25285831|pir||AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503503|emb|CAD07510.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136727|gb|AAO68292.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 376 Score = 98.0 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISAYYDEL 161 >gi|323945044|gb|EGB41109.1| nrdB protein [Escherichia coli H120] Length = 197 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISSYYDEL 161 >gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis WUE 2594] gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis NZ-05/33] Length = 384 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica ST-640] gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica 020-06] Length = 377 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] Length = 376 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILK 149 Query: 158 KANWALQYTQTL 169 +A QY L Sbjct: 150 RATDIAQYYDDL 161 >gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis 053442] gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis 053442] Length = 384 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis MC58] gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria meningitidis H44/76] gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M13399] gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis CU385] gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240013] gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis H44/76] gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240355] gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M04-240196] Length = 377 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] Length = 384 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA 1090] gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae NCCP11945] gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae 35/02] gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae DGI18] gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA6140] gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA19] gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae MS11] gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID18] gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID1] gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID24-1] gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID332] gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-92-679] gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae NCCP11945] Length = 377 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|317164437|gb|ADV07978.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 377 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis Z2491] gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis Z2491] gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis 8013] Length = 377 Score = 97.6 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|113461104|ref|YP_719172.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus somnus 129PT] gi|170717681|ref|YP_001784756.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus somnus 2336] gi|112823147|gb|ABI25236.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Haemophilus somnus 129PT] gi|168825810|gb|ACA31181.1| Ribonucleoside-diphosphate reductase [Haemophilus somnus 2336] Length = 376 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 3/167 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNNQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 + +II ++ D +F+ I +A Y L S Y Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYG 169 >gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis alpha710] Length = 384 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|213612729|ref|ZP_03370555.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 234 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISAYYDEL 161 >gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis FAM18] gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis FAM18] gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis N1568] gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis OX99.30304] gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M6190] gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M0579] gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis ES14902] gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis 961-5945] gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis G2136] gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240149] Length = 377 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|50120137|ref|YP_049304.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49610663|emb|CAG74108.1| ribonucleoside-diphosphate reductase 1 beta chain [Pectobacterium atrosepticum SCRI1043] Length = 376 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y +L Sbjct: 127 IRNIVNDPSLVFDDIVANEEILKRAKDISGYYDSL 161 >gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] Length = 377 Score = 97.6 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|301156451|emb|CBW15922.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Haemophilus parainfluenzae T3T1] Length = 376 Score = 97.6 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQTKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +II ++ D +F+ I +A Y L S Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 >gi|167623961|ref|YP_001674255.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella halifaxensis HAW-EB4] gi|167353983|gb|ABZ76596.1| Ribonucleoside-diphosphate reductase [Shewanella halifaxensis HAW-EB4] Length = 376 Score = 97.6 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILK 149 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 150 RASDIAKYYDHL 161 >gi|33152746|ref|NP_874099.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus ducreyi 35000HP] gi|33148970|gb|AAP96488.1| ribonucleoside-diphosphate reductase, beta chain [Haemophilus ducreyi 35000HP] Length = 376 Score = 97.2 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRARDISCYYDDLIRDS 165 >gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] Length = 387 Score = 97.2 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 3/141 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY W P EV +Q D + + LT++++ + NL + +S+ Sbjct: 42 KYPVFDRLTQQQLGYFWRPEEVSLQKDRSDYAQ---LTENQKHIFTSNLKYQIMLDSVQG 98 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +A + S PE + F E +HS ++ +II ++ + ++F+ E + Sbjct: 99 RGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYTHIIKNVYPNPSDVFDTILEDERVLE 158 Query: 158 KANWALQYTQTLSSPSFHYWN 178 +A+ + + Y N Sbjct: 159 RASSVTESYDDFIQHAQEYGN 179 >gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] Length = 377 Score = 97.2 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + GL D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEIDVSQDRIDYA---GLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ +D +F+ I Sbjct: 90 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNISVDPSSIFDDIVRNKHILE 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAQDISKYYDEL 161 >gi|156933156|ref|YP_001437072.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156531410|gb|ABU76236.1| hypothetical protein ESA_00966 [Cronobacter sakazakii ATCC BAA-894] Length = 376 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISHYYDDL 161 >gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 384 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus bovienii SS-2004] gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus bovienii SS-2004] Length = 376 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLISIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVANEQILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISGYYDVL 161 >gi|152979144|ref|YP_001344773.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus succinogenes 130Z] gi|150840867|gb|ABR74838.1| Ribonucleoside-diphosphate reductase [Actinobacillus succinogenes 130Z] Length = 376 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 >gi|260598671|ref|YP_003211242.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter turicensis z3032] gi|260217848|emb|CBA32365.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Cronobacter turicensis z3032] Length = 376 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEGISHYYDDL 161 >gi|319785673|ref|YP_004145148.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1] gi|317464185|gb|ADV25917.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1] Length = 354 Score = 97.2 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 8/184 (4%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E R ++N + + + Y + Y N W+P EV M+ D + Sbjct: 20 EPRHPNRSTGIINGTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKSDARQY---G 76 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ +G A+ +S I + ++++P +E +H+ ++ Sbjct: 77 ELSAREKNAFDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 135 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRSRILTRS 189 Y++ S+ ++ +F + R P+I + Y + + + + Sbjct: 136 YVLASITDLANQNRVFEIARTHPTILRRNAPIMAAYDDFMREKTAETLLRALIQSSILEG 195 Query: 190 LRFL 193 + F Sbjct: 196 INFY 199 >gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] Length = 388 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 8/147 (5%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ W P EV +Q D A + LTD ++ + NL + +S+ Sbjct: 42 RFPTFDRLTQQQLGYFWRPEEVSLQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQG 98 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +A + S PE + F E +HS ++ YII ++ D ELF+ +I + Sbjct: 99 RAPGMAFIPYCSLPELEGCMQVWQFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNILS 158 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSR 184 +A + S F + Sbjct: 159 RAESVTK-----SYDDFINYAHEYDQS 180 >gi|85059563|ref|YP_455265.1| ribonucleotide-diphosphate reductase subunit beta [Sodalis glossinidius str. 'morsitans'] gi|84780083|dbj|BAE74860.1| ribonucleoside-diphosphate reductase 1 beta subunit [Sodalis glossinidius str. 'morsitans'] Length = 376 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y L Sbjct: 127 IRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDGL 161 >gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph Length = 375 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + ES+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLESIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|127512873|ref|YP_001094070.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella loihica PV-4] gi|126638168|gb|ABO23811.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella loihica PV-4] Length = 376 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEEILK 149 Query: 158 KANWALQYTQTL 169 +A+ Y L Sbjct: 150 RASDIADYYDNL 161 >gi|325578589|ref|ZP_08148689.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159825|gb|EGC71955.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 376 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 >gi|120598753|ref|YP_963327.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. W3-18-1] gi|146293170|ref|YP_001183594.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella putrefaciens CN-32] gi|120558846|gb|ABM24773.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. W3-18-1] gi|145564860|gb|ABP75795.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella putrefaciens CN-32] gi|319426318|gb|ADV54392.1| ribonucleotide reductase [Shewanella putrefaciens 200] Length = 376 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYND---LPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILR 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RATDIAEYYDHL 161 >gi|253574542|ref|ZP_04851883.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846247|gb|EES74254.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 343 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 71/179 (39%), Gaps = 7/179 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S + ++ ++ Y NHW+ E+PM D + L + Sbjct: 13 NKSTRIIGGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMAKDAQQFA---LLDPE 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y+++S Sbjct: 70 EQRTFKINISLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSYVLSS 128 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + ++ E+F ++ P + + + Y P+ + + + ++ + F Sbjct: 129 IVSEQEQKEIFEYWKHDPVLLDRNKFIANIYQNFRDEPTPQSFFEALVADLILEGIFFY 187 >gi|300717619|ref|YP_003742422.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] Length = 376 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K +D+ +V + KY + + W P EV + D ++ GL Sbjct: 10 KNNQLDEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---GL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I ++A Y L Sbjct: 127 IRNIVNDPAIVFDDIVTNEQILSRAKDISGYYDDL 161 >gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS +F +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|15837799|ref|NP_298487.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa 9a5c] gi|28198393|ref|NP_778707.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa Temecula1] gi|9106169|gb|AAF84007.1|AE003954_4 ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa 9a5c] gi|28056463|gb|AAO28356.1| ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa Temecula1] Length = 346 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 8/184 (4%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E R ++N ++ + + Y + Y N W+P EV M+ D + Sbjct: 12 EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 68 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ +G A+ +S I + ++++P +E +H+ ++ Sbjct: 69 ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 127 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRS 189 Y++ S+ ++ +F + R P+I + +Q Y + + + Sbjct: 128 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDDFMREKTAETLLYSLIQSSILEG 187 Query: 190 LRFL 193 + F Sbjct: 188 INFY 191 >gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS +F +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + ES+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLESIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS +F +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|261867684|ref|YP_003255606.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413016|gb|ACX82387.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 376 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 >gi|251792451|ref|YP_003007177.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter aphrophilus NJ8700] gi|315634378|ref|ZP_07889665.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter segnis ATCC 33393] gi|247533844|gb|ACS97090.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter aphrophilus NJ8700] gi|315476968|gb|EFU67713.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter segnis ATCC 33393] Length = 376 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 >gi|52425023|ref|YP_088160.1| ribonucleotide-diphosphate reductase subunit beta [Mannheimia succiniciproducens MBEL55E] gi|52307075|gb|AAU37575.1| NrdF protein [Mannheimia succiniciproducens MBEL55E] Length = 376 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V++ KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVSRYDQQKYETFEKLIEKQLSFFWRPEEVDVAQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ D +F+ I +A Y L S Sbjct: 127 IRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 >gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] Length = 386 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 4/146 (2%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +++VN + M + V + KY W P EV +Q D A + Sbjct: 16 KEKVNTKKQPMFFGQPLGVQRYDTFKYPIFDRLTQQQLGYFWRPEEVSLQKDRADYAQ-- 73 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT ++R + NL + +S+ +A + S PE + F E +HS ++ Sbjct: 74 -LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMNVWEFMEMIHSRSYT 132 Query: 133 YIITSLGLDEGELFNMYREVPSITAK 158 YII ++ + ++F+ + I + Sbjct: 133 YIIKNVYSNPEDVFDTILDDEKIIDR 158 >gi|71901120|ref|ZP_00683227.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|182681036|ref|YP_001829196.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa M23] gi|71729125|gb|EAO31249.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|182631146|gb|ACB91922.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M23] gi|307579504|gb|ADN63473.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa subsp. fastidiosa GB514] Length = 349 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 8/184 (4%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E R ++N ++ + + Y + Y N W+P EV M+ D + Sbjct: 15 EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ +G A+ +S I + ++++P +E +H+ ++ Sbjct: 72 ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 130 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRS 189 Y++ S+ ++ +F + R P+I + +Q Y + + + Sbjct: 131 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDDFMREKTAETLLYSLIQSSILEG 190 Query: 190 LRFL 193 + F Sbjct: 191 INFY 194 >gi|326784150|ref|YP_004324543.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] gi|310004882|gb|ADO99273.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] Length = 395 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 3/150 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + V + KY + W P EV +Q D A ++ Sbjct: 22 VFNKNIVDTTKQHMFFGPPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQ 81 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L +++ + NL + +S+ +A + S PE + E VHS Sbjct: 82 Q---LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSR 138 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +II ++ D +F+ I +A Sbjct: 139 SYTHIIKNIYPDPSVVFDAIITDEKILERA 168 >gi|157961884|ref|YP_001501918.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella pealeana ATCC 700345] gi|157846884|gb|ABV87383.1| Ribonucleoside-diphosphate reductase [Shewanella pealeana ATCC 700345] Length = 376 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +FN E I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFNDIVENEEILK 149 Query: 158 KANWALQYTQTL 169 +A+ Y L Sbjct: 150 RASDIANYYDHL 161 >gi|330433426|gb|AEC18485.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium anatis UMN179] Length = 376 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 3/163 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQHKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +II ++ D +F+ I +A Y L S Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNQEIIKRARDISAYYDDLIRDS 165 >gi|71276518|ref|ZP_00652793.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71900741|ref|ZP_00682863.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|170729741|ref|YP_001775174.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa M12] gi|71162695|gb|EAO12422.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71729511|gb|EAO31620.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|167964534|gb|ACA11544.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12] Length = 349 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 8/184 (4%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E R ++N ++ + + Y + Y N W+P EV M+ D + Sbjct: 15 EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ +G A+ +S I + ++++P +E +H+ ++ Sbjct: 72 ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 130 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRS 189 Y++ S+ ++ +F + R P+I + +Q Y + + + Sbjct: 131 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDDFMREKTAETLLYSLIQSSILEG 190 Query: 190 LRFL 193 + F Sbjct: 191 INFY 194 >gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] Length = 376 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + K+ + + W P E+ + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEIDVSRDRIDFQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y TL Sbjct: 127 IRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTL 161 >gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus flagellatus KT] gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Methylobacillus flagellatus KT] Length = 377 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ GL + E+ + NL + +S+ Sbjct: 33 KYPVFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ +I A Sbjct: 90 RSPNVALLPLVSLPELETWVETWAFSETIHSRSYTHIIRNIVSDPALIFDDIVRNENIVA 149 Query: 158 KANWALQYTQTL 169 +A+ Y L Sbjct: 150 RASDISAYYDDL 161 >gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] Length = 395 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 KY + W P EV +Q D + +K+ LT +++ + NL + +S+ Sbjct: 49 FKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQ 105 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 +A + S PE + E +HS ++ YII ++ D E+F+ + I Sbjct: 106 GRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDDKIM 165 Query: 157 AKAN 160 ++A Sbjct: 166 SRAE 169 >gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] Length = 376 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ + + W P EV + D+ + + LT+ E+ + +NL + + +S+ Sbjct: 31 VKHPVIDKLTEKQLSFFWRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQ 87 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L +S+ ++ +F E +HS ++ +I+ +L ++ E+F+ I Sbjct: 88 GRAPNLTFLPMVSDIALETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIM 147 Query: 157 AKANWALQYTQTL 169 +A QY L Sbjct: 148 KRATAVTQYYDDL 160 >gi|23100542|ref|NP_694009.1| ribonucleotide-diphosphate reductase subunit beta [Oceanobacillus iheyensis HTE831] gi|22778775|dbj|BAC15043.1| ribonucleoside-diphosphate reductase beta subunit [Oceanobacillus iheyensis HTE831] Length = 347 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 7/189 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + N K S + + Y ++ Y N+W EV M D+ Sbjct: 8 KAKTLEPRNPNKSTKLFGGESSGILNWNDIAYPHWYKMYKRLVGNYWQADEVNMSSDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K + L+ +E+ + +G ++ ++ L I + ++P + + A +EAVH Sbjct: 66 -KQFSTLSKEEQDAYLKIIGLLSTLDAPQTRT-ALLISLYATDPSVQSIMAVIAQQEAVH 123 Query: 128 SHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL-QYTQTLSSPSFHYWNKRRRSR 184 + ++ Y+++S+ ++ E F + R + + QY + +PS K Sbjct: 124 NESYSYVLSSVVSWNEQNEAFQLGRTDELLLKRNEQLTEQYNAFVDNPSMENMLKTLVYT 183 Query: 185 ILTRSLRFL 193 L + F Sbjct: 184 SLLEGMFFY 192 >gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] Length = 376 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ LTD E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAADISKYYDDL 161 >gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 380 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + +K L D ER + NL + +S+ Sbjct: 33 KYREFEKLIEKQLSFFWRPEEVDISQDRIDYMTK--LADHERHIFNSNLRYQTLLDSVQG 90 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + S PE ++ AF E +HS ++ +II + D E+F+ I + Sbjct: 91 RSPNVTLLPLASIPELETWIETWAFSETIHSRSYTHIIRGMVDDPSEIFDGIVTDEQIIS 150 Query: 158 KA 159 +A Sbjct: 151 RA 152 >gi|332174213|gb|AEE23467.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 376 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L++ E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQK---LSESEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE + +F E +HS ++ +I+ +L D +F E I Sbjct: 90 RSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFGDPSSIFADIVENEQIKK 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAADISKYYDDL 161 >gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii ATCC 27126] Length = 376 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ LTD E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAADISKYYDDL 161 >gi|88859281|ref|ZP_01133921.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] gi|88818298|gb|EAR28113.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] Length = 376 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D +++ L D E+ + NL + +S+ Sbjct: 33 KHPIFEKLIEKQLSFFWRPEEVDVSKDRVDFEN---LPDHEKHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ +F+ + I Sbjct: 90 RSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNVTKQPELIFDDIVDNDKIKE 149 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 150 RADEVTRYYDDL 161 >gi|325268103|ref|ZP_08134749.1| ribonucleotide-diphosphate reductase beta subunit [Kingella denitrificans ATCC 33394] gi|324980488|gb|EGC16154.1| ribonucleotide-diphosphate reductase beta subunit [Kingella denitrificans ATCC 33394] Length = 384 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV + D + + L + E+ + NL + +S+ Sbjct: 40 KYIAFENLIEKQISFFWRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + +S PE ++ AF E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVGFLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYILA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS +F +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia tasmaniensis Et1/99] gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia tasmaniensis Et1/99] Length = 376 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQPVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I ++A Y L Sbjct: 127 IRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDL 161 >gi|255928974|ref|YP_003097286.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4] gi|255705260|emb|CAR63249.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4] Length = 394 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 3/151 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + + K V + KY + W P EV +Q D A ++ Sbjct: 21 VFNTTQLDSTKQKMFFGPPLGVQRYDKFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQ 80 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D ++ + NL + +S+ +A + S PE + E VHS Sbjct: 81 ---VLNDAQKHIFTSNLKYQILLDSVQGRGPGMAFMPYCSLPELEGAMNIWQTMEMVHSR 137 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKAN 160 ++ +II ++ D ++F+ + I ++A Sbjct: 138 SYTHIIKNVYADPSDVFDKILDDEKILSRAK 168 >gi|148825799|ref|YP_001290552.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittEE] gi|148715959|gb|ABQ98169.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittEE] Length = 376 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFSWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 I ++ D +F+ I +A Y L S Y Sbjct: 127 IRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYG 169 >gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. ANA-3] gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. ANA-3] Length = 391 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 48 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 104 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 105 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILR 164 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 165 RATDIAEYYDHL 176 >gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] Length = 388 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 3/140 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV +Q D + ++S L +++ + NL + +S+ Sbjct: 43 KYPVFDKLTTQMLGYFWRPEEVSLQKDRSDYQS---LRPEQKHIFTSNLKYQILLDSVQG 99 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +A + + PE + F E +HS ++ YII ++ + E+F+ + I Sbjct: 100 RGPGMAFAPYCALPELEGAMNVWQFMEMIHSRSYTYIIKNVYPNPAEVFDTILDDEKILK 159 Query: 158 KANWALQYTQTLSSPSFHYW 177 +AN + + Y Sbjct: 160 RANSVTASYDDFINDAQEYG 179 >gi|91793308|ref|YP_562959.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella denitrificans OS217] gi|91715310|gb|ABE55236.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella denitrificans OS217] Length = 376 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDKIDF---TALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNDEILK 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAGDIAKYYDDL 161 >gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-4] gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-7] gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-4] gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-7] Length = 376 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILR 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RATDIAEYYDHL 161 >gi|319638203|ref|ZP_07992966.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria mucosa C102] gi|317400476|gb|EFV81134.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria mucosa C102] Length = 384 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|241760495|ref|ZP_04758588.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria flavescens SK114] gi|241318999|gb|EER55501.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria flavescens SK114] Length = 377 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] Length = 388 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 3/150 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + K + V + KY + W P EV +Q D + ++ Sbjct: 15 VFNKTKVDTKNQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQ 74 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + L++ ++ + NL + +S+ +A + S PE + F E +HS Sbjct: 75 T---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSR 131 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ YII ++ + G++F+ + ++ ++A Sbjct: 132 SYTYIIKNVYSNPGDVFDTILDDENVMSRA 161 >gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae Ech1591] gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591] Length = 376 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ GL + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A + L Sbjct: 150 RAKDISGFYDEL 161 >gi|259907948|ref|YP_002648304.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia pyrifoliae Ep1/96] gi|224963570|emb|CAX55060.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia pyrifoliae Ep1/96] gi|283477829|emb|CAY73745.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia pyrifoliae DSM 12163] gi|310768143|gb|ADP13093.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia sp. Ejp617] Length = 376 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D ++ L Sbjct: 10 KNDQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I ++A Y L Sbjct: 127 IRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDL 161 >gi|225075859|ref|ZP_03719058.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens NRL30031/H210] gi|224952805|gb|EEG34014.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens NRL30031/H210] Length = 388 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 44 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 100 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 101 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 160 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 161 RAEDIACYYDDL 172 >gi|109898789|ref|YP_662044.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas atlantica T6c] gi|109701070|gb|ABG40990.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Pseudoalteromonas atlantica T6c] Length = 376 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L++ E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQK---LSESEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE + +F E +HS ++ +I+ +L D +F+ E I Sbjct: 90 RSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFGDPSSIFSDIVENEQIKK 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAADISKYYDDL 161 >gi|284799957|ref|ZP_05985309.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria subflava NJ9703] gi|284796454|gb|EFC51801.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria subflava NJ9703] Length = 377 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|58532963|ref|YP_195186.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] gi|58331430|emb|CAF34216.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] Length = 394 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 4/165 (2%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + +VN + M V + KY + W P EV +Q D A ++ Sbjct: 24 KNKVNTTKQPMFFGAPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQQ-- 81 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L +++ + NL + +S+ +A + S PE + E VHS ++ Sbjct: 82 -LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSRSYT 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 +II ++ D ++F+ I +A + + + Sbjct: 141 HIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAAQEWG 185 >gi|294788520|ref|ZP_06753762.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella muelleri ATCC 29453] gi|294483397|gb|EFG31082.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella muelleri ATCC 29453] Length = 384 Score = 95.3 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQISFFWRPEEVDLSRDRMDYAK---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVALLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYNDL 168 >gi|269213593|ref|ZP_05982340.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria cinerea ATCC 14685] gi|269146056|gb|EEZ72474.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria cinerea ATCC 14685] Length = 377 Score = 95.3 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I A Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEYIIA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|294669615|ref|ZP_06734682.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308528|gb|EFE49771.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 296 Score = 95.3 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|237808189|ref|YP_002892629.1| ribonucleotide-diphosphate reductase subunit beta [Tolumonas auensis DSM 9187] gi|237500450|gb|ACQ93043.1| ribonucleotide reductase [Tolumonas auensis DSM 9187] Length = 377 Score = 95.3 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV + D +++ L E+ + NL + +S+ Sbjct: 33 KYEVFERLIEKQLSFFWRPEEVDVSQDRIDYQT---LPPHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLVSLPELETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVVNEQIIK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIAGYYDEL 161 >gi|119774862|ref|YP_927602.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella amazonensis SB2B] gi|119767362|gb|ABL99932.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella amazonensis SB2B] Length = 391 Score = 95.3 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y + + W P EV + D + L D ER + NL + +S+ Sbjct: 48 RYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---GKLPDHERHIFISNLKYQTLLDSIQG 104 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 105 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSSVFDDIVVNEEILK 164 Query: 158 KA 159 +A Sbjct: 165 RA 166 >gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella ictaluri 93-146] gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Edwardsiella ictaluri 93-146] Length = 376 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 3/160 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + K+ + + W P EV + D ++ Sbjct: 5 IFSQKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS Sbjct: 65 ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +II ++ D +F+ I +A Y L Sbjct: 122 SYTHIIRNIVTDPSLVFDDIVSNEEILKRARDISAYYDDL 161 >gi|238761950|ref|ZP_04622923.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia kristensenii ATCC 33638] gi|238699678|gb|EEP92422.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia kristensenii ATCC 33638] Length = 400 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 57 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 113 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 114 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 173 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 174 RAKDISGYYDDL 185 >gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella tarda FL6-60] Length = 376 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 3/160 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + K+ + + W P EV + D ++ Sbjct: 5 IFSQKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS Sbjct: 65 ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +II ++ D +F+ I +A Y L Sbjct: 122 SYTHIIRNIVTDPALVFDDIVSNEEILKRARDISAYYDDL 161 >gi|270262779|ref|ZP_06191050.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia odorifera 4Rx13] gi|270043463|gb|EFA16556.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia odorifera 4Rx13] Length = 359 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 16 KHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 73 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILK 132 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 133 RAKDISGYYDDL 144 >gi|317492553|ref|ZP_07950980.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919303|gb|EFV40635.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 376 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISGYYDDL 161 >gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01] Length = 381 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 4/163 (2%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 V++ + M + + Q L KY + + W P EV +Q D + +++ L Sbjct: 14 VDLKQQPMFFGQPLGIQQYLDYKYPLFEKLTQTQLGFFWRPEEVSLQKDRSDYQN---LR 70 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +++ + NL + +S+ LA + S PE + F E +HS ++ +II Sbjct: 71 PEQKHIFTSNLKYQVMLDSVQGRGPSLAFLPYCSLPELESCMEVWGFMEMIHSRSYTHII 130 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 +L E+F+ I +A + + + + HY N Sbjct: 131 KNLYPQPEEVFSTILSDSKIMERAKSVTESYDSFINAAHHYDN 173 >gi|307129979|ref|YP_003881995.1| Ribonucleotide reductase of class Ia (aerobic), subunit beta [Dickeya dadantii 3937] gi|306527508|gb|ADM97438.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Dickeya dadantii 3937] Length = 376 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A + L Sbjct: 150 RAKDISGFYDEL 161 >gi|326560494|gb|EGE10876.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 7169] gi|326570427|gb|EGE20467.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC8] gi|326575699|gb|EGE25622.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis CO72] gi|326577166|gb|EGE27060.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis O35E] Length = 376 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ +F E +HS ++ +II ++ D ++F + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILE 149 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 150 RASDIAKYYDDL 161 >gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia pestis KIM 10] gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Microtus str. 91001] Length = 391 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 48 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 104 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 105 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 164 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 165 RAKDISAYYDDL 176 >gi|298368555|ref|ZP_06979873.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282558|gb|EFI24045.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 384 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|61680624|pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli gi|61680625|pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli Length = 375 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS + +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSHTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|296113118|ref|YP_003627056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella catarrhalis RH4] gi|295920812|gb|ADG61163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella catarrhalis RH4] Length = 380 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + L+ E+ + NL + +S+ Sbjct: 37 KHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQG 93 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ +F E +HS ++ +II ++ D ++F + I Sbjct: 94 RSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILE 153 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 154 RASDIAKYYDDL 165 >gi|212635281|ref|YP_002311806.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella piezotolerans WP3] gi|212556765|gb|ACJ29219.1| Ribonucleoside-diphosphate reductase, beta subunit [Shewanella piezotolerans WP3] Length = 376 Score = 94.9 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + S L E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDYAS---LPAHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RATDIAAYYDKL 161 >gi|157371509|ref|YP_001479498.1| ribonucleotide-diphosphate reductase subunit beta [Serratia proteamaculans 568] gi|157323273|gb|ABV42370.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568] Length = 376 Score = 94.9 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISGYYDDL 161 >gi|293392273|ref|ZP_06636607.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952807|gb|EFE02926.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 376 Score = 94.9 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++ +I Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYTHI 126 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 I ++ + +F+ I +A Y L S Sbjct: 127 IRNIVNNPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 >gi|326560111|gb|EGE10501.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 46P47B1] gi|326564174|gb|EGE14410.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 12P80B1] gi|326573404|gb|EGE23372.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 101P30B1] Length = 376 Score = 94.9 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ +F E +HS ++ +II ++ D ++F + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILE 149 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 150 RASDIAKYYDDL 161 >gi|161617990|ref|YP_001595470.1| ribonucleotide reductase beta subunit [Enterobacteria phage phiEcoM-GJ1] gi|150416409|gb|ABR68787.1| ribonucleotide reductase beta subunit [Enterobacteria phage phiEcoM-GJ1] Length = 372 Score = 94.9 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KYG + + W P EV + D ++ Sbjct: 6 FSQTKNNQLLEPMFFGQNVNVARYDQQKYGIFEKLIEKQLSFFWRPEEVDVSQDRIDYQK 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L +E+ + NL + +S+ + +S PE ++ +F E +HS + Sbjct: 66 ---LPANEQHIFTSNLRYQILLDSIQGRGPNTVLLPIVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ I A+A QY L Sbjct: 123 YTHIIRNIVTDPSIIFDEIVTNEHIKARAIGISQYYDEL 161 >gi|255065945|ref|ZP_05317800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca ATCC 29256] gi|255049856|gb|EET45320.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca ATCC 29256] Length = 377 Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAEDIACYYDDL 161 >gi|261364564|ref|ZP_05977447.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria mucosa ATCC 25996] gi|288567131|gb|EFC88691.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria mucosa ATCC 25996] Length = 384 Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|292488819|ref|YP_003531706.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia amylovora CFBP1430] gi|292899970|ref|YP_003539339.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia amylovora ATCC 49946] gi|291199818|emb|CBJ46941.1| ribonucleoside-diphosphate reductase 1 beta subunit [Erwinia amylovora ATCC 49946] gi|291554253|emb|CBA21550.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia amylovora CFBP1430] gi|312172977|emb|CBX81232.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia amylovora ATCC BAA-2158] Length = 376 Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I + Sbjct: 90 RSPNVALLPLISIPELETWIETWAFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILS 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISGYYDDL 161 >gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Antiqua] gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Nepal516] gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis FV-1] gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis CO92] gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pseudotuberculosis IP 32953] gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Nepal516] gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Antiqua] gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CO92] gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Pestoides F] gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis YPIII] gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+] gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D106004] gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D182038] gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 376 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|271499642|ref|YP_003332667.1| ribonucleotide reductase [Dickeya dadantii Ech586] gi|270343197|gb|ACZ75962.1| ribonucleotide reductase [Dickeya dadantii Ech586] Length = 376 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A + L Sbjct: 150 RAKDISGFYDEL 161 >gi|257454213|ref|ZP_05619483.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter aerosaccus SK60] gi|257448386|gb|EEV23359.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter aerosaccus SK60] Length = 377 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + + L+ E+ + NL + +S+ Sbjct: 33 KFPVFEQLIEKQLSFFWRPEEIDVSKDRLDF---SNLSVHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + +S PE ++ +F E +HS ++ +II ++ D ++F+ + P I Sbjct: 90 RSPNAVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNVVNDPSKVFDDIVDNPFILE 149 Query: 158 KANWALQYTQTL 169 +A ++ L Sbjct: 150 RATGIAKFYDEL 161 >gi|225023977|ref|ZP_03713169.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC 23834] gi|224943002|gb|EEG24211.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC 23834] Length = 384 Score = 94.5 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + EK + + +V + KY + + W P E+ + D + + Sbjct: 13 FSKEKNDVLKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN 72 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 73 ---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRS 129 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ + I A+A Y L Sbjct: 130 YTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDL 168 >gi|326565416|gb|EGE15593.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 103P14B1] Length = 376 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ +F E +HS ++ +II ++ D ++F + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILE 149 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 150 RASDIAKYYDDL 161 >gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] Length = 376 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp. HTCC2999] Length = 376 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ GL+D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQISFFWRPEEVDVSKDRMDFQ---GLSDAEKHIFISNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +I+ +L D +F E I Sbjct: 90 RSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFTDPSNIFEDIVENEEIKR 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAADISKYYDDL 161 >gi|94676795|ref|YP_588829.1| ribonucleotide-diphosphate reductase subunit beta [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219945|gb|ABF14104.1| ribonucleoside-diphosphate reductase, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 376 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +K + + L +V + KY + + W P EV + D ++ Sbjct: 6 FSPKKNNQLLEPMFLGQSVNVVRFDQQKYESFEKLIEKQLSFFWRPEEVDISLDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L E+ + N+ + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPQHEKHIFISNIKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ I +A + L Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNTEILKRAKDIAAFYDDL 161 >gi|304445703|pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli gi|304445704|pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli Length = 375 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS + +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSXTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|145298925|ref|YP_001141766.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas salmonicida subsp. salmonicida A449] gi|142851697|gb|ABO90018.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 377 Score = 94.1 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + W P EV + D ++ L E+ + NL + +S+ Sbjct: 33 KHEVFERLIEKQLSFFWRPEEVDVSHDRIDYQ---ALPPHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ + G++F+ I Sbjct: 90 RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNNPGQVFDDIVTNEQILK 149 Query: 158 KANWALQYTQTLSSPS 173 +A + L + Sbjct: 150 RAGSISCFYDDLIEAT 165 >gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] Length = 376 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|238794995|ref|ZP_04638591.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia intermedia ATCC 29909] gi|238725698|gb|EEQ17256.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia intermedia ATCC 29909] Length = 376 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|332162349|ref|YP_004298926.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606422|emb|CBY27920.1| ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325666579|gb|ADZ43223.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864218|emb|CBX74276.1| ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia enterocolitica W22703] Length = 376 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|260772919|ref|ZP_05881835.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio metschnikovii CIP 69.14] gi|260612058|gb|EEX37261.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio metschnikovii CIP 69.14] Length = 377 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 6 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIINDPAVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] Length = 378 Score = 94.1 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 35 KHRIFEDLIEKQLSFFWRPEEVDVTQDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 91 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D G +F+ I Sbjct: 92 RSPNVALLPLVSLPELETWIETWSFYETIHSRSYTHIIRNIVNDPGVVFDDIVVNEEIQK 151 Query: 158 KANWALQYTQTL 169 +A+ QY L Sbjct: 152 RASDISQYYDDL 163 >gi|123441721|ref|YP_001005705.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088682|emb|CAL11484.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 376 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|238760194|ref|ZP_04621340.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia aldovae ATCC 35236] gi|238701573|gb|EEP94144.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia aldovae ATCC 35236] Length = 376 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISAYYDDL 161 >gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella oneidensis MR-1] gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella oneidensis MR-1] Length = 376 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNHEILR 149 Query: 158 KANWALQYTQTL 169 +A ++ L Sbjct: 150 RATDIAEFYDHL 161 >gi|6782388|emb|CAB70099.1| ribonucleotide reductase R2 subunit [Plasmodium yoelii] Length = 111 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPS 154 N+ R + E +++ Q E +HS T+ +I + DE E LF+ +P+ Sbjct: 1 ENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPA 60 Query: 155 ITAKANWALQYTQTLSS 171 I KA WA ++ +S Sbjct: 61 IKNKALWAAKWINDTNS 77 >gi|330829606|ref|YP_004392558.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like protein [Aeromonas veronii B565] gi|328804742|gb|AEB49941.1| Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Aeromonas veronii B565] Length = 393 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + W P EV + D ++ L E+ + NL + +S+ Sbjct: 49 KHEVFERLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPPHEQHIFISNLKYQTLLDSIQG 105 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ ++F+ I Sbjct: 106 RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILK 165 Query: 158 KANWALQYTQTLSSPS 173 +A + L + Sbjct: 166 RAGSISHFYDDLIEAT 181 >gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] Length = 376 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 33 KHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSVVFDDIVSNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RARDISVYYDDL 161 >gi|217973230|ref|YP_002357981.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS223] gi|304408853|ref|ZP_07390474.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183] gi|307302856|ref|ZP_07582611.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175] gi|217498365|gb|ACK46558.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS223] gi|304352674|gb|EFM17071.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183] gi|306913216|gb|EFN43638.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175] gi|315267707|gb|ADT94560.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS678] Length = 376 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RATDIAAYYDHL 161 >gi|153000811|ref|YP_001366492.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS185] gi|160875520|ref|YP_001554836.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS195] gi|151365429|gb|ABS08429.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS185] gi|160861042|gb|ABX49576.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS195] Length = 386 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 43 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 99 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 100 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 159 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 160 RATDIAAYYDHL 171 >gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] Length = 377 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 6 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 161 >gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] Length = 381 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 10 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 67 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 68 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 126 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 127 YTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 165 >gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] Length = 381 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 10 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 67 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 68 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 126 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 127 YTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 165 >gi|242238482|ref|YP_002986663.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya dadantii Ech703] gi|242130539|gb|ACS84841.1| ribonucleotide reductase [Dickeya dadantii Ech703] Length = 376 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149 Query: 158 KA 159 +A Sbjct: 150 RA 151 >gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] Length = 377 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 6 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 161 >gi|76875271|emb|CAI86492.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pseudoalteromonas haloplanktis TAC125] Length = 359 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 16 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 73 RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 132 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 133 RADAVTKYYDDL 144 >gi|126174279|ref|YP_001050428.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS155] gi|125997484|gb|ABN61559.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella baltica OS155] Length = 376 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RATDIAAYYDHL 161 >gi|284009345|emb|CBA76525.1| ribonucleoside-diphosphate reductase 1, beta subunit [Arsenophonus nasoniae] Length = 378 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P E+ + D ++ Sbjct: 8 FSQTKNDQLQEPMFFGQPVNVARYDQQKYPIFEQLIEKQLSFFWRPEEIDVSRDRIDYQ- 66 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 67 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRS 124 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ + +F+ I +A Y L Sbjct: 125 YTHIIRNIVNEPSIIFDDIVTNNEILKRAKDISAYYDDL 163 >gi|238751211|ref|ZP_04612705.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia rohdei ATCC 43380] gi|238710485|gb|EEQ02709.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia rohdei ATCC 43380] Length = 399 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + L +V + K+ + + W P E+ + D ++ L Sbjct: 33 KNNQLLEPMFLGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDYQ---AL 89 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +I Sbjct: 90 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHI 149 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 I ++ D +F+ I +A Y L Sbjct: 150 IRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDL 184 >gi|238021387|ref|ZP_04601813.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147] gi|237868367|gb|EEP69373.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147] Length = 384 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + + L + E+ + NL + +S+ Sbjct: 40 KYETFEKLIEKQISFFWRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVGLLPLVSLPELETWIETWSFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49] gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49] Length = 386 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P E+ + D + + D E+ NL + +S+ Sbjct: 31 RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 87 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A +S+P +L F E +HS ++ +I+ + +D F+ + P+I Sbjct: 88 RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 147 Query: 158 KANWALQYTQTL---------SSPSFHYWNKRRRSRILTRSLRF 192 +A +Y + + YW +R L + RF Sbjct: 148 RAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQTALDDARRF 191 >gi|71065825|ref|YP_264552.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter arcticus 273-4] gi|71038810|gb|AAZ19118.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter arcticus 273-4] Length = 377 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEVDVSRDRMDY---GNLSSHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ F E +HS ++ +II ++ D +F+ + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILG 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAADIAKYYDDL 161 >gi|238753722|ref|ZP_04615083.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia ruckeri ATCC 29473] gi|238707958|gb|EEQ00315.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia ruckeri ATCC 29473] Length = 376 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W P E+ + D + N L + E+ + NL + +S+ + +A+ Sbjct: 43 KQLSFFWRPEEIDVSRDRIDY---NALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPL 99 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 +S PE ++ +F E +HS ++ +II ++ D +F+ I +A Y Sbjct: 100 ISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISSYYD 159 Query: 168 TL 169 L Sbjct: 160 DL 161 >gi|262402402|ref|ZP_06078963.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC586] gi|262351184|gb|EEZ00317.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC586] Length = 360 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 73 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILK 132 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 133 RAKDIAHYYDDL 144 >gi|162139926|ref|YP_339935.2| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 90 RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 149 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 150 RADAVTKYYDDL 161 >gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 377 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D G +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDL 161 >gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae MJ-1236] gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae MJ-1236] Length = 381 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 10 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 67 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 68 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 126 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 127 YTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 165 >gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O395] gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] Length = 389 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 18 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 75 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 76 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 134 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 135 YTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 173 >gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio cholerae LMA3894-4] Length = 377 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 6 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDL 161 >gi|332035983|gb|EGI72462.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 376 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 90 RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 149 Query: 158 KANWALQYTQTL 169 +A+ +Y L Sbjct: 150 RADAVTKYYDDL 161 >gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] Length = 376 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ + + W P EV + D + N L++ E+ + +NL + + +S+ Sbjct: 31 VKHPAIDKLTEKQLSFFWRPEEVDLSKDAIDY---NQLSEAEQHVFTQNLKYQSLLDSVQ 87 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L +S+ ++ +F E +HS ++ +I+ +L +D +F+ I Sbjct: 88 GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIM 147 Query: 157 AKANWALQYTQTL 169 A+A QY L Sbjct: 148 ARATSVTQYYDNL 160 >gi|93005945|ref|YP_580382.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter cryohalolentis K5] gi|92393623|gb|ABE74898.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter cryohalolentis K5] Length = 377 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEVDVSKDRMDF---GNLSSHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ F E +HS ++ +II ++ D +F+ + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILG 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAADIAKYYDDL 161 >gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] Length = 360 Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 73 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 132 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 133 RAKDIAHYYDDL 144 >gi|56460472|ref|YP_155753.1| ribonucleotide-diphosphate reductase subunit beta [Idiomarina loihiensis L2TR] gi|56179482|gb|AAV82204.1| Ribonucleotide reductase, beta subunit [Idiomarina loihiensis L2TR] Length = 377 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N LT E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQISFFWRPEEIDVSRDRIDF---NKLTASEKHVFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFSDPSEVFEDIVINEQIKI 149 Query: 158 KANWALQYTQTL 169 +AN +Y L Sbjct: 150 RANDISKYYDDL 161 >gi|254796877|ref|YP_003081714.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia risticii str. Illinois] gi|254590113|gb|ACT69475.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia risticii str. Illinois] Length = 286 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 5/133 (3%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M DD+ W K T E+ ++ + FF ++ V + + PE L Sbjct: 1 MADDVQDWHHKICST--EKNLLTQIFRFFTQADVEVHDCYMRHYAGVFKPPEVCMMLTAF 58 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKR 180 A E +H + +++ ++G+ E E + + + + K + + + SP+ Sbjct: 59 ANMETIHIAAYAHLLDTVGMPETE-YLAFTKYRQMKEKCEYLKAF--KMDSPTEIAKTLA 115 Query: 181 RRSRILTRSLRFL 193 F Sbjct: 116 VYGAFTEGLQLFA 128 >gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] Length = 388 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 12/164 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P E+ + D + + D E+ NL + +S+ Sbjct: 33 RHQVFEELIEKSLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A +S+P +L F E +HS ++ +I+ + +D F+ + P+I Sbjct: 90 RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 149 Query: 158 KANWALQYTQTL---------SSPSFHYWNKRRRSRILTRSLRF 192 +A +Y + + YW +R L + RF Sbjct: 150 RAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQTALDDARRF 193 >gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] Length = 377 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D G +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAKDISGYYDDL 161 >gi|320538993|ref|ZP_08038668.1| putative ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] gi|320030926|gb|EFW12930.1| putative ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] Length = 376 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KHEIFEKLIEKQLSFFWRPEEVDVSCDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISGYYDDL 161 >gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio salmonicida LFI1238] gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio salmonicida LFI1238] Length = 377 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 EK + + L +V + K+ + + W P EV + D + Sbjct: 6 FRQEKNDQLKEPMFLGNSVNVARYDQQKFQVFEKLIEKQLSFFWRPEEVDVSGDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +I+ ++ D +F+ E I +A Y L Sbjct: 123 YTHIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNL 161 >gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] Length = 377 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + N LT E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQISFFWRPEEVDVSRDRVDF---NKLTASEKHVFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVINDQIKL 149 Query: 158 KANWALQYTQTL 169 +AN +Y L Sbjct: 150 RANDISRYYDDL 161 >gi|27904669|ref|NP_777795.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38605263|sp|Q89AS5|RIR2_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|27904066|gb|AAO26900.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 376 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D +++ L E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDLSRDYIDFQN---LPQHEKHIFVSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ +F+ + +I Sbjct: 90 RSPNIALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIINTPSLIFDDIIDNKNIAN 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAKDIAKYYDDL 161 >gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] Length = 377 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +K + + L +V + K+ + + W P EV + D + Sbjct: 6 FSQKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D G +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEEILKRAKDIAFYYDDL 161 >gi|238788616|ref|ZP_04632408.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia frederiksenii ATCC 33641] gi|238723211|gb|EEQ14859.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia frederiksenii ATCC 33641] Length = 383 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D +++ L + E+ + NL + +S+ Sbjct: 40 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDYQN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 97 RSPNIALLPIISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAKDISAYYDDL 168 >gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] Length = 347 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 7/196 (3%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M+N N S + L Y ++ Y N+W EV Sbjct: 1 MSNALLEKAKTLDPVHPNKATALFGGKSSGILNWNDLAYPHWYKTYKRLLGNYWQSDEVN 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ K L++ E+ + + A+ +S I+LA + ++P + L Sbjct: 61 MSTDV---KQFPLLSEKEQETFLKIISLLATLDSSQTRTILLA-SLYATDPSIQSILAVI 116 Query: 121 AFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL-QYTQTLSSPSFHYW 177 A +EAVH+ ++ YI++S+ + E F + R+ P + + + QY P Sbjct: 117 AQQEAVHNESYSYILSSVVSLDKQNEAFEIGRKDPVLLKRNKKLMEQYNAFAQQPDVEDI 176 Query: 178 NKRRRSRILTRSLRFL 193 K L L F Sbjct: 177 VKTLVYSTLLEGLFFY 192 >gi|326536452|ref|YP_004300883.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit [Aeromonas phage 65] gi|312262798|gb|ADQ53054.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit [Aeromonas phage 65] Length = 376 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 63/163 (38%), Gaps = 4/163 (2%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S + + + +V + +K ++ + W PTE+ M D Sbjct: 3 STVFNTNIVDHTNQHMFFGEEPNVQRFDTMKTRVFYDLMDRQLSFFWRPTEIDMSKDSIQ 62 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE-AV 126 + L+D + + +NL + +S+ L + H+S+ ++ E + Sbjct: 63 FHQ---LSDHAKHVYTQNLFVQSLLDSIQGRGPNLVLLPHVSDVTLENFITAWTMVEGTI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 HS ++ +++ ++ + E+F+ P I +A +Y + Sbjct: 120 HSDSYTHMVRAVYPNPTEVFDQVMLTPEIMKRAEAITKYYDAV 162 >gi|262274472|ref|ZP_06052283.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Grimontia hollisae CIP 101886] gi|262221035|gb|EEY72349.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Grimontia hollisae CIP 101886] Length = 360 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + +D + N L + E+ + NL + +S+ Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSNDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ I Sbjct: 73 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVTNPSLVFDDIVVNEHIIK 132 Query: 158 KANWALQYTQTL 169 +AN Y L Sbjct: 133 RANDIAGYYDDL 144 >gi|78486104|ref|YP_392029.1| ribonucleotide-diphosphate reductase subunit beta [Thiomicrospira crunogena XCL-2] gi|78364390|gb|ABB42355.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Thiomicrospira crunogena XCL-2] Length = 377 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 59/145 (40%), Gaps = 3/145 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 39 KHPIFEKLIEKQLSFFWRPEEIDLSSDRGEYAN---LPEHEKHVFISNLKYQTLLDSVQG 95 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 96 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVSDPSLVFDDIVANEEIVK 155 Query: 158 KANWALQYTQTLSSPSFHYWNKRRR 182 +A Y L + + + + Sbjct: 156 RAISVTVYYDKLINLTNRMYAEEID 180 >gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 377 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDF-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D G +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDL 161 >gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 342 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 75/176 (42%), Gaps = 7/176 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N ++ + S + ++ ++ Y NHW+P+E+PM D + + L + Sbjct: 13 NKSNRIIEGESSGILNWDDIRLPQMYKLYRVLIGNHWIPSEIPMNVDKSDF---PMLPTN 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 + KR +G A +S+ V + +L++ +E +H+ ++ Y+++S Sbjct: 70 TQNTFKRIIGLLAVLDSMQTM-FVGDVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSS 128 Query: 138 LG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSL 190 L ++ E+F ++ P + + + Y SPS + K + ++ + Sbjct: 129 LVSYTEQLEIFEYWKNDPILLKRNLFIRDAYQAFRESPSPETFFKALVADMVLEGI 184 >gi|117619492|ref|YP_856857.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560899|gb|ABK37847.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 377 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + W P EV + D ++ L E+ + NL + +S+ Sbjct: 33 KHEVFERLIEKQLSFFWRPEEVDVSHDRIDFQ---ALPPHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ ++F+ I Sbjct: 90 RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILK 149 Query: 158 KANWALQYTQTLSSPS 173 +A + L + Sbjct: 150 RAGSISHFYDDLIEAT 165 >gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio sp. Ex25] gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. Ex25] gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] Length = 377 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|148653376|ref|YP_001280469.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter sp. PRwf-1] gi|148572460|gb|ABQ94519.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter sp. PRwf-1] Length = 377 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY---GNLSTHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMENEHILQ 149 Query: 158 KANWALQYTQTL 169 +A+ Y L Sbjct: 150 RASDIAYYYDDL 161 >gi|260768282|ref|ZP_05877216.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio furnissii CIP 102972] gi|260616312|gb|EEX41497.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio furnissii CIP 102972] gi|315179989|gb|ADT86903.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio furnissii NCTC 11218] Length = 377 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDYAK---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEHIIK 149 Query: 158 KANWALQYTQTL 169 +A + L Sbjct: 150 RAKDIAHFYDDL 161 >gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 377 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +K + + L +V + K+ + + W P EV + D + Sbjct: 6 FSQQKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D G +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPGVVFDDIVENEEILKRAKDIAFYYDDL 161 >gi|315126539|ref|YP_004068542.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas sp. SM9913] gi|315015053|gb|ADT68391.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas sp. SM9913] Length = 376 Score = 91.8 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 90 RSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 149 Query: 158 KANWALQYTQTL 169 +A+ Y L Sbjct: 150 RADAVTTYYDDL 161 >gi|152991848|ref|YP_001357569.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] gi|151423709|dbj|BAF71212.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] Length = 337 Score = 91.8 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 70/183 (38%), Gaps = 6/183 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +D+K + + KY W Y N W P+EV + K+ Sbjct: 7 YNPQGEEILDEKIYGGSPTGFVDFNRSKYRWDSNIYDLMNANTWFPSEVNTSTEK---KN 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LTD+E+ + K + ++S + R +N + + Q +E HS + Sbjct: 64 FEALTDNEQSIYKMTFAQLSFNDSAQEEYLSD-FRRLANNRLVKSVISLQIMQEVNHSKS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 + ++ + G + E+FN+Y+ ++ K A Q+ + + S + + Sbjct: 123 YAVLLDACG-NSEEVFNLYKYDAALNKKNLQVAEQFAKYIDGGSADKMLLSAMASVNLEG 181 Query: 190 LRF 192 + F Sbjct: 182 IYF 184 >gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus CMCP6] gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus YJ016] gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta [Vibrio vulnificus MO6-24/O] gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus CMCP6] gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016] gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus MO6-24/O] Length = 377 Score = 91.8 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] Length = 337 Score = 91.8 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 7/174 (4%) Query: 21 DKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+++ +Y W+ Y N W P+EV ++ + + LTD+E+ Sbjct: 16 DEKIYGGNPTGFVDFNRPRYKWSVNLYDLMNANTWFPSEVNTANEKKHF---DLLTDNEQ 72 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + K + ++S + R +N + L Q +E HS ++ ++ + G Sbjct: 73 AIYKLTFAQLSFNDSAQEEYLSD-FRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG 131 Query: 140 LDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + E+F++Y+ ++ K A Q+ + + S + + + F Sbjct: 132 -NSDEVFDLYKHDAALNRKNQRIANQFARYIDGNSAEEMLLSAMASVNLEGIYF 184 >gi|119472403|ref|ZP_01614521.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales bacterium TW-7] gi|119444925|gb|EAW26223.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales bacterium TW-7] Length = 376 Score = 91.4 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPEHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 90 RSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIRNVTQSPELIFDDIVSNDKISE 149 Query: 158 KANWALQYTQTL 169 +A+ Y L Sbjct: 150 RADAVTTYYDDL 161 >gi|293411957|ref|ZP_06654682.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|309797907|ref|ZP_07692288.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|220980068|emb|CAP72260.1| Ribonucleoside-diphosphate reductase subunit beta [Escherichia coli LF82] gi|291469512|gb|EFF12001.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|308118515|gb|EFO55777.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|323934216|gb|EGB30640.1| ribonucleotide reductase [Escherichia coli E1520] Length = 380 Score = 91.4 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + +K L D ER + NL + +S+ Sbjct: 33 KYRDFEKLIERQLSFFWRPEEVDISSDRIDFNTK--LRDHERHIFLSNLRYQTLLDSVQG 90 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + +S PE ++ +F E +HS ++ +II + D +F+ I Sbjct: 91 RSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIIN 150 Query: 158 KA 159 +A Sbjct: 151 RA 152 >gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] Length = 377 Score = 91.4 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D G +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDL 161 >gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 377 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D G +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDL 161 >gi|59711808|ref|YP_204584.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio fischeri ES114] gi|197336251|ref|YP_002156001.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri MJ11] gi|59479909|gb|AAW85696.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Vibrio fischeri ES114] gi|197317741|gb|ACH67188.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri MJ11] Length = 377 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 EK + + L +V + K+ + + W P EV + D + Sbjct: 6 FRQEKNDQLKEPMFLGNSVNVARYDQQKFQIFEKLIEKQLSFFWRPEEVDVSGDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ + +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNNPSVIFDDIVENEEILKRAKDIAHYYDNL 161 >gi|45478633|ref|NP_995489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|52788092|ref|YP_093920.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis] gi|145597234|ref|YP_001154698.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|162417832|ref|YP_001604568.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|229896974|ref|ZP_04512133.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia pestis Pestoides A] gi|45357286|gb|AAS58680.1| putative ribonucleoside-diphosphate reductase beta subunit [Yersinia pestis biovar Microtus str. 91001] gi|52538021|emb|CAG27446.1| putative ribonucleoside-diphosphate reductase beta subunit [Yersinia pestis] gi|145213002|gb|ABP42407.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Pestoides F] gi|162350804|gb|ABX84753.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|229700010|gb|EEO88050.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia pestis Pestoides A] Length = 380 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + +K L + ER + NL + +S+ Sbjct: 33 KYRDFEKLIEKQLSFFWRPEEVDITTDRIDFNTK--LQEHERHIFLSNLRYQTLLDSVQG 90 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + +S PE ++ +F E +HS ++ +II + D +F+ I + Sbjct: 91 RSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIIS 150 Query: 158 KA 159 +A Sbjct: 151 RA 152 >gi|90409249|ref|ZP_01217354.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp. CNPT3] gi|90309647|gb|EAS37827.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp. CNPT3] Length = 381 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + L E+ + NL + +S+ Sbjct: 33 KFEVFEKLIEKQLSFFWRPEEIDVSRDRIDF---MNLPSHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNMALLPIVSLPELETWIETWSFSETIHSRSYTHILRNLFTDPSEVFEDIVTNVEIQK 149 Query: 158 KANWALQYTQTL 169 +A+ QY L Sbjct: 150 RASDIAQYYDAL 161 >gi|18466786|ref|NP_569593.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506102|emb|CAD09988.1| putative ribonucleoside-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 380 Score = 91.4 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + +K L + ER + NL + +S+ Sbjct: 33 KYRDFEKLIEKQLSFFWRPEEVDITTDRIDFNTK--LQEHERHIFLSNLRYQTLLDSVQG 90 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + +S PE ++ +F E +HS ++ +II + D +F+ I + Sbjct: 91 RSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIIS 150 Query: 158 KA 159 +A Sbjct: 151 RA 152 >gi|114563305|ref|YP_750818.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella frigidimarina NCIMB 400] gi|114334598|gb|ABI71980.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella frigidimarina NCIMB 400] Length = 376 Score = 91.1 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---GNLPEHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ + +F+ + I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSLVFDDIVQNDEILK 149 Query: 158 KANWALQYTQTLSSPS 173 +A Y L + + Sbjct: 150 RAGDIAAYYDDLINLT 165 >gi|329119976|ref|ZP_08248648.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327463889|gb|EGF10203.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 384 Score = 91.1 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KFEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 157 RAEDIACYYDDL 168 >gi|237747538|ref|ZP_04578018.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter formigenes OXCC13] gi|229378900|gb|EEO28991.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter formigenes OXCC13] Length = 376 Score = 91.1 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KHEVFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ +I Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNENIVR 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RATDISVYYDDL 161 >gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium profundum SS9] gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit [Photobacterium profundum SS9] Length = 377 Score = 91.1 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W P EV + D + N L D E+ + NL + +S+ + +A+ Sbjct: 43 KQLSFFWRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPI 99 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A +Y Sbjct: 100 VSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEYIIKRAGDISKYYD 159 Query: 168 TL 169 L Sbjct: 160 DL 161 >gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] Length = 155 Score = 91.1 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 3/150 (2%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 6 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKAN 160 + +II ++ D +F+ E I +A Sbjct: 123 YTHIIRNIVNDPAVVFDDIVENEHIIKRAK 152 >gi|42543287|pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH Ferrous Ions At Neutral Ph gi|42543288|pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH Ferrous Ions At Neutral Ph gi|42543289|pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS Ions At Ph 5 gi|42543290|pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS Ions At Ph 5 Length = 375 Score = 90.7 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + + P EV + D ++ L + E+ + NL + ES+ Sbjct: 32 KYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLESIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 149 RAEGISSYYDEL 160 >gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] Length = 377 Score = 90.7 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] Length = 377 Score = 90.7 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|21672460|ref|NP_660527.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091143|sp|Q8K9W4|RIR2_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|21623075|gb|AAM67738.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 376 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +K + + ++ + KY + + W P E+ + D + Sbjct: 6 FSKKKNNQLKEPMFFGQSVNIARYDQQKYNIFEKLIEKQLSFFWRPEEIDLSKDRIDF-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + L +E+ + NL + +S+ + +A +S PE ++ +F E +HS + Sbjct: 64 -DNLPSNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ + +F+ +I +A Y L Sbjct: 123 YTHIIRNIINNPSIVFDDIISNKNINDRAQDISIYYDEL 161 >gi|15616797|ref|NP_240009.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681552|ref|YP_002467937.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682108|ref|YP_002468492.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471235|ref|ZP_05635234.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134533|sp|P57275|RIR2_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|25285834|pir||G84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) nrdB [imported] - Buchnera sp. (strain APS) gi|10038860|dbj|BAB12895.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621841|gb|ACL29997.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624395|gb|ACL30550.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087074|gb|ADP67154.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 376 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 3/164 (1%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + ++ + KY + + W P E+ + D ++ Sbjct: 5 IFSKKKNNQLKEPMFFGQPVNIARYDQQKYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQ 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + L D+E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 65 N---LPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWIETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +II ++ +F+ +I +A Y L + + Sbjct: 122 SYTHIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLT 165 >gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus 10329] Length = 377 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi ATCC BAA-1116] gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116] Length = 377 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] Length = 377 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W P EV + D + N L + E+ + NL + +S+ + +A+ Sbjct: 43 KQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPL 99 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 +S PE ++ +F E +HS ++ +II ++ D G +F+ E I +A Y Sbjct: 100 VSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYD 159 Query: 168 TL 169 L Sbjct: 160 DL 161 >gi|118602534|ref|YP_903749.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567473|gb|ABL02278.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 378 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 3/147 (2%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +V + K+ + + W P E+ + D + + L +E+ + Sbjct: 18 MFFGDSMNVTRFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDF---SKLLPNEKHIF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 NL + +S+ +A +S PE ++ +F E +HS ++ +II ++ + Sbjct: 75 VSNLQYQILLDSVQGRAPNIAFLPIVSLPEVENWIETWSFSETIHSRSYTHIIRAIINEP 134 Query: 143 GELFNMYREVPSITAKANWALQYTQTL 169 G +F+ + I +A A ++ L Sbjct: 135 GVIFDDIMKTDEIIQRAESASKHYDGL 161 >gi|319760602|ref|YP_004124540.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus Blochmannia vafer str. BVAF] gi|318039316|gb|ADV33866.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus Blochmannia vafer str. BVAF] Length = 376 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 3/156 (1%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +K + + L ++ + K+ + + W P E+ + D ++S Sbjct: 9 KKNNQLLEPMFLGQPVNIVRFDQQKHIIFEKLIEKQLSFFWRPEEIDISKDRIDYQS--- 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ + Sbjct: 66 LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETWSFFETIHSRSYTH 125 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 II ++ +F+ I +A Y L Sbjct: 126 IIRNIVTHPSSVFDDIVTNKEILKRAKDISIYYDDL 161 >gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] Length = 386 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P E+ + D + + D E+ NL + +S+ Sbjct: 31 RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 87 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A +S+P +L F E +HS ++ +I+ + +D F+ + P+I Sbjct: 88 RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 147 Query: 158 KANWALQYTQTL---------SSPSFHYWNKRRRSRILTRSLRF 192 +A QY + + YW +R L + RF Sbjct: 148 RAESIGQYYDDVLYWIRKYENAKEDLRYWEERDDHTALDDARRF 191 >gi|153835812|ref|ZP_01988479.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi HY01] gi|148867435|gb|EDL66832.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi HY01] Length = 377 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] Length = 377 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W P EV + D + N L + E+ + NL + +S+ + +A+ Sbjct: 43 KQLSFFWRPEEVDVSGDRIDY---NNLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPI 99 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A +Y Sbjct: 100 VSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENDYIIKRAGDISKYYD 159 Query: 168 TL 169 L Sbjct: 160 DL 161 >gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] Length = 377 Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +II ++ D +F+ E I +A Y L Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDL 161 >gi|311085920|gb|ADP66002.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086491|gb|ADP66572.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087626|gb|ADP67705.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 359 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D +++ L D+E+ + NL + +S+ Sbjct: 16 KYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQN---LPDNEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ +F+ +I Sbjct: 73 RSPNIAFLPIISIPELETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYD 132 Query: 158 KANWALQYTQTLSSPS 173 +A Y L + + Sbjct: 133 RAQNISIYYDELINLT 148 >gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29] Length = 376 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ + + + W P EV + D + + L++ E+ + +NL + + +S+ Sbjct: 31 VKHPAIDKLTERSLSFFWRPEEVDLSKDAIDY---SRLSEQEQYVFTQNLKYQSLLDSVQ 87 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L +S+ ++ +F E +HS ++ +I+ +L +D +F+ I Sbjct: 88 GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIM 147 Query: 157 AKANWALQYTQTL 169 A+A QY L Sbjct: 148 ARATSVTQYYDDL 160 >gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 377 Score = 88.7 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KFEIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNEYIIK 149 Query: 158 KANWALQYTQTLSSPS 173 +A +Y L S + Sbjct: 150 RAGDISRYYDELISAT 165 >gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] Length = 327 Score = 88.7 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 6/150 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W + L+ +ER + K+ LG ++ ANN + ++ Sbjct: 25 FWDQNVKQFWLPEEISVSKDVKVW---SELSPEERNLYKKVLGGLTLLDTKQANNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I T+L + E+F P++ KA Sbjct: 82 MSLTDNLQRKAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIV 141 Query: 163 LQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 L + + + + S L L + Sbjct: 142 LAQYEN-TDDRYGLYMSMATSVFLESFLFY 170 >gi|330858746|ref|YP_004415121.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2] gi|327397680|gb|AEA73182.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2] Length = 389 Score = 88.4 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 3/145 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRR 182 +A +Y + + Y N Sbjct: 149 RAESIGRYYDDVLVKTREYQNAVED 173 >gi|148244629|ref|YP_001219323.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Vesicomyosocius okutanii HA] gi|146326456|dbj|BAF61599.1| ribonucleoside-diphosphate reductase beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 378 Score = 88.4 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 64/149 (42%), Gaps = 4/149 (2%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M + +V + K+ + + W P E+ + D + L +E+ Sbjct: 16 EPMFFGNTVNVARFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDFAK---LLPNEKH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + NL + +S+ + + +A +S PE ++ +F E +HS ++ +II ++ Sbjct: 73 IFISNLQYQILLDSVQSRSPNIAFLPIVSLPELENWIETWSFSETIHSRSYTHIIRAIVN 132 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTL 169 + G +F+ ++ I +A ++ L Sbjct: 133 EPGIVFDDIMKIDEIIQRAESVSKHYNEL 161 >gi|71892252|ref|YP_277986.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796358|gb|AAZ41109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 376 Score = 88.0 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D ++S L D E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQLSFFWRPEEIDISKDRIDFQS---LPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ +F+ I Sbjct: 90 RSPNIALLPLISIPELEIWVETWSFFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILK 149 Query: 158 KANWALQYTQTL 169 +A Y L Sbjct: 150 RAKDISTYYDNL 161 >gi|295698298|ref|YP_003602953.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Riesia pediculicola USDA] gi|291156973|gb|ADD79418.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Riesia pediculicola USDA] Length = 375 Score = 88.0 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 4/144 (2%) Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + + M ++++ KY + W P E+ + D ++S L Sbjct: 11 DPLKEPMFFGNHVNISRFDQQKYSIFETLTEKQLSFFWRPEEIDISKDRIDYQS---LKL 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + RNL + +S+ + + A +S PE ++ +F E +HS ++ YII Sbjct: 68 YEKKIFIRNLQYQILLDSIQSRSPNCAFLPIVSLPEVENWIETWSFSETIHSRSYTYIIR 127 Query: 137 SLGLDEGELFNMYREVPSITAKAN 160 ++ D +F+ I +A Sbjct: 128 NIIDDPSLIFDKIVSNQEIIDRAK 151 >gi|119944866|ref|YP_942546.1| ribonucleotide-diphosphate reductase subunit beta [Psychromonas ingrahamii 37] gi|119863470|gb|ABM02947.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychromonas ingrahamii 37] Length = 381 Score = 88.0 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W P E+ + D + L D E+ + NL + +S+ + +A+ Sbjct: 43 KQLSFFWRPEEIDVSRDRIDF---LNLPDHEQHIFISNLKYQTLLDSIQGRSPNIALLPI 99 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 +S PE ++ +F E +HS ++ +I+ +L + E+F I +A Y Sbjct: 100 VSLPELETWIETWSFSETIHSRSYTHILRNLFTEPAEIFEDIVTNVEIQKRATDISGYYD 159 Query: 168 TL 169 L Sbjct: 160 AL 161 >gi|33519930|ref|NP_878762.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Blochmannia floridanus] gi|33504276|emb|CAD83168.1| ribonucleoside-diphosphate reductase 1 beta chain [Candidatus Blochmannia floridanus] Length = 376 Score = 87.6 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 3/142 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D ++S L + E+ + NL + +S+ Sbjct: 33 KHIIFEKLIEKQLSFFWRPEEIDISKDRIDYQS---LPNHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ +F+ I Sbjct: 90 RSPNIALLPLISIPELETWVETWSFFETIHSRSYTHIIRNIVNHPSVIFDDIVTNKEILK 149 Query: 158 KANWALQYTQTLSSPSFHYWNK 179 +A Y L + +Y+ Sbjct: 150 RAKDISMYYDDLIKLTNYYYTL 171 >gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 226 Score = 87.6 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 16/83 (19%) Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I +L D+ E LFN +PSI KA WA ++ + Sbjct: 1 MFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIAS--- 57 Query: 172 PSFHYWNKRRRSRILTRSLRFLC 194 + TR + F C Sbjct: 58 ----------DTSFDTRCVAFAC 70 >gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 377 Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W P EV + D + N L D E+ + NL + +S+ + +A+ Sbjct: 43 KQLSFFWRPEEVDVSGDRI---NYNNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPI 99 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 +S PE ++ +F E +HS ++ +II ++ + +F+ E I +A +Y Sbjct: 100 VSIPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYD 159 Query: 168 TL 169 L Sbjct: 160 AL 161 >gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] Length = 377 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KFEIFEKLIEKQLSFFWRPEEVDVSGDRI---NYNNLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ E I Sbjct: 90 RSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIK 149 Query: 158 KANWALQYTQTLSSPS 173 +A +Y L S + Sbjct: 150 RAGDISKYYDALISAT 165 >gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] Length = 377 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KFEIFEKLIEKQLSFFWRPEEVDVSGDRI---NYNNLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ E I Sbjct: 90 RSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIVK 149 Query: 158 KANWALQYTQTL 169 +A +Y L Sbjct: 150 RAGDISKYYDDL 161 >gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus] gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus] Length = 280 Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAF 122 ++ W + LT E+ +K L FFA + +V N+V + +S E + + QA Sbjct: 1 MSDW---SKLTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAA 57 Query: 123 EEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQ 167 E +H+ T+ +I +L + + PSI ANW ++ Sbjct: 58 NELIHNETYMNLIDNLLPSPKKREKALDAISNYPSIRLIANWVERWMD 105 >gi|258597037|ref|XP_001347439.2| ribonucleotide reductase small subunit, putative [Plasmodium falciparum 3D7] gi|254922415|gb|AAN35352.2| ribonucleotide reductase small subunit, putative [Plasmodium falciparum 3D7] Length = 335 Score = 86.4 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 15/158 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D K L + ++ Sbjct: 17 NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKD------KQYLENIDK 70 Query: 80 LMIKRNLG---FFASSESLVANN---IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 M+ + F++ + V I + + PE R + Q E +H + Sbjct: 71 NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 I + D + + N E+ S+ K W + ++ Sbjct: 131 IFETYIPDSKQKRVIINKVIELDSVLKKQKWLTEIFES 168 >gi|228861159|ref|YP_002854182.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51] gi|227438833|gb|ACP31145.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51] Length = 392 Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYQKEI 180 >gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] Length = 318 Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W L+D +R + + LG +++ + I Sbjct: 19 FWNQNIMQFWTDEEIPLSDDKMSW---IELSDAQRELYMKVLGGLTLLDTIQGGVGIPKI 75 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L E +H+ ++ I T+L E +F + P + KA W Sbjct: 76 VEHVDGLQRKAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWI 135 Query: 163 LQYTQTLSSP 172 Y +++P Sbjct: 136 SVYYNNITTP 145 >gi|291290450|dbj|BAI83245.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage AR1] Length = 392 Score = 85.7 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEI 180 >gi|32709427|gb|AAP86732.1| NrdB [Enterobacteria phage RB3] Length = 258 Score = 85.7 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + + N + + S Sbjct: 149 RAESIGRYYDDVLIKTREWENAKEFVELAKES 180 >gi|32709431|gb|AAP86734.1| NrdB [Enterobacteria phage T2H] Length = 392 Score = 85.7 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYKKEI 180 >gi|32709423|gb|AAP86730.1| NrdB [Enterobacteria phage RB27] Length = 392 Score = 85.3 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEI 180 >gi|116326446|ref|YP_803166.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32] gi|32709425|gb|AAP86731.1| NrdB [Enterobacteria phage RB32] gi|115344039|gb|ABI95048.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32] Length = 392 Score = 85.3 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + + N + + S Sbjct: 149 RAESIGRYYDDVLVKTREWENAKEFVELAKES 180 >gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-66c26] gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CIP 107932] gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-76w55] gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-97b34] gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-37x79] gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile CD196] gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile R20291] gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CD196] gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile R20291] Length = 323 Score = 85.3 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I +L L+ ELF P++ KA+ Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141 Query: 163 LQYTQTLSSP 172 L + ++ Sbjct: 142 LAQYENTTNQ 151 >gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-23m63] gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] Length = 323 Score = 85.3 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKIW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I +L + ELF P++ KA+ Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLV 141 Query: 163 LQYTQTLSSP 172 L + ++ Sbjct: 142 LAQYENTTNQ 151 >gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile 630] gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-63q42] gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile ATCC 43255] gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Clostridium difficile] Length = 323 Score = 84.9 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I +L L+ ELF P++ KA+ Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141 Query: 163 LQYTQTLSSP 172 L + ++ Sbjct: 142 LAQYENTTNQ 151 >gi|82793227|ref|XP_727957.1| ribonucleotide reductase [Plasmodium yoelii yoelii str. 17XNL] gi|23484058|gb|EAA19522.1| ribonucleotide reductase, putative [Plasmodium yoelii yoelii] Length = 373 Score = 84.9 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 15/150 (10%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L + P+KY W Y + W + D K L ++ Sbjct: 18 NDEILKENQFRWVMFPIKYKTFWNYYKEIESLFWTAEDHNFDKD------KPFLNSMDKT 71 Query: 81 MIKRNLGFFASSES------LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + + L F I + + PE R + Q E +H+ + I Sbjct: 72 TLSKLLELFCFYSLKDLHLRDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACI 131 Query: 135 ITSLGLD---EGELFNMYREVPSITAKANW 161 S LD + E+ + + S+ K NW Sbjct: 132 FESYSLDSKQKKEIIDKVLKYESVFKKQNW 161 >gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus sp. JDR-2] gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2] Length = 318 Score = 84.9 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 6/150 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W ++D ER + K LG +++ + I Sbjct: 17 FWQQNVMQFWTDEEIPLSDDKMDW---MEMSDTERTVYKNVLGGLTLLDTIQGGVGMPKI 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L + E +H+ ++ I T+L E +F + KA Sbjct: 74 LEHVDGLQRKAVLAFMSMMEQIHAKSYSSIFTTLASTEEIDAIFQWVETNEQLQKKATLV 133 Query: 163 LQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + Q + + + S L L + Sbjct: 134 SSWYQGIET-KQQLYKAMAASVFLESYLFY 162 >gi|308814593|ref|YP_003934867.1| ribonucleotide reductase B subunit [Shigella phage SP18] gi|308206185|gb|ADO19584.1| ribonucleotide reductase B subunit [Shigella phage SP18] Length = 392 Score = 84.9 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 3/151 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L + ++ + NL + + +S+ Sbjct: 32 RHKVFEELTEKQLSFFWRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPAAALAALVSDPSLDTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +A Y + + + + N+ + Sbjct: 149 RAESIGHYYDDVLNKTRQWQNQIAFVELAKE 179 >gi|328861691|gb|EGG10794.1| hypothetical protein MELLADRAFT_93450 [Melampsora larici-populina 98AG31] Length = 130 Score = 84.9 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ D+ W+ N L +DE+ IK L F A+S+ +V N++ + E Sbjct: 60 FWTAGEIDPSKDMHNWE--NRLKNDEKHFIKHILAFLATSDRIVNQNLIKRYSGEVQAAE 117 Query: 113 CRQYLLRQAFE 123 + + Q Sbjct: 118 AQCFYGFQIMI 128 >gi|282599256|ref|YP_003358568.1| NrdB ribonucleotide reductase subunit beta [Shigella phage phiSboM-AG3] gi|226973562|gb|ACO94315.1| NrdB ribonucleotide reductase subunit beta [Shigella phage phiSboM-AG3] Length = 367 Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + + + Y + W P EV + D A + + LT E+ + + NL +S+ Sbjct: 36 WPFVQKWYEKGLSQFWRPEEVDITKDKADYAT---LTPAEKRIYESNLKRQTMLDSIQGA 92 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 A S PE + +L +EA+HS ++ +I+ + D G +F+ +V I Sbjct: 93 APFEAFGPWASTPEMQFAVLEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVAEI 149 >gi|113951985|gb|AAP86733.2| NrdB [Enterobacteria phage RB61] Length = 251 Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYQKEI 180 >gi|50404173|gb|AAT76849.1| ribonucleotide reductase small subunit [Plasmodium falciparum] Length = 324 Score = 84.5 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 14/152 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D K L + ++ Sbjct: 17 NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKD------KQYLENIDK 70 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 M+ ++L + I + + PE R + Q E +H + I + Sbjct: 71 NMLVKDLHVY-----EEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFETYI 125 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQT 168 D + + N E+ S+ K W + ++ Sbjct: 126 PDSKQKRVIINKVIELDSVLKKQKWLTEIFES 157 >gi|238695377|ref|YP_002922570.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage JS10] gi|220029513|gb|ACL78447.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage JS10] Length = 379 Score = 84.5 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEELCEKQLSFFWRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAALQALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMK 148 Query: 158 KANWALQYTQTL 169 +A +Y + Sbjct: 149 RAESIGRYYDDV 160 >gi|161622513|ref|YP_001595352.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage JS98] gi|160213819|gb|ABX11158.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage JS98] Length = 379 Score = 84.5 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEELCEKQLSFFWRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAALQALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMK 148 Query: 158 KANWALQYTQTL 169 +A +Y + Sbjct: 149 RAESIGRYYDDV 160 >gi|314121808|ref|YP_004063927.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage vB_EcoM-VR7] gi|313151565|gb|ADR32621.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage vB_EcoM-VR7] Length = 392 Score = 84.1 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 3/151 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L + ++ + NL + + +S+ Sbjct: 32 RHKVFEELTEKQLSFFWRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPAAALAALVSDPSLDTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +A Y + + + + N+ + Sbjct: 149 RAESIGYYYDDVLNKTRQWQNQIAFVELAKE 179 >gi|113951975|gb|AAP86729.2| NrdB [Enterobacteria phage RB23] Length = 251 Score = 84.1 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEI 180 >gi|221055321|ref|XP_002258799.1| Ribonucleotide reductase small subunit [Plasmodium knowlesi strain H] gi|193808869|emb|CAQ39572.1| Ribonucleotide reductase small subunit,putative [Plasmodium knowlesi strain H] Length = 335 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D K L ++ Sbjct: 17 NNDDILKENQFRWVMFPIKYKTFWSYYKEVESLFWTAEDYNFDKD------KKFLESIDK 70 Query: 80 LMIKRNLG---FFASSESLVANN---IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 M+ + F++ + V I + + PE R + Q E +H + Sbjct: 71 NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 I + D + + N ++ S+ K W + +T Sbjct: 131 IFETYIPDAKQKRTIINKVIQLDSVLKKQKWLTELFET 168 >gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] Length = 322 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus E33L] gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus E33L] gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis] gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 322 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|299779174|ref|YP_003734368.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage IME08] gi|298105903|gb|ADI55547.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage IME08] Length = 389 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 15/164 (9%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 42 RHKVFEELCEKQLSFFWRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQG 98 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 99 RAPSAALQALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDDAIMK 158 Query: 158 KANWALQYTQTLSSPS------------FHYWNKRRRSRILTRS 189 +A +Y + + F K+ + ++ Sbjct: 159 RAESIGRYYDDVIDKTRLYQNALEEYHEFSEGVKQAKYELMRSL 202 >gi|228861541|ref|YP_002854562.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14] gi|227438557|gb|ACP30870.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14] Length = 392 Score = 84.1 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEI 180 >gi|113951998|gb|AAP86736.2| NrdB [Enterobacteria phage T6] Length = 247 Score = 84.1 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLFADPSKVFDEILLDEAIMK 148 Query: 158 KANWALQYTQTL 169 +A +Y + Sbjct: 149 RAESIGKYYDDV 160 >gi|156096873|ref|XP_001614470.1| ribonucleotide reductase small subunit [Plasmodium vivax SaI-1] gi|148803344|gb|EDL44743.1| ribonucleotide reductase small subunit, putative [Plasmodium vivax] Length = 335 Score = 84.1 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 15/158 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D K L ++ Sbjct: 17 NNDDILKENQFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKD------KKFLESIDK 70 Query: 80 LMIKRNLG---FFASSESLVANN---IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 M+ + F++ + V I + + PE R + Q E +H + Sbjct: 71 NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 I + D + + N ++ S+ K W + +T Sbjct: 131 IFETYIPDAKQKRVIINKVIQLDSVLKKQKWLTELFET 168 >gi|32709417|gb|AAP86727.1| NrdB [Enterobacteria phage LZ2] Length = 313 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTL 169 +A +Y + Sbjct: 149 RAESIGRYYDDV 160 >gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] Length = 337 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 6/150 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P EVP+ D+ W LT+ ER++ KR L ++ N+ + ++ Sbjct: 36 FWDQNVKQFWLPEEVPISKDIPSWAE---LTESERILYKRVLAGLTLLDTKQGNDGIPSM 92 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I T+L +LF E P + KA Sbjct: 93 MDLTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKHEIDDLFLWIEEEPLLQNKAKIV 152 Query: 163 LQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 L+ + + P Y + S L L + Sbjct: 153 LRQYKNVEDPKSLYMSMAT-SVFLESFLFY 181 >gi|9632793|ref|NP_049841.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4] gi|1172940|sp|P11156|RIR2_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Protein B2; AltName: Full=Ribonucleotide reductase gi|5354417|gb|AAD42624.1|AF158101_211 NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4] gi|15342|emb|CAA27757.1| small subunit B2 [Enterobacteria phage T4] gi|299780589|gb|ADJ39951.1| aerobic NDP reductase small subunit [Enterobacteria phage T4T] Length = 388 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELIERQISFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTL 169 +A +Y + Sbjct: 149 RAESIGRYYDDV 160 >gi|152974880|ref|YP_001374397.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023632|gb|ABS21402.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH 391-98] Length = 322 Score = 83.7 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E+ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQTTYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ N + + L E VH+ ++ +I T+L +E E+F+ + P + KA Sbjct: 74 LVHIENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDQHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRKLLKP 143 >gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Ames] gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Sterne] gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis str. A2012] gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis str. Al Hakam] gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. A1055] gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Kruger B] gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Vollum] gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Australia 94] gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis CI] gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Ames] gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Sterne] gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus anthracis] gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bacillus thuringiensis str. Al Hakam] gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus] gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus biovar anthracis str. CI] gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 322 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 322 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] Length = 322 Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 +Y + L P Sbjct: 134 TRYYRRLLKP 143 >gi|32709433|gb|AAP86735.1| NrdB [Enterobacteria phage U5] Length = 391 Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 60/145 (41%), Gaps = 3/145 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRR 182 +A +Y + + + N + Sbjct: 149 RAESIGRYYDDVLVKTREWENAKEN 173 >gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] Length = 322 Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 +Y + L P Sbjct: 134 TRYYRRLLKP 143 >gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] Length = 333 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 5/161 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E+ +++ +K L+ E + N W+P +VP+ +D+ W + Sbjct: 5 EQVIDMSNKEKARKVPLAINWNRLQDEKDLEVWNRLTANFWLPEKVPLSNDVQSWAT--- 61 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L ++E+ + R +++ ++ P L AF EAVH+ ++ Sbjct: 62 LREEEQTLTIRVFTGLTLLDTIQNTVGAPSMMPDAQTPHEEAVLTNIAFMEAVHARSYSS 121 Query: 134 IITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 I ++L + E F E P + AKA L+ S P Sbjct: 122 IFSTLCSTREVDEAFRWSEENPQLQAKARLILEEYDAASDP 162 >gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] Length = 322 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRRLLKP 143 >gi|113951972|gb|AAP86728.2| NrdB [Enterobacteria phage RB14] Length = 251 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 3/152 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 +A +Y + + ++ N + Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEI 180 >gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] Length = 182 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 5/141 (3%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + ++ E + N W+P ++P+ +D+ W + LT E+ + R Sbjct: 10 NAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSW---STLTQAEKQLTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L F EAVH+ ++ I ++L L D E + Sbjct: 67 TLLDTIQNTVGAPTLMPDALTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYR 126 Query: 148 MYREVPSITAKANWALQYTQT 168 E P + KA L+Y Q Sbjct: 127 WSEENPYLQKKAEIILRYYQD 147 >gi|122892861|gb|ABM67449.1| NrdB [Xanthomonas campestris] gi|122892863|gb|ABM67450.1| NrdB [Xanthomonas campestris] gi|122892865|gb|ABM67451.1| NrdB [Xanthomonas campestris] gi|122892867|gb|ABM67452.1| NrdB [Xanthomonas campestris] gi|122892869|gb|ABM67453.1| NrdB [Xanthomonas campestris] gi|122892871|gb|ABM67454.1| NrdB [Xanthomonas campestris] gi|122892873|gb|ABM67455.1| NrdB [Xanthomonas campestris] gi|122892875|gb|ABM67456.1| NrdB [Xanthomonas campestris] gi|122892877|gb|ABM67457.1| NrdB [Xanthomonas campestris] gi|122892879|gb|ABM67458.1| NrdB [Xanthomonas campestris] gi|122892881|gb|ABM67459.1| NrdB [Xanthomonas campestris] gi|122892883|gb|ABM67460.1| NrdB [Xanthomonas campestris] gi|122892885|gb|ABM67461.1| NrdB [Xanthomonas campestris] gi|122892887|gb|ABM67462.1| NrdB [Xanthomonas campestris] gi|122892889|gb|ABM67463.1| NrdB [Xanthomonas campestris] gi|122892891|gb|ABM67464.1| NrdB [Xanthomonas campestris] gi|122892893|gb|ABM67465.1| NrdB [Xanthomonas campestris] gi|122892895|gb|ABM67466.1| NrdB [Xanthomonas campestris] gi|122892897|gb|ABM67467.1| NrdB [Xanthomonas campestris] gi|122892899|gb|ABM67468.1| NrdB [Xanthomonas campestris] gi|122892901|gb|ABM67469.1| NrdB [Xanthomonas campestris] gi|122892903|gb|ABM67470.1| NrdB [Xanthomonas campestris] gi|122892905|gb|ABM67471.1| NrdB [Xanthomonas campestris] gi|122892907|gb|ABM67472.1| NrdB [Xanthomonas campestris] gi|122892909|gb|ABM67473.1| NrdB [Xanthomonas campestris] gi|122892911|gb|ABM67474.1| NrdB [Xanthomonas campestris] gi|122892913|gb|ABM67475.1| NrdB [Xanthomonas campestris] gi|122892915|gb|ABM67476.1| NrdB [Xanthomonas campestris] gi|122892917|gb|ABM67477.1| NrdB [Xanthomonas campestris] gi|122892919|gb|ABM67478.1| NrdB [Xanthomonas campestris] gi|122892921|gb|ABM67479.1| NrdB [Xanthomonas campestris] gi|122892923|gb|ABM67480.1| NrdB [Xanthomonas campestris] gi|122892925|gb|ABM67481.1| NrdB [Xanthomonas campestris] gi|122892927|gb|ABM67482.1| NrdB [Xanthomonas campestris] gi|122892929|gb|ABM67483.1| NrdB [Xanthomonas campestris] gi|122892931|gb|ABM67484.1| NrdB [Xanthomonas campestris] gi|122892933|gb|ABM67485.1| NrdB [Xanthomonas campestris] gi|122892935|gb|ABM67486.1| NrdB [Xanthomonas campestris] gi|122892937|gb|ABM67487.1| NrdB [Xanthomonas campestris] Length = 175 Score = 82.2 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 7/141 (4%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV M+ D + N L+ E+ +G A+ +S I + ++++P Sbjct: 1 PDEVDMKGDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHA 56 Query: 116 YLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSP 172 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Y + Sbjct: 57 NAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDFMRDK 116 Query: 173 SFHYWNKRRRSRILTRSLRFL 193 + + + + F Sbjct: 117 TAETLIRALIQSSILEGINFY 137 >gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter aurescens TC1] gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter aurescens TC1] Length = 324 Score = 82.2 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + NN W+P +VP+ +D+ W + LT DE+ + R Sbjct: 15 NWNKIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR-- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 72 DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCS-TKEIDDAFRWS 130 Query: 151 -EVPSITAKANWALQYTQ 167 E ++ KA + Y Q Sbjct: 131 LENENLQKKAQIVMDYYQ 148 >gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279] gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279] Length = 429 Score = 82.2 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD W L+ +E+ + ++ L +++ + + + Sbjct: 24 FWDQNVRQFWVDEEIPLADDKLTW---MTLSREEQRVYEQVLAGLTLLDTVQGSVGMPLL 80 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 +H+ + + + + E +H+ ++ I ++L E ELF+ R P + K + Sbjct: 81 SQHIESLQAKAVMGFMGAMEHMHAKSYSSIFSTLCTSERIAELFDWVRSEPVLQEKQTFV 140 Query: 163 LQ 164 + Sbjct: 141 HR 142 >gi|294661479|ref|YP_003579932.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15] gi|292660640|gb|ADE34888.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15] Length = 402 Score = 82.2 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 3/134 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + W P EV + D + L + E+++ NL + +++ Sbjct: 44 KHKVFESLTQKQLSFFWRPEEVDLSTDRMQYAK---LPEHEKIIFDSNLQYQTLLDTIQG 100 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 LA S+ ++ AF E +HS ++ +I +L +D F+ +I Sbjct: 101 RGPNLAFLPIASDVSMETWIETWAFSETIHSRSYTHIQRNLHIDPSVQFDQILRNEAIMK 160 Query: 158 KANWALQYTQTLSS 171 ++ +Y TL Sbjct: 161 RSASMTRYYDTLID 174 >gi|32709437|gb|AAP86737.1| NrdB [Enterobacteria phage TuIa] Length = 391 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 3/145 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEELIEKSLSFFWRPEEVNLMLDSAQF---NKLPQFQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + LS+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMALLSDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFHYWNKRRR 182 +A +Y + + H+ N + Sbjct: 149 RAESIGKYYDDVLVKTRHWENAKEN 173 >gi|326804582|ref|YP_004327453.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage Vi01] gi|301795232|emb|CBW37950.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage Vi01] Length = 367 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + + + Y + W P EV + D A + + L+ E+ + NL +S+ Sbjct: 36 WPFVQKWYEKGLSQFWRPEEVDVTKDKADFAT---LSAAEQHIYFSNLKRQTMLDSIQGA 92 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 A S PE + +L +EA+HS ++ +I+ + D G +F+ +V I Sbjct: 93 APFEAFGPWASTPEAQFAILEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVQEI 149 >gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] Length = 326 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + LT+ E+ M R +++ ++ Sbjct: 28 EVWDRLVGNFWLPEKVPVSNDIQSWAT---LTEAEKTMTTRVFTGLTLLDTIQGTVGAVS 84 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + E F E P++ KA Sbjct: 85 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEAFRWSEENPNLQRKAEI 144 Query: 162 ALQYTQ 167 L Y + Sbjct: 145 VLDYYR 150 >gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] Length = 425 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +DL WK+ LT DE+LM R Sbjct: 116 NWNKIQDDKDLEVWDRLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLL 172 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 ++L +++ P AF E+VH+ ++ I ++L E E F Sbjct: 173 DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 232 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E ++ KA Y + P L S + Sbjct: 233 ENEALQKKAEIVKSYYDG-NDPEKRKVASTMLESFLFYSGFYA 274 >gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] Length = 193 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTL 169 Y + L Sbjct: 134 TSYYRRL 140 >gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] Length = 334 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L +DE+ + R +++ + ++ Sbjct: 36 EVWDRLVGNFWLPEKVPLSNDIQSWHT---LNEDEQRLTMRVFTGLTLLDTIQGSVGAVS 92 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDE-GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L G E E F E P++ KA Sbjct: 93 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLTGTPEIDEAFRWSEENPALQKKAAI 152 Query: 162 ALQYTQ 167 L+ + Sbjct: 153 VLERYR 158 >gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] Length = 193 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 8/153 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133 Query: 163 LQYTQTLSSPS---FHYWNKRRRSRILTRSLRF 192 Y + L P + S L L + Sbjct: 134 TSYYRRLLKPEVTKKELYMAMVASVFLESYLFY 166 >gi|74419022|gb|ABA03237.1| ribonucleoside diphosphate reductase small subunit [Enterobacteria phage LZ7] Length = 244 Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYADPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPS 173 +A +Y + + Sbjct: 149 RAESIGRYYDDVLDKT 164 >gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 326 Score = 81.8 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 5/142 (3%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 R + ++ E + NN W+P ++P+ +D+ W + LT +E+L+ R Sbjct: 10 RVNAINWNRIQDDKDVEVWNRLVNNFWLPEKIPLSNDVQSWAT---LTPEEQLLTMRVFT 66 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145 +++ +++ P L AF E+VH+ ++ I ++L + E Sbjct: 67 GLTLLDTIQGTVGAVSLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEA 126 Query: 146 FNMYREVPSITAKANWALQYTQ 167 F E + KA + Y Q Sbjct: 127 FRWSEENVHLQKKAQIVMDYYQ 148 >gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 324 Score = 81.8 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 5/151 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +K L + + ++ + + NN W+P +VP+ +D+ W N LT E Sbjct: 1 MTEKVKLLSHVEAINWNRIQDDKDVDVWNRLVNNFWLPEKVPLSNDVQSW---NTLTPAE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + R +++ +++ P AF E+VH+ ++ I ++L Sbjct: 58 QQLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117 Query: 139 --GLDEGELFNMYREVPSITAKANWALQYTQ 167 + E F E ++ KA + Y Q Sbjct: 118 ASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148 >gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi] gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] Length = 322 Score = 81.8 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRRLLKP 143 >gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 323 Score = 81.4 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 7/148 (4%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++DKR + ++ E + N W+P ++P+ +D+ WK LT+DE Sbjct: 1 MNDKRFTTVSA--INWNRIQDNKDLEIWNRLTVNFWLPEKIPLSNDIQSWKQ---LTEDE 55 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +++ R +++ + + P L AF EAVH+ ++ I ++L Sbjct: 56 QVLTTRVFTGLTLLDTIQNTVGAPVLMKDARTPHEEAVLSNIAFMEAVHARSYSSIFSTL 115 Query: 139 GLDE--GELFNMYREVPSITAKANWALQ 164 E F E P + KA L Sbjct: 116 CTTPQIDEAFRWAEENPLLQQKAKIILD 143 >gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] Length = 320 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 5/145 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ WK LT++E+ + R +++ A Sbjct: 21 EIWNRLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPA 77 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF EAVH+ ++ + ++L E F E P + KA Sbjct: 78 LMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAEENPLLQKKAQI 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRIL 186 L P L Sbjct: 138 ILDDYLAEGDPLKKKVASVFLESFL 162 >gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] Length = 322 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRRLLKP 143 >gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] Length = 322 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] Length = 322 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E+++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIVYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRRLLKP 143 >gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis] gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae] gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto] gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 322 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRRLLKP 143 >gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 193 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 8/153 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPS---FHYWNKRRRSRILTRSLRF 192 Y + L P + S L L + Sbjct: 134 TSYYRRLLKPEVTKKELYMAMVASVFLESYLFY 166 >gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus weihenstephanensis KBAB4] gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis KBAB4] gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] Length = 322 Score = 81.4 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] Length = 324 Score = 81.0 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 5/151 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +K L + D ++ E + N W+P +VP+ +D+ W + LTDDE Sbjct: 1 MSEKLKLVSHVDAINWNRIEDDVDMEVWDRLTANFWLPEKVPLSNDVQSWAT---LTDDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +L+ R +++ +++ P AF E+VH+ ++ I ++L Sbjct: 58 KLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117 Query: 139 --GLDEGELFNMYREVPSITAKANWALQYTQ 167 + E F E ++ KA + Y + Sbjct: 118 CNTREIDEAFRWSTENQNLQKKAQIIVDYYR 148 >gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] Length = 238 Score = 81.0 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 16/75 (21%) Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E +HS T+ +I + D E +F VPS+ KA WAL + Sbjct: 1 MENIHSETYSLLIDNYIKDPAEKDKIFRAIETVPSVRKKAEWALSWIND----------- 49 Query: 180 RRRSRILTRSLRFLC 194 + R + F C Sbjct: 50 --DNCFSERLIAFAC 62 >gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp. FB24] gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter sp. FB24] Length = 324 Score = 81.0 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 5/151 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +K L + + ++ + + NN W+P +VP+ +D+ W + LT DE Sbjct: 1 MTEKVKLLSHVEAINWNRIQDDKDVDVWNRLVNNFWLPEKVPLSNDVQSWAT---LTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + R +++ +++ P AF E+VH+ ++ I ++L Sbjct: 58 QQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTL 117 Query: 139 --GLDEGELFNMYREVPSITAKANWALQYTQ 167 + E F E ++ KA + Y Q Sbjct: 118 ASTKEIDEAFRWSTENANLQKKAQIVMDYYQ 148 >gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 343 Score = 81.0 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+ E+P+ D +W + L D++ + K+ LG ++ + + Sbjct: 29 IYNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLV 85 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ +P+ + + A E +H+ ++ +I +L +E +F+ E P + KA+ Sbjct: 86 SLHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADII 145 Query: 163 LQYTQTLSSPS 173 + + L P Sbjct: 146 TGHYRKLLKPD 156 >gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] Length = 326 Score = 81.0 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L++ E+ M R +++ ++ Sbjct: 28 EVWDRLVGNFWVPEKVPVSNDIQSWAT---LSEAEKNMTTRVFTGLTLLDTIQGTVGAVS 84 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + E F P++ KA Sbjct: 85 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEAFAWSEANPNLQRKAEI 144 Query: 162 ALQYTQ 167 L+Y + Sbjct: 145 VLEYYR 150 >gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 323 Score = 81.0 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 5/167 (2%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K+M + + G E + N W+P +VP+ +D+ WK LT++E+ + Sbjct: 2 KKMESGPVQAINWNRMIDGKDLEIWNRLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTL 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 R +++ A+ P L AF EAVH+ ++ + ++L Sbjct: 59 TIRVFTGLTLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTT 118 Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 E F +E P + KA L P L Sbjct: 119 PQIDEAFRWAQENPLLQKKAQIVLDDYLAEGDPLKKKVASVFLESFL 165 >gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 342 Score = 80.7 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+ E+P+ D +W + L D++ + K+ LG ++ + + Sbjct: 28 IYNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLV 84 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ +P+ + + A E +H+ ++ +I +L +E +F+ E P + KA+ Sbjct: 85 SLHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADII 144 Query: 163 LQYTQTLSSPS 173 + + L P Sbjct: 145 TGHYRKLLKPD 155 >gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki] Length = 322 Score = 80.7 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] Length = 322 Score = 80.7 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRRLLKP 143 >gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] Length = 323 Score = 80.7 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 5/156 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ WK LT +E+ + R Sbjct: 13 NWNRMQDDKDLEIWNRLTVNFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ A+ P L AF EAVH+ ++ + ++L E F Sbjct: 70 DTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAE 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 E P + KA L+ P L Sbjct: 130 ENPLLQKKAQLVLEDYLAQDDPLKKKVASVFLESFL 165 >gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] Length = 322 Score = 80.7 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] Length = 325 Score = 80.7 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 16 NWNRIEDDKDLEVWDRLVGNFWVPEKVPVSNDIQSWAT---LTPQEQELTTRVFTGLTLL 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P L AF E+VH+ ++ I ++L E F Sbjct: 73 DTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSTIFSTLISTPEIDEAFRWSE 132 Query: 151 EVPSITAKANWALQYTQ 167 E P + KA L+Y + Sbjct: 133 ENPHLQRKAEIILEYYR 149 >gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] Length = 193 Score = 80.7 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 8/153 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPS---FHYWNKRRRSRILTRSLRF 192 Y + L P + S L L + Sbjct: 134 TSYYRRLLKPEVTKKELYMAMVASVFLESYLFY 166 >gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus B4264] gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus] gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus] gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus] gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus B4264] gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] Length = 322 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai] gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri] gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana] gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis] Length = 322 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani] Length = 322 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 14579] gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 14579] gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis] gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni] gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis] gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] Length = 322 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti] gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota] gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis] gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus] gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae] gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 322 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TGYYRRLLKP 143 >gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 10987] gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus ATCC 10987] Length = 322 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage NCTC12673] Length = 378 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 8/138 (5%) Query: 38 KYGWAWE-----KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +Y W W P E+ M + KS L + + IK NL F Sbjct: 27 RYDWYSHNQLESLDRKQQAQLWFPEEISM---IHEPKSFIELPEHNQRQIKANLTFQTLM 83 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +S + + +++ L QA+ E +HS ++ +II S+ + ++F+ Y E Sbjct: 84 DSGQNRGLDNILIPLVTSSGLEGCLKTQAYFEYIHSRSYSHIIKSVFPNPTDVFDEYCEY 143 Query: 153 PSITAKANWALQYTQTLS 170 P I + N + ++L Sbjct: 144 PEIKTRINDEIDTYESLE 161 >gi|157692410|ref|YP_001486872.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus pumilus SAFR-032] gi|194015081|ref|ZP_03053698.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] gi|157681168|gb|ABV62312.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pumilus SAFR-032] gi|194014107|gb|EDW23672.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] Length = 326 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L + ER + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEISLNGDLLTWK---YLGEKERDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA+ Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETISEVFEWVKKNKFLQKKADM 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + +++ K + + S F Sbjct: 138 IVSLYRSIQKDDPISLFKAMVASVYLESFLFY 169 >gi|48696469|ref|YP_024511.1| putative ribonucleotide reductase minor subunit [Staphylococcus phage K] gi|37729163|gb|AAO47530.1| ORF81 [Staphylococcus phage K] gi|119658118|gb|ABL87153.1| putative ribonucleotide reductase minor subunit [Staphylococcus phage 812] gi|182627942|gb|ACB89104.1| gp ORF111 [Staphylococcus phage A5W] Length = 349 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 9/154 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + + W P E + DL+ W N LT+ E+ K+ L ++ + + Sbjct: 32 YWEQGISQFWTPEEFDVSRDLSSW---NSLTESEKNTYKKVLAGLTGLDTKQGGEGMNLV 88 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161 H P+ + E +H+ ++ +I T+L ++ + E + KA + Sbjct: 89 SYHEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFLKVKAQF 148 Query: 162 ALQYTQTLSSPS---FHYWNKRRRSRILTRSLRF 192 Y L P+ F + + S L +L + Sbjct: 149 IGYYYDQLLKPNPTIFDRYMAKVASAFLESALFY 182 >gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] Length = 322 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F + P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIV 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYYRRLLKP 143 >gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter chlorophenolicus A6] gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 324 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 5/151 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +K L + + ++ + + NN W+P +VP+ +D+ W N LT E Sbjct: 1 MTEKVKLLSHVEAINWNRIQDDKDVDVWNRLVNNFWLPEKVPLSNDVQSW---NTLTPVE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + R +++ +++ P AF E+VH+ ++ I ++L Sbjct: 58 QQLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117 Query: 139 --GLDEGELFNMYREVPSITAKANWALQYTQ 167 + E F E ++ KA + Y Q Sbjct: 118 ASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148 >gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] Length = 324 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + NN W+P +VP+ +D+ W N LT +E+ + R Sbjct: 15 NWNRIQDDKDLEVWNRLVNNFWLPEKVPLSNDIQSW---NTLTPEEQTLTMRVFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 72 DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWST 131 Query: 151 EVPSITAKANWALQYTQ 167 E + KA + Y + Sbjct: 132 ENEFLQKKARIVMDYYR 148 >gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium salmoninarum ATCC 33209] gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium salmoninarum ATCC 33209] Length = 325 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + NN W+P +VP+ +D+ W + LT DE+ + R Sbjct: 16 NWNRIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLL 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L +++ P AF E+VH+ ++ I ++L + E F Sbjct: 73 DTLQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSV 132 Query: 151 EVPSITAKANWALQYT 166 E ++ KA + Y Sbjct: 133 ENENLQKKAQIVMNYY 148 >gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] Length = 328 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P EVP+ D+ W L++ ER++ KR L ++ N+ + ++ Sbjct: 30 FWDENVKQFWLPEEVPISKDIPSWSQ---LSESERVLYKRVLAGLTLLDTKQGNDGIPSM 86 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I T+L + +LF E P + KA Sbjct: 87 MELTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKQEINDLFVWIEEEPLLQNKAKLV 146 Query: 163 LQYTQTLSSP 172 L+ + +P Sbjct: 147 LRQYKNTHTP 156 >gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] Length = 321 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W + L+D E+ + LG +++ + I Sbjct: 20 FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L A E +H+ ++ I T+L E +F E P + KA Sbjct: 77 MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136 Query: 163 LQYTQTLSSP 172 QY + +P Sbjct: 137 RQYYMNIHTP 146 >gi|308068541|ref|YP_003870146.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 321 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W + L+D E+ + LG +++ + I Sbjct: 20 FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L A E +H+ ++ I T+L E +F E P + KA Sbjct: 77 MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136 Query: 163 LQYTQTLSSP 172 QY + +P Sbjct: 137 RQYYMNIHTP 146 >gi|304373620|ref|YP_003858365.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16] gi|299829576|gb|ADJ55369.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16] Length = 391 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 67/182 (36%), Gaps = 3/182 (1%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+ + +++ + V + K+ + W P E+ + D Sbjct: 2 LTVMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFENLTEKQLSFFWRPEEIDLSIDRM 61 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + + E+++ NL + +++ LA S+ ++ AF E + Sbjct: 62 QYAK---MPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 118 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 HS ++ +I +L +D + F+ +I ++ +Y L + N + +L Sbjct: 119 HSRSYTHIQRNLHIDPSKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEML 178 Query: 187 TR 188 T Sbjct: 179 TS 180 >gi|255535950|ref|YP_003096321.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Flavobacteriaceae bacterium 3519-10] gi|255342146|gb|ACU08259.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Flavobacteriaceae bacterium 3519-10] Length = 324 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 9/160 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +EV D+ ++S L E+ +K L A Sbjct: 7 RIGYKPFEYPEIMQFVEAINKSFWVHSEVDFTADVQDFQS--QLEPHEKNAVKNALLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y HL PE A E HS + ++ LG ++ FN Sbjct: 65 QIEVSVKTFWG-NLYNHLPKPELNGLGSTFAECEFRHSEAYSRLLEVLGYNDA--FNHVV 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSL 190 E+P+I + ++ + +S K S +L S+ Sbjct: 122 EIPAIKKRIDFLSNVLKHANS----TTPKEYVSSLLLFSI 157 >gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae] gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi] Length = 322 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYHRRLLKP 143 >gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni] Length = 322 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSP 172 Y + L P Sbjct: 134 TSYHRRLLKP 143 >gi|308172806|ref|YP_003919511.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus amyloliquefaciens DSM 7] gi|307605670|emb|CBI42041.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus amyloliquefaciens DSM 7] Length = 327 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L E+ R L ++ N + I Sbjct: 24 FYAQNVKQFWLPEEISLNGDLLSWK---ALGPAEQTTYMRGLAGLTLLDTEQGNTGMPII 80 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H++ + + L A E VH+ ++ I +L E E+F + P + KA Sbjct: 81 AKHIAGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKTNPYLQRKAAL 140 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + K + + S F Sbjct: 141 ITGLYRDIKEGDAISLYKALVASVYLESFLFY 172 >gi|227496669|ref|ZP_03926945.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces urogenitalis DSM 15434] gi|226833817|gb|EEH66200.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces urogenitalis DSM 15434] Length = 324 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 6/152 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L + E+ M R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + E F E ++ KA Sbjct: 83 LIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENENLQRKAKI 142 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L Y + P L S + Sbjct: 143 ILDYYRG-DDPEKRKVASTMLESFLFYSGFYA 173 >gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis HI4320] Length = 322 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R + ++ E + N W+P ++P+ +D+ W N LT E+ + R Sbjct: 7 SRVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVF 63 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144 +++ + P L F EAVH+ ++ I ++L L D + Sbjct: 64 TGLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDD 123 Query: 145 LFNMYREVPSITAKANWALQYTQT 168 + E + K++ L+Y Q Sbjct: 124 AYRWSEENTYLQKKSDIILRYYQD 147 >gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 326 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ ++D E + R +++ ++ Sbjct: 28 EVWDRLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVS 84 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + P + KA Sbjct: 85 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFDWSEKNPHLQRKAQI 144 Query: 162 ALQYTQ 167 L Y + Sbjct: 145 VLDYYE 150 >gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] Length = 337 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R + ++ E + N W+P ++P+ +D+ W N LT E+ + R Sbjct: 22 SRVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVF 78 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144 +++ + P L F EAVH+ ++ I ++L L D + Sbjct: 79 TGLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDD 138 Query: 145 LFNMYREVPSITAKANWALQYTQT 168 + E + K++ L+Y Q Sbjct: 139 AYRWSEENTYLQKKSDIILRYYQD 162 >gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus jostii RHA1] gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1] Length = 321 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT E+ + R +++ ++ Sbjct: 23 EVWDRLVGNFWLPEKVPVSNDIPSW---GTLTPQEKQLTMRVFTGLTLLDTIQGTVGAVS 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L D + F E P++ KA Sbjct: 80 LIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEI 139 Query: 162 ALQYTQ 167 + Y Q Sbjct: 140 VMDYYQ 145 >gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 323 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 5/156 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ WK LT++E+ + R Sbjct: 13 NWNRMQDDKDLEIWNRLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ A+ P L AF EAVH+ ++ + +++ E F Sbjct: 70 DTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEAFRWAD 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 E P + KA L+ P L Sbjct: 130 ENPLLQKKAQLVLEDYLAQGDPLKKKVASVFLESFL 165 >gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis AD011] gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium animalis subsp. lactis AD011] gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis V9] Length = 321 Score = 78.7 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ ++D E + R +++ ++ Sbjct: 23 EVWDRLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVS 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + P + KA Sbjct: 80 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFDWSEKNPHLQRKAQI 139 Query: 162 ALQYTQ 167 L Y + Sbjct: 140 VLDYYE 145 >gi|226312721|ref|YP_002772615.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacillus brevis NBRC 100599] gi|226095669|dbj|BAH44111.1| ribonucleoside-diphosphate reductase beta chain [Brevibacillus brevis NBRC 100599] Length = 316 Score = 78.7 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 6/150 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W L+ ER K+ LG +++ + I Sbjct: 17 FWNQNIMQFWTDDEIPLSDDKMAW---MELSATERDTYKKVLGGLTLLDTVQGGVGMPKI 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L E +H+ ++ I T+L E +F+ P + KA Sbjct: 74 MEHVDGLQRKAVLAFMGMMEQIHAKSYSSIFTTLASTEEIDGIFSWVENNPHLQKKAALI 133 Query: 163 LQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + Q + P Y S L L + Sbjct: 134 SKRYQEIEKPKDLYMAMVA-SVFLESYLFY 162 >gi|66391516|ref|YP_239041.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43] gi|62288604|gb|AAX78587.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43] Length = 391 Score = 78.7 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 3/163 (1%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+ + +++ + V + K+ + W P EV + D Sbjct: 2 LTVMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFETLTEKQLSFFWRPEEVDLSIDRM 61 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + + E+++ NL + +++ LA S+ ++ AF E + Sbjct: 62 QYAK---MPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 118 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 HS ++ +I +L +D + F+ +I ++ +Y L Sbjct: 119 HSRSYTHIQRNLHIDPAKEFDKILRNEAIMKRSASMTKYYDDL 161 >gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] Length = 324 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 5/142 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + L DER + R L Sbjct: 15 NWNRIQDDKDLEVWNRLTVNFWLPEKVPLSNDVQSWAT---LKPDERTLTIRVLTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L AF EAVH+ ++ I ++L + + F Sbjct: 72 DTIQNTVGAPSLMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTKEVDDAFRWSE 131 Query: 151 EVPSITAKANWALQYTQTLSSP 172 + P + AK+ LQ + P Sbjct: 132 DNPHLQAKSRLILQEYNATADP 153 >gi|10957415|ref|NP_051641.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus radiodurans R1] gi|6460844|gb|AAF12548.1|AE001826_17 ribonucleoside-diphosphate reductase, beta chain [Deinococcus radiodurans R1] Length = 354 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 18/190 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH------------WMPTEVPMQDD 64 VN+ R+ + +N +P+ ++ + +N W P E+P+ +D Sbjct: 4 VNIQPDRVFGSPQPINNEVPMT-PFSAANWSEPEDNFSATFYAKYTSQLWFPEEIPLTND 62 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 WK+ L+D+ER + ++L + + + + L Q E Sbjct: 63 ALAWKT---LSDEERWTYIHASAGLNALDTLQGEVGMPRLRDLVDGHIRKATLQFQGMME 119 Query: 125 AVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRR 182 +H+ ++ + + +E E+F R P + K + W K Sbjct: 120 DIHARSYSLMNKTFLTASEEREVFEWVRTQPQLQHKIAVIQGVYRDPDVSDLGVWKKLVV 179 Query: 183 SRILTRSLRF 192 S +L +L + Sbjct: 180 SCMLETALFY 189 >gi|32453719|ref|NP_861928.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage RB69] gi|32350538|gb|AAP76137.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage RB69] Length = 390 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 3/117 (2%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 46 FWRPEEVNLMLDSAQF---NKLPQFQQDICTNNLKYQSLLDSIQGRAPSAVLMALISDPS 102 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ F E +HS ++ +I+ +L D ++F+ +I +A +Y + Sbjct: 103 LDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDV 159 >gi|194015457|ref|ZP_03054073.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] gi|194012861|gb|EDW22427.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] Length = 329 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK LT ER + L ++ N + AI Sbjct: 26 FYDQNVKQFWLPEEISLNGDLLAWKD---LTPAERDTYMKVLAGLTLLDTEQGNTGMPAI 82 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E +F +E + KA Sbjct: 83 MAHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPSETITAVFEWVKENRYLQRKAKL 142 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 143 ITDLYRDIKAGDDISLYKAMVASVYLESFLFY 174 >gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] Length = 334 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W N LT+ E+ + R +++ ++ Sbjct: 36 EVWDRLTGNFWLPEKVPVSNDIPSW---NTLTEYEKQLTMRVFTGLTLLDTIQGTVGAVS 92 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + + P L AF E+VH+ ++ I ++L + E F E + KA Sbjct: 93 LIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENDQLQRKAQI 152 Query: 162 ALQYTQ 167 + Y + Sbjct: 153 VMDYYR 158 >gi|34419511|ref|NP_899524.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio phage KVP40] gi|34333192|gb|AAQ64347.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio phage KVP40] Length = 374 Score = 78.3 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 65/162 (40%), Gaps = 3/162 (1%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 I K ++ L ++++ +K+G + + W P EV + D Sbjct: 3 KTIFNKNKVDHLGQPLFLGEDPNISRFETVKHGVFEQLTEKQLSFFWRPEEVDLTLDSQE 62 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + + + + + + +NL + + +S+ +A S+ ++ F E +H Sbjct: 63 F---DRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNSLENWITTWDFSETIH 119 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 S ++ +I+ +L + +F+ SI A+A ++ L Sbjct: 120 SRSYTHIMRNLYSNPSAVFDEIVLDKSIMARAEAVTEHYDKL 161 >gi|56964873|ref|YP_176604.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus clausii KSM-K16] gi|56911116|dbj|BAD65643.1| ribonucleoside-diphosphate reductase beta chain [Bacillus clausii KSM-K16] Length = 334 Score = 78.0 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P EV + DL WK LT E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEVALNGDLLTWK---YLTPAEKDTYMKVLAGLTLLDTEQGNTGMPLV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E +LF + P + KAN Sbjct: 78 AEHVQGHQRKAVLNFMAMMENAVHAKSYSNIFMTLATSEEINDLFEWVKVNPRLQKKANT 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 138 IVSIYKDIKRGDDISLFKALVASVYLESFLFY 169 >gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 322 Score = 78.0 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ WK+ L +DE+ M R Sbjct: 13 NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P AF E+VH+ ++ + ++L E E F Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSE 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E + KA+ L Y + P L S + Sbjct: 130 ENEYLQKKAHIVLDYYHG-NDPEKRKVASTMLESFLFYSGFYA 171 >gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 319 Score = 78.0 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D ++ Sbjct: 67 DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSE 126 Query: 151 EVPSITAKANWALQYTQT 168 E S+ KAN L+Y Q Sbjct: 127 ECESLQRKANLVLEYYQA 144 >gi|152964774|ref|YP_001360558.1| ribonucleotide-diphosphate reductase subunit beta [Kineococcus radiotolerans SRS30216] gi|151359291|gb|ABS02294.1| Ribonucleoside-diphosphate reductase [Kineococcus radiotolerans SRS30216] Length = 323 Score = 78.0 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 5/149 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +K L R + L+ E + +N W+P +VP+ +D+ W++ L ER Sbjct: 2 EKLKLVDRVNAINWNRLQDDKDLEIWNRLTSNFWLPEKVPLSNDVQSWQN---LGAQERT 58 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R +++ +++ P AF E+VH+ ++ I ++L Sbjct: 59 LTLRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSSIFSTLAT 118 Query: 141 DE--GELFNMYREVPSITAKANWALQYTQ 167 E F + ++ KA+ L+Y Sbjct: 119 TREIDEAFAWSEDNEALQRKASIVLEYYH 147 >gi|311993225|ref|YP_004010091.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31] gi|284178063|gb|ADB81729.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31] Length = 379 Score = 78.0 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A ++ L ++ + NL + + +S+ Sbjct: 20 RHRTFEELIEKQLSFFWRPEEVNLMTDRAQFEK---LPVGQQNVFLDNLKYQSLLDSIQG 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P + F E +HS ++ +I+ +L D ++F+ +I Sbjct: 77 RAPAAVLSALISDPSLDTWNQTWTFSETIHSRSYTHIMRNLLNDPAKVFDEIVLDEAIMK 136 Query: 158 KANWALQYTQTL 169 +A Y + Sbjct: 137 RAETIGHYYDDV 148 >gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] Length = 348 Score = 78.0 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 16/157 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--- 98 +EKY S W P E+P+ +D +WKS L++ ER + ++L Sbjct: 24 FYEKYTSQL---WFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGLNALDTLQGEVGM 77 Query: 99 -NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSI 155 + + H+ + Q E +H+ ++ + + +E E+F R P + Sbjct: 78 PALRHLVDGHIRKATIQ----FQGMMEDIHAKSYSLMNKTFLTTSEEREVFEWVRTQPQL 133 Query: 156 TAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 K + + W K S +L +L + Sbjct: 134 QNKIAMIREIYDNPDVSNLGLWKKMVVSCMLETALFY 170 >gi|317506846|ref|ZP_07964618.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] gi|316254774|gb|EFV14072.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] Length = 332 Score = 78.0 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 9/163 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + P++ + D +++ A + E + N W+P +VP+ +D+ Sbjct: 1 MHPLETESSQKAPDKVKLVRA----INWNRVVDEKDSEVWDRLVGNFWLPEKVPLSNDIQ 56 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W + L + E+ + R +++ +++ P AF E+V Sbjct: 57 SWHT---LNEHEQQLTMRVFTGLTLLDTIQGAVGAVSLIPDALTPHEEAVYTNIAFMESV 113 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 H+ ++ I ++L E F E P++ KA L+ + Sbjct: 114 HAKSYSSIFSTLSNTPEIDEAFRWSEENPNLQRKAAIVLERYR 156 >gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] Length = 320 Score = 77.6 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 6/163 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +DL WK+ LT DE+LM R Sbjct: 11 NWNKIQDDKDLEVWDRLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 ++L +++ P AF E+VH+ ++ I ++L E E F Sbjct: 68 DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E ++ KA Y + P L S + Sbjct: 128 ENEALQKKAEIVKSYYDG-NDPEKRKVASTMLESFLFYSGFYA 169 >gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 324 Score = 77.6 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 6/152 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L + E+ M R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + E F E ++ KA Sbjct: 83 LIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENENLQRKARI 142 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L Y + P L S + Sbjct: 143 ILDYYRG-DDPEKRKVASTMLESFLFYSGFYA 173 >gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 324 Score = 77.6 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 6/152 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L + E+ M R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + E F E ++ KA Sbjct: 83 LIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENENLQRKARI 142 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L Y + P L S + Sbjct: 143 ILDYYRG-DDPEKRKVASTMLESFLFYSGFYA 173 >gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 322 Score = 77.6 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 5/161 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ WK+ L +DE+ M R Sbjct: 13 NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P AF E+VH+ ++ + ++L E E F Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSE 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLR 191 E + KA+ L Y S + S + Sbjct: 130 ENEYLQKKAHIVLDYYHGNDSEKRKVASTMLESFLFYSGFY 170 >gi|76803441|ref|YP_327710.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas pharaonis DSM 2160] gi|76559256|emb|CAI50863.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas pharaonis DSM 2160] Length = 336 Score = 77.6 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 5/149 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y + + N++W+ TE D+ +++ T E+ +IKR + Sbjct: 17 SERTQLKPYEYADFLDYKDAIRNSYWVHTEFNFSGDVQDFRTNT--TPAEKTVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E V IY + E + A E H + +++ LG+ E F Sbjct: 75 IAQIEVQVKTFWAD-IYDEMPKTEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFHYW 177 +VP+I + + +Y + S + Sbjct: 132 VTDVPAIEDRIEYLDKYLEKSESDDKQEY 160 >gi|326333061|ref|ZP_08199312.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae bacterium Broad-1] gi|325949135|gb|EGD41224.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae bacterium Broad-1] Length = 334 Score = 77.6 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 Y A + + W E+P+++D + +TD E+ +K L F E ++ Sbjct: 20 FDYPMAEDLAKKQRSIFWTAEEIPVENDKQDF--LVNMTDAEQAAVKTTLKLFTIYELIL 77 Query: 97 -ANNIVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 ++ PE + +F E +H+ + + +L +D E ++ Y+ P Sbjct: 78 GGEVWGDRLFHAFPRPEIQMMTNAFSFAELNMHAPFYAKLNKTLMIDTEEFYDSYKNDPV 137 Query: 155 ITAKANWA 162 + + + Sbjct: 138 LAERIAFV 145 >gi|257373022|ref|YP_003175796.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286] gi|257167746|gb|ACV49438.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286] Length = 336 Score = 77.6 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 13/164 (7%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y E + N++W+ TE D+ +K T E+ +IKR + Sbjct: 17 SERTQLKPYEYPDVLEYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKAVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E V IY + E + A E H + +++ LG+ E F Sbjct: 75 IAQIEVQVKTFWAD-IYDEMPKAEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +VP+I + ++ +Y + S + L F Sbjct: 132 VTDVPAIEERIDYLDEYLEKSES--------DDTQEYVMSLLLF 167 >gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort] gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort] Length = 349 Score = 77.6 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 9/157 (5%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + A + W+P + + D++ W N LTD E+ K+ L ++ + + Sbjct: 30 ANNFWELATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQSVEGM 86 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAK 158 I H Q F E++H+ ++ +I T+L L++ + + P + K Sbjct: 87 SLIAHHEPRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPHLKKK 146 Query: 159 ANWALQYTQTLSSP---SFHYWNKRRRSRILTRSLRF 192 A + + + L P +F + + S L +L + Sbjct: 147 AQYIGYFYEKLEQPNPSTFDRYMAKVASAFLESALFY 183 >gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] Length = 324 Score = 77.6 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 L+ E + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 11 PRAINWNRLQDDKDLEVWNRLTVNFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTG 67 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELF 146 +++ A+ P L AF EAVH+ ++ I ++L + E F Sbjct: 68 LTLLDTIQNAVGAPAMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAF 127 Query: 147 NMYREVPSITAKA 159 E P + AKA Sbjct: 128 RWSDENPHLQAKA 140 >gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus opacus B4] gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus B4] Length = 321 Score = 77.6 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT E+ + R +++ ++ Sbjct: 23 EVWDRLVGNFWLPEKVPVSNDIPSW---GTLTAQEKQLTMRVFTGLTLLDTIQGTVGAVS 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L D + F E P++ KA Sbjct: 80 LIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEI 139 Query: 162 ALQYTQ 167 + Y Q Sbjct: 140 VMDYYQ 145 >gi|261820460|ref|YP_003258566.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium wasabiae WPP163] gi|261604473|gb|ACX86959.1| Ribonucleoside-diphosphate reductase [Pectobacterium wasabiae WPP163] Length = 320 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---GTLNPRERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149 +++ + P L +F EAVH+ ++ I ++L L E+ + Y Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWS 126 Query: 150 REVPSITAKANWALQYTQT 168 E P++ K++ L + ++ Sbjct: 127 EENPALQKKSDIILSHYRS 145 >gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] Length = 324 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 6/163 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + N W+P ++P+ +D+ W N L E+LM R Sbjct: 15 NWNKIIDEKDQEVWDRLTGNFWLPEKIPLSNDIQSW---NTLKPHEQLMTTRVFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 72 DTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFRWSE 131 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E P + KA L Y + P L S + Sbjct: 132 ENPYLQKKAQIVLDYYRG-DDPEKRKVASTMLESFLFYSGFYA 173 >gi|319645694|ref|ZP_07999925.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] gi|317392241|gb|EFV73037.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] Length = 330 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L D E+ + L ++ N + I Sbjct: 24 FYEQNVKQFWLPEEISLNGDLLTWKH---LGDKEKDTYMKVLAGLTLLDTEQGNTGMPTI 80 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E ELF + + KA Sbjct: 81 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTEKITELFEWVKTNRYLQRKAAI 140 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + K + + S F Sbjct: 141 IGGLYNAIEAGDDISLYKAMVASVYLESFLFY 172 >gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 323 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYNN 148 >gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 323 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYNN 148 >gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 323 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYNN 148 >gi|221316490|ref|ZP_03598295.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 347 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 67/177 (37%), Gaps = 8/177 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +RM + S + + +E W+P EV M D W + + + E+ + Sbjct: 20 ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYR-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +G A +S+ + ++ + + + A E +H+ ++ YI++S+ Sbjct: 78 FLNAIGILAVLDSIAT--YFDNVAAYYIRDSAIKALMAFVAAMETIHNESYTYILSSVSS 135 Query: 141 DEGEL--FNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 L F ++ + + + + + + +P+ + K + L F+ Sbjct: 136 KAVSLDVFERPKKNEFMIRRNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCFVN 192 >gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] Length = 325 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 6/152 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L + E+ M R +++ ++ Sbjct: 27 EVWDRLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVS 83 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + E F E ++ KA Sbjct: 84 LIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENANLQRKARI 143 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L Y + P L S + Sbjct: 144 ILDYYRG-DDPEKRKVASTMLESFLFYSGFYA 174 >gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20] Length = 324 Score = 77.2 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 6/152 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L + E+ M R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + E F E ++ KA Sbjct: 83 LIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENANLQRKARI 142 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L Y + P L S + Sbjct: 143 ILDYYRG-DDPEKRKVASTMLESFLFYSGFYA 173 >gi|323650974|ref|YP_004243617.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto] gi|323461614|dbj|BAJ77030.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto] Length = 347 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 67/177 (37%), Gaps = 8/177 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +RM + S + + +E W+P EV M D W + + + E+ + Sbjct: 20 ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYR-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +G A +S+ + ++ + + + A E +H+ ++ YI++S+ Sbjct: 78 FLNAIGILAVLDSIAT--YFDNVAAYYIRDSAIKALMAFVAAMETIHNESYTYILSSVSS 135 Query: 141 DEGEL--FNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 L F ++ + + + + + + +P+ + K + L F+ Sbjct: 136 KAVSLDVFERPKKNEFMIRRNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCFVN 192 >gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna] gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna] Length = 322 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + NN W+P ++P+ +D+ W LT++ERL+ R +++ ++ Sbjct: 24 EVWNRLTNNFWLPEKIPVSNDVQSWHQ---LTEEERLITMRVFTGLTMLDTIQGTVGAVS 80 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + F E ++ KA Sbjct: 81 LIPDAITPHEEAVYTNIAFMESVHARSYSNIFSTLCSTKEIDAAFRWSEENANLQKKAEI 140 Query: 162 ALQYTQ 167 L Y Sbjct: 141 VLSYYN 146 >gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] Length = 321 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W LT E+ + R +++ ++ Sbjct: 23 EVWDRLVSNFWLPEKVPVSNDIPSW---GTLTAQEQQLTMRVFTGLTLLDTIQGTVGAVS 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L D + F E P++ KA Sbjct: 80 LIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFRWSEENPNLQRKAQI 139 Query: 162 ALQYTQ 167 L Y Sbjct: 140 VLDYYN 145 >gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] Length = 326 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 5/153 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + + +L ++ ++ E + +N W+P +VP+ +D+ WK+ LT Sbjct: 1 MTTEQVELLRHPAEAINWNRVQDEKDTEVWDRLTSNFWLPEKVPLSNDVQSWKT---LTA 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ + + +++ +++ AF E+VH+ ++ I + Sbjct: 58 EEQDLTMKVFTGLTLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSSIFS 117 Query: 137 SLG--LDEGELFNMYREVPSITAKANWALQYTQ 167 +L E F +E + KA+ L+Y + Sbjct: 118 TLSSMKQIDEAFRWSKENEHLQRKADIVLRYYK 150 >gi|311068263|ref|YP_003973186.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus atrophaeus 1942] gi|310868780|gb|ADP32255.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus atrophaeus 1942] Length = 328 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 ADHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKFLQKKAQI 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + Q++ K + + S F Sbjct: 138 IVGLYQSIKKDDEISLFKAMVASVYLESFLFY 169 >gi|295097265|emb|CBK86355.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 319 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 5/140 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ + ++L D + Sbjct: 67 DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSVFSTLCQTRDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLS 170 E S+ KA+ L+Y + Sbjct: 127 ESASLQRKADLVLEYYRADE 146 >gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit [Mycobacterium abscessus] Length = 324 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W N LTD E+ + R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIQSW---NTLTDHEKQLTMRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + F E P++ KA Sbjct: 83 LIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENPNLQRKAEI 142 Query: 162 ALQYTQ 167 ++Y + Sbjct: 143 VMEYYR 148 >gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] Length = 322 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ WK+ L DE+LM R Sbjct: 13 NWNDIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNADEKLMTNRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P AF E+VH+ ++ I ++L E E F Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFQWSE 129 Query: 151 EVPSITAKANWALQYTQ 167 + KA+ L Y Sbjct: 130 NNEFLQKKAHIVLDYYH 146 >gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 319 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 5/140 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNHIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D ++ Sbjct: 67 DTIQNTVGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126 Query: 151 EVPSITAKANWALQYTQTLS 170 E S+ KAN L Y Q Sbjct: 127 ESESLQRKANLVLDYYQADE 146 >gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter arilaitensis Re117] gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter arilaitensis Re117] Length = 324 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 5/151 (3%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +K L + + ++ E + NN W+P +VP+ +D+ W LT+DE Sbjct: 1 MTEKIQLTNKVEAINWNRIQDDKDVEVWNRLVNNFWLPEKVPLSNDIQSW---GTLTEDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +L+ R ++L +++ P AF E+VH+ ++ I ++L Sbjct: 58 KLLTMRVFTGLTLLDTLQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117 Query: 139 --GLDEGELFNMYREVPSITAKANWALQYTQ 167 + E F E ++ KA Y Sbjct: 118 ASTKEIDEAFRWSTENVNLQKKAQIIESYYH 148 >gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 335 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + LT +E+ + R +++ ++ Sbjct: 37 EVWDRLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVS 93 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + F E P++ KA Sbjct: 94 LIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQI 153 Query: 162 ALQYTQ 167 L Y + Sbjct: 154 VLDYYK 159 >gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 323 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W N LT E+ + R Sbjct: 14 NWNRIQDDKDLEVWNRLTTNFWLPEKVPLSNDINSW---NTLTATEKKLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L D E + Sbjct: 71 DTIQNTVGAPCLMADAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYT 166 E ++ KA L Y Sbjct: 131 ENSALQNKAKIILSYY 146 >gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18] gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18] Length = 325 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 5/149 (3%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + ++++ + ++ E + N W+P +VP+ +D+ WK+ LT++E+ Sbjct: 3 EKVKLVDHAVEAINWNRIEDEKDLEVWDRLTGNFWLPEKVPLSNDVPSWKT---LTEEEK 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL- 138 + R +++ +++ AF E+VH+ ++ I ++L Sbjct: 60 QLTMRVFTGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLA 119 Query: 139 -GLDEGELFNMYREVPSITAKANWALQYT 166 + E F E + KA L Y Sbjct: 120 STKEIDEAFRWASENEHLQKKAKIVLSYY 148 >gi|258544274|ref|ZP_05704508.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium hominis ATCC 15826] gi|258520512|gb|EEV89371.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium hominis ATCC 15826] Length = 325 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 5/140 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 Q+ P +Y E + +++W+ TE D+ +K+ +T ER + R + Sbjct: 7 ERRIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--VITPRERTALTRAMLA 64 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 + E V +YR+ PE A E H + +++ LG+ E+F+ Sbjct: 65 ISQVEVSVKRFWGD-LYRYFPKPEIDDVGGTFAESEIRHKDAYSFLLEKLGM--NEMFSQ 121 Query: 149 YREVPSITAKANWALQYTQT 168 E P++ + + + + Sbjct: 122 ITEYPALMRRIEYMEDFMRD 141 >gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S] gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S] Length = 329 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + LT +E+ + R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + F E P++ KA Sbjct: 88 LIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQI 147 Query: 162 ALQYTQ 167 L Y + Sbjct: 148 VLDYYK 153 >gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 320 Score = 76.0 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---STLNARERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149 +++ + P L +F EAVH+ ++ I ++L L E+ + Y Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWS 126 Query: 150 REVPSITAKANWALQYTQT 168 E P++ K++ L + ++ Sbjct: 127 EENPALQKKSDIILSHYRS 145 >gi|268590425|ref|ZP_06124646.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] gi|291314339|gb|EFE54792.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] Length = 323 Score = 75.7 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N LT E+ + R Sbjct: 14 NWNRIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NTLTAAEKQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L +D + + Sbjct: 71 DTIQNTVGAPCLMPDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYT 166 E ++ KA L Y Sbjct: 131 ENNALQNKAKIILSYY 146 >gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] Length = 323 Score = 75.7 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAMTPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYHN 148 >gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. MCS] gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. KMS] gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. JLS] Length = 320 Score = 75.7 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W N LT E+ + R +++ ++ Sbjct: 22 EVWDRLTGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTLLDTIQGTVGAVS 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 79 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 137 Query: 161 WALQYTQ 167 +QY + Sbjct: 138 IVMQYYK 144 >gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus denitrificans PD1222] gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Paracoccus denitrificans PD1222] Length = 329 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L +ER + R +++ A Sbjct: 31 EVWNRLTVNFWLPEKVPLSNDVQSWAT---LRPEERELTIRVFTGLTLLDTIQNTVGAPA 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF EAVH+ ++ I ++L L F E P + KA Sbjct: 88 MMPDALTPHEEAVLSNIAFMEAVHARSYSSIFSTLCLTPEVDAAFRWAEENPHLQQKARL 147 Query: 162 ALQYTQTLSSP 172 L+ + S P Sbjct: 148 VLEEYKAGSDP 158 >gi|311992967|ref|YP_004009834.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj61] gi|295815256|gb|ADG36182.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj61] Length = 377 Score = 75.3 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 9/163 (5%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + A + W P E+ + D + +K L ++ NL + A +++ Sbjct: 32 KHPTIENLTVQALSFFWRPEEINLTTDSSQFKK---LHPRDQRTFTLNLLYQAIMDTVQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + S+ ++ F E +HS ++ +II +L + E+F+ I A Sbjct: 89 SAPSEILGPICSDIGLDTWIQTWTFFETIHSRSYTHIIRNLYNNPTEIFDSVVLDDQIMA 148 Query: 158 KANWALQYTQTLS------SPSFHYWNKRRRSRILTRSLRFLC 194 +A +Y L S + +LC Sbjct: 149 RAASICKYYDELEIKWTLYSADKIRGIATEEQLYELKKAFYLC 191 >gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 324 Score = 75.3 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + LTD+E+ + R +++ ++ Sbjct: 26 EVWHRLTGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P L AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 83 LIPDAVTPHEEAVLTNIAFMESVHAKSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAA 141 Query: 161 WALQYTQ 167 +QY + Sbjct: 142 IVMQYYR 148 >gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 75.3 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W N LT E+ + R +++ ++ Sbjct: 22 EVWDRLTGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTLLDTIQGTVGAVS 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 79 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TSEIDDAFRWSEENPNLQRKAE 137 Query: 161 WALQYTQ 167 +QY + Sbjct: 138 IVMQYYK 144 >gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium atrosepticum SCRI1043] Length = 320 Score = 75.3 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---STLNTRERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149 +++ + P L +F EAVH+ ++ I ++L L E+ + Y Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWS 126 Query: 150 REVPSITAKANWALQYTQT 168 E P++ K++ L + ++ Sbjct: 127 EENPALQKKSDIILSHYRS 145 >gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] Length = 333 Score = 75.3 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LTD E+ + R +++ ++ Sbjct: 35 EVWDRLTGNFWLPEKVPVSNDIPSW---GTLTDYEKTLTMRVFTGLTLLDTIQGTVGAIS 91 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + E F E + KA Sbjct: 92 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENEYLQRKAQI 151 Query: 162 ALQYTQ 167 + Y + Sbjct: 152 VMDYYR 157 >gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9] gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9] Length = 203 Score = 75.3 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 63/159 (39%), Gaps = 6/159 (3%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N ++R ++ + + + + W T VP+ +DL W++ L Sbjct: 1 MNETERRAKAGVYKAINWNEIEDNYDKQTWEKLNSQFWTATRVPVSNDLDDWRT---LDP 57 Query: 77 DERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + + + G ++L + + ++ + +P R L F EA+H+ ++ I Sbjct: 58 VAKDLYGKVFGGLTLLDTLQSQDGMLSLLNNETQSPHMRAVLSNMLFMEAIHAQSYSTIF 117 Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSP 172 ++L + +F+ + KA+ + Q + P Sbjct: 118 STLMTPQEIANVFDFTHTNEHLQKKAHLINEVYQNGTVP 156 >gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] Length = 325 Score = 75.3 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ WK+ LT++E+ + R Sbjct: 16 NWNRIEDEKDLEVWDRLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGLTLL 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ +++ AF E+VH+ ++ I ++L + E F Sbjct: 73 DTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWAA 132 Query: 151 EVPSITAKANWALQYT 166 E + KA L Y Sbjct: 133 ENEHLQKKAKIVLSYY 148 >gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium gilvum PYR-GCK] Length = 320 Score = 75.3 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W N LT E+ + R +++ ++ Sbjct: 22 EVWDRLTGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTLLDTIQGTVGAVS 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 79 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TSEIDDAFRWSEENPNLQRKAE 137 Query: 161 WALQYTQ 167 +QY + Sbjct: 138 IVMQYYK 144 >gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] Length = 323 Score = 75.3 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYHN 148 >gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 322 Score = 75.3 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P ++P+ +DLA W + LTD ER M R ++ A V Sbjct: 24 EVWDRLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVA 80 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I ++ P L AF E+VH+ ++ I ++L F P + KA Sbjct: 81 MIADAVT-PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFEWSERNPHLQRKAQ 139 Query: 161 WALQYTQ 167 + Y + Sbjct: 140 IVVDYYR 146 >gi|313206313|ref|YP_004045490.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868] gi|312445629|gb|ADQ81984.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868] gi|315023179|gb|EFT36190.1| ribonucleotide reductase [Riemerella anatipestifer RA-YM] gi|325336242|gb|ADZ12516.1| ribonucleoside-diphosphate reductase beta chain [Riemerella anatipestifer RA-GD] Length = 324 Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 5/143 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +EV D+ + S L E+ +K L A Sbjct: 7 RINYKPFEYPEVMQYIEAINKSFWVHSEVDFTADIQDFHS--QLEPHEKNAVKNALLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y HL PE A E HS + ++ LG + E N+ Sbjct: 65 QIEVSVKTFWG-NLYNHLPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYN-NEFLNVIE 122 Query: 151 EVPSITAKANWALQYTQTLSSPS 173 P+I + ++ + +S + Sbjct: 123 N-PAIRKRIDFLTDVLRNSNSST 144 >gi|154686152|ref|YP_001421313.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens FZB42] gi|154352003|gb|ABS74082.1| NrdF [Bacillus amyloliquefaciens FZB42] Length = 329 Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 138 IVGLYKAIQKDDEISLFKAMVASVYLESFLFY 169 >gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus equi 103S] gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus equi 103S] Length = 322 Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P ++P+ +DLA W + LTD ER M R ++ A V Sbjct: 24 EVWDRLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVA 80 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I ++ P L AF E+VH+ ++ I ++L F P + KA Sbjct: 81 MIADAVT-PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFEWSERNPHLQRKAQ 139 Query: 161 WALQYTQ 167 + Y + Sbjct: 140 IVVDYYR 146 >gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] Length = 330 Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ + + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 21 NWNKIEDDKDLDVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 77 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 78 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 137 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 138 ENGPLQKKADIILQHYHN 155 >gi|255023762|ref|ZP_05295748.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J1-208] Length = 284 Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 K L++ E+ +G A+ +S I I ++++P A +E + Sbjct: 1 DAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVI 59 Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRS 183 H+ ++ Y++ S+ ++ +F + R P+I + + Y +++ + K Sbjct: 60 HNESYSYVLASITNLQEQNRVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQ 119 Query: 184 RILTRSLRFL 193 + + F Sbjct: 120 SSILEGINFY 129 >gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium vanbaalenii PYR-1] Length = 324 Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W N LT E+ + R +++ ++ Sbjct: 26 EVWERLTGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 83 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 141 Query: 161 WALQYTQ 167 +QY + Sbjct: 142 IVMQYYK 148 >gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] Length = 323 Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYHN 148 >gi|172041159|ref|YP_001800873.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] gi|171852463|emb|CAQ05439.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] Length = 331 Score = 74.9 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L D E+ R +++ ++ Sbjct: 33 EVWDRLTANFWLPEKVPVSNDIQSWAT---LNDAEKNATMRVFTGLTMLDTIQGTVGAVS 89 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + L AF E+VH+ ++ I +L + F E ++ K Sbjct: 90 LIPEATTMHEEAVLTNIAFMESVHAKSYSQIFMTLASTREINDAFRWSEENENLQRKGEI 149 Query: 162 ALQYTQ 167 LQY + Sbjct: 150 ILQYYK 155 >gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein [Pelagibaca bermudensis HTCC2601] gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein [Roseovarius sp. HTCC2601] Length = 326 Score = 74.9 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 5/146 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 L+ E + N W+P +VP+ +D+ W + LT++ER + R Sbjct: 13 PRAINWNRLQDEKDLEVWNRLTVNFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTG 69 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELF 146 +++ + A+ P L AF EAVH+ ++ I ++L + E F Sbjct: 70 LTLLDTIQNSVGAPAMMPDCLTPHEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAF 129 Query: 147 NMYREVPSITAKANWALQYTQTLSSP 172 E P + AKA L+ + P Sbjct: 130 RWSDENPHLQAKARAVLETYAPEADP 155 >gi|16078802|ref|NP_389621.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221309618|ref|ZP_03591465.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221313941|ref|ZP_03595746.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318864|ref|ZP_03600158.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221323136|ref|ZP_03604430.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. SMY] gi|321315508|ref|YP_004207795.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis BSn5] gi|1710395|sp|P50621|RIR2_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1154633|emb|CAA92811.1| NrdF [Bacillus subtilis subsp. subtilis str. 168] gi|2634123|emb|CAB13623.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus subtilis subsp. subtilis str. 168] gi|116733911|gb|ABK20014.1| ribonucleotide-diphosphate reductase beta [synthetic construct] gi|291484287|dbj|BAI85362.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto BEST195] gi|320021782|gb|ADV96768.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis BSn5] Length = 329 Score = 74.9 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 138 IVGLYKAIQKDDEISLFKAMVASVYLESFLFY 169 >gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 74.9 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] Length = 329 Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +DL WK+ LT E+LM R Sbjct: 20 NWNKIQDEKDLEVWDRLTGNFWLPEKVPLSNDLPSWKT---LTKGEQLMTNRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 ++L +++ P AF E+VH+ ++ I ++L E E F Sbjct: 77 DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 136 Query: 151 EVPSITAKANWALQYTQ 167 E ++ KA Y Sbjct: 137 ENAALQKKAEIIKSYYD 153 >gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium linens BL2] Length = 326 Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT++E+ + R +++ +++ P Sbjct: 36 NFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAVTP 92 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 + AF E+VH+ ++ I ++L + E F RE + +KA+ L Y + Sbjct: 93 HEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSYYR 150 >gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] Length = 323 Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + NN W+P +VP+ +D+ W + LTD+ERL+ R Sbjct: 14 NWNRIQDEKDVEVWNRLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P L AF E+VH+ ++ I ++L E F R Sbjct: 71 DTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEAFRWSR 130 Query: 151 EVPSITAKA 159 E ++ AKA Sbjct: 131 ENRNLQAKA 139 >gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum NCC2705] gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium longum NCC2705] Length = 330 Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|94985875|ref|YP_605239.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus geothermalis DSM 11300] gi|94556156|gb|ABF46070.1| Ribonucleoside-diphosphate reductase [Deinococcus geothermalis DSM 11300] Length = 319 Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 5/116 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y+ W E+P+ D A W+ L+ ER R + ++L + + Sbjct: 19 FYIQQQAQLWFSEEIPIASDAADWR---ALSPAERTCYTRVSAGLNAMDTLQGEVGMPLL 75 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAK 158 + + + L AF E VH+ ++ + +E E F P + K Sbjct: 76 AAGEDDHQRKATLAMFAFMENVHARSYSMANKTFLSASEEREAFEWIEMQPHLQRK 131 >gi|291570483|dbj|BAI92755.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira platensis NIES-39] Length = 131 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMY 149 +S+ NI I ++ PE + Q +E +H+ ++QY+I ++ E +++ + Sbjct: 1 MDSIQTCNIP-YIKNSVTAPEVSLCMAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFW 59 Query: 150 REVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 R + + + Y Q + P+ + + L + F Sbjct: 60 RTDKVLRDRCEFIAGLYQQYVDDPTPENYFVSLMADYLLEGMYFYN 105 >gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 330 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] Length = 330 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] Length = 334 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LTD E+ + R +++ ++ Sbjct: 36 EVWDRLTGNFWLPEKVPVSNDIPSW---GTLTDYEKQLTMRVFTGLTLLDTIQGTVGAVS 92 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + P L AF E+VH+ ++ I ++L + F E + KA Sbjct: 93 LIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENEQLQRKAQI 152 Query: 162 ALQYTQ 167 + + + Sbjct: 153 VMDFYR 158 >gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68] gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis 157F] gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. longum F8] gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68] gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|296330954|ref|ZP_06873429.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674472|ref|YP_003866144.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] gi|296151959|gb|EFG92833.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412716|gb|ADM37835.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] Length = 329 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 138 IVGLYKAIQKDDEISLFKAMVASVYLESFLFY 169 >gi|325973169|ref|YP_004250233.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma suis str. Illinois] gi|323651771|gb|ADX97853.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma suis str. Illinois] Length = 330 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ D +W+++ LT+ E+ + + L ++ + I Sbjct: 28 FWDQNVRQFWVDEEIPLSGDKLVWQAR--LTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + L A E +H+ ++ I +L E ELF ++ PS+ K + Sbjct: 86 CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145 Query: 163 LQYTQTLSSP 172 + Y + + Sbjct: 146 VSYYENIKDQ 155 >gi|311993498|ref|YP_004010363.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9] gi|295917455|gb|ADG60126.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9] Length = 379 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 3/146 (2%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + N+D + V + +K+ E + W P EV + D + + + Sbjct: 7 QAKFNIDQPMFFGPDTGVARYEIVKHQKFEELTTKQLSFFWRPEEVNLTTDKSQF---DK 63 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L ++ NLG+ +S+ + + S+ +++ F E +HS ++ + Sbjct: 64 LWAPYQIQFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETIHSRSYTH 123 Query: 134 IITSLGLDEGELFNMYREVPSITAKA 159 II +L D ++F+ I A+A Sbjct: 124 IIRNLFSDPSKIFDGVLANKEIMARA 149 >gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] Length = 323 Score = 74.5 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + NN W+P +VP+ +D+ W + LTD+ERL+ R Sbjct: 14 NWNRIQDEKDVEVWNRLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P L AF E+VH+ ++ I ++L E F R Sbjct: 71 DTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEAFRWSR 130 Query: 151 EVPSITAKA 159 E ++ AKA Sbjct: 131 ENRNLQAKA 139 >gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 325 Score = 74.5 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ W + L E+ M R Sbjct: 16 NWNRIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSW---STLKPHEQQMTTRVFTGLTLL 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P L AF E+VH+ ++ I ++L E E F Sbjct: 73 DTVQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFRWSE 132 Query: 151 EVPSITAKANWALQYTQ 167 E + KA L Y + Sbjct: 133 ENEYLQKKAKIILDYYR 149 >gi|227547058|ref|ZP_03977107.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212475|gb|EEI80364.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 330 Score = 74.5 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMHVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] Length = 323 Score = 74.5 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAK---LTAEEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E ++ KAN L++ Sbjct: 131 ENIALQKKANIILEHYNN 148 >gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 324 Score = 74.5 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W + LT E+ M R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 83 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 141 Query: 161 WALQYTQ 167 +QY + Sbjct: 142 IVMQYYK 148 >gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium longum DJO10A] gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum DJO10A] gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum DJO10A] Length = 330 Score = 74.5 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium avium 104] Length = 324 Score = 74.5 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W + LT E+ M R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 83 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 141 Query: 161 WALQYTQ 167 +QY + Sbjct: 142 IVMQYYK 148 >gi|325989612|ref|YP_004249311.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis KI3806] gi|323574697|emb|CBZ40353.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis] Length = 330 Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ D +W+++ LT+ E+ + + L ++ + I Sbjct: 28 FWDQNVRQFWVDEEIPLSGDKLVWQAR--LTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + L A E +H+ ++ I +L E ELF ++ PS+ K + Sbjct: 86 CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145 Query: 163 LQYTQTLSSP 172 + Y + + Sbjct: 146 VSYYENIKDQ 155 >gi|294338139|emb|CBJ93977.1| Probable ribonucleotide reductase (small subunit) [Campylobacter phage CP220] Length = 369 Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 6/141 (4%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 S + +KY + W EV D A + N L + + R Sbjct: 21 TGKNSQRYDV--IKYPIFETLFKKMAGFDWQEDEVQCTKDQADF---NVLNEAMKHSYTR 75 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLL-RQAFEEAVHSHTFQYIITSLGLDEG 143 L +S+ ++ I ++NPE + Q FE + HS ++ +I+ S+ + Sbjct: 76 VLNKLIFLDSIQGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYTHILRSVYANPS 135 Query: 144 ELFNMYREVPSITAKANWALQ 164 ++F+ E+P + A+ + Sbjct: 136 KIFDESFEIPELLELADSISK 156 >gi|291455662|ref|ZP_06595052.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium breve DSM 20213] gi|291382590|gb|EFE90108.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium breve DSM 20213] Length = 330 Score = 74.1 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ +T+DE + +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMHVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L E F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 330 Score = 74.1 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 11/163 (6%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ L+ E + N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV------SAINWNKLEDDKDLEVWDRLTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W++ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 H+ ++ I ++L E F+ E + KA L Y + Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYYE 154 >gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 324 Score = 74.1 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W + LT E+ + R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 83 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 141 Query: 161 WALQYTQ 167 +QY + Sbjct: 142 IVMQYYK 148 >gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] Length = 330 Score = 74.1 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 11/163 (6%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ L+ E + N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV------SAINWNKLEDDKDLEVWDRLTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W+ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWR---AMSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 H+ ++ I ++L E F+ E + KA L Y + Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYYE 154 >gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] Length = 319 Score = 74.1 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGVE 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 AI + P L F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 AIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFEWTNTNPYLQKKAE 135 >gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] Length = 319 Score = 74.1 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGVE 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 AI + P L F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 AIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFEWTNTNPYLQKKAE 135 >gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] Length = 320 Score = 74.1 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W + LT E+ M R +++ ++ Sbjct: 22 EVWDRLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGLTLLDTIQGTVGAVS 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 79 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 137 Query: 161 WALQYTQ 167 +QY + Sbjct: 138 IVMQYYK 144 >gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] Length = 326 Score = 74.1 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + NN W+P +VP+ +D+ W LTD E+ + R +++ ++ Sbjct: 28 EVWNRLVNNFWLPEKVPVSNDIPSW---GTLTDVEKTLTMRVFTGLTLLDTIQGTVGAVS 84 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + F E ++ KA Sbjct: 85 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENSNLQRKAEI 144 Query: 162 ALQYTQ 167 ++Y + Sbjct: 145 VMEYYR 150 >gi|294338336|emb|CBJ94375.1| Probable ribonucleotide reductase (small subunit) [Campylobacter phage CPt10] Length = 369 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 6/141 (4%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 S + +KY + W EV D A + N L + + R Sbjct: 21 TGKNSQRYDV--IKYPIFETLFKKMAGFDWQEDEVQCTKDQADF---NVLNEAMKHSYTR 75 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLL-RQAFEEAVHSHTFQYIITSLGLDEG 143 L +S+ ++ I ++NPE + Q FE + HS ++ +I+ S+ + Sbjct: 76 VLNKLIFLDSIQGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYTHILRSVYANPS 135 Query: 144 ELFNMYREVPSITAKANWALQ 164 ++F+ E+P + A+ + Sbjct: 136 KIFDESFEIPVLLELADSISK 156 >gi|269794349|ref|YP_003313804.1| ribonucleoside-diphosphate reductase class Ib subunit beta [Sanguibacter keddieii DSM 10542] gi|269096534|gb|ACZ20970.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Sanguibacter keddieii DSM 10542] Length = 325 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + LT E+ + R +++ ++ Sbjct: 27 EVWDRLTGNFWLPEKVPVSNDIQSWAT---LTPVEKELTTRVFTGLTLLDTIQGTVGAVS 83 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + + F E ++ KA Sbjct: 84 LIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLISTQEIDDAFRWSEENANLQRKAEI 143 Query: 162 ALQYTQ 167 L+Y Sbjct: 144 VLEYYH 149 >gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] Length = 319 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 5/146 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M + ++ E + N W+P +VP+ +DL W++ L DE+ M Sbjct: 1 MTGPVFEAINWNRIQDDKDLEVWDRLTGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTN 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE- 142 R ++L +++ P AF E+VH+ ++ I ++L E Sbjct: 58 RVFTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEE 117 Query: 143 -GELFNMYREVPSITAKANWALQYTQ 167 E F E ++ KA Y Sbjct: 118 INESFRWSNENEALQRKAQIIKSYYD 143 >gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 319 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA + Sbjct: 127 ENPQLQRKAQIMM 139 >gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 324 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W LT E+ M R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDLPSW---GTLTAHEKQMTMRVFTGLTLLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 83 LIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 141 Query: 161 WALQYTQ 167 +QY + Sbjct: 142 IVMQYYK 148 >gi|322831489|ref|YP_004211516.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] gi|321166690|gb|ADW72389.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] Length = 327 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L+ E+ + R Sbjct: 18 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LSAKEKQLTIRVFTGLTLL 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + + P F EAVH+ ++ I ++L +D E + Sbjct: 75 DTVQNVVGAPTLMKDAVTPHEEAVYSNICFMEAVHARSYSSIFSTLCATVDVDEAYRWSE 134 Query: 151 EVPSITAKANWALQYTQ 167 E ++ KA L Y Sbjct: 135 ENVALQNKAAIILSYYD 151 >gi|300776394|ref|ZP_07086252.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] gi|300501904|gb|EFK33044.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] Length = 371 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +EV D+ + S L E+ +K L A Sbjct: 54 RVSYKPFEYPEVLQFVEAINKSFWVHSEVDFTADVQDFHS--QLEPHEKHAVKNALLAIA 111 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y HL PE A E HS + ++ LG + E N+ Sbjct: 112 QIEVSVKTFWG-NLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYN-DEFLNVIE 169 Query: 151 EVPSITAKANW---ALQYTQTLS 170 +P++ + + AL++ + + Sbjct: 170 -IPAVKGRIEFLGNALKHANSAT 191 >gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus nasoniae] Length = 321 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 + N+ ++ E + N W+P ++P+ +D+ W N LT +E+ + Sbjct: 3 ITNSIVRAINWNRIEDDKDLEVWNKLTTNFWLPEKIPLSNDIPTW---NTLTKEEKKLTI 59 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--D 141 R +++ N A+ P + +F EAVH+ ++ I ++L L D Sbjct: 60 RVFTGLTLLDTIQNNVGAPALMTDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTD 119 Query: 142 EGELFNMYREVPSITAKANWALQ 164 + + E ++ KA+ L+ Sbjct: 120 VDDAYQWSEENSALQKKAHLILE 142 >gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 320 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT +E+ + R +++ ++ Sbjct: 22 EVWDRLTGNFWLPEKVPVSNDIPSW---GTLTANEKQLTMRVFTGLTMLDTIQGTVGAVS 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P L AF E+VH+ ++ I ++L E+ + + E P++ KA Sbjct: 79 LIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCS-TAEIDDAFRWSEENPNLQRKAE 137 Query: 161 WALQYTQ 167 LQY + Sbjct: 138 IVLQYYR 144 >gi|299537049|ref|ZP_07050352.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus fusiformis ZC1] gi|298727290|gb|EFI67862.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus fusiformis ZC1] Length = 322 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 7/154 (4%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + W P E+ + D+ WKS + K+ +++ N + Sbjct: 19 AQIFWDQQWKQIWFPEEIAVSKDIKQWKSFEH-----QDTYKKVFAGLTLLDTVQTNIGM 73 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + + + + + L EA+H+ ++ YI T+L +E ELF ++ + KA Sbjct: 74 NRVAAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEFLQYKA 133 Query: 160 NWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 N ++ + K S ++ S F Sbjct: 134 NKIADIYNSIEEGNPESLWKAMFSSVMLESFLFY 167 >gi|295134784|ref|YP_003585460.1| ribonucleotide reductase [Zunongwangia profunda SM-A87] gi|294982799|gb|ADF53264.1| ribonucleotide reductase [Zunongwangia profunda SM-A87] Length = 324 Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 13/162 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +EV D+ + S LT E+ ++K++L A Sbjct: 7 RLNYKPFEYPGVLDFTDAINQSFWVHSEVDFTADVQDFHS--HLTTGEKDVVKKSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + +Y+HL PE A E HS + ++ LG + F Sbjct: 65 QIEVAVKSFWGD-LYKHLPKPEFNGLGSTFAECEFRHSQAYSRLLEVLGYNNE--FAKVV 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 EVP+I + + + + + ++ + F Sbjct: 122 EVPAIKKRIAYLTE--------ALEHTKAEDPKDYVSSLILF 155 >gi|126650012|ref|ZP_01722245.1| ribonucleotide-diphosphate [Bacillus sp. B14905] gi|126593184|gb|EAZ87146.1| ribonucleotide-diphosphate [Bacillus sp. B14905] Length = 322 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + W P E+ + D+ WKS + K+ +++ N + Sbjct: 19 AQIFWDQQWKQIWFPEEIAVSKDIKQWKSFEH-----QDTYKKVFAGLTLLDTVQTNIGM 73 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + + + + + L EA+H+ ++ YI T+L +E ELF ++ + KA Sbjct: 74 NRVAAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKA 133 Query: 160 NWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 N ++ K S ++ S F Sbjct: 134 NKIADIYNSIEEGDSESLWKAMFSSVMLESFLFY 167 >gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] Length = 338 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 5/117 (4%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W++ LT+ E+ M R +++ +++ S P Sbjct: 48 NFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGLTLLDTIQGTVGAVSMIPDASTP 104 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYT 166 L AF E+VH+ ++ I ++L E F E P + KA L Y Sbjct: 105 HEEAVLTNIAFMESVHAKSYSTIFSTLCSTPQIDEAFRWAEENPYLQRKAKIILGYY 161 >gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 329 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL WK+ LT+ E+ R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGLTLLDTIQGTVGAVS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I +L + F E ++ KA Sbjct: 88 LLPDAKTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQRKAKI 147 Query: 162 ALQYTQ 167 + Y + Sbjct: 148 VMSYYK 153 >gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] Length = 382 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 1/147 (0%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N+D + V + +K+ E + W P EV + D A + Sbjct: 7 QNEFNIDQPMFFGDDTGVARYEIVKHEKFEELTTKQLSFFWRPEEVNLTTDKAQFDKLWE 66 Query: 74 LTDDE-RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 + + NLG+ +S+ + + S+ +++ F E +HS ++ Sbjct: 67 TNRGHLQTIFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETIHSRSYT 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKA 159 +II +L D ++F+ I A+A Sbjct: 127 HIIRNLYSDPSKIFDGVLANKEIMARA 153 >gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36] gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36] Length = 352 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 7/154 (4%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 ++ + N W P E+ M++D +W + LT E+ R A +SL I+ Sbjct: 48 YDISQTLEANFWRPVEIKMKEDEKMW---DSLTPIEQDTFLRVGTALACLDSLQVKAILE 104 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I R +N A +EA H+ ++ YI +SL + FN + P + + Sbjct: 105 VI-RFTTNSALANISAFIAQQEATHTTSYSYITSSLVRLPVQNQYFNETMKHPVLAKRNK 163 Query: 161 WALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L Y +PS + I + F Sbjct: 164 LVLDVYEDFAENPSLQNLFRMLVQSINLEGIYFY 197 >gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] Length = 323 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P ++P+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYHN 148 >gi|325103985|ref|YP_004273639.1| ribonucleotide reductase [Pedobacter saltans DSM 12145] gi|324972833|gb|ADY51817.1| ribonucleotide reductase [Pedobacter saltans DSM 12145] Length = 324 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 5/149 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +E+ D + S L+ +E+ IKR+L A Sbjct: 7 RINYKPFEYPEVLDFTNAINKSFWVHSEIDFTADTQDFHS--HLSTNEKESIKRSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + +Y HL PE A E HS + ++ LG + F Sbjct: 65 QIEVNV-KSFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNNE--FEKVI 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNK 179 E+P I + + + S + K Sbjct: 122 EIPVIKKRIAYLSNALKDTKSDDKKAYIK 150 >gi|309800432|ref|ZP_07694593.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus infantis SK1302] gi|308115948|gb|EFO53463.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus infantis SK1302] Length = 319 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVYNIQ-FMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPYLQKKAE 134 >gi|321309596|ref|YP_004191925.1| ribonucleotide reductase subunit beta [Mycoplasma haemofelis str. Langford 1] gi|319801440|emb|CBY92086.1| ribonucleotide reductase of class Ib (aerobic), beta subunit [Mycoplasma haemofelis str. Langford 1] Length = 327 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 4/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ D +W LT++E+ + K+ L ++ + + I Sbjct: 25 FWNQNVRQFWIDEEIPLSGDKLIWA--AELTENEKDVYKKVLVGLTLLDTHQGSLGMTNI 82 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + NP L E +H+ ++ I ++L + ELF + P + K Sbjct: 83 AMSIDNPHATAVLQFMGMMEQMHAKSYSTIFSTLATSQEIEELFKWSEQNPELQKKMEII 142 Query: 163 LQYTQTLSSP 172 + + + Sbjct: 143 SHHYENIQDD 152 >gi|224283650|ref|ZP_03646972.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|310288088|ref|YP_003939347.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum S17] gi|313140805|ref|ZP_07802998.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|309252025|gb|ADO53773.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum S17] gi|313133315|gb|EFR50932.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] Length = 330 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ ++DDE + +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MSDDEHTLTMHVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDAAFDWSERNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] Length = 323 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P ++P+ +D W N L DE+ + R Sbjct: 14 NWNRIQDDKDLEVWNRLTSNFWLPEKIPLSNDTVSW---NTLKTDEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L +D E + Sbjct: 71 DTIQNTVGAPCLMEDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYT 166 E ++ KA L Y Sbjct: 131 ENTALQNKAKIILSYY 146 >gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia farcinica IFM 10152] gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit [Nocardia farcinica IFM 10152] Length = 320 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W N LT E+ + R +++ ++ Sbjct: 22 EVWARLTGNFWLPEKVPVSNDIPSW---NTLTPHEQQLTMRVFTGLTLLDTIQGTVGAVS 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + E F E ++ KA Sbjct: 79 LIPDALTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENRNLQRKAEI 138 Query: 162 ALQYTQ 167 L Y Q Sbjct: 139 VLDYYQ 144 >gi|257069608|ref|YP_003155863.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] gi|256560426|gb|ACU86273.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] Length = 322 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 6/156 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + N W+P ++P+ +D+ W + +++E+ M Sbjct: 13 NWNRIPDPKDQEVWDRLTGNFWLPEKIPLSNDIQSWSRR---SEEEQKMAMHVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P AF E+VH+ ++ I ++L + E F+ Sbjct: 70 DTVQGTVGAISLIPDAVTPHEEAVYTNIAFMESVHAKSYSQIFSTLANTKQIDEAFHWGA 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + KA + Y + P L Sbjct: 130 TNEQLQKKAQIIMSYYEG-DDPEKRKVASVLLESFL 164 >gi|52080345|ref|YP_079136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus licheniformis ATCC 14580] gi|52785724|ref|YP_091553.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus licheniformis ATCC 14580] gi|319645870|ref|ZP_08000100.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] gi|52003556|gb|AAU23498.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus licheniformis ATCC 14580] gi|52348226|gb|AAU40860.1| NrdF [Bacillus licheniformis ATCC 14580] gi|317391620|gb|EFV72417.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] Length = 325 Score = 73.3 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPLV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 138 IVGLYEKIRQGDKISLFKAMVASVYLESFLFY 169 >gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] Length = 241 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 16/70 (22%) Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSR 184 + + +I D E LF +P + KA+WAL++ + S Sbjct: 23 AEMYSLLIDQYVKDPAEKSHLFRAIETIPCVKKKADWALKWIDSSDS------------- 69 Query: 185 ILTRSLRFLC 194 R L F C Sbjct: 70 FAERLLAFAC 79 >gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum WCFS1] gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus plantarum WCFS1] gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] Length = 336 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 10/136 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +D+A W+ L DD R ++ G ++L + + + Sbjct: 34 WEKLTEQ---FWLDTRIPVSNDMADWRE---LDDDHRWVVGHVFGGLTLLDTLQSQDGLQ 87 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ R++ ++ E Q F E+VH+ ++ I +L + E+F+ + AKA Sbjct: 88 ALRRNVLTSHETAVLNNIQ-FMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKA 146 Query: 160 NWALQYTQTLSSPSFH 175 W + + Sbjct: 147 QWIYKLYDNIDEDPLK 162 >gi|256422447|ref|YP_003123100.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588] gi|256037355|gb|ACU60899.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588] Length = 324 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 5/148 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 Q P +Y + + + W+ EV D + S L ER ++ +L A Sbjct: 7 RLQYKPFEYPEVLQFTEAINKSFWVHAEVDFTADTQDFHS--HLNPAERTAVRNSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + +Y HL PE A E HS + ++ LG + F Sbjct: 65 QIEVAV-KSFWGNLYNHLPKPEMNGLGSTFAECEFRHSEAYSRLVEVLGYNSQ--FEKLV 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWN 178 EVP I + + S + Sbjct: 122 EVPVIRQRIEYLSDALSNAKSTDTREYT 149 >gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 338 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 5/151 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + N L E+ R +++ ++ Sbjct: 40 EVWDRLTGNFWLPEKVPLSNDIKSWNTLNAL---EQRTTMRVFTGLTMLDTIQGTVGAVS 96 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I +L + F E + KA Sbjct: 97 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFQTLASTPEIQDAFRWGEENEYLQKKAKI 156 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 L Y + + + S + Sbjct: 157 ILDYYEGDNPQKKKVASTLLESFLFYSGFYL 187 >gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Chromohalobacter salexigens DSM 3043] Length = 326 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 R D L+ E + N W+P +VP+ +D++ W N LT+ E+ + R Sbjct: 12 RVDAINWNRLQDEKDLEVWNRLTANFWLPEKVPLSNDVSAW---NTLTEQEQTLTIRVFT 68 Query: 88 FFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ I ++ E + +F E+VH+ ++ I ++L D + Sbjct: 69 GLTLLDTIQGTIGAPTLIEDAVTPHEEAVFTNI-SFMESVHARSYSSIFSTLCATRDVDD 127 Query: 145 LFNMYREVPSITAKANWAL 163 + E P + KA L Sbjct: 128 AYRWSEENPHLQNKAELIL 146 >gi|238790129|ref|ZP_04633906.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia frederiksenii ATCC 33641] gi|238721798|gb|EEQ13461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia frederiksenii ATCC 33641] Length = 323 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + L +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LAPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 E + KA+ LQ+ Sbjct: 131 ENGPLQKKADIILQHYHN 148 >gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 319 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P++ KA L Sbjct: 127 ENPTLQRKAQIIL 139 >gi|311064961|ref|YP_003971687.1| ribonucleoside-diphosphate reductase subunit beta NrdF [Bifidobacterium bifidum PRL2010] gi|310867281|gb|ADP36650.1| NrdF Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum PRL2010] Length = 330 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+ ++DDE + +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDIPSWQK---MSDDEHTLTMHVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I ++L + F+ + KA Sbjct: 89 LIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEI 148 Query: 162 ALQYTQ 167 L Y + Sbjct: 149 VLDYYE 154 >gi|169827410|ref|YP_001697568.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus sphaericus C3-41] gi|168991898|gb|ACA39438.1| Ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus sphaericus C3-41] Length = 318 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + W P E+ + D+ WKS + K+ +++ N + Sbjct: 15 AQIFWDQQWKQIWFPEEIAVSKDIQQWKSFEH-----QDTYKKVFAGLTLLDTVQTNIGM 69 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + + + + + L EA+H+ ++ YI T+L +E ELF ++ + KA Sbjct: 70 NRVAAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKA 129 Query: 160 NWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 N ++ K S ++ S F Sbjct: 130 NKIADIYNSIEEGDAESLWKAMFSSVMLESFLFY 163 >gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 305 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|146312797|ref|YP_001177871.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp. 638] gi|145319673|gb|ABP61820.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterobacter sp. 638] Length = 319 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + A+ P + +F EAVH+ ++ I ++L D ++ Sbjct: 67 DTIQNSVGAPALMGDSLTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126 Query: 151 EVPSITAKANWALQYTQT 168 S+ KA L+Y Sbjct: 127 ASTSLQRKAQLVLEYYHA 144 >gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] Length = 325 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 5/145 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W S LT +E+ + R +++ A Sbjct: 26 EIWNRLTSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGLTLLDTIQNTVGAPA 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161 + P L AF EAVH+ ++ + ++L + + F E + AK+ Sbjct: 83 LMADAVTPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFRWSEENEFLQAKSRL 142 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRIL 186 L+ SSP L Sbjct: 143 ILEEYNATSSPLKKKIASVFLESFL 167 >gi|13095637|ref|NP_076552.1| ribonucleotide reductase small subunit [Bovine herpesvirus 4] gi|12802587|gb|AAK07979.1|AF318573_59 ribonucleotide reductase small subunit [Bovine herpesvirus 4] Length = 305 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 13/147 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W P++V + D+ KS L +R K F +ESLV NI I + + Sbjct: 25 QNRWFPSQVSLHGDVNHLKS---LNVQDREFYKFLFTFLGMAESLVNFNI-EDIIKQFES 80 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLG-LDEGELFN---MYREVPSITAKANWALQYT 166 + Y Q E +H+ ++ I+ D E++ M ++ K +W Sbjct: 81 HDMLHYYTEQMAMENIHARMYENILNMFFNNDPAEMYRYTQMIINDRALIRKLDWLHSRI 140 Query: 167 QTLSSPSFHYWNKRRRSRILTRSLRFL 193 +++S+ ++ +L + F+ Sbjct: 141 KSVSN-----KAEKVLLFLLVEGIFFV 162 >gi|260599071|ref|YP_003211642.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter turicensis z3032] gi|260218248|emb|CBA33173.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Cronobacter turicensis z3032] Length = 320 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L+ E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 11 NWNKLQDEKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P L +F EAVH+ ++ I ++L D + Sbjct: 68 DTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYAWSE 127 Query: 151 EVPSITAKANWALQYTQT 168 E + KA L + + Sbjct: 128 ENAPLQRKAQIILAHYRD 145 >gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 329 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ WK+ LT+ E+ R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGLTLLDTIQGTVGAVS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I +L + F E ++ KA Sbjct: 88 LLPDAVTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQRKAKI 147 Query: 162 ALQYTQ 167 + Y Q Sbjct: 148 VMSYYQ 153 >gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 328 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 5/169 (2%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D + + + +N W+P +VP+ +D+ WK + + E+ + Sbjct: 16 DPINWNEITDQVDKDVWDRLTSNFWLPEKVPVSNDIPTWK---IMDEAEQWATMQVFTGL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ L+I + P AF E+VH+ ++ I +L FN Sbjct: 73 TMLDTMQGTVGALSILPDAATPHEEAVYTNIAFMESVHAKSYSNIFMTLADTPTINHAFN 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLCRV 196 R+ + KA+ L + + +SP + S + R+ Sbjct: 133 WGRQSERLQYKAHRVLDFYKRGNSPMRKAASTLLESFLFYSGFYLPLRM 181 >gi|68068657|ref|XP_676239.1| ribonucleotide reductase small subunit [Plasmodium berghei strain ANKA] gi|56495842|emb|CAH97095.1| ribonucleotide reductase small subunit, putative [Plasmodium berghei] Length = 299 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 12/147 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + P+KY W Y + W + D K L +++ + + L Sbjct: 1 VMFPIKYKTFWNYYKE-ESLFWTAEDHNFDKD------KPFLNSMDKITLSKLLELLYLH 53 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMY 149 I + + PE R + Q E +H+ + I S D + E+ + Sbjct: 54 LCDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACIFESYSSDSKQKKEIIDKV 113 Query: 150 REVPSITAKANWALQYTQTLSSPSFHY 176 + S+ K NW Y++ ++ F+ Sbjct: 114 LKYESVFKKQNWL--YSEFEANIPFYN 138 >gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895] Length = 319 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 5/134 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ + P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNIAGAPALMQDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQ 164 E + KA LQ Sbjct: 127 ENAPLQRKAQIILQ 140 >gi|156932794|ref|YP_001436710.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156531048|gb|ABU75874.1| hypothetical protein ESA_00590 [Cronobacter sakazakii ATCC BAA-894] Length = 320 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L+ E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 11 NWNKLQDEKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P L +F EAVH+ ++ I ++L D + Sbjct: 68 DTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYAWSE 127 Query: 151 EVPSITAKANWALQYTQT 168 E + KA L + + Sbjct: 128 ENAPLQRKAQIILAHYRD 145 >gi|296316020|ref|YP_003662484.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 5] gi|40456143|gb|AAR86121.1| UL40 ribonucleotide reductase small subunit [Bovine herpesvirus 5] Length = 315 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 8/136 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE P+ DD L+ E + F ++++ LV N Sbjct: 23 PDIDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFLSAADDLVNVN 79 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSI 155 + + + + Y + Q E VHS + I L ++ Y E P++ Sbjct: 80 LG-NLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFKNDAVARAGYVEDALSDPAV 138 Query: 156 TAKANWALQYTQTLSS 171 K +W + S Sbjct: 139 RRKVDWLERRVAAAES 154 >gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 319 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNEFLQKKAQ 135 >gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 319 Score = 72.6 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNEFLQKKAQ 135 >gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 319 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|227112968|ref|ZP_03826624.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 320 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---STLNARERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149 +++ + P L +F EAVH+ ++ I ++L L E+ + Y Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWS 126 Query: 150 REVPSITAKANWALQYTQT 168 E ++ K++ L + ++ Sbjct: 127 EENTALQKKSDIILSHYRS 145 >gi|227329868|ref|ZP_03833892.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 320 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 7/139 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---GTLNARERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149 +++ + P L +F EAVH+ ++ I ++L L E+ + Y Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWS 126 Query: 150 REVPSITAKANWALQYTQT 168 E ++ K++ L + ++ Sbjct: 127 EENTALQKKSDIILSHYRS 145 >gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 319 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 319 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|308173699|ref|YP_003920404.1| ribonucleoside-diphosphate reductase minor subunit [Bacillus amyloliquefaciens DSM 7] gi|307606563|emb|CBI42934.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553367|gb|AEB23859.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens TA208] gi|328911843|gb|AEB63439.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens LL3] Length = 329 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA+ Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAHT 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 138 VVGLYRAIKKDDEISLFKAMVASVYLESFLFY 169 >gi|213864815|ref|ZP_03386934.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 170 Score = 72.2 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 319 Score = 72.2 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|319441868|ref|ZP_07991024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 332 Score = 72.2 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W L++ E+ R +++ + Sbjct: 34 EVWDRLTGNFWLPEKVPLSNDIKSW---GTLSEAEQTATMRVFTGLTMLDTIQGTVGATS 90 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I +L + F E ++ KA+ Sbjct: 91 LIDDAVTPHEEAVFTNIAFMESVHAKSYSSIFMTLASTPQINDAFRWSEENENLQTKADI 150 Query: 162 ALQYTQ 167 L + Q Sbjct: 151 VLNFYQ 156 >gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2] gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2] gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid herpesvirus 2] gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2] gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2] gi|194346388|gb|ACF49570.1| UL40 [synthetic construct] gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2] gi|237626230|gb|ACR02753.1| UL40 [synthetic construct] gi|237626404|gb|ACR02926.1| UL40 [synthetic construct] Length = 343 Score = 72.2 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL + LT++ER + F ++++ LV N Sbjct: 51 PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155 I + S + Y Q EAVHS + + + L E P+I Sbjct: 108 I-DNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166 Query: 156 TAKANWALQ 164 +K +W + Sbjct: 167 QSKLDWLNK 175 >gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2] Length = 343 Score = 72.2 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL + LT++ER + F ++++ LV N Sbjct: 51 PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155 I + S + Y Q EAVHS + + + L E P+I Sbjct: 108 I-DNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166 Query: 156 TAKANWALQ 164 +K +W + Sbjct: 167 QSKLDWLNK 175 >gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2 gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 319 Score = 72.2 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 319 Score = 72.2 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|116253995|ref|YP_769833.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|115258643|emb|CAK09747.1| putative ribonucleoside-diphosphate reductase beta subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 324 Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 9 SRVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVF 65 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ + + + P L +F EAVH+ ++ I ++L D + Sbjct: 66 TGLTLLDTIQNGVGSIRLMEDAATPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDD 125 Query: 145 LFNMYREVPSITAKANWALQYTQT 168 + E + K+ ++ ++ Sbjct: 126 AYRWSEENEFLQRKSALIMEQYRS 149 >gi|153949141|ref|YP_001400043.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|152960636|gb|ABS48097.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pseudotuberculosis IP 31758] Length = 323 Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L L D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 + + KA+ LQ+ Sbjct: 131 DNGPLQKKADIILQHYHN 148 >gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 319 Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|311113720|ref|YP_003984942.1| ribonucleotide-diphosphate reductase subunit beta [Rothia dentocariosa ATCC 17931] gi|310945214|gb|ADP41508.1| ribonucleotide-diphosphate reductase subunit beta [Rothia dentocariosa ATCC 17931] Length = 325 Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ WK+ LT +E+ + R +++ ++ Sbjct: 27 EVWDRLTGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGLTLLDTIQGTVGAVS 83 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKAN 160 + AF E+VH+ ++ I ++L E+ + +R E + KA Sbjct: 84 LLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLSS-TKEIDDAFRWASENEHLQKKAK 142 Query: 161 WALQYT 166 L Y Sbjct: 143 IILAYY 148 >gi|3068719|gb|AAC14561.1| ribonucleoside diphosphate reductase small subunit [Corynebacterium ammoniagenes] Length = 329 Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ W N +T E+L R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAIS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + AF E+VH+ ++ I +L E F E ++ KA Sbjct: 88 LLPDVETMHEEGVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKI 147 Query: 162 ALQYTQ 167 + Y Sbjct: 148 IMSYYN 153 >gi|17989274|ref|NP_541907.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. 16M] gi|17985137|gb|AAL54171.1| ribonucleoside-diphosphate reductase beta chain [Brucella melitensis bv. 1 str. 16M] Length = 335 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 8/152 (5%) Query: 12 AGEKRVNVDDKRMLNARS---DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 E +N+ K R ++ E + N W+P +VP+ +D+ W Sbjct: 2 TEESFMNMQHKTATKGRPASVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSW 61 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L E+ + R +++ + + P L +F EAVH+ Sbjct: 62 ET---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHA 118 Query: 129 HTFQYIITS--LGLDEGELFNMYREVPSITAK 158 ++ I ++ L D + + E + K Sbjct: 119 RSYSSIFSTLCLTPDVDDAYRWSEENEFLQRK 150 >gi|300741626|ref|ZP_07071647.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia dentocariosa M567] gi|300380811|gb|EFJ77373.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia dentocariosa M567] Length = 325 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ WK+ LT +E+ + R +++ ++ Sbjct: 27 EVWDRLTGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGLTLLDTIQGTVGAVS 83 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKAN 160 + AF E+VH+ ++ I ++L E+ + +R E + KA Sbjct: 84 LLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLSS-TKEIDDAFRWASENEHLQKKAK 142 Query: 161 WALQYT 166 L Y Sbjct: 143 IILAYY 148 >gi|146329200|ref|YP_001209518.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus VCS1703A] gi|146232670|gb|ABQ13648.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus VCS1703A] Length = 325 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 5/145 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 Q+ P +Y E + +++W+ TE D+ +K+ ++D ER + R++ + Sbjct: 9 RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--AISDAERTALTRSMLAIS 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y + E A E H + +++ LG+ ELF Sbjct: 67 QIEVSVKRFWGD-LYHYFPKAEIDDVGGTFAESEVRHKDAYSFLLEQLGM--NELFTQIT 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFH 175 +P++ A+ + + + + Sbjct: 124 HIPALMARIEYMEAFMRNKDKNNQE 148 >gi|227548647|ref|ZP_03978696.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] gi|227079261|gb|EEI17224.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] Length = 332 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W++ L D E+ R +++ ++ Sbjct: 34 EVWDRLTGNFWLPEKVPVSNDIPSWRT---LNDYEKTATMRVFTGLTLLDTIQGTVGAVS 90 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + AF E+VH+ ++ I +L + F E S+ KA Sbjct: 91 LLPDAKTMHEEAVYTNIAFMESVHAKSYSNIFMTLADTPAINDAFRWSEENESLQRKAKI 150 Query: 162 ALQYTQ 167 L Y + Sbjct: 151 ILSYYE 156 >gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 319 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSDLEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNKFLQKKAQ 135 >gi|328945482|gb|EGG39633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1087] Length = 319 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F+ P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|320539491|ref|ZP_08039160.1| putative truncated ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] gi|320030616|gb|EFW12626.1| putative truncated ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] Length = 309 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + LT E+ + R +++ A Sbjct: 25 EVWNRLTANFWLPEKVPLSNDIPSWAT---LTAKEQQLTLRVFTGLTLLDTIQNTVGAPA 81 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P +F EAVH+ ++ I ++L D + + +E ++ KAN Sbjct: 82 LMADALTPHEEAVYSNISFMEAVHARSYSSIFSTLCQTSDVDDAYRWSQENHALQKKANL 141 Query: 162 ALQYTQT 168 L + Sbjct: 142 ILTHYHA 148 >gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 320 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W++ L+ E+ + R +++ A Sbjct: 22 EVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNTVGAPA 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L +F EAVH+ ++ I ++L + F + KA Sbjct: 79 LMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQL 138 Query: 162 ALQYTQTLS 170 L Y Q Sbjct: 139 MLDYYQADE 147 >gi|329738368|gb|AEB97332.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1] Length = 310 Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 8/129 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + N+W E+ D + LT +E K F A+++ L+ + Sbjct: 16 DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKFVFAFLAAADDLINLD 72 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSI 155 I + + + + Y Q E VHS T+ + L + + Y P+I Sbjct: 73 IG-NLMTLFPHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARDRYVTEAIKDPAI 131 Query: 156 TAKANWALQ 164 K +W + Sbjct: 132 KKKIDWLNR 140 >gi|69245952|ref|ZP_00603724.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|227552561|ref|ZP_03982610.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257880353|ref|ZP_05660006.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257882206|ref|ZP_05661859.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257885400|ref|ZP_05665053.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257888211|ref|ZP_05667864.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257891012|ref|ZP_05670665.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257894265|ref|ZP_05673918.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|257896901|ref|ZP_05676554.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|257899642|ref|ZP_05679295.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|258614695|ref|ZP_05712465.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecium DO] gi|260562343|ref|ZP_05832857.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|261209282|ref|ZP_05923674.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289567001|ref|ZP_06447402.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium D344SRF] gi|293378468|ref|ZP_06624631.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium PC4.1] gi|293553988|ref|ZP_06674590.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|293563177|ref|ZP_06677635.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1162] gi|293568383|ref|ZP_06679704.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1071] gi|293570828|ref|ZP_06681875.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|294615274|ref|ZP_06695151.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1636] gi|294617336|ref|ZP_06696975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1679] gi|294623134|ref|ZP_06702020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium U0317] gi|314939361|ref|ZP_07846602.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a04] gi|314941564|ref|ZP_07848449.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133C] gi|314949609|ref|ZP_07852933.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0082] gi|314953716|ref|ZP_07856591.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133A] gi|314992172|ref|ZP_07857616.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133B] gi|314997663|ref|ZP_07862593.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a01] gi|68195482|gb|EAN09926.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|227178310|gb|EEI59282.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257814581|gb|EEV43339.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257817864|gb|EEV45192.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257821256|gb|EEV48386.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257824265|gb|EEV51197.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257827372|gb|EEV53998.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257830644|gb|EEV57251.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|257833466|gb|EEV59887.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|257837554|gb|EEV62628.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|260073267|gb|EEW61608.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|260076828|gb|EEW64563.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289161202|gb|EFD09101.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium D344SRF] gi|291588904|gb|EFF20731.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1071] gi|291591871|gb|EFF23503.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1636] gi|291596409|gb|EFF27663.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1679] gi|291597503|gb|EFF28668.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium U0317] gi|291601845|gb|EFF32095.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291604868|gb|EFF34344.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1162] gi|291609096|gb|EFF38371.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|292642797|gb|EFF60944.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium PC4.1] gi|313588298|gb|EFR67143.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a01] gi|313593275|gb|EFR72120.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133B] gi|313594300|gb|EFR73145.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133A] gi|313599623|gb|EFR78466.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133C] gi|313641346|gb|EFS05926.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a04] gi|313644033|gb|EFS08613.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0082] Length = 321 Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W++ L+ E+ + G Sbjct: 10 NWNEIEDIIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRT---LSQLEKDTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + + + + + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 64 TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFD 123 Query: 148 MYREVPSITAKAN 160 P + KA Sbjct: 124 WTNTNPYLQKKAE 136 >gi|293394770|ref|ZP_06639061.1| ribonucleotide-diphosphate reductase subunit beta [Serratia odorifera DSM 4582] gi|291422721|gb|EFE95959.1| ribonucleotide-diphosphate reductase subunit beta [Serratia odorifera DSM 4582] Length = 319 Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 10 NWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTAKEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P +F EAVH+ ++ I ++L D + + Sbjct: 67 DTIQNTVGAPTLIDDAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTRDVDDAYRWSE 126 Query: 151 EVPSITAKANWALQYTQT 168 E ++ KA+ L + ++ Sbjct: 127 ENRALQKKADIILAHYRS 144 >gi|159184148|ref|NP_353105.2| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium tumefaciens str. C58] gi|159139483|gb|AAK85890.2| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium tumefaciens str. C58] Length = 324 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W L +E+ + R Sbjct: 15 NWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---GTLKPEEQELTIRVFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + + + P L +F EAVH+ ++ I ++L D + + Sbjct: 72 DTIQNGVGAVRLMPDSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYRWSE 131 Query: 151 EVPSITAKANWALQYTQT 168 E + K+ ++ + Sbjct: 132 ENEFLQRKSAIIMREYDS 149 >gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae bacterium 198] Length = 325 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 5/131 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT DE+ + R +++ Sbjct: 26 EIWNRLTVNFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPT 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + + P L AF EAVH+ ++ + ++L + E F E + AK+ Sbjct: 83 LMQDAITPHEESVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRL 142 Query: 162 ALQYTQTLSSP 172 L + +SP Sbjct: 143 ILDEYNSTASP 153 >gi|225686158|ref|YP_002734130.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis ATCC 23457] gi|256043236|ref|ZP_05446173.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256262715|ref|ZP_05465247.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9] gi|260564448|ref|ZP_05834933.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M] gi|265989661|ref|ZP_06102218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|225642263|gb|ACO02176.1| Ribonucleoside-diphosphate reductase [Brucella melitensis ATCC 23457] gi|260152091|gb|EEW87184.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M] gi|263000330|gb|EEZ13020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|263092503|gb|EEZ16756.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9] gi|326410495|gb|ADZ67559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis M28] gi|326553787|gb|ADZ88426.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis M5-90] Length = 329 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 8/147 (5%) Query: 17 VNVDDKRMLNARS---DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +N+ K R ++ E + N W+P +VP+ +D+ W++ Sbjct: 1 MNMQHKTATKGRPASVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET--- 57 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L E+ + R +++ + + P L +F EAVH+ ++ Sbjct: 58 LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSS 117 Query: 134 IITS--LGLDEGELFNMYREVPSITAK 158 I ++ L D + + E + K Sbjct: 118 IFSTLCLTPDVDDAYRWSEENEFLQRK 144 >gi|327458665|gb|EGF05013.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1057] Length = 319 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F+ P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 333 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W++ L+ E+ + R +++ A Sbjct: 35 EVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNTVGAPA 91 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L +F EAVH+ ++ I ++L + F + KA Sbjct: 92 LMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQL 151 Query: 162 ALQYTQTLS 170 L Y Q Sbjct: 152 MLGYYQADE 160 >gi|222475861|ref|YP_002564382.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239] gi|222454232|gb|ACM58496.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239] Length = 336 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 5/133 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y + + N++W+ TE D+ +K T E+ +IKR + Sbjct: 17 SERTQLKPYEYNDFLDYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKTVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E V IY + E + A E H + +++ LG+ F Sbjct: 75 IAQIEVQVKTFWSD-IYEEMPKAEIGSVGMTFAESEVRHMDAYSHLLDVLGITGD--FEE 131 Query: 149 YREVPSITAKANW 161 EVP++ + + Sbjct: 132 VTEVPAVKDRIEY 144 >gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] Length = 320 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W++ L+ E+ + R +++ A Sbjct: 22 EVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNTVGAPA 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L +F EAVH+ ++ I ++L + F + KA Sbjct: 79 LMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCEPLQRKAQL 138 Query: 162 ALQYTQTLS 170 L Y Q Sbjct: 139 MLGYYQADE 147 >gi|327189837|gb|EGE56975.1| ribonucleoside-diphosphate reductase protein, beta subunit [Rhizobium etli CNPAF512] Length = 324 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 5/140 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 9 SRVRAINWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVF 65 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ + + P L +F EAVH+ ++ I ++L D + Sbjct: 66 TGLTLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDD 125 Query: 145 LFNMYREVPSITAKANWALQ 164 + E + K+ ++ Sbjct: 126 AYRWSEENEFLQRKSALIME 145 >gi|325694009|gb|EGD35927.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK150] Length = 319 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F+ P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium urealyticum DSM 7109] gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] Length = 334 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 16/122 (13%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E +L N W+P +VP+ +DL W N L+D ER + R +++ A + Sbjct: 37 EVWLRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGLTLLDTMQATVGEIS 93 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 I L+ E Y AF +AVH+ ++ +F+ P+I +WA Sbjct: 94 QIQDALTEHEEAVYTNI-AFMQAVHARSYS-----------SVFSTLSSTPAINDAYDWA 141 Query: 163 LQ 164 ++ Sbjct: 142 VK 143 >gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] Length = 320 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W++ L+ E+ + R +++ A Sbjct: 22 EVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNTVGAPA 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L +F EAVH+ ++ I ++L + F + KA Sbjct: 79 LMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCEPLQRKAQL 138 Query: 162 ALQYTQTLS 170 L Y Q Sbjct: 139 MLGYYQADE 147 >gi|9629622|ref|NP_044898.1| ribonucleotide reductase subunit 2 [Murid herpesvirus 4] gi|6625623|gb|AAF19324.1|AF105037_56 60 [murid herpesvirus 4] gi|1850859|emb|CAA70275.1| ribonucleotide reductase, small subunit [Murid herpesvirus 4] gi|2317992|gb|AAB66450.1| ribonucleotide reductase small [murid herpesvirus 4] Length = 305 Score = 71.4 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 13/147 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W P+++P+ D+A L + +R K F +E LV NI + + + Sbjct: 25 KNMWFPSQIPLSSDVA---GIAQLNETDREFYKFLFVFLGLAERLVNFNI-EDLVKEFNC 80 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYT 166 + Y Q E +H + I+ + E P++ AK +W Sbjct: 81 HDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPTLKAKLDWLHTRV 140 Query: 167 QTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + ++ +L + F+ Sbjct: 141 K-----NTKTRAEKVLIFLLIEGIFFI 162 >gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] Length = 323 Score = 71.4 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 7/146 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL+ W LT+ E+ + R +++ + A Sbjct: 24 EIWNRLTVNFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGLTLLDTIQNSVGAPA 80 Query: 104 IY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + ++ E AF EAVH+ ++ + ++L + E F E P + KA Sbjct: 81 LMVDAVTQHEEAVLTNI-AFMEAVHARSYSSVFSTLCTTKQIDEAFRWSEENPHLQRKAQ 139 Query: 161 WALQYTQTLSSPSFHYWNKRRRSRIL 186 L Q P L Sbjct: 140 LILHEYQAGECPLKKKIASVFLESFL 165 >gi|71034151|ref|XP_766717.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva strain Muguga] gi|68353674|gb|EAN34434.1| ribonucleotide-diphosphate reductase small subunit, putative [Theileria parva] Length = 326 Score = 71.4 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 15/151 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +D+ +L + + P+++ W Y NN W + DDL S L Sbjct: 20 NDEILLKENHNRWVMFPIEHDTFWIMYKEVENNFWAAEDFIFSDDLN---SLFKLPKPLF 76 Query: 80 LMIKRNLGFFASSES-LVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSH----TFQ 132 + L F + ++ V ++ L + + E R + Q +E +H+ FQ Sbjct: 77 NSLFHLLSFHINLDNKWVCRPVDMTLELLSEVQIAEARAFYGFQLTDENIHTETIGTMFQ 136 Query: 133 YII----TSLGLDEGE-LFNMYREVPSITAK 158 + ++G D+ L+N + + Sbjct: 137 LLNQPLDNTIGQDKITWLYNECEKNKCFFKR 167 >gi|262283137|ref|ZP_06060904.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. 2_1_36FAA] gi|262261389|gb|EEY80088.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. 2_1_36FAA] Length = 319 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] Length = 329 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L DE+ + R +++ Sbjct: 30 EIWNRLTVNFWLPEKVPLSNDIQSWAT---LHPDEQQLTIRVFTGLTLLDTIQNTVGAPT 86 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L AF EAVH+ ++ + ++L D E F E + AK+ Sbjct: 87 LMPDALTPHEEAVLTNIAFMEAVHARSYSSVFSTLCQTADVDEAFRWSEENEHLQAKSRL 146 Query: 162 ALQYTQTLSSP 172 L SP Sbjct: 147 ILDEYGAAGSP 157 >gi|324993305|gb|EGC25225.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK405] gi|324995391|gb|EGC27303.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK678] gi|325697177|gb|EGD39064.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK160] gi|327461576|gb|EGF07907.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1] gi|327473300|gb|EGF18720.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK408] Length = 319 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] Length = 325 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT DE+ + R +++ Sbjct: 26 EIWNRLTVNFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPT 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + + P L AF EAVH+ ++ + ++L + E F E + AK+ Sbjct: 83 LMQDAITPHEEAVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRL 142 Query: 162 ALQYTQTLSSP 172 L +SP Sbjct: 143 ILDEYDATASP 153 >gi|157149762|ref|YP_001450838.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gordonii str. Challis substr. CH1] gi|157074556|gb|ABV09239.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 319 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|323167150|gb|EFZ52868.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella sonnei 53G] Length = 177 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|327489434|gb|EGF21227.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1058] Length = 319 Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|82545243|ref|YP_409190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii Sb227] gi|81246654|gb|ABB67362.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella boydii Sb227] gi|320186462|gb|EFW61190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri CDC 796-83] gi|332091953|gb|EGI97031.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella boydii 3594-74] Length = 304 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ + P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|190893561|ref|YP_001980103.1| ribonucleoside-diphosphate reductase protein, beta subunit [Rhizobium etli CIAT 652] gi|190698840|gb|ACE92925.1| ribonucleoside-diphosphate reductase protein, beta subunit [Rhizobium etli CIAT 652] Length = 324 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 5/140 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 9 SRVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVF 65 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ + + P L +F EAVH+ ++ I ++L D + Sbjct: 66 TGLTLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDIDD 125 Query: 145 LFNMYREVPSITAKANWALQ 164 + E + K+ ++ Sbjct: 126 AYRWSEENEFLQRKSALIME 145 >gi|260579705|ref|ZP_05847564.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|258602135|gb|EEW15453.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 331 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 6/145 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L D E+ R +++ + Sbjct: 33 EVWDRLTANFWLPEKVPLSNDVPSW---STLNDMEKQATMRVFTGLTMLDTIQGTVGAVK 89 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + P +F E+VH+ ++ I +L + F E + KA Sbjct: 90 LIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFRWSEENEKLQNKAKI 149 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRIL 186 L + + P L Sbjct: 150 ILDFYEG-DDPMKKKIASVLLESFL 173 >gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 319 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDVAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|327468920|gb|EGF14392.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK330] Length = 319 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|324990559|gb|EGC22495.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK353] Length = 319 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|327440528|dbj|BAK16893.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris StLB046] Length = 320 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + W P E+ + D+ WK + K+ G +++ N + Sbjct: 19 ARIFWDQQWKQIWFPEEIAVSKDVKQWKEFEH-----QDTYKKVFGGLTLLDTVQTNIGM 73 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 I ++ + + + L EA+H+ ++ YI T+L + E+F ++ + KA Sbjct: 74 NEIAKYTPDFQEKAVLTVFGSFEAIHAKSYSYIFTTLCTNTEIDEVFEWVQKNEFLQYKA 133 Query: 160 NWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 N + + K + ++ S F Sbjct: 134 NRIGEVYTAIKEDDPESLWKAMFASVMLESFLFY 167 >gi|68535550|ref|YP_250255.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium jeikeium K411] gi|68263149|emb|CAI36637.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium jeikeium K411] Length = 331 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 6/145 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + L D E+ R +++ + Sbjct: 33 EVWDRLTANFWLPEKVPLSNDVPSW---STLNDMEKQATMRVFTGLTMLDTIQGTVGAVK 89 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + P +F E+VH+ ++ I +L + F E + KA Sbjct: 90 LIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFRWSEENEKLQNKAKI 149 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRIL 186 L + + P L Sbjct: 150 ILDFYEG-DDPMKKKIASVLLESFL 173 >gi|9630287|ref|NP_046714.1| hypothetical protein SPBc2p162 [Bacillus phage SPBc2] gi|50812253|ref|NP_389886.2| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|75090792|sp|O64174|BNRDF_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|81637506|sp|O30601|YOSP_BACSU RecName: Full=SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|2522310|gb|AAB92486.1| YojQ/S [Bacillus subtilis subsp. subtilis str. 168] gi|3025640|gb|AAC13135.1| unknown [Bacillus phage SPbeta] gi|32468776|emb|CAB13896.2| SPbeta phage ribonucleoside-diphosphate reductase, beta subunit [Bacillus subtilis subsp. subtilis str. 168] Length = 329 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F + + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + +T+ K + + S F Sbjct: 138 IVSVYKTIKKNDEISLFKGMVASVFLESFLFY 169 >gi|300718018|ref|YP_003742821.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] Length = 319 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W N L DE+ + R +++ A Sbjct: 21 EVWNRLTSNFWLPEKVPLSNDIPAW---NSLNADEQQLTIRVFTGLTLLDTIQNTVGAPA 77 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P + +F EAVH+ ++ I ++L D + + + KA Sbjct: 78 LMADAVTPHEEAVMSNVSFMEAVHARSYSSIFSTLCHTTDVDAAYAWSEDNQPLQRKAEI 137 Query: 162 ALQYTQ 167 L++ Sbjct: 138 ILEHYH 143 >gi|125717616|ref|YP_001034749.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK36] gi|323352633|ref|ZP_08087603.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis VMC66] gi|125497533|gb|ABN44199.1| Ribonucleoside-diphosphate reductase 2, beta subunit, putative [Streptococcus sanguinis SK36] gi|322121669|gb|EFX93415.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis VMC66] gi|325688330|gb|EGD30349.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK72] gi|325690076|gb|EGD32080.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK115] Length = 319 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|238755711|ref|ZP_04617045.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri ATCC 29473] gi|238706078|gb|EEP98461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri ATCC 29473] Length = 323 Score = 71.0 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W LT E+ + R +++ Sbjct: 25 EVWNRLTSNFWLPEKVPLSNDIPSWA---MLTAQEKQLTIRVFTGLTLLDTIQNTVGAPT 81 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161 + + P +F EAVH+ ++ I ++L + D + + E ++ KA Sbjct: 82 LLQDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENTTLQKKAQI 141 Query: 162 ALQYTQ 167 L + Sbjct: 142 ILNHYH 147 >gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus asymbiotica] Length = 319 Score = 71.0 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 LK E + N W+P +VP+ +D+ W N LT +E+ + R Sbjct: 10 NWNRLKDDKDLEVWNRLTTNFWLPEKVPLSNDIPSW---NTLTAEEKKLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L L D + + Sbjct: 67 DTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTADVDDAYYWSE 126 Query: 151 EVPSITAKANWALQYT 166 ++ KA L Y Sbjct: 127 NNLALQNKAKIILNYY 142 >gi|157371959|ref|YP_001479948.1| ribonucleotide-diphosphate reductase subunit beta [Serratia proteamaculans 568] gi|157323723|gb|ABV42820.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568] Length = 323 Score = 71.0 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + +N W+P +VP+ +D+ W + LT E+ + R +++ Sbjct: 25 EVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGLTLLDTIQNTVGAPA 81 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 I ++ P +F EAVH+ ++ I ++L D + + E ++ KA+ Sbjct: 82 LIADAIT-PHEEAVYSNISFMEAVHARSYSSIFSTLCQTPDVDDAYRWSEENRALQKKAS 140 Query: 161 WALQYTQT 168 L + ++ Sbjct: 141 IILAHYRS 148 >gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] Length = 321 Score = 71.0 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y + + YL W+P E+P+ +D ++W + L ++ +L +R LG ++ + Sbjct: 15 YQFYDDLYLKQTEQFWLPEEIPVSEDKSIW---DTLDENIKLTYERILGGLTLLDTEQST 71 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSIT 156 I I N + L A E++H+ ++ I +L E ELFN E + Sbjct: 72 GI-QKIAEKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQ 130 Query: 157 AKANWALQ 164 K + ++ Sbjct: 131 EKVDQIMR 138 >gi|324111310|gb|EGC05292.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 319 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYTWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E S+ KA Q+ + Sbjct: 127 ENASLQRKAQIIQQHYR 143 >gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] Length = 320 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNQEKDLVGKVFGGLTLLDTMQSETGVN 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTDTNPYLQKKAQ 135 >gi|86359305|ref|YP_471197.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli CFN 42] gi|86283407|gb|ABC92470.1| ribonucleoside-diphosphate reductase, beta subunit protein [Rhizobium etli CFN 42] Length = 324 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 5/144 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 9 SRVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVF 65 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ + + P L +F EAVH+ ++ I ++L D + Sbjct: 66 TGLTLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDD 125 Query: 145 LFNMYREVPSITAKANWALQYTQT 168 + E + K+ ++ + Sbjct: 126 AYRWSEENEFLQRKSALIMEQYAS 149 >gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis FRC41] gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis C231] gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis 1002] gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium pseudotuberculosis I19] Length = 328 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W L D E+ R +++ ++ Sbjct: 30 EVWDRLTGNFWLPEKVPVSNDLKSW---GTLNDLEKTTTMRVFTGLTMLDTIQGTVGAVS 86 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I +L + E F E ++ KA Sbjct: 87 MIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKI 146 Query: 162 ALQYTQ 167 L Y + Sbjct: 147 VLSYYE 152 >gi|328912184|gb|AEB63780.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens LL3] Length = 305 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L E+ + L ++ N + + Sbjct: 2 FYNQNVKQFWLPEEIALNGDLLTWK---YLGTKEQDTYMKVLAGLTLLDTEQGNTGMPIV 58 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA+ Sbjct: 59 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKQNKYLQKKAHT 118 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + + K + + S F Sbjct: 119 VVGLYRAIKKDDEISLFKAMVASVYLESFLFY 150 >gi|218547807|ref|YP_002381598.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ATCC 35469] gi|218355348|emb|CAQ87955.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia fergusonii ATCC 35469] Length = 319 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYTWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E S+ KA Q+ + Sbjct: 127 ENASLQRKAQIIQQHYR 143 >gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] Length = 322 Score = 70.6 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ W N L +E+ M + ++L ++ Sbjct: 24 EVWDRLTGNFWLPEKIPLSNDIPSW---NTLRPEEQDMTNKVFTNLTLLDTLQGTVGAIS 80 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + E+F E + KA Sbjct: 81 LISDARTPHEEAVLTNIAFMESVHARSYSSIFSTLLSTQEINEVFRWSEENEQVQRKAEI 140 Query: 162 ALQYT 166 Y Sbjct: 141 VNSYY 145 >gi|240950330|ref|ZP_04754600.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor NM305] gi|240295141|gb|EER45960.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor NM305] Length = 326 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 7/142 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ +TD ER ++ R + A Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TITDHERHVLTRAM--LA 65 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +YR+ PE A E H + +++ LGL E+F+ Sbjct: 66 ISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQI 123 Query: 150 REVPSITAKANWALQYTQTLSS 171 +++ + + + + + + Sbjct: 124 QDIEPLMNRIRYMESFMKDKDA 145 >gi|221309910|ref|ZP_03591757.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221314233|ref|ZP_03596038.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319156|ref|ZP_03600450.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221323429|ref|ZP_03604723.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. SMY] Length = 195 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F + + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + +T+ K + + S F Sbjct: 138 IVSVYKTIKKNDEISLFKGMVASVFLESFLFY 169 >gi|22125124|ref|NP_668547.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] gi|45442235|ref|NP_993774.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51597273|ref|YP_071464.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108808370|ref|YP_652286.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Antiqua] gi|108811297|ref|YP_647064.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Nepal516] gi|145598906|ref|YP_001162982.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|149365457|ref|ZP_01887492.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CA88-4125] gi|162420024|ref|YP_001607865.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|165925252|ref|ZP_02221084.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939901|ref|ZP_02228439.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008124|ref|ZP_02229022.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212554|ref|ZP_02238589.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167398943|ref|ZP_02304467.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421281|ref|ZP_02313034.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423716|ref|ZP_02315469.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468720|ref|ZP_02333424.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis FV-1] gi|170023362|ref|YP_001719867.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186896377|ref|YP_001873489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218929725|ref|YP_002347600.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis CO92] gi|229838202|ref|ZP_04458361.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895452|ref|ZP_04510624.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis Pestoides A] gi|229898686|ref|ZP_04513831.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901543|ref|ZP_04516665.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis Nepal516] gi|270489729|ref|ZP_06206803.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294504447|ref|YP_003568509.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|21957983|gb|AAM84798.1|AE013726_1 ribonucleoside-diphosphate reductase 2, beta chain, frag [Yersinia pestis KIM 10] gi|45437099|gb|AAS62651.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis biovar Microtus str. 91001] gi|51590555|emb|CAH22196.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pseudotuberculosis IP 32953] gi|108774945|gb|ABG17464.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Nepal516] gi|108780283|gb|ABG14341.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Antiqua] gi|115348336|emb|CAL21269.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CO92] gi|145210602|gb|ABP40009.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Pestoides F] gi|149291870|gb|EDM41944.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CA88-4125] gi|162352839|gb|ABX86787.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|165912120|gb|EDR30759.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922859|gb|EDR40010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992506|gb|EDR44807.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206485|gb|EDR50965.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166960770|gb|EDR56791.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051447|gb|EDR62855.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057886|gb|EDR67632.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749896|gb|ACA67414.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis YPIII] gi|186699403|gb|ACC90032.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+] gi|229681472|gb|EEO77566.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis Nepal516] gi|229688234|gb|EEO80305.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694568|gb|EEO84615.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701607|gb|EEO89634.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis Pestoides A] gi|262362562|gb|ACY59283.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D106004] gi|262366433|gb|ACY62990.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D182038] gi|270338233|gb|EFA49010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294354906|gb|ADE65247.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|320016142|gb|ADV99713.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 323 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L L D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQT 168 + + KA+ Q+ Sbjct: 131 DNGPLQKKADIISQHYHN 148 >gi|289606667|emb|CBI61081.1| unnamed protein product [Sordaria macrospora] Length = 59 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 Q P +Y WA++ + HWMP EVP+ +D W K LT ER ++ + Sbjct: 7 RKQYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQK--LTPHERNLLTQI 59 >gi|209551073|ref|YP_002282990.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536829|gb|ACI56764.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 324 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 9 SRVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVF 65 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ + + P L +F EAVH+ ++ I ++L D + Sbjct: 66 TGLTLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDD 125 Query: 145 LFNMYREVPSITAK 158 + E + K Sbjct: 126 AYRWSEENEFLQRK 139 >gi|218663032|ref|ZP_03518962.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli IE4771] Length = 324 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 9 SRVRAINWNRIEDDRDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVF 65 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ + + P L +F EAVH+ ++ I ++L D + Sbjct: 66 TGLTLLDTIQNGVGSIRLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDD 125 Query: 145 LFNMYREVPSITAK 158 + E + K Sbjct: 126 AYRWSEENEFLQRK 139 >gi|237785987|ref|YP_002906692.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237758899|gb|ACR18149.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium kroppenstedtii DSM 44385] Length = 336 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W + N L E+ R +++ ++ Sbjct: 38 EVWDRLTGNFWLPEKVPLSNDIKSWGTLNEL---EQRTTMRVFTGLTMLDTIQGTVGAVS 94 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P AF E+VH+ ++ I +L + F E ++ KA Sbjct: 95 LIPDALTPHEEAVYTNIAFMESVHARSYSSIFMTLSSTPEINDAFRWSEENENLQDKARI 154 Query: 162 ALQYTQ 167 L Y + Sbjct: 155 VLDYYE 160 >gi|257464834|ref|ZP_05629205.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor 202] gi|257450494|gb|EEV24537.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor 202] Length = 326 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 7/142 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ +TD ER ++ R + A Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TITDHERHVLTRAM--LA 65 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +YR+ PE A E H + +++ LGL E+F+ Sbjct: 66 ISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQI 123 Query: 150 REVPSITAKANWALQYTQTLSS 171 +++ + + + + + + Sbjct: 124 QDIEPLMNRIRYMESFMKDKDA 145 >gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] Length = 319 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 5/149 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M +R ++ E + +N W+P +VP+ +D+ W+S L E+ + Sbjct: 1 MTLSRVSAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQS---LNAAEQQLTI 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141 R +++ ++ P L +F EAVH+ ++ I ++L D Sbjct: 58 RVFTGLTLLDTIQNIAGAPSLMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTRD 117 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLS 170 + E + KA L + + Sbjct: 118 VDAAYAWSEENAPLQRKAQIILAHYASDE 146 >gi|153010278|ref|YP_001371492.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum anthropi ATCC 49188] gi|151562166|gb|ABS15663.1| Ribonucleoside-diphosphate reductase [Ochrobactrum anthropi ATCC 49188] Length = 328 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 19 NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 76 DTIQNAVGAVKLMDDAATPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 135 Query: 151 EVPSITAK 158 E + K Sbjct: 136 ENEFLQRK 143 >gi|183598095|ref|ZP_02959588.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827] gi|188020253|gb|EDU58293.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827] Length = 323 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D++ W N LT E+ + R Sbjct: 14 NWNRIEDDKDLEVWNRLTTNFWLPEKIPLSNDISSW---NTLTAAEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L D + + Sbjct: 71 DTIQNTVGAPSLMSDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYT 166 E ++ KA + Y Sbjct: 131 ENSALQNKAKIIMSYY 146 >gi|156086328|ref|XP_001610573.1| ribonucleoside-diphosphate reductase beta subunit [Babesia bovis T2Bo] gi|154797826|gb|EDO07005.1| ribonucleoside-diphosphate reductase beta subunit, putative [Babesia bovis] Length = 329 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 14/151 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + ++ +L ++ + P+ Y W Y N+ W + + + L Sbjct: 16 LEQHNETLLKENANRWVMFPIHYDALWAMYKEIENSFWAAEDFRFA---NERDTYSSLPT 72 Query: 77 DERLMIKRNLGFFASSE-SLVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 + R ++ + + + + S VA I L + PE R + Q E +HS F Sbjct: 73 ELRQLVVKLISYHNRLDRSEVARPATITLDLLADTQIPEARAFYGFQVSYENIHSELFGI 132 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQ 164 + +++ +VP AK W + Sbjct: 133 MSSAIP--------GTIDVPEADAKIEWLTR 155 >gi|304445906|pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes gi|304445907|pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes Length = 296 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ W N +T E+L R +++ ++ Sbjct: 30 EVWDRLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAIS 86 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + AF E+VH+ ++ I +L E F E ++ KA Sbjct: 87 LLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKI 146 Query: 162 ALQYTQ 167 + Y Sbjct: 147 IMSYYN 152 >gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] Length = 322 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + N W+P ++P+ +DLA W++ L+ E+ R ++ A +A Sbjct: 24 QVWERLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGLTLLDTAQATVGAVA 80 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + + F+ + P + KA Sbjct: 81 MIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQI 140 Query: 162 ALQYTQ 167 + Y + Sbjct: 141 IVDYYR 146 >gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small subunit; AltName: Full=Ribonucleotide reductase small subunit 1 gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit [Mycobacterium tuberculosis CDC1551] gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1 [Mycobacterium tuberculosis H37Ra] gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1 [Mycobacterium tuberculosis F11] gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CDC1551A] gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis W-148] gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + N W+P ++P+ +DLA W++ L+ E+ R ++ A +A Sbjct: 24 QVWERLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGLTLLDTAQATVGAVA 80 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + + F+ + P + KA Sbjct: 81 MIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQI 140 Query: 162 ALQYTQ 167 + Y + Sbjct: 141 IVDYYR 146 >gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] Length = 319 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE 135 >gi|18158911|pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158912|pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158913|pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158914|pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158915|pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158916|pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158917|pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158918|pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158919|pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158920|pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158921|pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158922|pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|48425146|pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425147|pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425148|pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425149|pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|193506844|pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein gi|193506845|pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein gi|3077614|emb|CAA70766.1| ribonucleotide reductase subunit R2F [Corynebacterium ammoniagenes] Length = 329 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ W N +T E+L R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAIS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + AF E+VH+ ++ I +L E F E ++ KA Sbjct: 88 LLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKI 147 Query: 162 ALQYTQ 167 + Y Sbjct: 148 IMSYYN 153 >gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] Length = 321 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 24 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 77 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 78 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE 137 >gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora CFBP1430] gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora ATCC 49946] gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC 49946] gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora CFBP1430] Length = 319 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 5/134 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L+ DE+ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLSADEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQ 164 + + AKA LQ Sbjct: 127 DNAPLQAKAQIILQ 140 >gi|255324325|ref|ZP_05365446.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] gi|255298655|gb|EET77951.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] Length = 329 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL WK+ LT+ E+ R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGAIS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + AF E+VH+ ++ I +L + F E ++ KA Sbjct: 88 LLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQKKAKI 147 Query: 162 ALQYTQ 167 L Y + Sbjct: 148 ILSYYK 153 >gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae TN] gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae Br4923] gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae] gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae Br4923] Length = 325 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Query: 40 GWAW-------EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 W W E + N W+P +VP+ +DL W LT E+ + R Sbjct: 16 NWNWLQDDKDAEVWDRLTGNFWLPEKVPVSNDLPSW---GTLTASEKQLTMRVFTGLTLL 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 73 DTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTAEIDEAFRWSE 132 Query: 151 EVPSITAKANWALQYTQ 167 E ++ KA ++Y + Sbjct: 133 ENNNLQRKAKIVMEYYR 149 >gi|311741200|ref|ZP_07715024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] gi|311303370|gb|EFQ79449.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] Length = 329 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL WK+ LT+ E+ R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGAIS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + AF E+VH+ ++ I +L + F E ++ KA Sbjct: 88 LLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQKKAKI 147 Query: 162 ALQYTQ 167 L Y + Sbjct: 148 ILSYYK 153 >gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium tuberculosis str. Erdman] Length = 321 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + N W+P ++P+ +DLA W++ L+ E+ R ++ A +A Sbjct: 24 QVWERLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGLTLLDTAQATVGAVA 80 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF E+VH+ ++ I ++L + + F+ + P + KA Sbjct: 81 MIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQI 140 Query: 162 ALQYTQ 167 + Y + Sbjct: 141 IVDYYR 146 >gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] Length = 320 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVN 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTDTNPYLQKKAQ 135 Query: 161 WALQYTQT 168 + Q Sbjct: 136 IINEIYQN 143 >gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] Length = 321 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 24 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 77 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 78 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE 137 >gi|9629834|ref|NP_045318.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 1] gi|266916|sp|Q01319|RIR2_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|330772|gb|AAA46063.1| ribonucleotide reductase small subunit [Bovine herpesvirus 1] gi|995642|emb|CAA90928.1| UL40 [Bovine herpesvirus 1] gi|1149578|emb|CAA88899.1| UL40 [Bovine herpesvirus 1] gi|2653307|emb|CAA06093.1| ribonucleotide reductase small subunit [Bovine herpesvirus type 1.1] Length = 314 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 16/146 (10%) Query: 38 KYGWAWE--------KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 KY + +E + N W+ TE P+ DD L+ E + F Sbjct: 13 KYKYFYETECPDLDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + + Y + Q E VHS + I L ++ Y Sbjct: 70 SAADDLVNVNLGD-LSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGY 128 Query: 150 RE----VPSITAKANWALQYTQTLSS 171 E P++ K +W + S Sbjct: 129 VEGALGDPAVRRKVDWLERRVAAAES 154 >gi|328543067|ref|YP_004303176.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum gilvum SL003B-26A1] gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum gilvum SL003B-26A1] Length = 325 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 7/161 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 D L+ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 11 PDAVNWNRLRDPKDLEIWNRLTVNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTG 67 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 +++ A+ P L AF EAVH+ ++ + ++L E+ + Sbjct: 68 LTLLDTIQNMIGAPALMADAITPHEEAVLTNIAFMEAVHARSYSSVFSTLCR-TAEVDDA 126 Query: 149 YR---EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 +R E P + AK+ L +P L Sbjct: 127 FRWSAENPQLQAKSRLILNEYDASGTPLKKKIASVFLESFL 167 >gi|328553048|gb|AEB23540.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens TA208] Length = 195 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 7/152 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKAN- 160 H+ + + L A E VH+ ++ I +L E E+F + + KA Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFEWVKNNRFLQKKART 137 Query: 161 WALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 L Y + + S L L + Sbjct: 138 IVLIYKAVQKNDDISLFKAMVASVFLESFLFY 169 >gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] Length = 317 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 9/151 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W S T+ E+ + R +++ + A Sbjct: 18 EIWNRLTSNFWLPEKVPLSNDIQSWSSF---TEAEKQLTIRVFTGLTLLDTIQSKAGAPA 74 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161 + + P F EAVH+ ++ I ++L + E F + KA Sbjct: 75 LMKDALTPHEEAVFANICFMEAVHARSYSSIFSTLCTTVEIDEAFRWAELNKDLQRKA-- 132 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + + + K+ S L + + Sbjct: 133 --KLIEACYTDDTQPLKKKIASVFLESFMFY 161 >gi|296118681|ref|ZP_06837257.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968170|gb|EFG81419.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 329 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ WK +T E+ R +++ ++ Sbjct: 31 EVWDRLTGNFWLPEKIPVSNDIQSWKK---MTPQEQQATMRVFTGLTLLDTIQGTVGAIS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + +F E+VH+ ++ I +L E F E ++ KA Sbjct: 88 LVPDAETMHEEAVYTNISFMESVHAKSYSNIFMTLATTPQINEAFRWSEENENLQRKAKI 147 Query: 162 ALQYTQ 167 + Y + Sbjct: 148 IMSYYR 153 >gi|227502986|ref|ZP_03933035.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|306836783|ref|ZP_07469743.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] gi|227076047|gb|EEI14010.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|304567329|gb|EFM42934.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] Length = 329 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + N W+P +VP+ +DL WK+ LT+ E+ R Sbjct: 20 NWNNIPDDKDLEVWERLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 77 DTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSE 136 Query: 151 EVPSITAKANWALQYTQ 167 E ++ KA L Y Sbjct: 137 ENENLQKKAKIILSYYN 153 >gi|57790965|ref|YP_182369.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1] gi|5918981|gb|AAD56212.1|AF168792_13 ribonucleotide reductase small subunit [Gallid herpesvirus 1] Length = 310 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 8/129 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + N+W E+ D + LT +E K F A+++ L+ + Sbjct: 16 DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKLVFAFLAAADDLINLD 72 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSI 155 I + + + + Y Q E VHS T+ + L + + Y P+I Sbjct: 73 IG-NLMTLFLHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARDRYVTEAIKDPAI 131 Query: 156 TAKANWALQ 164 K +W + Sbjct: 132 KKKIDWLNR 140 >gi|323145837|gb|ADX32078.1| hypothetical protein [Pseudomonas phage P3_CHA] gi|323146023|gb|ADX32263.1| hypothetical protein [Pseudomonas phage PAK_P3] Length = 344 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 10/127 (7%) Query: 35 LPLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLG 87 P Y WA E + A + HW + + DD + S +GL ++ + ++ + L Sbjct: 16 RPFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLS 75 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--EL 145 F + V + ++ N E R +L+ A E VH + G +G + Sbjct: 76 MFTEMDRTVGEGY-TKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGDWKA 134 Query: 146 FNMYREV 152 F Y+E+ Sbjct: 135 FASYKEM 141 >gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] Length = 319 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 5/149 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M +R ++ E + +N W+P +VP+ +D+ W++ L E+ + Sbjct: 1 MTLSRVSAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTI 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141 R +++ A+ P L +F EAVH+ ++ I ++L D Sbjct: 58 RVFTGLTLLDTIQNVAGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKD 117 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLS 170 + E + KA L + + Sbjct: 118 VDAAYAWSEENTPLQRKAQIVLTHYASDE 146 >gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 320 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 10 NWNEIEDIIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 124 WTNSNDCLQKKAK 136 >gi|216905873|ref|YP_002333501.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 9] gi|216410027|dbj|BAH02445.1| small subunit of ribonucleotide reductase [Equid herpesvirus 9] Length = 321 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DDL LT ER + F ++++ LV N Sbjct: 28 PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI-ITSLGLD---EGELFNMYREVPSI 155 + + + + Y + Q E HS + I + G D +I Sbjct: 85 LGD-LSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAI 143 Query: 156 TAKANW 161 K W Sbjct: 144 KRKVAW 149 >gi|209877300|ref|XP_002140092.1| ribonucleoside-diphosphate reductase beta subunit family protein [Cryptosporidium muris RN66] gi|209555698|gb|EEA05743.1| ribonucleoside-diphosphate reductase beta subunit family protein [Cryptosporidium muris RN66] Length = 357 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 14/176 (7%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L L P+KY W Y W + DL +++ +R Sbjct: 15 ETILLDNPFRWVLFPIKYNRLWNFYKKYEVVFWTAEVISYIKDL------GIISEVDRRF 68 Query: 82 IKRN-LGF----FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 + L F F S+ L + + + PE R Y E ++ F I Sbjct: 69 VDSIELLFSSRVFISNTGLDSVLVACEFLSQIQVPEARGYFSFTICMENIYKEVFMNYID 128 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + + E +E AK + L+ ++ + +++L S+ F Sbjct: 129 VIRKYKSE---NIKEYDHKEAKMRYHLKLKDIITDNQHYQRKIEFANQLLDSSVPF 181 >gi|261494146|ref|ZP_05990649.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310312|gb|EEY11512.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 325 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ + D ER ++ R + A Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TINDHERHVLTRAM--LA 64 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +YR+ PE A E H + +++ LGL E+F+ Sbjct: 65 ISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQI 122 Query: 150 REVPSITAKANWALQYTQTLSS 171 E+ + + + + + + Sbjct: 123 HEIEPLMNRIRYMESFMKDKDA 144 >gi|261753311|ref|ZP_05997020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] gi|261743064|gb|EEY30990.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] Length = 327 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 18 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 75 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 134 Query: 151 EVPSITAK 158 E + K Sbjct: 135 ENEFLQRK 142 >gi|163844498|ref|YP_001622153.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis ATCC 23445] gi|163675221|gb|ABY39331.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 329 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 77 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136 Query: 151 EVPSITAK 158 E + K Sbjct: 137 ENEFLQRK 144 >gi|261496013|ref|ZP_05992423.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308263|gb|EEY09556.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 325 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ + D ER ++ R + A Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TINDHERHVLTRAM--LA 64 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +YR+ PE A E H + +++ LGL E+F+ Sbjct: 65 ISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQI 122 Query: 150 REVPSITAKANWALQYTQTLSS 171 E+ + + + + + + Sbjct: 123 HEIEPLMNRIRYMESFMKDKDA 144 >gi|83642896|ref|YP_438184.1| ORF60 [Ovine herpesvirus 2] gi|61971010|gb|AAX58095.1| ORF60 [Ovine herpesvirus 2] gi|78127895|gb|ABB22279.1| ribonucleotide-reductase small subunit-like protein [Ovine herpesvirus 2] Length = 305 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 13/156 (8%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ N W P ++ + D+ K L++ E K F +E+LV NI Sbjct: 16 FFDLTQETFQNRWFPAQINLTADV---KCLGSLSEKEVAFYKYLFTFLGMAETLVNFNID 72 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELF-NMYREVPSITA 157 + + + Y Q E VH + I+ L + E F E + Sbjct: 73 ELVAG-FEIHDVKHYYCEQMAMECVHGKVYFNILNMLFKNNIAETRAFAESVLEDEPLRK 131 Query: 158 KANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 K W +T S + L + F+ Sbjct: 132 KLQWLEGKIKTAESAAEKVLI-----FYLIEGIFFI 162 >gi|306840845|ref|ZP_07473592.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO2] gi|306289240|gb|EFM60489.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO2] Length = 327 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 18 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 75 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 134 Query: 151 EVPSITAK 158 E + K Sbjct: 135 ENEFLQRK 142 >gi|270265355|ref|ZP_06193616.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia odorifera 4Rx13] gi|270040759|gb|EFA13862.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia odorifera 4Rx13] Length = 323 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W + LT E+ + R +++ A Sbjct: 25 EVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGLTLLDTIQNTVGAPA 81 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P F EAVH+ ++ I ++L D + + E ++ KA+ Sbjct: 82 LIADALTPHEEAVYSNIGFMEAVHARSYSSIFSTLCQTPDVDDAYRWSEENHALQKKAHI 141 Query: 162 ALQYTQT 168 L + ++ Sbjct: 142 ILAHYRS 148 >gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp. TM1040] gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Ruegeria sp. TM1040] Length = 338 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT DE+ + R +++ Sbjct: 39 EIWNRLTVNFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPT 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + + P L +F EAVH+ ++ + ++L + E F E + AK+ Sbjct: 96 LMQDAITPHEEAVLSNISFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRL 155 Query: 162 ALQYTQTLSSP 172 L +SP Sbjct: 156 ILGEYDATASP 166 >gi|325496274|gb|EGC94133.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ECD227] Length = 319 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|256015100|ref|YP_003105109.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti CCM 4915] gi|255997760|gb|ACU49447.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti CCM 4915] Length = 329 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 77 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136 Query: 151 EVPSITAK 158 E + K Sbjct: 137 ENEFLQRK 144 >gi|225628773|ref|ZP_03786807.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti str. Cudo] gi|237817303|ref|ZP_04596295.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus str. 2308 A] gi|225616619|gb|EEH13667.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti str. Cudo] gi|237788116|gb|EEP62332.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus str. 2308 A] Length = 335 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 8/152 (5%) Query: 12 AGEKRVNVDDKRMLNARS---DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 E +N+ K R ++ E + N W+P +VP+ +D+ W Sbjct: 2 TEESFMNMQYKTATKGRPASVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSW 61 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L E+ + R +++ + + P L +F EAVH+ Sbjct: 62 ET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHA 118 Query: 129 HTFQYIITS--LGLDEGELFNMYREVPSITAK 158 ++ I ++ L D + + E + K Sbjct: 119 RSYSSIFSTLCLTPDVDDAYRWSEENEFLQRK 150 >gi|322385107|ref|ZP_08058754.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus cristatus ATCC 51100] gi|321270731|gb|EFX53644.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus cristatus ATCC 51100] Length = 321 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G ++L + + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTLQSESGVD 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + + E + Q F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRKDVRTAHEEAVFNNIQ-FMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] Length = 321 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L++ E+ ++ G Sbjct: 10 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSEPEKQLVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + + + P L F E+VH+ ++ I ++L + E+F Sbjct: 64 TLLDTLQSESGIDQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 123 Query: 148 MYREVPSITAKAN 160 P + AKA Sbjct: 124 WTNTNPYLQAKAE 136 >gi|325955614|ref|YP_004239274.1| ribonucleotide reductase [Weeksella virosa DSM 16922] gi|323438232|gb|ADX68696.1| ribonucleotide reductase [Weeksella virosa DSM 16922] Length = 324 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 5/147 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + W+ +EV D + S L ER IK +L A Sbjct: 7 RINYKPFEYPEILTFTEAINKAFWVHSEVDFTADTQDFHSHLNL--AERTAIKHSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V IY H PE A E HS + ++ LG ++ F Sbjct: 65 QIEVAVKTFWGD-IYDHFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNDD--FQTLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYW 177 ++P I + ++ + S + Sbjct: 122 DIPVIKGRVDYLSNALKDAKSSDRKSY 148 >gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 320 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W++ L+ E+ + R +++ A Sbjct: 22 EVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTELTLLDTIQNTVGAPA 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L +F EAVH+ ++ I ++L + F + KA Sbjct: 79 LMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQL 138 Query: 162 ALQYTQTLS 170 L Y Q Sbjct: 139 MLGYYQADE 147 >gi|170765644|ref|ZP_02900455.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] gi|170124790|gb|EDS93721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] Length = 319 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|23500072|ref|NP_699512.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis 1330] gi|62317763|ref|YP_223616.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 1 str. 9-941] gi|83269749|ref|YP_419040.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis biovar Abortus 2308] gi|148558197|ref|YP_001257348.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ovis ATCC 25840] gi|161620390|ref|YP_001594276.1| ribonucleotide-diphosphate reductase subunit beta [Brucella canis ATCC 23365] gi|189023015|ref|YP_001932756.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus S19] gi|254691263|ref|ZP_05154517.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|254695435|ref|ZP_05157263.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|254699051|ref|ZP_05160879.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|254699599|ref|ZP_05161427.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|254706144|ref|ZP_05167972.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|254711557|ref|ZP_05173368.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|254712154|ref|ZP_05173965.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|254715225|ref|ZP_05177036.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|254720036|ref|ZP_05181847.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|254732497|ref|ZP_05191075.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|256029807|ref|ZP_05443421.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|256059454|ref|ZP_05449656.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|256157977|ref|ZP_05455895.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|256253064|ref|ZP_05458600.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|256256449|ref|ZP_05461985.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|260167086|ref|ZP_05753897.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. F5/99] gi|260544998|ref|ZP_05820819.1| ribonucleotide reductase [Brucella abortus NCTC 8038] gi|260568371|ref|ZP_05838840.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40] gi|260756870|ref|ZP_05869218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|260760301|ref|ZP_05872649.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|260763541|ref|ZP_05875873.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260882684|ref|ZP_05894298.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|261215815|ref|ZP_05930096.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|261216944|ref|ZP_05931225.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|261220160|ref|ZP_05934441.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|261313587|ref|ZP_05952784.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|261319174|ref|ZP_05958371.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|261319814|ref|ZP_05959011.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|261323425|ref|ZP_05962622.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|261750056|ref|ZP_05993765.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|261756480|ref|ZP_06000189.1| ribonucleotide reductase [Brucella sp. F5/99] gi|265985045|ref|ZP_06097780.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|265986823|ref|ZP_06099380.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|265996493|ref|ZP_06109050.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|297249809|ref|ZP_06933510.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 5 str. B3196] gi|306839412|ref|ZP_07472226.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF 2653] gi|306845616|ref|ZP_07478185.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO1] gi|23463663|gb|AAN33517.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella suis 1330] gi|62197956|gb|AAX76255.1| NrdF, ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 1 str. 9-941] gi|82940023|emb|CAJ13054.1| Ribonucleotide reductase [Brucella melitensis biovar Abortus 2308] gi|148369482|gb|ABQ62354.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella ovis ATCC 25840] gi|161337201|gb|ABX63505.1| Ribonucleoside-diphosphate reductase [Brucella canis ATCC 23365] gi|189021589|gb|ACD74310.1| Ribonucleotide reductase [Brucella abortus S19] gi|260098269|gb|EEW82143.1| ribonucleotide reductase [Brucella abortus NCTC 8038] gi|260155036|gb|EEW90117.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40] gi|260670619|gb|EEX57559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|260673962|gb|EEX60783.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260676978|gb|EEX63799.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|260872212|gb|EEX79281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|260917422|gb|EEX84283.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|260918744|gb|EEX85397.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|260922033|gb|EEX88601.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|261292504|gb|EEX96000.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|261298397|gb|EEY01894.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|261299405|gb|EEY02902.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|261302613|gb|EEY06110.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|261736464|gb|EEY24460.1| ribonucleotide reductase [Brucella sp. F5/99] gi|261739809|gb|EEY27735.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|262550790|gb|EEZ06951.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|264659020|gb|EEZ29281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|264663637|gb|EEZ33898.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|297173678|gb|EFH33042.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 5 str. B3196] gi|306273937|gb|EFM55764.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO1] gi|306405535|gb|EFM61800.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF 2653] Length = 329 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 77 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136 Query: 151 EVPSITAK 158 E + K Sbjct: 137 ENEFLQRK 144 >gi|25028975|ref|NP_739029.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium efficiens YS-314] gi|259508040|ref|ZP_05750940.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] gi|23494262|dbj|BAC19229.1| ribonucleotide reductase beta chain [Corynebacterium efficiens YS-314] gi|259164381|gb|EEW48935.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] Length = 334 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ W LTD E+ R +++ ++ Sbjct: 36 EVWDRLTGNFWLPEKIPVSNDIKSW---GTLTDKEKQATMRVFTGLTLLDTIQGTVGAVS 92 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + L AF E+VH+ ++ I +L + F E ++ KA Sbjct: 93 LLPDAESLHEEAVLTNIAFMESVHAKSYSNIFMTLASTPQINDAFRWSEENEALQRKAKI 152 Query: 162 ALQYTQ 167 L Y + Sbjct: 153 ILAYYE 158 >gi|327198239|ref|YP_004306815.1| putative ribonucleotide reductase B subunit [Pseudomonas phage KPP10] gi|297591765|dbj|BAJ09185.1| putative ribonucleotide reductase B subunit [Pseudomonas phage KPP10] Length = 339 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 10/127 (7%) Query: 35 LPLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLG 87 P Y WA E + A + HW + + DD + S +GL ++ + ++ + L Sbjct: 11 RPFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLS 70 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--EL 145 F + V + ++ N E R +L+ A E VH + G +G + Sbjct: 71 MFTEMDRTVGEGY-TKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGDWKA 129 Query: 146 FNMYREV 152 F Y+E+ Sbjct: 130 FASYKEM 136 >gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] Length = 321 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 23 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 76 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 77 ALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 136 >gi|294853320|ref|ZP_06793992.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] gi|294818975|gb|EFG35975.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] Length = 329 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 77 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136 Query: 151 EVPSITAK 158 E + K Sbjct: 137 ENEFLQRK 144 >gi|17567153|ref|NP_508269.1| hypothetical protein F19G12.2 [Caenorhabditis elegans] gi|10864352|gb|AAG24065.1| Hypothetical protein F19G12.2 [Caenorhabditis elegans] Length = 668 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYW 177 E +HS + ++ + D+ E LFN I AKA+W L++ ++P + Sbjct: 445 IAVENIHSEMYAKLLEAYIRDDAERNILFNAITTFKFIKAKADWCLRWISDHNAP----F 500 Query: 178 NKRRRSRILTRSLRF 192 ++R + + F Sbjct: 501 SERLAAFAAVEGIFF 515 >gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] Length = 322 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+D E+ + G Sbjct: 10 NWNAIEDIIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + + + + + P L F E+VH+ ++ I ++L E+F Sbjct: 64 TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIDEIFE 123 Query: 148 MYREVPSITAKAN 160 P + KA Sbjct: 124 WTNTNPYLQKKAE 136 >gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] Length = 324 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT E+ + R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIPSW---GTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P L AF E+VH+ ++ I ++L E+ + + E ++ KA Sbjct: 83 LIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCS-TAEIDDAFRWSEENSNLQRKAE 141 Query: 161 WALQYTQ 167 L+Y + Sbjct: 142 IVLEYYR 148 >gi|254702722|ref|ZP_05164550.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] Length = 335 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L E+ + R Sbjct: 26 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 82 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 83 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 142 Query: 151 EVPSITAK 158 E + K Sbjct: 143 ENEFLQRK 150 >gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella bacilliformis KC583] gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella bacilliformis KC583] Length = 324 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 5/127 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W+S LT++E+ + R +++ ++ Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGLTLLDTVQNTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161 + L AF EAVH+ ++ I ++L L D + F E + KA Sbjct: 83 LMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFRWSEENVYLQKKAKL 142 Query: 162 ALQYTQT 168 L++ + Sbjct: 143 VLEHYEA 149 >gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium ulcerans Agy99] gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium ulcerans Agy99] Length = 324 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT E+ + R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIPSW---GTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P L AF E+VH+ ++ I ++L E+ + + E ++ KA Sbjct: 83 LIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCS-TAEIDDAFRWSEENSNLQRKAE 141 Query: 161 WALQYTQ 167 L+Y + Sbjct: 142 IVLEYYR 148 >gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] Length = 320 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTNTNPYLQKKAE 135 >gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] Length = 321 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 24 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 77 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 78 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQRKAE 137 >gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974] gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974M2] gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] Length = 320 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTNTNPYLQKKAE 135 >gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T46] gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF2; AltName: Full=Ribonucleoside-diphosphate reductase nrdF2; AltName: Full=Ribonucleotide reductase R2-2 small subunit gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium tuberculosis] gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Mycobacterium tuberculosis CDC1551] gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2 [Mycobacterium tuberculosis H37Ra] gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2 [Mycobacterium tuberculosis F11] gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CDC1551A] gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis W-148] gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 4207] Length = 324 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT E+ + R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIPSW---GTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P L AF E+VH+ ++ I ++L E+ + + E ++ KA Sbjct: 83 LIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCS-TAEIDDAFRWSEENRNLQRKAE 141 Query: 161 WALQYTQ 167 LQY + Sbjct: 142 IVLQYYR 148 >gi|221231890|ref|YP_002511042.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] Length = 320 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALREDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|200386806|ref|ZP_03213418.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603904|gb|EDZ02449.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 319 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P ++P+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKMPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWAL 163 E P + KA L Sbjct: 127 ENPPLQRKAQIIL 139 >gi|325291517|ref|YP_004277381.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium sp. H13-3] gi|325059370|gb|ADY63061.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium sp. H13-3] Length = 324 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W L +E+ + R Sbjct: 15 NWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---GTLKPEEQTLTIRVFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + + + P L +F EAVH+ ++ I ++L D + + Sbjct: 72 DTIQNGVGSVRLMADSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYRWSE 131 Query: 151 EVPSITAKANWALQYTQT 168 E + K+ ++ + Sbjct: 132 ENEFLQRKSALIMREYDS 149 >gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium resistens DSM 45100] Length = 332 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 14/136 (10%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 R ++ E + N W+P +VP+ +DL W NGL+D ER + R Sbjct: 19 RIRPINWNKVQDDKDLEVWQRLTANFWLPEKVPLSNDLKDW---NGLSDIERTLTMRVFT 75 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 +++ A ++ + AF ++VH+ ++ +F+ Sbjct: 76 GLTLLDTMQATVGEISQIQDAQTEHEEAVYTNIAFMQSVHARSYS-----------SVFS 124 Query: 148 MYREVPSITAKANWAL 163 PSI A WA+ Sbjct: 125 TLANTPSINAAYEWAV 140 >gi|12084869|ref|NP_073334.1| ribonucleotide reductase subunit 2 [Meleagrid herpesvirus 1] gi|11095873|gb|AAG30080.1|AF282130_43 UL40 ribonucleotide reductase small subunit [Meleagrid herpesvirus 1] gi|12025152|gb|AAG45778.1|AF291866_45 UL40 ribonucleotide reductase, small subunit [Meleagrid herpesvirus 1] Length = 355 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 8/141 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL L++DE+ + F ++++ LV N Sbjct: 63 PDIGNLRSLSIMNRWTETEFVIADDLED---VGKLSEDEKNFYRFLFTFLSAADDLVNLN 119 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI-ITSLGLD---EGELFNMYREVPSI 155 I ++ + + Y Q EAVHS + I + D E P+I Sbjct: 120 I-DSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 178 Query: 156 TAKANWALQYTQTLSSPSFHY 176 +K W + +S + Y Sbjct: 179 LSKLEWLERRVAECTSIAEKY 199 >gi|218680499|ref|ZP_03528396.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli CIAT 894] Length = 324 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 5/144 (3%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 9 SRVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVF 65 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144 +++ + + P L +F EAVH+ ++ I ++L D Sbjct: 66 TGLTLLDTIQNGVGSIRLMEDAITPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDN 125 Query: 145 LFNMYREVPSITAKANWALQYTQT 168 + E + K+ ++ + Sbjct: 126 AYRWSEENEFLQRKSALIMEQYAS 149 >gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 328 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 5/118 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + N W+P ++P+ +D+ W++ +T E+ + ++L ++ Sbjct: 31 DIWDRLTTNFWLPEKIPVSNDVQSWRN---MTAQEQDATLKVFTGLTVLDTLQGTVGAVS 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + H P+ AF E+VH+ ++ I +L E F RE + KA Sbjct: 88 LIPHAVTPQEEAVYTNIAFMESVHAKSYSNIFMTLASTPEIDEAFRWARENEHMQYKA 145 >gi|84997706|ref|XP_953574.1| ribonucleoside reductase [Theileria annulata] gi|65304571|emb|CAI72896.1| ribonucleoside reductase, putative [Theileria annulata] Length = 332 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +D+ +L + + P+++ W Y NN W + DD+ L Sbjct: 16 NDEILLKENHNRWVMFPIEHDTFWILYKEVENNFWAAEDFIFTDDIKLLYQLPKPI---F 72 Query: 80 LMIKRNLGFFASSESLVA---NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI-- 134 + L F + ++ + +I L + + E R + Q +E +H+ T + Sbjct: 73 NTLLNLLSFHINLDNKLICRPVDITLDLLSEVQIAEARAFYGFQLTDENIHTETISSMFQ 132 Query: 135 -----ITSLGLDEGELF 146 + + + LF Sbjct: 133 LFNQQLDTNIVSSNTLF 149 >gi|262285102|gb|ACY41130.1| ribonucleotide reductase subunit 2 [Wood mouse herpesvirus] Length = 305 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 13/147 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W P+++P+ D+A L +R K F +E LV NI + + + Sbjct: 25 KNRWFPSQIPLSSDVA---GIAQLNATDREFYKFLFVFLGLAEKLVNFNI-EDLVKEFNC 80 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYT 166 + Y Q E +H + I+ + E P++ AK +W Sbjct: 81 HDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPTLKAKLDWLHTRV 140 Query: 167 QTLSSPSFHYWNKRRRSRILTRSLRFL 193 + + ++ +L + F+ Sbjct: 141 K-----NTKTRAEKVLIFLLIEGIFFI 162 >gi|241206478|ref|YP_002977574.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860368|gb|ACS58035.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 324 Score = 69.5 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + + + L +F EAVH+ ++ I ++L D + + Sbjct: 72 DTIQNGVGSIRLMEDAATSHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYRWSE 131 Query: 151 EVPSITAKANWALQYTQT 168 E + K+ ++ ++ Sbjct: 132 ENEFLQRKSALIMEQYRS 149 >gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W++ L+ E+ + R +++ A Sbjct: 22 EVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNTVGAPA 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P L +F EAVH+ ++ I ++L + F + KA Sbjct: 79 LMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQCKAQL 138 Query: 162 ALQYTQTLS 170 L Y Q Sbjct: 139 MLGYYQADE 147 >gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] Length = 319 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi] gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi] Length = 330 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 65/175 (37%), Gaps = 10/175 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACN-NHWMPTEVP--MQDDLALWKSKNGLTDDE 78 + +L+ L P++Y WE Y + W + +++D++ + + + + Sbjct: 15 EEILSENPHRFTLFPIQYPKLWEIYKKRLASSIWSVEQFDQIIRNDIS---KLSEICNSD 71 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 IK L F ++ N+ A + + E + + + + +H + + + Sbjct: 72 HSFIKIILAFLVANCK-QKTNLWGAF-KDIQILEAKHFHGFRLAMKNIHYEMYCNLFE-I 128 Query: 139 GLDEGELFNMYREV-PSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +E E + ++ S K+ + ++ + + S +I + F Sbjct: 129 LTEETERSELIEKMINSTMKKSQYTKKWLNSDNLFSERLIGLVCIEQIFLSASFF 183 >gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17570] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|300932708|ref|ZP_07147964.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium resistens DSM 45100] Length = 331 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W L + ER R +++ ++ Sbjct: 33 EVWDRLTANFWLPEKVPLSNDVQSW---GTLNEVERQTTMRVFTGLTMLDTIQGTVGAVS 89 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + +F E+VH+ ++ I +L + F E + KA Sbjct: 90 LINDAQTMHEEAVYTNISFMESVHAKSYSSIFMTLASTPEINDAFRWSEENEHLQNKAKI 149 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 L + + P KR+ + +L S F Sbjct: 150 ILDFYEG-DDPQ-----KRKIASVLLESFLFY 175 >gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus pyogenes M49 591] gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes NZ131] gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Streptococcus pyogenes NZ131] Length = 319 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNEFLQKKAQ 135 >gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Taiwan19F-14] gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Streptococcus pneumoniae GA04375] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus uberis 0140J] gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus uberis 0140J] Length = 319 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNEFLQKKAK 135 >gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 425 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 13/177 (7%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R KR N L P +Y ++ + +++W+ TE D+ +K++ +T Sbjct: 93 RDEQAQKRKTNIFEKRINLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKTR--IT 150 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D ER IK + + E V IY + PE A E H+ + +++ Sbjct: 151 DVERSAIKNTMLAISQIEVAVKGFWGD-IYHKMPKPEVGAVGATFAESEVRHADAYSHLL 209 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 LGL++ F + ++ P + + + + L F Sbjct: 210 EILGLNKE--FKLLKKKPVMMKRVQYL--------ETALKNAKSEDNKEYSESILLF 256 >gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae TIGR4] gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus pneumoniae TIGR4] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|256111772|ref|ZP_05452743.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] gi|265993237|ref|ZP_06105794.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] gi|262764107|gb|EEZ10139.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] Length = 138 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 7/137 (5%) Query: 17 VNVDDKRMLNARS---DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +N+ K R ++ E + N W+P +VP+ +D+ W++ Sbjct: 1 MNMQHKTATKGRPASVRAINWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET--- 57 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L E+ + R +++ + + P L +F EAVH+ ++ Sbjct: 58 LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSS 117 Query: 134 IITSLGLDEGELFNMYR 150 I ++L L + + YR Sbjct: 118 IFSTLCLTPD-VDDAYR 133 >gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae R6] gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae D39] gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Hungary19A-6] gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae G54] gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae JJA] gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae P1031] gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae 70585] gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae AP200] gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus pneumoniae 670-6B] gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I, function unknown [Streptococcus pneumoniae R6] gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae D39] gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Hungary19A-6] gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus pneumoniae G54] gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 70585] gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae JJA] gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae P1031] gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV104] gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae OXC141] gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV200] gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae AP200] gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 670-6B] gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA41301] gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17545] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] Length = 320 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE 135 >gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] Length = 319 Score = 69.1 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L +E+ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAW---NSLNAEEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQ 164 E + AKA LQ Sbjct: 127 ENAPLQAKAQIILQ 140 >gi|312130784|ref|YP_003998124.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132] gi|311907330|gb|ADQ17771.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132] Length = 324 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 13/162 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + +W+ +EV D + S L+ ER +K +L A Sbjct: 7 RINYKPFEYPEILTFTSAINKAYWVHSEVDFTADTQDFHS--HLSPAERSAVKNSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y H PE A E HS + ++ LG + F Sbjct: 65 QIEVAVKTFWG-NLYDHFPKPEFNGLGTTFAECEFRHSEAYSRLLEVLGYNNE--FQKLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E+P I + + + S R + + + F Sbjct: 122 EIPVIKQRVEYLGGVLKDTRS--------EDRKKYVISLILF 155 >gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] Length = 320 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE 135 >gi|146301802|ref|YP_001196393.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101] gi|146156220|gb|ABQ07074.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101] Length = 324 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 13/162 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + +W+ TEV D + L+ E+ +K +L A Sbjct: 7 RVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFH--AHLSLAEKTAVKNSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + IY H PE A E HS + ++ LG ++ F Sbjct: 65 QIEVAV-KSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +VP I + ++ + S + + + F Sbjct: 122 DVPVIRRRVDYLSNVLKDTKSQD--------NRKYMVSLILF 155 >gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] Length = 320 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE 135 >gi|297567587|ref|YP_003686558.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946] gi|297567764|ref|YP_003686735.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946] gi|296852036|gb|ADH65050.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946] gi|296852213|gb|ADH65227.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946] Length = 323 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD W L +ER ++ L ++L + + Sbjct: 17 FWDQNVRQFWVDEEIPLADDKLTW---TTLAPEERETYEKVLVGLTLLDTLQGGVGMPLL 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGE-LFNMYREVPSITAK 158 + + + + + L E +H+ ++ I ++L L E LF P + AK Sbjct: 74 VQTMESAQVKAVLSFMGAMEQMHAKSYSLIFSTLSPLPRIETLFRWAEGHPLLQAK 129 >gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] Length = 322 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE 135 >gi|239833484|ref|ZP_04681812.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum intermedium LMG 3301] gi|239821547|gb|EEQ93116.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum intermedium LMG 3301] Length = 328 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W++ L +E+ + R Sbjct: 19 NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKREEKQLTIRVFTGLTLL 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYR 150 +++ + + P L +F EAVH+ ++ I ++ L D + + Sbjct: 76 DTIQNAVGAVKLMDDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 135 Query: 151 EVPSITAK 158 E + K Sbjct: 136 ENEFLQRK 143 >gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified eubacterium SCB49] gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified eubacterium SCB49] Length = 424 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 9/173 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + +KR ++D+ + L P +Y +E + +++W+ TE D+ Sbjct: 83 EVAKAYILYRNKRTQERKTDIFERRISLKPYEYPQLYEYVPAIRHSYWIHTEFNFTSDIQ 142 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K++ L + ER IK + + E V + R + PE A E Sbjct: 143 DFKTR--LNEVERSAIKNTMLAISQIEVAVKSFWGDLHLR-MPKPEIGAVGSTFAESEVR 199 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 H+ + +++ LGL++ F ++ P I + + + S + + Sbjct: 200 HADAYSHLLEILGLNKE--FKALKKKPVIMKRVQYLESALRNSKSDDNEEYAE 250 >gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] Length = 320 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNVEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAE 135 >gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] Length = 320 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L E+F P + KA Sbjct: 76 ALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE 135 >gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 322 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 + + N W+P +VP+ +D A W++ LT E+ R ++ A V Sbjct: 24 QVWDRLTGNFWLPEKVPLSNDSASWQT---LTAQEQQTTVRVFTGLTLLDTTQATVGAVS 80 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I ++ P L AF E+VH+ ++ I ++L + F+ P + KA Sbjct: 81 MIADAVT-PHEEAVLTNIAFMESVHAKSYSSIFSTLCSTRQIDDAFDWSERNPHLQRKAQ 139 Query: 161 WALQYTQ 167 + Y + Sbjct: 140 IVVDYYR 146 >gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 317 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL WK L+ E+ ++K+ +G A ++L + + A+ Sbjct: 20 WDKATAQFWLDTRVPVSNDLLEWKK---LSTMEKEIVKKAVGGLALLDTLQSEEGLYALK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 +H + R L F E++H+ T+ I+ SL D E+++ P + KA Sbjct: 77 KHARTQKERAVLSNFMFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPMMQFKAE 133 >gi|253772463|ref|YP_003035294.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162613|ref|YP_003045721.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli B str. REL606] gi|297519661|ref|ZP_06938047.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli OP50] gi|242378238|emb|CAQ33013.1| nrdF, subunit of ribonucleoside-diphosphate reductase 2, beta subunit dimer and ribonucleoside-diphosphate reductase 2 [Escherichia coli BL21(DE3)] gi|253323507|gb|ACT28109.1| Ribonucleoside-diphosphate reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974514|gb|ACT40185.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli B str. REL606] gi|253978681|gb|ACT44351.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli BL21(DE3)] Length = 319 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|209762238|gb|ACI79431.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|320646030|gb|EFX15007.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. 493-89] gi|320651330|gb|EFX19761.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. H 2687] Length = 319 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|323941488|gb|EGB37671.1| ribonucleotide reductase [Escherichia coli E482] Length = 319 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ +W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPVWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella schoenbuchensis R1] Length = 324 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 8/146 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W S LT++ER + R +++ ++ Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAIS 82 Query: 104 IY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 + ++ E AF EAVH+ ++ I ++L + + F E ++ KA Sbjct: 83 LMADAITEHEEAVLTNI-AFMEAVHARSYSSIFSTLCSTAEVDDAFRWSEENANLQKKAT 141 Query: 161 WALQYTQTLSSPSFHYWNKRRRSRIL 186 L+ + S P L Sbjct: 142 LVLERYEA-SDPLKKKIASTLLESFL 166 >gi|291284009|ref|YP_003500827.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli O55:H7 str. CB9615] gi|290763882|gb|ADD57843.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli O55:H7 str. CB9615] Length = 319 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|24113980|ref|NP_708490.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 301] gi|30064043|ref|NP_838214.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 2457T] gi|110806691|ref|YP_690211.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 5 str. 8401] gi|24053093|gb|AAN44197.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2a str. 301] gi|30042299|gb|AAP18024.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2a str. 2457T] gi|110616239|gb|ABF04906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 5 str. 8401] gi|281602052|gb|ADA75036.1| Ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2002017] gi|313648326|gb|EFS12770.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri 2a str. 2457T] Length = 319 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|254037718|ref|ZP_04871776.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 1_1_43] gi|226839342|gb|EEH71363.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 1_1_43] Length = 319 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALMPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|16130590|ref|NP_417162.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|74313247|ref|YP_311666.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei Ss046] gi|89109469|ref|AP_003249.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli str. K-12 substr. W3110] gi|157162127|ref|YP_001459445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli HS] gi|170019072|ref|YP_001724026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ATCC 8739] gi|170082262|ref|YP_001731582.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|188492563|ref|ZP_02999833.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|193065983|ref|ZP_03047042.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|193070996|ref|ZP_03051924.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|194427830|ref|ZP_03060376.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194439440|ref|ZP_03071516.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|209920120|ref|YP_002294204.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SE11] gi|218696273|ref|YP_002403940.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 55989] gi|238901820|ref|YP_002927616.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|256019542|ref|ZP_05433407.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|256024812|ref|ZP_05438677.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 4_1_40B] gi|260845324|ref|YP_003223102.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O103:H2 str. 12009] gi|293448994|ref|ZP_06663415.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|300906827|ref|ZP_07124508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300916824|ref|ZP_07133528.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300922750|ref|ZP_07138839.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300930529|ref|ZP_07145925.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300949072|ref|ZP_07163119.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300957447|ref|ZP_07169660.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|301026690|ref|ZP_07190101.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301306007|ref|ZP_07212087.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|301327384|ref|ZP_07220633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|301645345|ref|ZP_07245292.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|307139368|ref|ZP_07498724.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli H736] gi|307314435|ref|ZP_07594040.1| Ribonucleoside-diphosphate reductase [Escherichia coli W] gi|312973113|ref|ZP_07787286.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1827-70] gi|331643364|ref|ZP_08344495.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331669414|ref|ZP_08370260.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331678654|ref|ZP_08379328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|2507306|sp|P37146|RIR4_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2 gi|303325061|pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli gi|303325062|pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked With Ferrous Ions gi|303325063|pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Nrdi gi|303325065|pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Nrdi gi|303325067|pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi gi|303325069|pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi gi|303325071|pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi With A Trapped Peroxide gi|303325073|pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi With A Trapped Peroxide gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|1800064|dbj|BAA16541.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli str. K12 substr. W3110] gi|73856724|gb|AAZ89431.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella sonnei Ss046] gi|157067807|gb|ABV07062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli HS] gi|169754000|gb|ACA76699.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739] gi|169890097|gb|ACB03804.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|188487762|gb|EDU62865.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|192926397|gb|EDV81032.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|192955654|gb|EDV86129.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|194414063|gb|EDX30339.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194421616|gb|EDX37627.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|209762244|gb|ACI79434.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209913379|dbj|BAG78453.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli SE11] gi|218353005|emb|CAU98821.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli 55989] gi|238863480|gb|ACR65478.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|257760471|dbj|BAI31968.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O103:H2 str. 12009] gi|291322084|gb|EFE61513.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|299879612|gb|EFI87823.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|300315803|gb|EFJ65587.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|300401428|gb|EFJ84966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300415890|gb|EFJ99200.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300420935|gb|EFK04246.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300451458|gb|EFK15078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300461585|gb|EFK25078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300838718|gb|EFK66478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|300846038|gb|EFK73798.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|301076379|gb|EFK91185.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|306906003|gb|EFN36524.1| Ribonucleoside-diphosphate reductase [Escherichia coli W] gi|309703041|emb|CBJ02373.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli ETEC H10407] gi|310333055|gb|EFQ00269.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1827-70] gi|315061957|gb|ADT76284.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli W] gi|315254452|gb|EFU34420.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 85-1] gi|315615063|gb|EFU95700.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 3431] gi|320198428|gb|EFW73030.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli EC4100B] gi|320656721|gb|EFX24609.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662264|gb|EFX29661.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320667315|gb|EFX34273.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323173041|gb|EFZ58672.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli LT-68] gi|323183202|gb|EFZ68599.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1357] gi|323377462|gb|ADX49730.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11] gi|323935630|gb|EGB31947.1| ribonucleotide reductase [Escherichia coli E1520] gi|323946352|gb|EGB42381.1| ribonucleotide reductase [Escherichia coli H120] gi|323960578|gb|EGB56205.1| ribonucleotide reductase [Escherichia coli H489] gi|323971479|gb|EGB66714.1| ribonucleotide reductase [Escherichia coli TA007] gi|324020305|gb|EGB89524.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 117-3] gi|324120035|gb|EGC13912.1| ribonucleotide reductase [Escherichia coli E1167] gi|331036835|gb|EGI09059.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331063082|gb|EGI34995.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331073484|gb|EGI44805.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332103018|gb|EGJ06364.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + ++F Sbjct: 63 TLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNEFLQKKAK 135 >gi|15803196|ref|NP_289228.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 EDL933] gi|15832793|ref|NP_311566.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. Sakai] gi|168750919|ref|ZP_02775941.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168755421|ref|ZP_02780428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168762471|ref|ZP_02787478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168768767|ref|ZP_02793774.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168774792|ref|ZP_02799799.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168778658|ref|ZP_02803665.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168787931|ref|ZP_02812938.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|168800561|ref|ZP_02825568.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|195938430|ref|ZP_03083812.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208808703|ref|ZP_03251040.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208813382|ref|ZP_03254711.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208819985|ref|ZP_03260305.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209400851|ref|YP_002272142.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|217327155|ref|ZP_03443238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|254794623|ref|YP_003079460.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. TW14359] gi|261225973|ref|ZP_05940254.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256769|ref|ZP_05949302.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. FRIK966] gi|12517115|gb|AAG57786.1|AE005496_9 ribonucleoside-diphosphate reductase 2, beta chain [Escherichia coli O157:H7 str. EDL933] gi|13363010|dbj|BAB36962.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli O157:H7 str. Sakai] gi|187769524|gb|EDU33368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188015002|gb|EDU53124.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189003218|gb|EDU72204.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189357305|gb|EDU75724.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189362069|gb|EDU80488.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189367242|gb|EDU85658.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189372097|gb|EDU90513.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189377142|gb|EDU95558.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208728504|gb|EDZ78105.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208734659|gb|EDZ83346.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740108|gb|EDZ87790.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209162251|gb|ACI39684.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209762240|gb|ACI79432.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209762242|gb|ACI79433.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209762246|gb|ACI79435.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|217319522|gb|EEC27947.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|254594023|gb|ACT73384.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. TW14359] gi|320189007|gb|EFW63666.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC1212] gi|320640665|gb|EFX10201.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. G5101] gi|326338609|gb|EGD62435.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1044] gi|326342863|gb|EGD66631.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1125] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|187734239|ref|YP_001881572.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii CDC 3083-94] gi|187431231|gb|ACD10505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii CDC 3083-94] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|323159821|gb|EFZ45793.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli E128010] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella rochalimae ATCC BAA-1498] gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. 1-1C] Length = 324 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W S LT++ER + R +++ ++ Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAIS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + L AF EAVH+ ++ I ++L ++ + F E + KA Sbjct: 83 LMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARL 142 Query: 162 ALQYTQTLS 170 L++ + Sbjct: 143 ILEHYEADE 151 >gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC BAA-2158] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 5/134 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N ++ DE+ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSISADEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQ 164 + + AKA LQ Sbjct: 127 DNAPLQAKAQIILQ 140 >gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide reductase 2) (R2f protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 11/163 (6%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ W N LT +E+ + R Sbjct: 10 NWNRIEDDKDLEVWNRLTTNFWLPEKIPLSNDITSW---NTLTTEEKKLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L L D + + Sbjct: 67 DTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYRWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + S+ KA L Y S+H+ K++ + + S F Sbjct: 127 KSFSLQNKAKIILNYY------SYHHPLKKKIASVFLESFLFY 163 >gi|320173468|gb|EFW48667.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae CDC 74-1112] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|293415927|ref|ZP_06658567.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|291432116|gb|EFF05098.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|260448266|gb|ACX38688.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1] gi|315137289|dbj|BAJ44448.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli DH1] Length = 319 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR 15-3] Length = 324 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 7/128 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +D+ W S LT++ER + R +++ + Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAIS 82 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 I ++ E AF EAVH+ ++ I ++L ++ + F E + KA Sbjct: 83 LIADAVTEHEEAVLTNI-AFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKAR 141 Query: 161 WALQYTQT 168 L++ + Sbjct: 142 LILEHYEA 149 >gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] Length = 322 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTDDER KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + KA+ Sbjct: 113 NYLLDTWVIEEPHLKYKAD 131 >gi|270339459|ref|YP_003331539.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1] gi|254940175|gb|ACT88318.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1] Length = 331 Score = 68.3 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 8/141 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DD+ L++ E + F ++++ LV N Sbjct: 38 PDINMLRSLSIANRWLETDLPIGDDIKD---VTTLSESELDFYRFLFTFLSAADDLVNLN 94 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155 + + + + Y + Q E VHS + I L + E Y P + Sbjct: 95 LG-NLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPEL 153 Query: 156 TAKANWALQYTQTLSSPSFHY 176 K W S + Y Sbjct: 154 ARKVEWLRTRIGECESIAEKY 174 >gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] Length = 322 Score = 68.3 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTDDER KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYAFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + KA+ Sbjct: 113 NYLLDTWVIEEPHLKYKAD 131 >gi|26249071|ref|NP_755111.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli CFT073] gi|227888210|ref|ZP_04006015.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 83972] gi|300986153|ref|ZP_07177743.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|301050518|ref|ZP_07197394.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|26109478|gb|AAN81681.1|AE016765_83 Ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli CFT073] gi|227834850|gb|EEJ45316.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 83972] gi|300297774|gb|EFJ54159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|300407907|gb|EFJ91445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|307554652|gb|ADN47427.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli ABU 83972] gi|315290985|gb|EFU50350.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 153-1] Length = 319 Score = 68.3 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAILSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|157159438|ref|YP_001463986.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli E24377A] gi|218555224|ref|YP_002388137.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI1] gi|300815921|ref|ZP_07096145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|157081468|gb|ABV21176.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E24377A] gi|218361992|emb|CAQ99598.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli IAI1] gi|300531850|gb|EFK52912.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] Length = 319 Score = 68.3 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp. CNPT3] gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp. CNPT3] Length = 424 Score = 68.3 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 13/162 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P +Y E + +++W+ TE D+ +K L+ ER +IKR + + Sbjct: 107 RINLKPYEYPEILEYVDAIRHSYWIHTEFNFTSDIQDFK--VRLSHPEREVIKRTMLAIS 164 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V IY + PE A E H + +++ LGL++ F+ Sbjct: 165 QIEVSVKTFWG-NIYTKMPKPEIGSVGATFAESEVRHHDAYSHLLEILGLNDE--FSKLE 221 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 E P I + ++Y ++ + N L F Sbjct: 222 ENPDIMTR----VRYLESA----LKHANSEDNKEYSESILLF 255 >gi|194433043|ref|ZP_03065326.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|194418770|gb|EDX34856.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|320180201|gb|EFW55137.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii ATCC 9905] gi|332088601|gb|EGI93714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 155-74] Length = 319 Score = 68.3 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKITDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] Length = 324 Score = 67.9 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W S LT++ER + R +++ ++ Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAIS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + L AF EAVH+ ++ I ++L ++ + F E + KA Sbjct: 83 LMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARL 142 Query: 162 ALQYTQT 168 L++ + Sbjct: 143 ILEHYEA 149 >gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella quintana str. Toulouse] gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str. Toulouse] Length = 324 Score = 67.9 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 8/146 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W S LT++ER + R +++ ++ Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTVRVFTGLTLLDTIQNTVGAIS 82 Query: 104 IY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 + ++ E AF EAVH+ ++ I ++L ++ + F E + KA Sbjct: 83 LMADAITEHEEAVLTNI-AFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKAR 141 Query: 161 WALQYTQTLSSPSFHYWNKRRRSRIL 186 L+ + S P L Sbjct: 142 LVLERYEA-SDPLKKKIASTLLESFL 166 >gi|3183695|emb|CAA07027.1| ribonucleotide reductase small subunit [Felid herpesvirus 1] Length = 331 Score = 67.9 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 8/141 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DD+ L++ E + F ++++ LV N Sbjct: 38 PDINMLRSLSIANRWLETDLPIGDDIKD---ITTLSESELDFYRFLFTFLSAADDLVNLN 94 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155 + + + + Y + Q E VHS + I L + E Y P + Sbjct: 95 LG-NLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPEL 153 Query: 156 TAKANWALQYTQTLSSPSFHY 176 K W S + Y Sbjct: 154 ARKVEWLRTRIGECESIAEKY 174 >gi|110642801|ref|YP_670531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 536] gi|191171432|ref|ZP_03032981.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|300990601|ref|ZP_07179251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|110344393|gb|ABG70630.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli 536] gi|190908366|gb|EDV67956.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|300305718|gb|EFJ60238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|324014406|gb|EGB83625.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 60-1] Length = 319 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 6/156 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 E + KA Q+ + P L Sbjct: 127 ENAPLQRKAQIIQQHYRG-DDPLKKKITSVFLESFL 161 >gi|50313261|ref|YP_053065.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 1] gi|132625|sp|P28847|RIR2_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|42795147|gb|AAS45904.1| small subunit of ribonucleotide reductase [Equid herpesvirus 1] gi|49617004|gb|AAT67277.1| ribonucleotide reductase RR2 [Equid herpesvirus 1] Length = 321 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DDL LT ER + F ++++ LV N Sbjct: 28 PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI-ITSLGLD---EGELFNMYREVPSI 155 + + + + Y + Q E HS + I + G D +I Sbjct: 85 LGD-LSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAI 143 Query: 156 TAKANW 161 K W Sbjct: 144 GRKVAW 149 >gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 316 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL WK L+D E+ ++K+ +G A ++L + + AI Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEGLYAIK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL 163 ++ + F E++H+ T+ I+ SL D +++ P + KA Sbjct: 77 KNARTQKELAVFSDFNFMESIHAKTYGTILISLNTFKDIEAIYDWMDNDPRMQFKAQRVN 136 Query: 164 QYTQT 168 Y Q Sbjct: 137 DYYQN 141 >gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 138 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L E+F Sbjct: 63 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKAN 160 + K Sbjct: 123 WTNNNEYLQKKDQ 135 >gi|319440834|ref|ZP_07989990.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 316 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P ++P+ +D+ W++ L++ E+ R Sbjct: 7 DWNRIEDDKDLEVWNRLTSNFWLPEKIPLSNDVQSWRT---LSEVEQATTMRVFAGLTYL 63 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ + + R P F E+VH+ ++ I +L + F Sbjct: 64 DTIQSAIGAPVLARDAVTPHEEAVFANIHFMESVHARSYSSIFQTLATTPQINDAFRWVE 123 Query: 151 EVPSITAKANWALQYTQ 167 E P++ K + + + + Sbjct: 124 EDPNMIYKRDRVISFYE 140 >gi|170684037|ref|YP_001744827.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SMS-3-5] gi|170521755|gb|ACB19933.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli SMS-3-5] Length = 319 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|261868068|ref|YP_003255990.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|293389919|ref|ZP_06634253.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413400|gb|ACX82771.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950453|gb|EFE00572.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 329 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 14/164 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 + ++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + Sbjct: 11 TPRFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRT--HISDVERAVITKTMLA 68 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 + E V +Y + PE E H + +++ LGL E+F Sbjct: 69 ISQIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGL--NEMFRN 125 Query: 149 YREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 R+ +I A+ + + + + + + F Sbjct: 126 VRQYKAIMARIEYMEAFMRKKD---------VSQQDFVLSLVMF 160 >gi|149408186|ref|YP_001294620.1| hypothetical protein ORF027 [Pseudomonas phage PA11] Length = 322 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 4/128 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 Y A + + W E+ ++ D+ + +T+ E + L F E + Sbjct: 13 FDYPEAIQFAKVQSSIFWTDDEINVEKDIQD--IRVNMTEAEAHGVITTLRLFTLYELVA 70 Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + L + + P+ + F E VH+ + I +L L+ E + Y P Sbjct: 71 GRDYWLGRVLKTFPRPDIERMAATFGFFELNVHAPFYNKINEALMLNTDEFYLAYVNDPI 130 Query: 155 ITAKANWA 162 + + + Sbjct: 131 LKERMEFV 138 >gi|260869355|ref|YP_003235757.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O111:H- str. 11128] gi|257765711|dbj|BAI37206.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O111:H- str. 11128] gi|323180097|gb|EFZ65649.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1180] Length = 319 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|191167101|ref|ZP_03028922.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|260856787|ref|YP_003230678.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O26:H11 str. 11368] gi|309795135|ref|ZP_07689554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|331664233|ref|ZP_08365139.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] gi|190902883|gb|EDV62611.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|257755436|dbj|BAI26938.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O26:H11 str. 11368] gi|308121106|gb|EFO58368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|323154887|gb|EFZ41079.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli EPECa14] gi|331058164|gb|EGI30145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] Length = 319 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|306812443|ref|ZP_07446641.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|222034376|emb|CAP77117.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli LF82] gi|305854481|gb|EFM54919.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|312947211|gb|ADR28038.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O83:H1 str. NRG 857C] Length = 319 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|218706176|ref|YP_002413695.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UMN026] gi|293406173|ref|ZP_06650099.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412] gi|298381910|ref|ZP_06991507.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli FVEC1302] gi|300898656|ref|ZP_07116977.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|301019059|ref|ZP_07183270.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331674197|ref|ZP_08374957.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA280] gi|218433273|emb|CAR14173.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli UMN026] gi|291426179|gb|EFE99211.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412] gi|298277050|gb|EFI18566.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli FVEC1302] gi|300357684|gb|EFJ73554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|300399412|gb|EFJ82950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331068291|gb|EGI39686.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA280] Length = 319 Score = 67.9 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|331648397|ref|ZP_08349485.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331042144|gb|EGI14286.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] Length = 319 Score = 67.9 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|281179683|dbj|BAI56013.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli SE15] Length = 319 Score = 67.9 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|323188442|gb|EFZ73728.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli RN587/1] Length = 319 Score = 67.9 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] Length = 320 Score = 67.9 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 10 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKAN 160 + + KA Sbjct: 124 WTNKNEFLQKKAK 136 >gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae 2603V/R] gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae NEM316] gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae A909] gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae 2603V/R] gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316] gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae A909] gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 319 Score = 67.9 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKA 159 + KA Sbjct: 123 WTNNNEFLQEKA 134 >gi|38234435|ref|NP_940202.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium diphtheriae NCTC 13129] gi|38200698|emb|CAE50394.1| ribonucleotide reductase beta-chain 1 [Corynebacterium diphtheriae] Length = 328 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ W N L D E+ R +++ ++ Sbjct: 30 EVWDRLTGNFWLPEKIPVSNDIKSW---NTLNDLEKQTTMRVFTGLTLLDTIQGTVGAVS 86 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + AF E+VH+ ++ I +L + F E ++ KA Sbjct: 87 MLPDAVSLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPEINDAFRWSEENENLQKKAKI 146 Query: 162 ALQYTQ 167 L Y + Sbjct: 147 ILSYYE 152 >gi|307625752|gb|ADN70056.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UM146] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella tribocorum CIP 105476] gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella tribocorum CIP 105476] Length = 324 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +D+ W S LT++ER + R +++ + Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWSS---LTEEERKLTIRVFTGLTLLDTIQNTVGAIS 82 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 + ++ E AF EAVH+ ++ I ++L ++ + F E + KA Sbjct: 83 LLADAITEHEEAVLTNI-AFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENSHLQKKAR 141 Query: 161 WALQYTQT 168 L+ + Sbjct: 142 LVLERYEA 149 >gi|330908707|gb|EGH37221.1| ribonucleotide reductase of class 1b (aerobic), beta subunit [Escherichia coli AA86] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|331684294|ref|ZP_08384886.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] gi|331077909|gb|EGI49115.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|218690804|ref|YP_002399016.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ED1a] gi|218428368|emb|CAR09297.2| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli ED1a] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|91212037|ref|YP_542023.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UTI89] gi|117624912|ref|YP_853853.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli APEC O1] gi|218559668|ref|YP_002392581.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli S88] gi|237706702|ref|ZP_04537183.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|91073611|gb|ABE08492.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli UTI89] gi|115514036|gb|ABJ02111.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli APEC O1] gi|218366437|emb|CAR04189.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli S88] gi|226899742|gb|EEH86001.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|294492274|gb|ADE91030.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli IHE3034] gi|315284934|gb|EFU44379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 110-3] gi|323951102|gb|EGB46978.1| ribonucleotide reductase [Escherichia coli H252] gi|323957111|gb|EGB52836.1| ribonucleotide reductase [Escherichia coli H263] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|167856024|ref|ZP_02478769.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis 29755] gi|219871494|ref|YP_002475869.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus parasuis SH0165] gi|167852863|gb|EDS24132.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis 29755] gi|219691698|gb|ACL32921.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parasuis SH0165] Length = 325 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 Q+ P +Y E + +++W+ TE D+ +++ + D ER ++ R + A Sbjct: 9 RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--NINDHERHVLTRAM--LA 64 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +Y + PE A E H + +++ LGL++ +F Sbjct: 65 ISQVEVNVKRFWGELYHYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLND--MFTQI 122 Query: 150 REVPSITAKANWALQYTQ 167 E+ + + + + + Sbjct: 123 TEIEPLMKRIRYMEDFMR 140 >gi|323978713|gb|EGB73795.1| ribonucleotide reductase [Escherichia coli TW10509] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|331654159|ref|ZP_08355159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] gi|331047541|gb|EGI19618.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|307547024|ref|YP_003899503.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] gi|307219048|emb|CBV44318.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] Length = 324 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 R D L+ E + +N W+P ++P+ +D+ W N L D E+ + R Sbjct: 10 RVDAINWNRLQDDKDLEVWNRLTSNFWLPEKIPLSNDVPSW---NTLNDREQQLTIRVFT 66 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145 +++ A+ P +F E+VH+ ++ I ++L D + Sbjct: 67 GLTLLDTIQGTIGAPALIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDA 126 Query: 146 FNMYREVPSITAKANWALQYTQT 168 + E + KA L+ +T Sbjct: 127 YRWSEENTHLQNKAELILERYRT 149 >gi|257865182|ref|ZP_05644835.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257871507|ref|ZP_05651160.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257874804|ref|ZP_05654457.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|325571550|ref|ZP_08147050.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus casseliflavus ATCC 12755] gi|257799116|gb|EEV28168.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257805671|gb|EEV34493.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257808970|gb|EEV37790.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|325156026|gb|EGC68222.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus casseliflavus ATCC 12755] Length = 321 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W++ L+ E+ + G Sbjct: 10 NWNEIEDIIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRT---LSPLEKTTVGYVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + + + + + P L F E+VH+ ++ I ++L ++F Sbjct: 64 TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIADIFE 123 Query: 148 MYREVPSITAKAN 160 P + KA Sbjct: 124 WTNTNPYLQKKAE 136 >gi|215487997|ref|YP_002330428.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|215266069|emb|CAS10489.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli O127:H6 str. E2348/69] Length = 319 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|323966928|gb|EGB62356.1| ribonucleotide reductase [Escherichia coli M863] gi|327251394|gb|EGE63080.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli STEC_7v] Length = 319 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|82492124|gb|ABB77921.1| ribonucleotide reductase beta chain [Environmental halophage 1 AAJ-2005] Length = 358 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 9/162 (5%) Query: 19 VDDKRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + K +++SD+ L P +Y + + N++W+ E D+ ++ Sbjct: 25 PERKDDTDSQSDIFTARQHLKPYEYTDFLDYVDAVRNSYWVHDEFNFDGDIQDYRVNT-- 82 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T E+ IKR + A E V IY + E + A E H + ++ Sbjct: 83 TPAEQTTIKRTMLAIAQIEVQVKTFWSD-IYEDMPKAEVGNVGMTFAESEVRHMDAYSHL 141 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHY 176 + LG+++ F EVP++ + + +Y + SS + Sbjct: 142 LDVLGIEDE--FEQITEVPAVQQRIEYLDEYLEMGSSENKQE 181 >gi|83814991|ref|YP_444284.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter ruber DSM 13855] gi|83756385|gb|ABC44498.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter ruber DSM 13855] Length = 324 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + Sbjct: 6 ERVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAI 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 A E V IY L PE + A E H + +++ LGL++ F Sbjct: 64 AQVEVAVKTFWAD-IYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERI 120 Query: 150 REVPSITAKANW 161 E+P++ + + Sbjct: 121 EEIPALIDRVEY 132 >gi|294505968|ref|YP_003570026.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter ruber M8] gi|294342296|emb|CBH23074.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter ruber M8] Length = 324 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + Sbjct: 6 ERVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAI 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 A E V IY L PE + A E H + +++ LGL++ F Sbjct: 64 AQVEVAVKTFWAD-IYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERI 120 Query: 150 REVPSITAKANW 161 E+P++ + + Sbjct: 121 EEIPALIDRVEY 132 >gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella henselae str. Houston-1] gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str. Houston-1] Length = 324 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W S LT++ER + R +++ ++ Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTIQNTVGAIS 82 Query: 104 IY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 + ++ E AF EAVH+ ++ I ++L ++ + F E + KA Sbjct: 83 LMADAITEHEEAVLTNI-AFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKAR 141 Query: 161 WALQYTQ 167 L+ + Sbjct: 142 LVLERYE 148 >gi|311278369|ref|YP_003940600.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] gi|308747564|gb|ADO47316.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] Length = 320 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P ++P+ +D+ W+S L+ E+ + R Sbjct: 11 NWNRIEDEKDLEVWNRLTSNFWLPEKIPLSNDIPAWQS---LSHAEQQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ ++ P L F EAVH+ ++ I ++L D + Sbjct: 68 DTVQNTVGAPSLMPDALTPHEEAVLSNIGFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 127 Query: 151 EVPSITAKA 159 E + KA Sbjct: 128 ENAPLQQKA 136 >gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10270] gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10270] Length = 320 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 10 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 64 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 123 Query: 148 MYREVPSITAKA 159 + KA Sbjct: 124 WTNNNEFLQEKA 135 >gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes M1 GAS] gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS315] gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes SSI-1] gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS5005] gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS9429] gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS2096] gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes M1 GAS] gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit [Streptococcus pyogenes MGAS315] gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit [Streptococcus pyogenes SSI-1] gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS5005] gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS9429] gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS2096] gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 319 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKA 159 + KA Sbjct: 123 WTNNNEFLQEKA 134 >gi|312965591|ref|ZP_07779821.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 2362-75] gi|312289740|gb|EFR17630.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 2362-75] Length = 319 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|251792578|ref|YP_003007304.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247533971|gb|ACS97217.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 329 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 14/162 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 ++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + + Sbjct: 13 RFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRT--HISDVERAVITKTMLAIS 70 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y + PE E H + +++ LGL E+F R Sbjct: 71 QIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGL--NEMFLNVR 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + +I A+ + + + + + + F Sbjct: 128 QYKAIMARIEYMEAFMRRKD---------VSQQDFVLSLIMF 160 >gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS8232] gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10394] gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS6180] gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10750] gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes str. Manfredo] gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes MGAS8232] gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10394] gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS6180] gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10750] gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes str. Manfredo] Length = 319 Score = 67.6 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKA 159 + KA Sbjct: 123 WTNNNEFLQEKA 134 >gi|218701171|ref|YP_002408800.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI39] gi|218371157|emb|CAR18988.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli IAI39] Length = 319 Score = 67.6 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLTNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237] gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237] Length = 424 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 13/177 (7%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R KR N L P +Y +E + +++W+ +E D+ +K++ LT Sbjct: 92 RNEQSQKRKSNIFEKRINLKPYEYPELYEYVPAIRHSYWIHSEFNFTSDIQDFKTR--LT 149 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D E+ IK + + E V IY + PE A E H+ + +++ Sbjct: 150 DTEQSAIKNTMLAISQIEVAVKGFWGD-IYHKMPKPEIGSVGATFAESEVRHADAYSHLL 208 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 LGL+ F ++ P+I + + + L F Sbjct: 209 EILGLNNE--FKNLKKKPAIMKRVQYL--------ETALKNAKSEDNKDYAESILLF 255 >gi|309786253|ref|ZP_07680881.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 1617] gi|308925998|gb|EFP71477.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 1617] Length = 301 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + +N W+P +VP+ +D+ W++ LT E+ + R ++L ++ Sbjct: 1 MWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQNVIGAPSL 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 P L +F E VH+ ++ I ++L D + E + KA Sbjct: 58 MPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYAWSEENALLQRKAQII 117 Query: 163 LQYTQ 167 Q+ + Sbjct: 118 QQHYR 122 >gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] Length = 330 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W + L D E+ R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDLKSW---STLNDLEKQTTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + L AF E+VH+ ++ I +L + E F E ++ KA Sbjct: 89 MLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKI 148 Query: 162 ALQYTQ 167 L Y Sbjct: 149 ILTYYD 154 >gi|300780546|ref|ZP_07090401.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium genitalium ATCC 33030] gi|300533532|gb|EFK54592.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium genitalium ATCC 33030] Length = 333 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ W N L D E+L R +++ ++ Sbjct: 35 EVWDRLTGNFWLPEKIPVSNDIPSW---NTLNDAEQLSTMRVFANLTLLDTIQGTVGAVS 91 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + AF E+VH+ ++ I +L + F E + KA Sbjct: 92 LIPDAKTLHEEAVYTNIAFMESVHAKSYSNIYMTLASTPQINDAFRWTEENAEVQRKAKI 151 Query: 162 ALQYT 166 Y Sbjct: 152 IQSYY 156 >gi|251788642|ref|YP_003003363.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591] gi|247537263|gb|ACT05884.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591] Length = 320 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++ + +D+ W LTD ER + R ++L A Sbjct: 22 EVWNRLTANFWLPEKIALSNDMPSWAQ---LTDAERQLTLRVFTGLTLLDTLQNTQGAPA 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + P L F EAVH+ ++ I ++L L E+ Y Sbjct: 79 LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCL-TNEVDCAYH 124 >gi|46519447|gb|AAT00095.1| JM118 [Macaca fuscata rhadinovirus] Length = 314 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 D L + N W P+++ + +D L+ +R + Sbjct: 12 ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS-LGLDEGEL 145 F +ESLV NI + + SN + Y Q E +H + I+ G + G+L Sbjct: 68 TFLGMAESLVNFNI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126 Query: 146 F---NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E ++ K +W + + ++ ++ + F+ Sbjct: 127 MTYAKKIVEDATLAKKIDWLHSRVRKAT-----TRAEKVLLFLVIEGIYFI 172 >gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] Length = 324 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +D+ W S LTD+ER + R +++ + Sbjct: 26 EVWNRLTGNFWLPEKVPLSNDIPSWSS---LTDEERKLTIRVFTGLTLLDTIQNTVGAIS 82 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 + ++ E AF EAVH+ ++ I ++L ++ + F E + KA Sbjct: 83 LLADAITEHEEAVLTNI-AFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKAR 141 Query: 161 WALQYTQT 168 L+ + Sbjct: 142 LVLERYEA 149 >gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 318 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 9/158 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +DL W + +E+ R + ++L ++ Sbjct: 20 EIWDRLTGNFWLPEKIPVSNDLPKW---GLMNAEEQWATMRVFAGLTALDTLQGAVGAIS 76 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L AF EAVH+ ++ I +L F E ++ K+ Sbjct: 77 LMPDAVTPHEEAVLCNIAFMEAVHAKSYSNIFMTLSSTPEINRAFRWAEESETLRYKSTR 136 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRILTRS----LRFLCR 195 ++ + +S + S + LRF R Sbjct: 137 VREFYEGDNSLMRKAASTLLESFLFYSGFYLPLRFASR 174 >gi|82778048|ref|YP_404397.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae Sd197] gi|81242196|gb|ABB62906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella dysenteriae Sd197] Length = 322 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F E VH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENALLQRKAQIIQQHYR 143 >gi|228473186|ref|ZP_04057941.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275336|gb|EEK14128.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga gingivalis ATCC 33624] Length = 319 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 5/135 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + W+ +EV D+ +KS L+ E+ +KR L A Sbjct: 7 RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLVEKEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVAVKTFWGD-LYDVFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FEALL 121 Query: 151 EVPSITAKANWALQY 165 EVP + +Y Sbjct: 122 EVPIFKERNTILKEY 136 >gi|305681191|ref|ZP_07403998.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium matruchotii ATCC 14266] gi|305659396|gb|EFM48896.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium matruchotii ATCC 14266] Length = 330 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W + N L E+ R +++ ++ Sbjct: 32 EVWDRLTGNFWLPEKVPVSNDLKSWSTLNEL---EKQTTMRVFTGLTLLDTIQGTVGAVS 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + L AF E+VH+ ++ I +L + E F E ++ KA Sbjct: 89 MLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKI 148 Query: 162 ALQYTQ 167 L Y Sbjct: 149 ILTYYD 154 >gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium efficiens YS-314] gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens YS-314] gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] Length = 339 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 5/145 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + N W+P ++P+ +D+ W N +++ E L R +++ ++ Sbjct: 40 DIWNRLTTNFWLPEKIPVSNDIQKW---NSMSEAEHLATLRVFTGLTLLDTIQGTVGAVS 96 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + L +F E+VH+ ++ I +L E F R + KA Sbjct: 97 MIPDATTHHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKR 156 Query: 162 ALQYTQTLSSPSFHYWNKRRRSRIL 186 L Y Q S+P+ +L Sbjct: 157 ILDYYQQDSTPARKKIASVMLESLL 181 >gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 318 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 5/138 (3%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + ++ V ++ + A + W+ T VP+ +DLA W+ L+ E+ +IK+ Sbjct: 1 MTSKHQVINWNKIEDELDDYVWDKATSQFWLDTRVPISNDLADWRE---LSSVEQEVIKK 57 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDE 142 +G A ++L + V A+ + + L F E++H+ ++ I+TSL Sbjct: 58 VVGGLALLDTLQSEKGVNAMREDVRTHKEAAILNNFLFMESIHAKSYGTILTSLNSIKSI 117 Query: 143 GELFNMYREVPSITAKAN 160 E+++ + KA Sbjct: 118 NEIYDWMNNDERMQYKAK 135 >gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W LT E+ + R +++ ++ Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIPSW---GTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVS 82 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P L AF E+VH+ ++ I ++L E+ + + E ++ KA Sbjct: 83 LIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCS-TAEIDDAFRWSEENRNLQRKAE 141 Query: 161 WALQ 164 LQ Sbjct: 142 IVLQ 145 >gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] Length = 319 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + AI + P L F E+VH+ ++ I ++L E+F Sbjct: 63 TLLDTMQSETGIEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKA 159 + KA Sbjct: 123 WTNNNEFLQEKA 134 >gi|256820037|ref|YP_003141316.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271] gi|315225453|ref|ZP_07867266.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] gi|256581620|gb|ACU92755.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271] gi|314944551|gb|EFS96587.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] Length = 319 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y E + + W+ +EV D+ +KS LT E+ +KR L A Sbjct: 7 RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--ELTPVEKEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVSVKTFWGD-LYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121 Query: 151 EVPSITAKANWALQY 165 EVP ++N +Y Sbjct: 122 EVPVFKERSNVLKEY 136 >gi|222102712|ref|YP_002539751.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium vitis S4] gi|221739313|gb|ACM40046.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium vitis S4] Length = 329 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W L +E+ + R +++ + Sbjct: 31 EVWNRLTGNFWLPEKVPLSNDIPSWA---ALKPEEQQLTIRVFTGLTLLDTIQTSIGAPT 87 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANW 161 + P +F EAVH+ ++ I ++L D + + E + K+ Sbjct: 88 LMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYRWSEENEFLQKKSAL 147 Query: 162 ALQYTQT 168 L++ + Sbjct: 148 ILEHYRN 154 >gi|319891738|ref|YP_004148613.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161434|gb|ADV04977.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|323465093|gb|ADX77246.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus pseudintermedius ED99] Length = 320 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + W+ TE + D+A WKS LT+ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNIAQMWVETEFKVSKDIASWKS---LTEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDE 142 L ++ A++ + I H + + E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSKET 112 Query: 143 GELFNMY-REVPSITAKAN 160 EL +++ E P + K+ Sbjct: 113 DELLDVWVLEEPHLKYKSE 131 >gi|320194816|gb|EFW69445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli WV_060327] Length = 319 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 6/156 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 E + KA Q+ + P L Sbjct: 127 ENAPLQRKAQIIQQHYRG-DDPLKKKITSVFLESFL 161 >gi|293412034|ref|ZP_06654757.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|291468805|gb|EFF11296.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] Length = 319 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|312864696|ref|ZP_07724927.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099823|gb|EFQ58036.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 319 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 10/134 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSEAEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +++ + V AI + + E Q F E+VH+ ++ I ++L E+F Sbjct: 63 TLLDTMQSQTGVEAIRGDIRTQHEEAVLNNIQ-FMESVHAKSYSSIFSTLNTKSEIEEIF 121 Query: 147 NMYREVPSITAKAN 160 + + KA Sbjct: 122 DWTNNNEYLQKKAE 135 >gi|331658787|ref|ZP_08359729.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] gi|315298701|gb|EFU57955.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 16-3] gi|331053369|gb|EGI25398.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] Length = 319 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLLPDTLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|115754707|ref|XP_001199509.1| PREDICTED: similar to putative ribonucleotide reductase small subunit, partial [Strongylocentrotus purpuratus] Length = 44 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 16/41 (39%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 V + + E R + Q E +HS + +I + D Sbjct: 1 VERFSQEVQVAEARCFYGFQIAIENIHSEMYSLLIDTYIKD 41 >gi|38638230|ref|NP_944413.1| ribonucleotide reductase subunit 2 [Psittacid herpesvirus 1] gi|81987371|sp|Q6UDJ1|RIR2_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|34500236|gb|AAQ73719.1| unknown [Psittacid herpesvirus 1] Length = 313 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 12/131 (9%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + N+W E+ D + LT+DE K F A+++ LV N Sbjct: 18 PDMRELRDLSIANNWNEFELCYARDEKD---VDCLTEDECDFYKFVFCFLAAADDLVNVN 74 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI------ITSLGLDEGELFNMYREVP 153 + + + + Y Q E VHS T+ + ++ D + ++ Sbjct: 75 L-DNLVTLFPQKDIQHYYAEQIRIETVHSRTYSAVQLVFFRNDAIARDRY-VLEAVKD-G 131 Query: 154 SITAKANWALQ 164 +I K +W + Sbjct: 132 AIRRKIDWLSR 142 >gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus sakei subsp. sakei 23K] gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus sakei subsp. sakei 23K] Length = 318 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+S L D+E+ ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 ++ ++ P L F E+VH+ ++ I ++L E+F+ + KAN Sbjct: 76 SLKANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTPNEIDEIFDWTNTNEYLQYKAN 135 >gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] Length = 320 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 10 NWNEIEDIIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 124 WTNSNDYLQKKAK 136 >gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 320 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 10 NWNEIEDIIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 124 WTNSNDYLQKKAK 136 >gi|284922618|emb|CBG35706.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli 042] Length = 319 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQKLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|324005772|gb|EGB74991.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 57-2] Length = 319 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|70607897|ref|YP_256767.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68568545|gb|AAY81474.1| ribonucleoside-diphosphate reductase [Sulfolobus acidocaldarius DSM 639] Length = 314 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 19/136 (13%) Query: 39 YGWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 Y W + Y W P ++ D WK L+ DE+ + + F + E Sbjct: 25 YDWNTFPMKLYQIGKRLFWDPAKIDFSKDKEDWKK---LSKDEKNYLLNIVSLFMAGEEA 81 Query: 96 VANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFN----- 147 VA +I I ++ E YL + AFEEA H+ F+ SL D+ +F Sbjct: 82 VAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIFTTEYNP 141 Query: 148 -----MYREVPSITAK 158 Y E+PS+ K Sbjct: 142 WYQKIFYEELPSVMWK 157 >gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] Length = 319 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 5/149 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M +R ++ E + +N W+P +VP+ +D+ W++ L+ E+ + Sbjct: 1 MTLSRVSAINWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTI 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141 R +++ A+ P L +F EAVH+ ++ I ++L D Sbjct: 58 RVFTGLTLLDTIQNIVGAPALMADSITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTTD 117 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLS 170 + E + KA L + + + Sbjct: 118 VDAAYAWSEENNPLQRKAQIILAHYASDN 146 >gi|60416882|emb|CAD71202.1| ribonucleoside-diphosphate reductase small subunit [Bacillus subtilis] Length = 140 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + I Sbjct: 26 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPII 82 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158 H+ + + L A E VH+ ++ I +L E E+F + + K Sbjct: 83 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKK 139 >gi|300941043|ref|ZP_07155562.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] gi|300454207|gb|EFK17700.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] Length = 319 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|10834911|ref|NP_066872.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 3] gi|5102912|dbj|BAA78729.1| UL40 protein [Marek's disease virus serotype 2 MDV2] gi|5689312|dbj|BAA82936.1| UL40 product homolog [Marek's disease virus serotype 2 MDV2] gi|10800005|dbj|BAB16550.1| UL40 protein [Gallid herpesvirus 3] Length = 353 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 13/159 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + +DL L+++E+ + F ++++ LV N Sbjct: 61 PDIGHLRALSIMNRWTETEFVVAEDLGD---VAKLSEEEKNFYRFLFTFLSAADDLVNLN 117 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155 I + + Y Q EAVHS + + + + E P I Sbjct: 118 I-DNLLGLFEQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSSARAKYVQSALESPVI 176 Query: 156 TAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 +K W + +S Y ILT + F Sbjct: 177 QSKLEWLDRRILECTSIPEKY-----ILMILTEGIFFSA 210 >gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] Length = 364 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +R + + + N W+P +VP+ +D+ W+S LTD ER R Sbjct: 48 GSRVRPVNWNNIVDDKDLDVWNRLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRV 104 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 ++ A L H + AF +++H+ ++ I ++L E E+ Sbjct: 105 FTGLTLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EI 163 Query: 146 FNMYR 150 YR Sbjct: 164 DEAYR 168 >gi|18653874|ref|NP_570808.1| small ribonucleotide reductase [Macacine herpesvirus 5] gi|4494972|gb|AAD21394.1| small ribonucleotide reductase [Macaca mulatta rhadinovirus 17577] Length = 314 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 D L + N W P+++ + +D L+ +R + Sbjct: 12 ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS-LGLDEGEL 145 F +ESLV NI + + SN + Y Q E +H + I+ G + G+L Sbjct: 68 TFLGMAESLVNFNI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126 Query: 146 F---NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E ++ K +W + + ++ ++ + F+ Sbjct: 127 MIYAKKIVEDATLAKKIDWLHSRVRKAT-----TRAEKVLLFLVIEGIYFI 172 >gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] Length = 359 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +R + + + N W+P +VP+ +D+ W+S LTD ER R Sbjct: 43 GSRVRPVNWNNIVDDKDLDVWNRLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRV 99 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 ++ A L H + AF +++H+ ++ I ++L E E+ Sbjct: 100 FTGLTLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EI 158 Query: 146 FNMYR 150 YR Sbjct: 159 DEAYR 163 >gi|297622357|ref|YP_003703791.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093] gi|297163537|gb|ADI13248.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093] Length = 324 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 + L P +Y + +++W+ TE + +D+ ++ G+ + ER ++ R L Sbjct: 4 ERRSTLRPAEYPEFLAYRDAIRHSYWLHTEYNLTEDVNDYR--VGVREAERQVLTRALLA 61 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E V +YR PE A E H + +++ LGL + F Sbjct: 62 IAQVEVAVKTFWGD-LYRKFPKPEVGAVGYTFAESEVRHQDAYAHLLELLGL--TDAFAR 118 Query: 149 YREVPSITAK 158 E P++ + Sbjct: 119 LHEAPALGER 128 >gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis ATCC 14018] gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] Length = 364 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +R + + + N W+P +VP+ +D+ W+S LTD ER R Sbjct: 48 GSRVRPVNWNNIVDDKDLDVWNRLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRV 104 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 ++ A L H + AF +++H+ ++ I ++L E E+ Sbjct: 105 FTGLTLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EI 163 Query: 146 FNMYR 150 YR Sbjct: 164 DEAYR 168 >gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05ZYH33] gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 98HAH33] gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|253751944|ref|YP_003025085.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33] gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33] gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus suis GZ1] gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis JS14] gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] Length = 319 Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGVQ 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L ++F + KA Sbjct: 76 ALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAK 135 Query: 161 WALQYTQT 168 + +T Sbjct: 136 IINEIYET 143 >gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05HAS68] Length = 320 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V Sbjct: 23 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGVQ 76 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + P F E+VH+ ++ I ++L ++F + KA Sbjct: 77 ALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAK 136 Query: 161 WALQYTQT 168 + +T Sbjct: 137 IINEIYET 144 >gi|145296522|ref|YP_001139343.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum R] gi|140846442|dbj|BAF55441.1| hypothetical protein [Corynebacterium glutamicum R] Length = 334 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W L D E+ R +++ ++ Sbjct: 36 EVWDRLTGNFWLPEKVPVSNDIKSW---GTLNDVEKAATMRVFTGLTLLDTIQGTVGAIS 92 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + + L AF E+VH+ ++ I +L E+ + + E ++ KA Sbjct: 93 LLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLAS-TAEINDAFRWSEENENLQRKAK 151 Query: 161 WALQYTQ 167 L Y + Sbjct: 152 IILSYYE 158 >gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] Length = 331 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +R + + + N W+P +VP+ +D+ W+S LTD ER R Sbjct: 15 GSRVRPVNWNNIVDDKDLDVWNRLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRV 71 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 ++ A L H + AF +++H+ ++ I ++L E E+ Sbjct: 72 FTGLTLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EI 130 Query: 146 FNMYR 150 YR Sbjct: 131 DEAYR 135 >gi|7330057|gb|AAF60046.1|AF210726_67 small ribonuclease reductase [Rhesus monkey rhadinovirus H26-95] Length = 304 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 D L + N W P+++ + +D L+ +R + Sbjct: 2 ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 57 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS-LGLDEGEL 145 F +ESLV NI + + SN + Y Q E +H + I+ G + G+L Sbjct: 58 TFLGMAESLVNFNI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 116 Query: 146 F---NMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 E ++ K +W + + ++ ++ + F+ Sbjct: 117 MIYAKKIVEDATLAKKIDWLHSRVRKAT-----TRAEKVLLFLVIEGIYFI 162 >gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 316 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + + A+ Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKA 159 ++ + R L F E++H+ T+ I+ SL D E++N + KA Sbjct: 77 KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYNWMNNDRRMQFKA 132 >gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont] Length = 319 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + NN W+P +VP+ +DL W+S L ++ + R Sbjct: 10 NWNRIQDEKDLEVWNRLTNNFWLPEKVPLSNDLPAWQS---LAPQQQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNVIGAPGLMEDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCNTADVDAAYLWSE 126 Query: 151 EVPSITAKANWALQYTQT 168 E ++ KA L++ + Sbjct: 127 ENAALQNKAKIVLEHYRA 144 >gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 318 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL+ W++ L D + ++ G ++L + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMA 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ + + P L F E+VH+ ++ I ++L E E+F+ + KA Sbjct: 76 SLRKDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFDWSDTEEFLQNKA 134 >gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] Length = 317 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 8/152 (5%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + Sbjct: 21 WEKLTEQ---FWLDTRIPISNDLSDWRE---LDEDHQWVVGHVFGGLTLLDTLQSQDGMA 74 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + + P L F E+VH+ ++ I +L E+F + K Sbjct: 75 ALRKDVRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPTEIDEIFEWSDSEEFLQNKTK 134 Query: 161 WALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + P + L S F Sbjct: 135 FIYDLYHDDGHPLKKKISSVFLETFLFYSGFF 166 >gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 331 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ + D W+ GL + R I R FF + E V +I Sbjct: 35 KLFAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEEAVTEDI-QP 90 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R + E R YL + AFEEA H F+ + +LG+ E Sbjct: 91 FLRAM-AAEGRLGDEMYLTQFAFEEARHVQAFRLWLDALGVHED 133 >gi|227876139|ref|ZP_03994257.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] gi|227843295|gb|EEJ53486.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] Length = 333 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +AR + E + +N W+P +VP+ +DL W N L+D ER + Sbjct: 14 RHNHSARLRPINWNNITDEKDREIWNRLTSNFWLPEKVPLSNDLPSW---NQLSDMERNV 70 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 R +++ A + I ++ E + AF +AVH+ ++ I ++L Sbjct: 71 TMRVFTGLTMLDTVQATVGEISQIQDGITEHE-QAIYANIAFMQAVHARSYSSIFSTL-S 128 Query: 141 DEGELFNMY 149 + E+ Y Sbjct: 129 NTPEIDAAY 137 >gi|310764903|gb|ADP09853.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia sp. Ejp617] Length = 319 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L +++ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLNAEQQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQ 164 + + KA LQ Sbjct: 127 DNAPLQGKAQIILQ 140 >gi|323512793|gb|ADX88247.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_D] gi|323513021|gb|ADX88474.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_C] gi|323513246|gb|ADX88698.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_B] gi|323513473|gb|ADX88924.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_A] gi|323513704|gb|ADX89154.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2005_A] Length = 450 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y ++ + + W E+ + D ++S + T D ++ + L + ++SL + Sbjct: 37 YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 +IV ++N + Q +LR + EA+HS T+ II + ++F +T + Sbjct: 94 SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153 >gi|325171172|ref|YP_004251147.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage ICP1] gi|323512567|gb|ADX88022.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage ICP1] gi|323513935|gb|ADX89384.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2001_A] gi|323514163|gb|ADX89611.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2004_A] Length = 450 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y ++ + + W E+ + D ++S + T D ++ + L + ++SL + Sbjct: 37 YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 +IV ++N + Q +LR + EA+HS T+ II + ++F +T + Sbjct: 94 SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153 >gi|5230837|gb|AAD41037.1|AF112536_1 ribonucleotide reductase beta-chain [Corynebacterium glutamicum] Length = 334 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W L + E+ R +++ ++ Sbjct: 36 EVWDRLTGNFWLPEKVPVSNDIKSW---GTLNEVEKAATMRVFTGLTLLDTIQGTVGAIS 92 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + + L AF E+VH+ ++ I +L E+ + + E ++ KA Sbjct: 93 LLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLAS-TAEINDAFRWSEENENLQRKAK 151 Query: 161 WALQYTQ 167 L Y + Sbjct: 152 IILSYYE 158 >gi|19553723|ref|NP_601725.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum ATCC 13032] gi|62391364|ref|YP_226766.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum ATCC 13032] gi|15430572|dbj|BAB64405.1| ribonucleoside diphosphate reductase [Corynebacterium glutamicum] gi|21325297|dbj|BAB99918.1| Ribonucleotide reductase beta subunit [Corynebacterium glutamicum ATCC 13032] gi|41326705|emb|CAF21187.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN [Corynebacterium glutamicum ATCC 13032] Length = 334 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +D+ W L + E+ R +++ ++ Sbjct: 36 EVWDRLTGNFWLPEKVPVSNDIKSW---GTLNEVEKAATMRVFTGLTLLDTIQGTVGAIS 92 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + + L AF E+VH+ ++ I +L E+ + + E ++ KA Sbjct: 93 LLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLAS-TAEINDAFRWSEENENLQRKAK 151 Query: 161 WALQYTQ 167 L Y + Sbjct: 152 IILSYYE 158 >gi|322515075|ref|ZP_08068083.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] gi|322118955|gb|EFX91132.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] Length = 326 Score = 65.6 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ ++ + D ER ++ R + A Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAM--LA 65 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +YR+ PE A E H + +++ LGL E+F+ Sbjct: 66 ISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQI 123 Query: 150 REVPSITAKANWALQYTQTLSS 171 +++ + + + + + + Sbjct: 124 QDIEPLMNRIRYMESFMKDKDA 145 >gi|307244959|ref|ZP_07527056.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854124|gb|EFM86332.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 325 Score = 65.6 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ ++ + D ER ++ R + A Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAM--LA 64 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +YR+ PE A E H + +++ LGL E+F+ Sbjct: 65 ISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQI 122 Query: 150 REVPSITAKANWALQYTQTLSS 171 +++ + + + + + + Sbjct: 123 QDIEPLMNRIRYMESFMKDKDA 144 >gi|269468252|gb|EEZ79942.1| ribonucleotide-diphosphate reductase subunit beta [uncultured SUP05 cluster bacterium] Length = 319 Score = 65.6 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 45/100 (45%) Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L +E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 2 DFAKLLPNEKHIFISNLQYQILLDSVQGRSPNIAFLPIVSLPELENWIETWSFSETIHSR 61 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ +II ++ + G +F+ + I +A ++ L Sbjct: 62 SYTHIIRAIVNEPGVVFDDIMKTDKIIQRAESVSKHYDEL 101 >gi|53728876|ref|ZP_00348266.1| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207635|ref|YP_001052860.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae L20] gi|165975603|ref|YP_001651196.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149418|ref|YP_001967943.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249851|ref|ZP_07336055.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251971|ref|ZP_07338142.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247133|ref|ZP_07529185.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249355|ref|ZP_07531349.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251676|ref|ZP_07533581.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253912|ref|ZP_07535764.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256172|ref|ZP_07537959.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258366|ref|ZP_07540107.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260605|ref|ZP_07542297.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262736|ref|ZP_07544363.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096427|gb|ABN73255.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875704|gb|ABY68752.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914549|gb|ACE60801.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649401|gb|EFL79586.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651418|gb|EFL81570.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856382|gb|EFM88533.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858649|gb|EFM90711.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860873|gb|EFM92881.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863116|gb|EFM95058.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865353|gb|EFM97249.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867550|gb|EFM99397.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869682|gb|EFN01467.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871881|gb|EFN03598.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 325 Score = 65.6 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ ++ + D ER ++ R + A Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAM--LA 64 Query: 91 SSESLVA-NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S+ V +YR+ PE A E H + +++ LGL E+F+ Sbjct: 65 ISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQI 122 Query: 150 REVPSITAKANWALQYTQTLSS 171 +++ + + + + + + Sbjct: 123 QDIEPLMNRIRYMESFMKDKDA 144 >gi|241888586|ref|ZP_04775893.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella haemolysans ATCC 10379] gi|241864609|gb|EER68984.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella haemolysans ATCC 10379] Length = 322 Score = 65.3 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 8/154 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANW 161 H + + E +H+ ++ I TSL + + + VPS + KA Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQYKAKL 133 Query: 162 ALQYTQTL---SSPSFHYWNKRRRSRILTRSLRF 192 Y L P++ + R S L + + Sbjct: 134 IEDYYMKLFKPEVPTYDLYMARVASVFLESYIFY 167 >gi|332087397|gb|EGI92525.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella boydii 5216-82] Length = 319 Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 5/137 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ ++ LT E+ + R Sbjct: 10 NWNKITDDKDLEVWNRLTSNFWLPEKVPLSNDIP---ARQTLTVVEQQLTMRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 127 ENAPLQRKAQIIQQHYR 143 >gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 338 Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 17/129 (13%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +DL W N LTD ER + + +++ A Sbjct: 36 EIWQRLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGLTLLDTVQAT----- 87 Query: 104 IYRHLSNPECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSI 155 + P+ R AF +AVH+ ++ + +++ E E+ Y P++ Sbjct: 88 VGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSE-EINAAYTWAIGNPAL 146 Query: 156 TAKANWALQ 164 +A +Q Sbjct: 147 QRRATAVMQ 155 >gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] Length = 333 Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +AR + E + +N W+P +VP+ +DL W N L+D ER + Sbjct: 14 RHNHSARLRPINWNNITDEKDREIWNRLTSNFWLPEKVPLSNDLPSW---NQLSDMERSV 70 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 R +++ A + I ++ E + AF +AVH+ ++ I ++L Sbjct: 71 TMRVFTGLTMLDTVQATVGEISQIQDGITEHE-QAIYANIAFMQAVHARSYSSIFSTL-S 128 Query: 141 DEGELFNMY 149 + E+ Y Sbjct: 129 NTPEIDAAY 137 >gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus haemolyticus JCSC1435] gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus haemolyticus JCSC1435] Length = 322 Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT+DE+ KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + K++ Sbjct: 113 NYLLDTWVIEEPHLKYKSD 131 >gi|213962351|ref|ZP_03390614.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sputigena Capno] gi|213955017|gb|EEB66336.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sputigena Capno] Length = 319 Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y E + + W+ +EV D+ +KS L+ E+ +KR L A Sbjct: 7 RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--NLSTVEQEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVSVKTFWGD-LYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121 Query: 151 EVPSITAKANWALQY 165 EVP + N +Y Sbjct: 122 EVPIFKERNNILKEY 136 >gi|306819415|ref|ZP_07453122.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307701705|ref|ZP_07638721.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] gi|304647707|gb|EFM45025.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307613208|gb|EFN92461.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] Length = 333 Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +AR + E + +N W+P +VP+ +DL W N L+D ER + Sbjct: 14 RHNHSARLRPINWNNITDEKDREIWNRLTSNFWLPEKVPLSNDLPSW---NQLSDMERSV 70 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 R +++ A + I ++ E + AF +AVH+ ++ I ++L Sbjct: 71 TMRVFTGLTMLDTVQATVGEISQIQDGITEHE-QAIYANIAFMQAVHARSYSSIFSTL-S 128 Query: 141 DEGELFNMY 149 + E+ Y Sbjct: 129 NTPEIDAAY 137 >gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Leeuwenhoekiella blandensis MED217] gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Leeuwenhoekiella blandensis MED217] Length = 427 Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 17/178 (9%) Query: 20 DDKRMLNARSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +KR L ++++ L P +Y E + +++W+ TE D+ +K+ GL+ Sbjct: 95 RNKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKT--GLS 152 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER IK + + E V +R L PE A E H + +++ Sbjct: 153 EVERSAIKNTMLAISQIEVAVKTFWGDVHHR-LPKPEIAAVGATFAESEVRHHDAYSHLL 211 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 LGL+E F ++ P I + ++ S + L F Sbjct: 212 EILGLNEE--FKELKKKPVIMKRVHYL--------ETSLKHAKSDDDREYTESILLFA 259 >gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 335 Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P ++P+ +DL W+ L+DDER + R +++ A Sbjct: 37 EVWQRLTSNFWLPEKMPLSNDLPDWR---ALSDDERTLTARVFTGLTLLDTVQAT----- 88 Query: 104 IYRHLSNPECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + P+ R AF +AVH+ ++ + +++ E+ + Y Sbjct: 89 VGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCS-SAEIEDAY 138 >gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mutans UA159] gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus mutans UA159] gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] Length = 319 Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAAEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L +F Sbjct: 63 TLLDTMQSQSGVEAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEGIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNEYLQKKAK 135 >gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] Length = 326 Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ +++ + E Q F E+VH+ ++ I ++L E+F+ + KA Sbjct: 76 SLRQNIRTQQETAVLNNIQ-FMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKA 134 Query: 160 N 160 N Sbjct: 135 N 135 >gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium jeikeium K411] gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium jeikeium K411] Length = 338 Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 17/129 (13%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +DL W N LTD ER + + +++ A Sbjct: 36 EIWQRLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGLTLLDTVQAT----- 87 Query: 104 IYRHLSNPECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSI 155 + P+ R AF +AVH+ ++ + +++ E E+ Y P++ Sbjct: 88 VGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSE-EINAAYTWAIGNPAL 146 Query: 156 TAKANWALQ 164 +A +Q Sbjct: 147 QRRATAVMQ 155 >gi|329767978|ref|ZP_08259489.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] gi|328838463|gb|EGF88071.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] Length = 322 Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 8/154 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANW 161 H + + E +H+ ++ I TSL + + + VPS + KA Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQFKAKL 133 Query: 162 ALQYTQTL---SSPSFHYWNKRRRSRILTRSLRF 192 Y L P++ + R S L + + Sbjct: 134 IEDYYMKLFKPEVPTYDLYMARVASVFLESYIFY 167 >gi|317049232|ref|YP_004116880.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] gi|316950849|gb|ADU70324.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] Length = 322 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +DL W++ L ++ + R Sbjct: 13 NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 70 DTIQNVIGAPGLMEDALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCNTADVDAAYRWSE 129 Query: 151 EVPSITAKANWALQYTQT 168 E ++ KA L++ + Sbjct: 130 ENEALQNKAKIVLEHYRA 147 >gi|281491477|ref|YP_003353457.1| ribonucleoside-diphosphate reductase subunit beta [Lactococcus lactis subsp. lactis KF147] gi|281375195|gb|ADA64708.1| Ribonucleoside-diphosphate reductase, beta chain [Lactococcus lactis subsp. lactis KF147] Length = 325 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 10/133 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY W + W+ T VP+ +DL W+ L ER + ++L + Sbjct: 27 KYTW-----EKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQS 78 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSI 155 + + P+ F E+VH+ ++ I ++L + ELFN + Sbjct: 79 VDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYM 138 Query: 156 TAKANWALQYTQT 168 KA + ++ Sbjct: 139 QTKAEIINKIYES 151 >gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus Lc 705] gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus Lc 705] Length = 326 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ +++ + E Q F E+VH+ ++ I ++L E+F+ + KA Sbjct: 76 SLRQNIRTQQETAVLNNIQ-FMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKA 134 Query: 160 N 160 N Sbjct: 135 N 135 >gi|15672956|ref|NP_267130.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. lactis Il1403] gi|12723917|gb|AAK05072.1|AE006332_1 ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. lactis Il1403] gi|326406518|gb|ADZ63589.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. lactis CV56] Length = 325 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 10/133 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY W + W+ T VP+ +DL W+ L ER + ++L + Sbjct: 27 KYTW-----EKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQS 78 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSI 155 + + P+ F E+VH+ ++ I ++L + ELFN + Sbjct: 79 VDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYM 138 Query: 156 TAKANWALQYTQT 168 KA + ++ Sbjct: 139 QTKAEIINKIYES 151 >gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus GG] gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus GG] gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG] Length = 326 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ +++ + E Q F E+VH+ ++ I ++L E+F+ + KA Sbjct: 76 SLRQNIRTQQETAVLNNIQ-FMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKA 134 Query: 160 N 160 N Sbjct: 135 N 135 >gi|255325476|ref|ZP_05366578.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] gi|255297414|gb|EET76729.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] Length = 362 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+ +T +ER + R + +++ A + Sbjct: 64 EVWNRLTANFWLPEKVPLSNDLPAWQK---MTPEERNLTMRVFTGLTTLDTVQATVGEIC 120 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + E Y AF ++VH+ ++ + ++L E+ YR Sbjct: 121 QIQDARTEHEEAVYTNI-AFMQSVHARSYSSVFSTLSS-TKEIDEAYR 166 >gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] Length = 321 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LPAKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFD 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNSNEFLQNKAK 135 >gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] Length = 319 Score = 64.5 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGVE 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 AI + P L F E+VH+ ++ I ++L E+F + KA Sbjct: 76 AIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNEYLQTKAK 135 >gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 322 Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDPEKEAFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + K++ Sbjct: 113 NYLLDKWVIEEPHLKYKSD 131 >gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMG 18311] gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus CNRZ1066] gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMD-9] gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus LMG 18311] gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus CNRZ1066] gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus LMD-9] gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus ND03] Length = 320 Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGVE 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 AI + P L F E+VH+ ++ I ++L E+F + KA Sbjct: 76 AIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNKYLQTKAK 135 >gi|116511803|ref|YP_809019.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris SK11] gi|125624347|ref|YP_001032830.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris MG1363] gi|116107457|gb|ABJ72597.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactococcus lactis subsp. cremoris SK11] gi|124493155|emb|CAL98119.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071131|gb|ADJ60531.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris NZ9000] Length = 325 Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 10/133 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY W + W+ T VP+ +DL W+ L ER + ++L + Sbjct: 27 KYTW-----EKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQS 78 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSI 155 + + P+ F E+VH+ ++ I ++L + ELFN + Sbjct: 79 VDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYM 138 Query: 156 TAKANWALQYTQT 168 KA + ++ Sbjct: 139 QTKAEIINKIYES 151 >gi|307132178|ref|YP_003884194.1| ribonucleoside-diphosphate reductase 2, subunit beta, ferritin-like protein [Dickeya dadantii 3937] gi|306529707|gb|ADM99637.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Dickeya dadantii 3937] Length = 330 Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 7/127 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++ + +D+ W L+D ER + R ++L A Sbjct: 32 EVWNRLTTNFWLPEKIALSNDMPSWAQ---LSDIERQLTLRVFTGLTLLDTLQNTQGAPA 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKAN 160 + P L F EAVH+ ++ I ++L L E+ + Y + KA Sbjct: 89 LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCL-TSEVDDAYSWSERNQPLQNKAA 147 Query: 161 WALQYTQ 167 L + Q Sbjct: 148 LILSHYQ 154 >gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 319 Score = 64.5 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + ++F Sbjct: 63 TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNLFLQNKAK 135 >gi|213159370|ref|YP_002321413.1| rr2 [Oryctes rhinoceros virus] gi|202073556|gb|ACH96232.1| rr2 [Oryctes rhinoceros virus] Length = 400 Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE-RLMIKRNLGFFASSESLV 96 K+ ++ +L + W E D +++ +T E + ++ +G A +S+V Sbjct: 55 KFKDTYDLWLKHQSCFWSVHENDPSVDRDRFET---MTPKEFQEILLCTVGCIAIGDSIV 111 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 + I + +++ E + Q E +H + ++ Sbjct: 112 LDRIANGLKERVTSIELKAMFSDQEAREFIHKKMYSNMLD 151 >gi|51557509|ref|YP_068343.1| ribonucleotide reductase subunit 2 [Suid herpesvirus 1] gi|1710400|sp|P50645|RIR2_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|437737|emb|CAA50977.1| ribonucleotide reductase [Suid herpesvirus 1] gi|525265|emb|CAA56776.1| ribonucleotid reductase, small subunit [Suid herpesvirus 1] gi|40253968|tpg|DAA02163.1| TPA_exp: small subunit of ribonucleotide reductase [Suid herpesvirus 1] gi|1090510|prf||2019240B ribonucleotide reductase:SUBUNIT=small Length = 303 Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DD L++ E + F ++++ LV N Sbjct: 10 PDMDHLRSLSVANRWLETDLPLGDDAKD---VAALSEPELEFYRFLFAFLSAADDLVNVN 66 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI-ITSLGLD---EGELFNMYREVPSI 155 + + + + Y + Q E VHS + I + D +I Sbjct: 67 LGS-LSELFTQKDILHYYIEQECIEVVHSRVYSAIQLMLFRGDAAARERYVRAALRDEAI 125 Query: 156 TAKANW 161 K W Sbjct: 126 RRKVEW 131 >gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] Length = 319 Score = 64.1 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + ++F Sbjct: 63 TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNLFLQNKAK 135 >gi|291618545|ref|YP_003521287.1| NrdF [Pantoea ananatis LMG 20103] gi|291153575|gb|ADD78159.1| NrdF [Pantoea ananatis LMG 20103] gi|327394924|dbj|BAK12346.1| ribonucleoside-diphosphate reductase 2 beta subunit NrdF [Pantoea ananatis AJ13355] Length = 319 Score = 64.1 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +DL W++ L + + R Sbjct: 10 NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQHQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNVLGAPGLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHTSDVDAAYQWSE 126 Query: 151 EVPSITAKANWALQYTQT 168 E ++ KA L + + Sbjct: 127 ENQALQNKAEIILTHYRA 144 >gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis FRI909] Length = 322 Score = 64.1 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + K++ Sbjct: 113 NYLLDTWVIEEPHLKYKSD 131 >gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis ATCC 12228] gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis RP62A] gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus epidermidis ATCC 12228] gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus epidermidis RP62A] gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU144] gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU028] gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU045] Length = 322 Score = 64.1 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + K++ Sbjct: 113 NYLLDTWVIEEPHLKYKSD 131 >gi|83722609|ref|YP_443887.1| ribonucleotide reductase subunit 2 [Papiine herpesvirus 2] gi|75905762|gb|ABA29294.1| UL40 [Papiine herpesvirus 2] Length = 339 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 11/173 (6%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + P + G V D + + + + N W+ +E+ Sbjct: 9 PAAAIQPRERGAAAAAVHDHPV--PDPERY-FYTTQCPDINHLRSLSILNRWLESELVFA 65 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D GLTD+E + F ++++ LV N+ + + Y + Q Sbjct: 66 GDEED---VAGLTDEELNFYRFLFTFLSAADDLVTENLG-GLSGLFPQKDILHYYVEQEA 121 Query: 123 EEAVHSHTFQYI-ITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSS 171 E VHS + I + DE E P+I K +W Q S Sbjct: 122 IEVVHSRVYSIIQLVLFRNDEQARREYVARTIHHPAIRVKVDWLEARVQACES 174 >gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] Length = 319 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKLTEQ---FWLDTRIPLSNDLDDWR---RLSAVEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + ++F Sbjct: 63 TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122 Query: 148 MYREVPSITAKAN 160 + KA Sbjct: 123 WTNNNVFLQNKAK 135 >gi|10140982|ref|NP_065559.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1] gi|81984051|sp|O36410|RIR2_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|2338023|gb|AAC58107.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1] Length = 305 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 13/159 (8%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + +E N W P ++ + D+ K + +++ + K F +E+LV Sbjct: 13 HPGFFELTQETFQNRWFPAQINLSVDV---KCLSLMSEADVNFYKYLFTFLGMAETLVNF 69 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPS 154 NI + + + Y Q E VH + I+ L + E + + Sbjct: 70 NIDELLVD-FECHDIKHYYCEQMAMECVHGKVYFNILNMLFKNNLAATWEFAEAVLKDEA 128 Query: 155 ITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + K W + ++ L + F+ Sbjct: 129 LQKKLEWLESKIK-----MAKTKAEKVLIFYLIEGVFFI 162 >gi|227833718|ref|YP_002835425.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454734|gb|ACP33487.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 341 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+ +T +ER + R + +++ A + Sbjct: 43 EVWNRLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEIC 99 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + E Y AF ++VH+ ++ + ++L E+ YR Sbjct: 100 QIQDARTEHEEAVYTNI-AFMQSVHARSYSSVFSTLSS-TKEIDEAYR 145 >gi|326336655|ref|ZP_08202823.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691125|gb|EGD33096.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 319 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 5/129 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + W+ +EV D+ +KS L+ E+ +KR L A Sbjct: 7 RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLIEKEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVAVKTFWGD-LYDIFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FETLL 121 Query: 151 EVPSITAKA 159 EVP + Sbjct: 122 EVPIFKERN 130 >gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] Length = 316 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + + A+ Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 ++ + R L F E++H+ T+ I+ SL D E++ + KA Sbjct: 77 KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYTWMNNDRRMQFKAK 133 >gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] Length = 316 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + + A+ Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 ++ + R L F E++H+ T+ I+ SL D E++ + KA Sbjct: 77 KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYTWMNNDRRMQFKAK 133 >gi|158079504|ref|YP_001504317.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] gi|157890348|dbj|BAF81476.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] Length = 327 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T VP+ +D+ W L+D E+ +I + G +++ + + V ++ Sbjct: 24 WKKLTEQFWLDTRVPVGNDVNDWAK---LSDMEQDLINKVFGGLTLLDTVQSESGVHSLL 80 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + L AF EAVH+ ++ I ++ E+ N++ V + LQY Sbjct: 81 DDVRTQHEEAVLNNIAFMEAVHAKSYSTIFSTFNTPT-EIDNIFEWVATNKR-----LQY 134 Query: 166 TQTLSSPSFHYWNK--RRRSRILTRSLRFL 193 + + + ++ + +L S F Sbjct: 135 KANIINDIYRNGTPLQKKSASVLLESFLFY 164 >gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] Length = 333 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 10 NWNQVSDMIDKATWEKLTEQ---FWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + A+ + + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 64 TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123 Query: 148 MYREVPSITAKA 159 + KA Sbjct: 124 WSDSEEYLQNKA 135 >gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007] Length = 642 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 10/137 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y + N W E+ DLA+W L + R IK L F A + +V Sbjct: 73 RYPVLADLADKLQANQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVK 129 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL------FNMYRE 151 I + + EC ++ Q E+ H + +T+ ++ EL + E Sbjct: 130 EAIPM-HMSNFPLTECGKFFQEQLINESEHQKLYTKFLTTFAHNKEELETLMHAYTNVEE 188 Query: 152 VPSITAKANWALQYTQT 168 + AK + + ++ Sbjct: 189 FAPLKAKVDLINEIYKS 205 >gi|58700007|ref|ZP_00374568.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533477|gb|EAL57915.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 74 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 102 LAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + Y ++ P E L + E +H + Y++ ++G+ + E ++ + + ++ K Sbjct: 1 MRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPDSE-YHAFLKYDAMRKKYE 59 Query: 161 WALQYTQTLS 170 + L++ + + Sbjct: 60 YMLEFEDSTT 69 >gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] Length = 320 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAKEKDLVGKVFGGLTLLDTMQSQTGVE 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 AI + P L F E+VH+ ++ I ++L E+F + KA Sbjct: 76 AIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNKYLQTKAK 135 >gi|262184725|ref|ZP_06044146.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium aurimucosum ATCC 700975] Length = 306 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+ +T +ER + R + +++ A + Sbjct: 8 EVWNRLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEIC 64 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + E Y AF ++VH+ ++ + ++L E+ YR Sbjct: 65 QIQDARTEHEEAVYTNI-AFMQSVHARSYSSVFSTLSS-TKEIDEAYR 110 >gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 334 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 ++ AR ++ E + N W+P +VP+ +DLA W+ LTD ER + Sbjct: 14 RKDPAARLRPINWNRVQDDKDLEVWNRLTANFWLPEKVPLSNDLADWR---RLTDLEREL 70 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + +++ A+ + I + E Y AF +AVH+ ++ + ++L Sbjct: 71 TMKVFTGLTMLDTVQASVGEISQIQDARTEHEEAVYTNI-AFMQAVHAKSYSSVFSTLSN 129 Query: 141 DEG 143 Sbjct: 130 TPD 132 >gi|308178758|ref|YP_003918164.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter arilaitensis Re117] gi|307746221|emb|CBT77193.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter arilaitensis Re117] Length = 341 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 10/110 (9%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+ LT +ER + R +++ A V Sbjct: 43 EVWNRLTANFWLPEKVPLSNDLPAWEK---LTQEERTLTMRVFTGLTMLDTVQAT--VGE 97 Query: 104 IYRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + + + + AF +AVH+ ++ + ++L E+ + YR Sbjct: 98 ICQ-IQDSQTEHEEAVYTNIAFMQAVHARSYSSVFSTLTSTP-EIDSAYR 145 >gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus fermentum IFO 3956] gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 333 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 10 NWNQVSDMIDKATWEKLTEQ---FWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + A+ + + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 64 TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123 Query: 148 MYREVPSITAKA 159 + +KA Sbjct: 124 WSDSEEYLQSKA 135 >gi|239636654|ref|ZP_04677656.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus warneri L37603] gi|239598009|gb|EEQ80504.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus warneri L37603] gi|330683860|gb|EGG95634.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU121] Length = 324 Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 70/174 (40%), Gaps = 19/174 (10%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEKNTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKANWALQYTQTL---SSPSFHYWNKRRRSRILTRSLRF 192 L + + E P + K++ ++ L + F + R S L L + Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIENYHKLWGKEASIFDQYIARVSSVFLETFLFY 166 >gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] Length = 322 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 19/174 (10%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L+D ER K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSDSERETFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKANWALQYTQTL---SSPSFHYWNKRRRSRILTRSLRF 192 L + + E P + K++ + L + F + R S L L + Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIDNYHKLWGKEASIFDQYIARVSSVFLETFLFY 166 >gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] Length = 322 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 19/174 (10%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKETFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKANWALQYTQTL---SSPSFHYWNKRRRSRILTRSLRF 192 L + + E P + K++ + L + F + R S L L + Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIDNYHKLWGKEASIFDQYIARVSSVFLETFLFY 166 >gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 D QL P++Y WA+ Y A N W P EV + DLA +K+ L R+++K+ L Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKN---LQKTRRMLLKQLLA 70 >gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus pentosaceus ATCC 25745] gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Pediococcus pentosaceus ATCC 25745] Length = 317 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 8/152 (5%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + Sbjct: 21 WEKLTEQ---FWLDTRIPISNDLSDWRE---LDEDHKWVVGHVFGGLTLLDTLQSQDGMA 74 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ + + P L F E+VH+ ++ I +L E+F + K Sbjct: 75 ALRKDIRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPSEIDEIFAWSDSEEFLQNKTK 134 Query: 161 WALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + P + L S F Sbjct: 135 RIYELYHDDEHPLKKKISSVFLETFLFYSGFF 166 >gi|56694763|ref|YP_164483.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 2] gi|52843315|gb|AAU88106.1| small subunit of ribonucleotide reductase [Cercopithecine herpesvirus 2] Length = 325 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 8/136 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ +E+ D GLTD+E + F ++++ LV N Sbjct: 29 PDINHLRSLSILNRWLESELVFAGDEED---VGGLTDEELNFYRFLFTFLSAADDLVTEN 85 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 86 LG-GLSGLFPQKDILHYYVEQEAIEVVHSRVYSIIQLVLFRNDGQARREYVARTIHHPAI 144 Query: 156 TAKANWALQYTQTLSS 171 K +W Q S Sbjct: 145 RVKVDWLEARVQACES 160 >gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 24 NWASLPLKLFAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 80 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 81 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 129 >gi|222081801|ref|YP_002541166.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium radiobacter K84] gi|221726480|gb|ACM29569.1| ribonucleoside-diphosphate reductase [Agrobacterium radiobacter K84] Length = 329 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W L +E+ + R Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSWA---ALKPEEQQLTIRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + + +F EAVH+ ++ I ++L D + + Sbjct: 77 DTIQTSIGAPTLMEDSITSHEEAVYSNISFMEAVHARSYSSIFSTLCSTPDIDDAYRWSE 136 Query: 151 EVPSITAKANWALQYTQT 168 E + K+ L+ + Sbjct: 137 ENEHLQRKSALILEQYRN 154 >gi|30984468|ref|NP_851900.1| ribonucleotide reductase subunit 2 [Macacine herpesvirus 1] gi|28804676|dbj|BAC58080.1| ribonucleotide reductase small subunit [Cercopithecine herpesvirus 1] gi|30844282|gb|AAP41458.1| small subunit of ribonucleotide reductase [Macacine herpesvirus 1] Length = 338 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 8/136 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ +E+ D +GLTDDE + F ++++ LV N Sbjct: 42 PDINHLRSLSILNRWLESELVFAGDEED---VHGLTDDELNFYRFLFTFLSAADDLVTEN 98 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E + P+I Sbjct: 99 LG-GLSGLFPQKDILHYYVEQEAIEVVHSRVYSIIQLVLFHNNEQARREYVSRTIHHPAI 157 Query: 156 TAKANWALQYTQTLSS 171 K W Q S Sbjct: 158 RVKVEWLEARVQACES 173 >gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] Length = 323 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium tuberculosis H37Rv] gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB [Mycobacterium tuberculosis H37Ra] gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] Length = 314 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 305 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 10/114 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P ++ D A W+ LT+DER R F + E V +I Sbjct: 15 LFAGGNAKFWNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDI-QPF 70 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + E R YL + AFEEA H F+ + ++G+ E L ++P+ Sbjct: 71 MSAMRV-EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTED-LHQYLDDIPT 122 >gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] Length = 317 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] Length = 321 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|227504052|ref|ZP_03934101.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199382|gb|EEI79430.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 304 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL+ W+ +T ER + R + +++ A + Sbjct: 8 EVWNRLTANFWLPEKVPLSNDLSAWQK---MTPSERNLTMRVFTGLTTLDTVQATVGEIC 64 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + E + AF ++VH+ ++ + ++L E+ YR Sbjct: 65 QIQDARTEHE-QAVYTNIAFMQSVHARSYSSVFSTLSS-TKEIDEAYR 110 >gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 320 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ D A W+ LT+ ER R F + E V +I Sbjct: 22 KLFAGGNAKFWDPADIDFSRDRADWE---ALTEREREYATRLCAEFIAGEEAVTKDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + E R YL + AFEEA H+ F+ + ++G+ +L ++ EVP+ Sbjct: 78 FMSAMRA-EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGV-TDDLHSLIEEVPA 130 >gi|300870141|ref|YP_003785012.1| ribonucleotide-diphosphate reductase subunit beta [Brachyspira pilosicoli 95/1000] gi|300687840|gb|ADK30511.1| ribonucleotide-diphosphate reductase beta subunit [Brachyspira pilosicoli 95/1000] Length = 359 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 59/149 (39%), Gaps = 5/149 (3%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 EK+ N++++R+ ++ + + A + ++ N W EV + D + Sbjct: 7 EKKPNLENERIFFGDFGHYIRIDSVSHEIARKLKEASEGNTWFSKEVDYKSDKT---RFS 63 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L +D + K N+ + +S V + + R +++ R A EE +H+ ++ Sbjct: 64 SLPEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYSRIAIEEVIHAESYS 123 Query: 133 Y-IITSLGLDEGELFNMYREVPSITAKAN 160 Y + G E ++ + + Sbjct: 124 YGLSEVFGHLATETLDLVYNDEFVKHRME 152 >gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] Length = 322 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT+DE+ KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + K++ Sbjct: 113 NYLLDTWVIEEPHLKYKSD 131 >gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] Length = 321 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ L+D E+ + G F +++ + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGFTLLDTVQSESGMD 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + + P L F E+VH+ ++ I ++L + ++F + KA Sbjct: 76 QLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAE 135 >gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] Length = 322 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT+DE+ KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H ++ + E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMYR-EVPSITAKAN 160 L + + E P + K++ Sbjct: 113 NYLLDTWVIEEPHLKYKSD 131 >gi|46401830|ref|YP_006922.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage T5] gi|45775008|gb|AAS77140.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage T5] gi|51512032|gb|AAU05231.1| ribonucleotide reductase beta subunit [Enterobacteria phage T5] gi|59897231|gb|AAX12026.1| ribonucleoside diphosphate reductase I beta chain [Enterobacteria phage T5] Length = 381 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + L + + + + L A + W TE+ ++ D W L + + Sbjct: 13 NKDLFLGDSLGIADYVRVAHPELERLALLARSQFWTETEISLEADKKQW---PNLPREIQ 69 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + NL + ++S ++ AI +S PE L + ++ E +HS + II ++ Sbjct: 70 EITLLNLAWQTQTDSFISRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVL 129 Query: 140 LDEGELFNMY 149 D E + Sbjct: 130 TDPAEFIDSV 139 >gi|1710396|sp|P50644|RIR2_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|515833|emb|CAA53101.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4] Length = 320 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 L + N W+ T++P+ DDL L ER + F ++++ LV N Sbjct: 27 PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + + + + Y + Q E HS + I Sbjct: 84 LGD-LSALFTQKDILHYYIEQESIEVTHSRVYSAI 117 >gi|9629745|ref|NP_045237.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 4] gi|2605963|gb|AAC59535.1| 20 [Equid herpesvirus 4] Length = 320 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 L + N W+ T++P+ DDL L ER + F ++++ LV N Sbjct: 27 PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + + + + Y + Q E HS + I Sbjct: 84 LGD-LSALFTQKDILHYYIEQESIEVTHSRVYSAI 117 >gi|296127719|ref|YP_003634971.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563] gi|296019535|gb|ADG72772.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563] Length = 357 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 4/125 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + + A + ++ N W EV + D + L +D + K N+ + +S V Sbjct: 29 VSHEIARKLKEASEGNTWFSKEVDYKSDKT---RFSSLPEDAQRAFKLNIAYQTLMDSGV 85 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY-IITSLGLDEGELFNMYREVPSI 155 + + R +++ R A EE +H+ ++ Y + G E ++ + Sbjct: 86 TSGFSSILNRIVTSSIWSILYARIAIEENIHAESYSYGLSEVFGHQASETLDLVYNDEFV 145 Query: 156 TAKAN 160 + Sbjct: 146 KHRME 150 >gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Mycobacterium tuberculosis CDC1551] gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium bovis AF2122/97] gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB [Mycobacterium tuberculosis F11] gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CDC1551A] gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis W-148] gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 4207] Length = 314 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] Length = 314 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 311 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] Length = 314 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|227542806|ref|ZP_03972855.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181432|gb|EEI62404.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51866] Length = 335 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ W N L + E++ R Sbjct: 26 NWNEIEDEKDQEVWDRLTGNFWLPEKIPVSNDIPSW---NTLNETEQIATMRVFTGLTLL 82 Query: 93 ESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V I +++ E Y AF E+VH+ ++ I +L + F Sbjct: 83 DTIQGTVGAVSLIPDAVTHHEEAVYTNI-AFMESVHAKSYSNIFMTLASTPMINDAFRWS 141 Query: 150 REVPSITAKANWALQ 164 E ++ K L+ Sbjct: 142 EENVNLQRKGEIILR 156 >gi|227488208|ref|ZP_03918524.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091778|gb|EEI27090.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51867] Length = 335 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ W N L + E++ R Sbjct: 26 NWNEIEDEKDQEVWDRLTGNFWLPEKIPVSNDIPSW---NTLNETEQIATMRVFTGLTLL 82 Query: 93 ESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V I +++ E Y AF E+VH+ ++ I +L + F Sbjct: 83 DTIQGTVGAVSLIPDAVTHHEEAVYTNI-AFMESVHAKSYSNIFMTLASTPMINDAFRWS 141 Query: 150 REVPSITAKANWALQ 164 E ++ K L+ Sbjct: 142 EENVNLQRKGEIILR 156 >gi|260904664|ref|ZP_05912986.1| ribonucleoside-diphosphate reductase beta chain [Brevibacterium linens BL2] Length = 341 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +D+ W+ LT ER + R +++ A + Sbjct: 43 EVWNRLTANFWLPEKVPLSNDIPAWQ---RLTQVERTLTMRVFTGLTMLDTVQATVGEIC 99 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + E Y AF ++VH+ ++ + ++L E+ + YR Sbjct: 100 QIQDARTEHEEAVYTNI-AFMQSVHARSYSSVFSTLST-TVEIDDAYR 145 >gi|139472853|ref|YP_001129417.1| ORF60 [Human herpesvirus 8] gi|1718316|gb|AAC57145.1| ORF 60 [Human herpesvirus 8 type M] gi|2246534|gb|AAB62659.1| ORF 60 [Human herpesvirus 8] gi|87196889|gb|ABD28915.1| ORF60 [Human herpesvirus 8] gi|261853541|gb|ACY00463.1| ORF60 [Human herpesvirus 8] gi|312275208|gb|ADQ57945.1| core gene UL40 family protein [Human herpesvirus 8] Length = 305 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 27/161 (16%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN---IVLAIYRH 107 N W P+++P+ D++ L+D ++ + F +E LV N +V H Sbjct: 25 QNRWFPSQIPLHLDVSHVHQ---LSDADKDFYRFLFTFLGMAERLVNFNIEDLVTNFNSH 81 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-EGELF---NMYREVPSITAKANWAL 163 + Y Q E +H + I+ + GEL P++ K W Sbjct: 82 ----DVAHYYAEQVAMENIHGVVYANILKIFFNNSRGELLAYAAKIILDPALCEKLEWLH 137 Query: 164 QYTQTLSSPSFHYWNKRRRSRILTRSLRFL--------CRV 196 + + ++ ++ + F+ CRV Sbjct: 138 SRVRKAT-----TKAQKILMFLIVEGIYFISSFYSISLCRV 173 >gi|259907588|ref|YP_002647944.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia pyrifoliae Ep1/96] gi|224963210|emb|CAX54694.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia pyrifoliae Ep1/96] gi|283477430|emb|CAY73346.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia pyrifoliae DSM 12163] Length = 319 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L +++ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLNAEQQQLTIRVFTGLTLL 66 Query: 93 ESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149 +++ + L+ E +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTQHEEAVMSNI-SFMEAVHARSYSSIFSTLCNTSDVDAAYAWS 125 Query: 150 REVPSITAKANWALQ 164 + + KA LQ Sbjct: 126 EDNAPLQGKAQIILQ 140 >gi|116490256|ref|YP_809800.1| ribonucleotide-diphosphate reductase subunit beta [Oenococcus oeni PSU-1] gi|290889638|ref|ZP_06552728.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429] gi|116090981|gb|ABJ56135.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Oenococcus oeni PSU-1] gi|290480836|gb|EFD89470.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429] Length = 337 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +D+ W+S L E + G ++L + + + Sbjct: 28 WEKLTEQ---FWLDTRIPISNDMKDWRS---LGPVEHKLYDHVFGGLTMLDTLQSQDGMA 81 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 ++ P R L F E+VH+ ++ I +L E+F+ + + KAN Sbjct: 82 SLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDWASKNEQLQYKAN 141 >gi|315153942|gb|EFT97958.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0031] Length = 321 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTFLDTVQSESGMD 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + + P L F E+VH+ ++ I ++L + ++F + KA Sbjct: 76 QLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAE 135 >gi|295397900|ref|ZP_06807962.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973880|gb|EFG49645.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 323 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 28 RSDVNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 + N + + + + + W+ T +P+ +DL W++ L+ E+ MI Sbjct: 3 NFNENPYIAINWNDIEDMIDKLTWEKLTEQFWLDTRIPLSNDLDTWRT---LSAREQDMI 59 Query: 83 KRNLGFFASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + G ++L + + + ++ + + E Y Q F E+VH+ ++ I ++L Sbjct: 60 GKVFGGLTLLDTLQSEDGMESLKASIRTQHEEAVYNNIQ-FMESVHAKSYSSIFSTLNTP 118 Query: 142 E--GELFNMYREVPSITAKAN 160 + ++F RE I KAN Sbjct: 119 KEIDKIFAWTRENEFIQYKAN 139 >gi|289803661|ref|ZP_06534290.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 106 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 +++ ++ P L +F EAVH+ ++ Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYS 106 >gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] Length = 210 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%) Query: 40 GWAW---EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +I + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 72 TEDI-QPFMSAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 120 >gi|194172964|ref|YP_002003608.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage rv5] gi|114796002|gb|ABI79176.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage rv5] Length = 362 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY +E Y W EV + ++ + + + T D ++ + L + ++S+ A Sbjct: 33 KYPQLFELYKKQKEQDWAEDEVDLSQSISDFVTCSKSTYD---VMVQTLMWQWEADSVAA 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +I+ ++N E L++Q+ E +H+ T+ I+ + E+ +E ++ + Sbjct: 90 RSIICLFSPFITNSELFTLLMKQSEIEVLHALTYSEIVRQCLPNAREIIEEIQENQNVLS 149 Query: 158 KANWALQYTQTLS 170 ++ ++Y Q L Sbjct: 150 RSGVIVKYMQELE 162 >gi|328957625|ref|YP_004375011.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328673949|gb|AEB29995.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 320 Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK + W T +P+ +DL W L +E+ M+ + G Sbjct: 9 NWNNIEDMIDKLTWEKLVEQ---FWTDTRIPLSNDLDDWA---RLPKNEKDMVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELF 146 ++L + + V ++ + + + E Y Q F E++H+ ++ I ++L L+ E+F Sbjct: 63 TLLDTLQSQDGVQSLKQSIRTQHEEAVYNNIQ-FMESMHAKSYSAIFSTLNSKLEIDEIF 121 Query: 147 NMYREVPSITAKA 159 + KA Sbjct: 122 QWTNTDELLQLKA 134 >gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] Length = 319 Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGVE 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 AI + P L F E+VH+ ++ I ++L ++F + KA Sbjct: 76 AIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQTKAK 135 >gi|225619347|ref|YP_002720573.1| ribonucleoside-diphosphate reductase subunit beta [Brachyspira hyodysenteriae WA1] gi|225214166|gb|ACN82900.1| ribonucleoside-diphosphate reductase, beta subunit [Brachyspira hyodysenteriae WA1] Length = 356 Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 4/125 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + + A + ++ N W EV + D + L +D + K N+ + +S V Sbjct: 29 VSHEVARKLKEASEGNTWFSKEVDYKSDKT---RFSSLPEDAQRAFKLNIAYQTLMDSGV 85 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY-IITSLGLDEGELFNMYREVPSI 155 + + R +++ R A EE +H+ ++ Y + G + + ++ + Sbjct: 86 TSGFSSILNRIVTSSIWSILYARIAIEENIHAESYSYGLSEVFGHEATDTLDLVYNDEFV 145 Query: 156 TAKAN 160 + Sbjct: 146 KHRME 150 >gi|60416874|emb|CAD71197.1| ribonucleoside-diphosphate reductase small subunit [Bacillus subtilis] Length = 123 Score = 62.2 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFN 147 H+ + + L A E VH+ ++ I +L E E+F Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFE 123 >gi|312869696|ref|ZP_07729843.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus oris PB013-T2-3] gi|311094745|gb|EFQ53042.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus oris PB013-T2-3] Length = 339 Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 11/161 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +D+ W++ L +D + + G Sbjct: 16 NWNEISDMIDKATWEKLTEQ---FWLDTRIPVSNDMDDWRN---LDEDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +++ + + A+ + + E Q F E+VH+ ++ I ++L + E+F Sbjct: 70 TLLDTVQSEAGLTALKEDVKTQHETAVLNNIQ-FMESVHAKSYSTIFSTLNTPDQIDEIF 128 Query: 147 NMYREVPSITAKA-NWALQYTQTLSSPSFHYWNKRRRSRIL 186 N + KA A Y P L Sbjct: 129 NWSDTEEYLQNKATKIANMYLNPAEDPLKKKVANVFLETFL 169 >gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str. Zhang] gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str. Zhang] Length = 326 Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+S L DE+ ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ +++ + E Q F E+VH+ ++ I ++L E+F+ + KA Sbjct: 76 SLRQNIRTQQETAVLNNIQ-FMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKA 134 Query: 160 N 160 N Sbjct: 135 N 135 >gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei ATCC 334] gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei BL23] gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus casei ATCC 334] gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus casei BL23] gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W] gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II] Length = 326 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+S L DE+ ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ +++ + E Q F E+VH+ ++ I ++L E+F+ + KA Sbjct: 76 SLRQNIRTQQETAVLNNIQ-FMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKA 134 Query: 160 N 160 N Sbjct: 135 N 135 >gi|289824705|ref|ZP_06544204.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 141 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFE 123 + +A+ +S PE ++ AF Sbjct: 90 RSPNVALLPLISIPELETWVETWAFS 115 >gi|258423381|ref|ZP_05686272.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9635] gi|257846442|gb|EEV70465.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9635] Length = 323 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + + H ++ + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMY-REVPSITAKAN 160 L +++ E P + K++ Sbjct: 113 NYLLDVWVLEEPHLKYKSD 131 >gi|311741268|ref|ZP_07715092.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] gi|311303438|gb|EFQ79517.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] Length = 341 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+ +T +ER + R + +++ A + Sbjct: 43 EVWNRLTTNFWLPEKVPLSNDLPAWQK---MTPEERNLTMRVFTGLTTLDTVQATVGEIC 99 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + E Y AF ++VH+ ++ + ++L E+ YR Sbjct: 100 QIQDARTEHEEAVYTNI-AFMQSVHARSYSSVFSTLSS-TKEIDEAYR 145 >gi|182682906|ref|YP_001837030.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage EPS7] gi|182630618|gb|ACB97550.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage EPS7] Length = 381 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + L + + + + L + W TE+ ++ D W L D + Sbjct: 13 NADLFLGDSLGIADYVRVAHPELERLALLQRSQFWTETEISLEADKKQW---PNLPRDIQ 69 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + NL + ++S ++ AI +S PE L + ++ E +HS + II ++ Sbjct: 70 EITLLNLAWQTQTDSFISRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVL 129 Query: 140 LDEGE 144 D E Sbjct: 130 TDPAE 134 >gi|317495971|ref|ZP_07954333.1| ribonucleotide reductase [Gemella moribillum M424] gi|316913875|gb|EFV35359.1| ribonucleotide reductase [Gemella moribillum M424] Length = 322 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 8/154 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR-EVPSITAKANW 161 H + + E +H+ ++ I TSL + L + + + KA Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNEELQYKAQL 133 Query: 162 ALQYTQTL---SSPSFHYWNKRRRSRILTRSLRF 192 Y L P++ + R S L + + Sbjct: 134 IESYYLKLFKPEVPTYDLYMARVASVFLESYIFY 167 >gi|148543559|ref|YP_001270929.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri DSM 20016] gi|184152966|ref|YP_001841307.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri JCM 1112] gi|227363481|ref|ZP_03847603.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM2-3] gi|325681909|ref|ZP_08161427.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM4-1A] gi|148530593|gb|ABQ82592.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus reuteri DSM 20016] gi|183224310|dbj|BAG24827.1| ribonucleotide diphosphate reductase beta subunit [Lactobacillus reuteri JCM 1112] gi|227071495|gb|EEI09796.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM2-3] gi|324978553|gb|EGC15502.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM4-1A] Length = 339 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 11/164 (6%) Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 VNQ + + + + W+ T +P+ +D+ W+ L DD + + Sbjct: 9 VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 G +++ + + A+ + P L F E+VH+ ++ I ++L + Sbjct: 66 FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125 Query: 144 ELFNMYREVPSITAKA-NWALQYTQTLSSPSFHYWNKRRRSRIL 186 E+F + KA A Y P L Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKKVANVFLETFL 169 >gi|194468106|ref|ZP_03074092.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23] gi|194452959|gb|EDX41857.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23] Length = 339 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 11/164 (6%) Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 VNQ + + + + W+ T +P+ +D+ W+ L DD + + Sbjct: 9 VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 G +++ + + A+ + P L F E+VH+ ++ I ++L + Sbjct: 66 FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125 Query: 144 ELFNMYREVPSITAKA-NWALQYTQTLSSPSFHYWNKRRRSRIL 186 E+F + KA A Y P L Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKKVANVFLETFL 169 >gi|15923722|ref|NP_371256.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu50] gi|15926409|ref|NP_373942.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus N315] gi|21282423|ref|NP_645511.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MW2] gi|49482989|ref|YP_040213.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MRSA252] gi|49485604|ref|YP_042825.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MSSA476] gi|57651569|ref|YP_185668.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus COL] gi|82750436|ref|YP_416177.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus RF122] gi|87162072|ref|YP_493420.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194508|ref|YP_499303.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267192|ref|YP_001246135.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus JH9] gi|150393241|ref|YP_001315916.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus JH1] gi|151220913|ref|YP_001331735.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. Newman] gi|156979060|ref|YP_001441319.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu3] gi|161508997|ref|YP_001574656.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141144|ref|ZP_03565637.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315835|ref|ZP_04839048.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731358|ref|ZP_04865523.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732821|ref|ZP_04866986.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|255005523|ref|ZP_05144124.2| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424852|ref|ZP_05601279.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427520|ref|ZP_05603919.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430151|ref|ZP_05606535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257432852|ref|ZP_05609212.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus E1410] gi|257435756|ref|ZP_05611804.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257794947|ref|ZP_05643926.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9781] gi|258418263|ref|ZP_05682528.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9763] gi|258421560|ref|ZP_05684485.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9719] gi|258430755|ref|ZP_05688467.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9299] gi|258441753|ref|ZP_05691025.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A8115] gi|258445806|ref|ZP_05693983.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6300] gi|258449617|ref|ZP_05697719.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6224] gi|258452940|ref|ZP_05700934.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5948] gi|258454017|ref|ZP_05701989.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5937] gi|262049516|ref|ZP_06022386.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus D30] gi|262052319|ref|ZP_06024522.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus 930918-3] gi|269202352|ref|YP_003281621.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|282894500|ref|ZP_06302729.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A8117] gi|282903362|ref|ZP_06311253.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282905140|ref|ZP_06312998.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908118|ref|ZP_06315949.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910377|ref|ZP_06318181.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913572|ref|ZP_06321361.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282918525|ref|ZP_06326262.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282922028|ref|ZP_06329725.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9765] gi|282923491|ref|ZP_06331171.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282926597|ref|ZP_06334227.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A10102] gi|283957564|ref|ZP_06375017.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|284023753|ref|ZP_06378151.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 132] gi|293500617|ref|ZP_06666468.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509565|ref|ZP_06668276.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|293524151|ref|ZP_06670838.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|294849402|ref|ZP_06790145.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|295406453|ref|ZP_06816259.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|295427309|ref|ZP_06819944.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275141|ref|ZP_06857648.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MR1] gi|297208541|ref|ZP_06924970.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245179|ref|ZP_06929053.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297590338|ref|ZP_06948977.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|300912633|ref|ZP_07130076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|304381650|ref|ZP_07364299.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|4490610|emb|CAB38643.1| ribonucleotide reductase minor subunit [Staphylococcus aureus] gi|13700623|dbj|BAB41920.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus N315] gi|14246501|dbj|BAB56894.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus Mu50] gi|14329710|emb|CAC40668.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus aureus] gi|21203860|dbj|BAB94559.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus MW2] gi|49241118|emb|CAG39796.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus MRSA252] gi|49244047|emb|CAG42473.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285755|gb|AAW37849.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus COL] gi|82655967|emb|CAI80371.1| ribonucelotide diphosphate reductase beta chain [Staphylococcus aureus RF122] gi|87128046|gb|ABD22560.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202066|gb|ABD29876.1| ribonucleotide-disphosphate reductase beta chain, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740261|gb|ABQ48559.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945693|gb|ABR51629.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus JH1] gi|150373713|dbj|BAF66973.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus str. Newman] gi|156721195|dbj|BAF77612.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus Mu3] gi|160367806|gb|ABX28777.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724883|gb|EES93612.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729186|gb|EES97915.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|257272422|gb|EEV04545.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275713|gb|EEV07186.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279348|gb|EEV09949.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257282267|gb|EEV12402.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus E1410] gi|257284947|gb|EEV15066.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257788919|gb|EEV27259.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9781] gi|257839056|gb|EEV63535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9763] gi|257842486|gb|EEV66910.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9719] gi|257849427|gb|EEV73397.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9299] gi|257852222|gb|EEV76149.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A8115] gi|257855382|gb|EEV78320.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6300] gi|257857125|gb|EEV80024.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6224] gi|257859451|gb|EEV82305.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5948] gi|257863882|gb|EEV86638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5937] gi|259159759|gb|EEW44800.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus 930918-3] gi|259162352|gb|EEW46924.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus D30] gi|262074642|gb|ACY10615.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|269940309|emb|CBI48686.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus TW20] gi|282314359|gb|EFB44749.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282317659|gb|EFB48031.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282322604|gb|EFB52926.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282325769|gb|EFB56077.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327783|gb|EFB58065.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331965|gb|EFB61476.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282591490|gb|EFB96562.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A10102] gi|282593686|gb|EFB98678.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9765] gi|282596317|gb|EFC01278.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282763213|gb|EFC03344.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A8117] gi|283470026|emb|CAQ49237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus ST398] gi|283791015|gb|EFC29830.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|285816434|gb|ADC36921.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus aureus 04-02981] gi|290921114|gb|EFD98175.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095622|gb|EFE25883.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467662|gb|EFF10177.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|294823934|gb|EFG40360.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|294968598|gb|EFG44621.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|295128697|gb|EFG58328.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886796|gb|EFH25700.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177850|gb|EFH37099.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297576637|gb|EFH95352.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|298694063|gb|ADI97285.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus ED133] gi|300886879|gb|EFK82081.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|302332442|gb|ADL22635.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|302750629|gb|ADL64806.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339753|gb|EFM05698.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438843|gb|ADQ77914.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH60] gi|312829224|emb|CBX34066.1| ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129414|gb|EFT85407.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS03] gi|315194351|gb|EFU24743.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS00] gi|315196404|gb|EFU26755.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS01] gi|320139937|gb|EFW31798.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320141974|gb|EFW33802.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323438919|gb|EGA96654.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus O11] gi|323441867|gb|EGA99507.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus O46] gi|329313453|gb|AEB87866.1| Ribonucleoside-diphosphate reductase class Ib beta subunit [Staphylococcus aureus subsp. aureus T0131] gi|329724628|gb|EGG61135.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21172] gi|329728537|gb|EGG64970.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21189] Length = 323 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + + H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKAN 160 + E P + K++ Sbjct: 113 NYLLDEWVLEEPHLKYKSD 131 >gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter irgensii 23-P] gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter irgensii 23-P] Length = 424 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 13/162 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P Y E + +++W+ TE D+ +K+ L++ E+ IK + + Sbjct: 107 RLNLKPYDYPALTEYVDAIRHSYWIHTEFNYTSDIQDFKAY--LSETEKSAIKNTMLAIS 164 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V IY+ + PE A E H + +++ LGL+ N + Sbjct: 165 QIEVAVKTFWGD-IYKKMPKPEIGAVGSTFAESEVRHHDAYSHLLEILGLN-----NEFE 218 Query: 151 EVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + K ++ L + + F Sbjct: 219 NL----KKNPVMMRRVNYLEG-ALKNVKSEDNKEFSESIILF 255 >gi|308187851|ref|YP_003931982.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans C9-1] gi|308058361|gb|ADO10533.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans C9-1] Length = 326 Score = 61.8 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +DL W++ L ++ + R Sbjct: 17 NWNRIQDDKDLEVWNRLTSNFWLPEKVPLSNDLPGWQT---LDKQQQQLTIRVFTGLTLL 73 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 74 DTIQNVIGAPGLMEDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSE 133 Query: 151 EVPSITAKANWALQYTQT 168 E + KA L++ + Sbjct: 134 ENGPLQNKARIILEHYRA 151 >gi|227545165|ref|ZP_03975214.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri CF48-3A] gi|300909160|ref|ZP_07126621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri SD2112] gi|227184848|gb|EEI64919.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri CF48-3A] gi|300893025|gb|EFK86384.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri SD2112] Length = 339 Score = 61.4 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 11/164 (6%) Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 VNQ + + + + W+ T +P+ +D+ W+ L DD + + Sbjct: 9 VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 G +++ + + A+ + P L F E+VH+ ++ I ++L + Sbjct: 66 FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125 Query: 144 ELFNMYREVPSITAKA-NWALQYTQTLSSPSFHYWNKRRRSRIL 186 E+F + KA A Y P L Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKKVANVFLETFL 169 >gi|282916074|ref|ZP_06323837.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|283769895|ref|ZP_06342787.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus H19] gi|282320022|gb|EFB50369.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|283460042|gb|EFC07132.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus H19] Length = 323 Score = 61.4 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + + H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKAN 160 + E P + K++ Sbjct: 113 NYLLDEWVLEEPHLKYKSD 131 >gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 211 Score = 61.4 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 16/68 (23%) Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + +I +L D+ E LFN +PSI KA WA ++ + + Sbjct: 1 MYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIAS-------------DTSFD 47 Query: 187 TRSLRFLC 194 TR + F C Sbjct: 48 TRCVAFAC 55 >gi|703073|gb|AAA80557.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2] Length = 354 Score = 61.4 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 9/141 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL +E+ + F ++++ LV N Sbjct: 63 PDIGNLRSLSIMNRWTETEFVIADDLEDVGKLK----NEKNFYRFLFTFLSAADDLVNLN 118 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI-ITSLGLD---EGELFNMYREVPSI 155 I ++ + + Y Q EAVHS + I + D E P+I Sbjct: 119 I-DSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 177 Query: 156 TAKANWALQYTQTLSSPSFHY 176 +K W + +S + Y Sbjct: 178 LSKLEWLERRVAECTSIAEKY 198 >gi|312162814|ref|YP_003933799.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1] gi|308096447|gb|ADO13787.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1] Length = 338 Score = 61.4 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 8/164 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A +T L P+ + +D + + + N W+ TE+ Sbjct: 4 AESTALFPVSSPCPEEVGNDYPVPTCPHPERYFYTSQCPDINHLRSLSILNRWLETELVF 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D LT E + F ++++ LV N+ + + Y + Q Sbjct: 64 AGDEED---VAALTPGELGFYRFLFTFLSAADDLVTENLG-NLAALFPQKDILHYYVEQE 119 Query: 122 FEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANW 161 EAVH+ + + L + E P+I K W Sbjct: 120 CIEAVHARVYGIVQLVLFANNEASRREYVAHTINHPAIRDKVEW 163 >gi|260583950|ref|ZP_05851698.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella elegans ATCC 700633] gi|260158576|gb|EEW93644.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella elegans ATCC 700633] Length = 336 Score = 61.4 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 10/134 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D NQ+ + WEK W+ T +P+ +DL W++ L+ E+ ++ + G Sbjct: 26 DWNQVEDMIDKMTWEKLTEQ---FWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 79 Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 ++L + + ++ + E + Q F E+VH+ ++ I ++L E+F Sbjct: 80 TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQ-FMESVHAKSYSTIFSTLHTKAEIEEIF 138 Query: 147 NMYREVPSITAKAN 160 + KA Sbjct: 139 EWTNNNEFLQYKAQ 152 >gi|329575046|gb|EGG56598.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1467] Length = 212 Score = 61.4 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMD 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + + P L F E+VH+ ++ I ++L + ++F + KA Sbjct: 76 QLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAE 135 >gi|224475873|ref|YP_002633479.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus carnosus subsp. carnosus TM300] gi|222420480|emb|CAL27294.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus carnosus subsp. carnosus TM300] Length = 324 Score = 61.0 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT +E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTPEEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 L ++ A++ + I H + + A E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTKDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 143 GELFNMY-REVPSITAKAN 160 L + + E P + K++ Sbjct: 113 NYLLDTWVLEEPHLKFKSD 131 >gi|306834752|ref|ZP_07467817.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] gi|304569364|gb|EFM44864.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] Length = 337 Score = 61.0 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 34 LLPLKYGWAW-----EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 L P+ + W E + +N W+P +VP+ +D W + + ER + R Sbjct: 24 LRPVNWNRIWDDKDLEVWNRLTSNFWLPEKVPLSNDRNDW---SRMDPAERDLTIRVFTG 80 Query: 89 FASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GEL 145 +++ A + I + E Y AF +AVH+ ++ I ++L E + Sbjct: 81 LTLLDTVQATVGEISQIQDARTEHEEAVYTNI-AFMQAVHARSYSSIFSTLASTEEIEKS 139 Query: 146 FNMYREVPSITAKA 159 + + P + +A Sbjct: 140 YAWAVDNPVLQQRA 153 >gi|29375101|ref|NP_814254.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis V583] gi|227519132|ref|ZP_03949181.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX0104] gi|227553836|ref|ZP_03983885.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis HH22] gi|229547642|ref|ZP_04436367.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX1322] gi|229548395|ref|ZP_04437120.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis ATCC 29200] gi|255971023|ref|ZP_05421609.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|255973536|ref|ZP_05424122.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256617388|ref|ZP_05474234.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256761391|ref|ZP_05501971.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256852443|ref|ZP_05557819.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis T8] gi|256957628|ref|ZP_05561799.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256959663|ref|ZP_05563834.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256963238|ref|ZP_05567409.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|257080134|ref|ZP_05574495.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|257080866|ref|ZP_05575227.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|257083550|ref|ZP_05577911.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|257085823|ref|ZP_05580184.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|257088966|ref|ZP_05583327.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257415187|ref|ZP_05592181.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis AR01/DG] gi|257418242|ref|ZP_05595236.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257420749|ref|ZP_05597739.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis X98] gi|293384855|ref|ZP_06630698.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis R712] gi|293389145|ref|ZP_06633612.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis S613] gi|294780704|ref|ZP_06746065.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis PC1.1] gi|300861776|ref|ZP_07107856.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|307272281|ref|ZP_07553541.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0855] gi|307275556|ref|ZP_07556697.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2134] gi|307282794|ref|ZP_07562994.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0860] gi|307288831|ref|ZP_07568809.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0109] gi|307290616|ref|ZP_07570524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0411] gi|312900212|ref|ZP_07759524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0470] gi|312904832|ref|ZP_07763972.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0635] gi|312908153|ref|ZP_07767131.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 512] gi|312952106|ref|ZP_07770987.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0102] gi|312979089|ref|ZP_07790804.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 516] gi|29342560|gb|AAO80325.1| ribonucleoside-diphosphate reductase 2, beta subunit [Enterococcus faecalis V583] gi|227073409|gb|EEI11372.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX0104] gi|227177089|gb|EEI58061.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis HH22] gi|229306611|gb|EEN72607.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis ATCC 29200] gi|229307134|gb|EEN73121.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX1322] gi|255962041|gb|EET94517.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|255966408|gb|EET97030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256596915|gb|EEU16091.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256682642|gb|EEU22337.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256712297|gb|EEU27329.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis T8] gi|256948124|gb|EEU64756.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256950159|gb|EEU66791.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256953734|gb|EEU70366.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|256988164|gb|EEU75466.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|256988896|gb|EEU76198.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|256991580|gb|EEU78882.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|256993853|gb|EEU81155.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|256997778|gb|EEU84298.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257157015|gb|EEU86975.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ARO1/DG] gi|257160070|gb|EEU90030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257162573|gb|EEU92533.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis X98] gi|291077859|gb|EFE15223.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis R712] gi|291081516|gb|EFE18479.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis S613] gi|294452314|gb|EFG20755.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis PC1.1] gi|295114163|emb|CBL32800.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterococcus sp. 7L76] gi|300848301|gb|EFK76058.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|306498330|gb|EFM67839.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0411] gi|306500300|gb|EFM69639.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0109] gi|306503650|gb|EFM72881.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0860] gi|306507661|gb|EFM76790.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2134] gi|306511170|gb|EFM80180.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0855] gi|310625861|gb|EFQ09144.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 512] gi|310629888|gb|EFQ13171.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0102] gi|310631838|gb|EFQ15121.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0635] gi|311288123|gb|EFQ66679.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 516] gi|311292573|gb|EFQ71129.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0470] gi|315026267|gb|EFT38199.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2137] gi|315028520|gb|EFT40452.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4000] gi|315032246|gb|EFT44178.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0017] gi|315035532|gb|EFT47464.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0027] gi|315143982|gb|EFT87998.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2141] gi|315146930|gb|EFT90946.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4244] gi|315155004|gb|EFT99020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0043] gi|315158779|gb|EFU02796.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0312] gi|315161036|gb|EFU05053.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0645] gi|315166222|gb|EFU10239.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1302] gi|315167729|gb|EFU11746.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1341] gi|315170811|gb|EFU14828.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1342] gi|315173869|gb|EFU17886.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1346] gi|315574921|gb|EFU87112.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0309B] gi|315576500|gb|EFU88691.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0630] gi|315582368|gb|EFU94559.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0309A] gi|327534208|gb|AEA93042.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis OG1RF] Length = 321 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMD 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + + P L F E+VH+ ++ I ++L + ++F + KA Sbjct: 76 QLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAE 135 >gi|323479608|gb|ADX79047.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis 62] Length = 321 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMD 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + + P L F E+VH+ ++ I ++L + ++F + KA Sbjct: 76 QLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAE 135 >gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium avium 104] Length = 311 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 10/115 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ D A W+ LTDDER R F + E V +I Sbjct: 22 KLFAGGNAKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + E R YL + AFEEA H F+ + ++G+ +L + +VPS Sbjct: 78 FMAAMRA-EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGV-TDDLHHFLDDVPS 130 >gi|70606887|ref|YP_255757.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68567535|gb|AAY80464.1| hypothetical protein Saci_1112 [Sulfolobus acidocaldarius DSM 639] Length = 308 Score = 61.0 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 30/154 (19%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P+ + + D A W + L D ++ ++ F + E Sbjct: 25 LFPMK------LYQLGKKLFWDPSTIDLTQDRADW---DKLRDIDKFLMVNVTSKFGAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-------- 143 VA ++ I + E YL + FEEA H F+ + ++G+ E Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFIFEEAKHVEAFRRFLDAVGVKEDLVELTKDV 135 Query: 144 -----ELFNMYREVPSITAKANWALQYTQTLSSP 172 ++F Y E+P KA W L + + Sbjct: 136 SPNYAKIF--YEELP----KAMWNLNRDPSPENQ 163 >gi|329769048|ref|ZP_08260470.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] gi|328839539|gb|EGF89115.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] Length = 322 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 8/154 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP---SITAKANW 161 H + + E +H+ ++ I TSL + + + VP + KAN Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNAELQYKANL 133 Query: 162 ALQYTQTLSSPSFHYWNK---RRRSRILTRSLRF 192 Y L P ++ R S L + + Sbjct: 134 IESYYMKLFKPEVKTYDLYMARVASVFLESYIFY 167 >gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 311 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 10/115 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ D A W+ LTDDER R F + E V +I Sbjct: 22 KLFAGGNAKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + E R YL + AFEEA H F+ + ++G+ +L + +VPS Sbjct: 78 FMAAMRA-EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGV-TDDLHHFLDDVPS 130 >gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.14.25] gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.16.27] gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25] gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27] Length = 308 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 30/154 (19%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK L D E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYI---------ITSLGLDE 142 VA ++ I + E YL + +EE+ H F+ +++ D Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNVMEDLSTYTKDL 135 Query: 143 ----GELFNMYREVPSITAKANWALQYTQTLSSP 172 ++F Y E+P KA W L + + Sbjct: 136 SPNYKKIF--YEELP----KAMWNLSRDPSPENQ 163 >gi|259502687|ref|ZP_05745589.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] gi|259169332|gb|EEW53827.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] Length = 339 Score = 61.0 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 13/165 (7%) Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +NQ + + + + W+ T +P+ +DL W++ L +D + + Sbjct: 9 LNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVSNDLDDWRN---LDEDHQWTVGHV 65 Query: 86 LGFFASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142 G +++ + + A+ + + E Q F E+VH+ ++ I ++L + Sbjct: 66 FGGLTLLDTVQSEAGMTALKEDVKTQHETAVLNNIQ-FMESVHAKSYSTIFSTLNSPDEI 124 Query: 143 GELFNMYREVPSITAKA-NWALQYTQTLSSPSFHYWNKRRRSRIL 186 E+FN + KA A Y P L Sbjct: 125 DEIFNWSDTEEYLQNKATKIANMYLNPAEDPLKKKVANVFLETFL 169 >gi|329729655|gb|EGG66056.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21193] Length = 323 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSETEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + + H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKAN 160 + E P + K++ Sbjct: 113 NYLLDEWVLEEPHLKYKSD 131 >gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 115 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ +++ + E Q F E+VH+ ++ I ++L Sbjct: 76 SLRQNIRTQQETAVLNNIQ-FMESVHAKSYSSIFSTLNTP 114 >gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium abscessus] Length = 313 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 10/118 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P + D A W+S LT+ ER R F + E V +I Sbjct: 22 KLFAGGNAKFWDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEESVTQDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + E R YL + AFEEA H+ F+ + ++G+ E L ++P+ Sbjct: 78 FMSAMRA-EGRLGDEMYLTQFAFEEAKHTQVFRLWLDAVGVSED-LHGYLDDLPAYRE 133 >gi|304398691|ref|ZP_07380563.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB] gi|304353902|gb|EFM18277.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB] Length = 326 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 5/138 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +DL W++ L ++ + R Sbjct: 17 NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGLTLL 73 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 74 DTIQNVIGAPGLMDDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSE 133 Query: 151 EVPSITAKANWALQYTQT 168 E + KA L++ + Sbjct: 134 ENVPLQNKARIILEHYRA 151 >gi|227502192|ref|ZP_03932241.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|227077016|gb|EEI14979.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] Length = 337 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 34 LLPLKYGWAW-----EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 L P+ + W E + +N W+P +VP+ +D W + + ER + R Sbjct: 24 LRPVNWNRIWDDKDLEVWNRLTSNFWLPEKVPLSNDRNDW---SCMDPAERDLTIRVFTG 80 Query: 89 FASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GEL 145 +++ A + I + E Y AF +AVH+ ++ I ++L E + Sbjct: 81 LTLLDTVQATVGEISQIQDARTEHEEAVYTNI-AFMQAVHARSYSSIFSTLASTEEIEKS 139 Query: 146 FNMYREVPSITAKA 159 + + P + +A Sbjct: 140 YAWAVDNPVLQQRA 153 >gi|163791218|ref|ZP_02185634.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7] gi|159873488|gb|EDP67576.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7] Length = 320 Score = 60.6 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 10/133 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK + W T +P+ +DL W L E+ M+ + G Sbjct: 9 NWNNIEDMIDKLTWEKLVEQ---FWTDTRIPVSNDLDDWA---RLPKAEKDMVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELF 146 ++L + + V A+ + + E Y Q F E++H+ ++ I ++L ++ E+F Sbjct: 63 TLLDTLQSQDGVQALKPFIRTQHEEAVYNNIQ-FMESMHAKSYSAIFSTLNSKVEIDEIF 121 Query: 147 NMYREVPSITAKA 159 + KA Sbjct: 122 QWTNTNDLLQIKA 134 >gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis ATCC 367] gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus brevis ATCC 367] Length = 331 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 12/152 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ L D + ++ G ++L + + + Sbjct: 24 WEKLTEQ---FWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGMA 77 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 A+ R + P L F E+VH+ ++ I ++L + E+F + K Sbjct: 78 ALRRDIRTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFQWSDSEEFLQNK-- 135 Query: 161 WALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + L H K+ S L L + Sbjct: 136 --TKRIYDLYHDDEHPLKKKISSVFLETFLFY 165 >gi|326632980|ref|YP_004306569.1| putative aerobic ribonucleoside diphosphate reductase small subunit [Enterobacteria phage SPC35] gi|321272174|gb|ADW80066.1| putative aerobic ribonucleoside diphosphate reductase small subunit [Enterobacteria phage SPC35] Length = 381 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 3/130 (2%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + L + + + + L + W TE+ ++ D W L + + Sbjct: 13 NADLFLGDSLGIADYVRVAHPELERLALLQRSQFWTETEISLEADKKQW---GNLPREIQ 69 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + NL + ++S ++ AI +S PE L + ++ E +HS + II ++ Sbjct: 70 EITLLNLAWQTQTDSFISRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVL 129 Query: 140 LDEGELFNMY 149 D E + Sbjct: 130 TDPAEFIDSV 139 >gi|222150734|ref|YP_002559887.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus caseolyticus JCSC5402] gi|222119856|dbj|BAH17191.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus caseolyticus JCSC5402] Length = 322 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 18/140 (12%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ +E + D+A WK LTDDE+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVESEFKVSKDIASWKE---LTDDEKFTFNH 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H + + E +H+ ++ +I T+L L E Sbjct: 53 ALAGLTGLDTHQADDGMPLIGLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTL-LPSAE 111 Query: 145 ----LFNMYREVPSITAKAN 160 L N P + K+ Sbjct: 112 TNDLLDNWVVNEPHLKFKSE 131 >gi|284174067|ref|ZP_06388036.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus solfataricus 98/2] gi|261600997|gb|ACX90600.1| ribonucleotide reductase [Sulfolobus solfataricus 98/2] Length = 308 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK L D E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKRLFWDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLS--NPECRQYLLRQAFEEAVHSHTF 131 VA ++ I + E YL + +EE+ H F Sbjct: 76 EAVALDLHPLIVTLVKEGKVEEVMYLEQFVYEESKHVEAF 115 >gi|238618784|ref|YP_002913609.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.16.4] gi|238379853|gb|ACR40941.1| ribonucleotide reductase [Sulfolobus islandicus M.16.4] Length = 308 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK L D E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTF 131 VA ++ I + E YL + +EE+ H F Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAF 115 >gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4] Length = 308 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK L D E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTF 131 VA ++ I + E YL + +EE+ H F Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAF 115 >gi|304373441|ref|YP_003856650.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma hyorhinis HUB-1] gi|304309632|gb|ADM22112.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma hyorhinis HUB-1] gi|330723642|gb|AEC46012.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyorhinis MCLD] Length = 344 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 7/145 (4%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + + E + N W+P ++P+ +DL W++ L+ + +I R Sbjct: 27 FNGKMRSVNWNVINDNKDLEVWNRVVQNFWLPEKIPVSNDLETWRT---LSPTWKRVITR 83 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 +++ A +A + + AF VH+ ++ I ++L E E Sbjct: 84 TFTGLTLLDTIQATIGDVAQIPYSQTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSE-E 142 Query: 145 LFNMYR---EVPSITAKANWALQYT 166 + + S+ A+A + Y Sbjct: 143 IEEAHEWVINTKSLQARAQALIPYY 167 >gi|213024643|ref|ZP_03339090.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 119 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAF 122 + +A+ +S PE ++ AF Sbjct: 90 RSPNVALLPLISIPELETWVETWAF 114 >gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1 [Flavobacteriales bacterium ALC-1] gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1 [Flavobacteriales bacterium ALC-1] Length = 429 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 13/177 (7%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R R N L P +Y + + +++W+ +E D+ +K++ LT Sbjct: 97 RDEQARNRKTNIFEKRINLKPYEYPALNDYVDAIRHSYWIHSEFNFTSDIQDFKTR--LT 154 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ IK + + E V + IY + PE A E H + +++ Sbjct: 155 VVEQNAIKNTMLAISQIEVAVKSFWGE-IYNKMPKPEIGAVGATFAESEVRHHDAYSHLL 213 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 LGL+ F ++ P I + ++ + L F Sbjct: 214 EILGLNNE--FKHLKKKPVIMKRVHYL--------ETALKNAKSEDNKEYAESILLF 260 >gi|315149360|gb|EFT93376.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0012] Length = 321 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ + L E+ + G +++ + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRTLSNL---EKTTVGYVFGGLTLLDTVQSESGMD 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + + P L F E+VH+ ++ I ++L + ++F + KA Sbjct: 76 QLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAE 135 >gi|118586508|ref|ZP_01543952.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus oeni ATCC BAA-1163] gi|118433072|gb|EAV39794.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus oeni ATCC BAA-1163] Length = 337 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +D+ W+S L E + G ++L + + + Sbjct: 28 WEKLTEQ---FWLDTRIPISNDMKDWRS---LGLVEHKLYDHVFGGLTMLDTLQSQDGMA 81 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 ++ P R L F E+VH+ ++ I +L E+F+ + + KAN Sbjct: 82 SLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDWASKNEQLQYKAN 141 >gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 313 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ D W+ LT+DER R F + E V +I Sbjct: 22 KLFAGGNAKFWNPADIDFSRDREDWE---RLTEDERSYATRLCAEFIAGEESVTQDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + E R YL + AFEEA H F+ + ++G+ E Sbjct: 78 FMAAMRA-EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITED 120 >gi|15899238|ref|NP_343843.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus solfataricus P2] gi|227829337|ref|YP_002831116.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus L.S.2.15] gi|229578110|ref|YP_002836508.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus Y.G.57.14] gi|229583322|ref|YP_002841721.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus Y.N.15.51] gi|284996696|ref|YP_003418463.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5] gi|13815800|gb|AAK42633.1| Ribonuleotide reductase small subunit, probable (nrdB) [Sulfolobus solfataricus P2] gi|227455784|gb|ACP34471.1| ribonucleotide reductase [Sulfolobus islandicus L.S.2.15] gi|228008824|gb|ACP44586.1| ribonucleotide reductase [Sulfolobus islandicus Y.G.57.14] gi|228014038|gb|ACP49799.1| ribonucleotide reductase [Sulfolobus islandicus Y.N.15.51] gi|284444591|gb|ADB86093.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5] Length = 308 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK L D E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTF 131 VA ++ I + E YL + +EE+ H F Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAF 115 >gi|32491358|ref|NP_871612.1| ribonucleotide-diphosphate reductase subunit beta [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166565|dbj|BAC24755.1| nrdF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 324 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 3/106 (2%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ WK L+ +E+ + R Sbjct: 15 NWNRIEDEKDLEVWNHVTTNFWLPEKIPLSNDIQSWK---MLSKEEKKLTIRIFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++L +I + + F EAVH+ ++ I ++L Sbjct: 72 DTLQNIIGAPSIMMDAKTMHEKAVISNIGFMEAVHARSYSSIFSTL 117 >gi|323473782|gb|ADX84388.1| ribonucleotide reductase [Sulfolobus islandicus REY15A] Length = 308 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK L D E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTF 131 VA ++ I + E YL + +EE+ H F Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAF 115 >gi|227891214|ref|ZP_04009019.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius ATCC 11741] gi|227867088|gb|EEJ74509.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius ATCC 11741] Length = 326 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL+ W+ N +D++ ++ + G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLSDWREFN---EDDKDIVGKVFGGLTLLDTLQSQDGMS 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 ++ + + + F E+VH+ ++ I ++L + E+F+ + KAN Sbjct: 76 SLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFDWTNSNEILQYKAN 135 >gi|126649263|ref|XP_001388304.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa II] gi|126117398|gb|EAZ51498.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa II] Length = 339 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 13/154 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E ++ +L L P+KY W Y + W + +D Sbjct: 4 SKKELLEQQKNESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMED-----K 58 Query: 71 KNGLTDDERLM--IKRNLGFFASSES--LVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + DE+L+ I+ ++ L + + + PE R Y E + Sbjct: 59 TKLMNMDEKLLDYIEMAFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMCMENI 118 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + F + + ++ + + K Sbjct: 119 YKELFMNYVEMIRKNKEK----IERTDEVEKKDE 148 >gi|294155961|ref|YP_003560345.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma crocodyli MP145] gi|291600208|gb|ADE19704.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma crocodyli MP145] Length = 340 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 7/150 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ N + + E + N W+P ++P+ +D+ W++ L+D+ + Sbjct: 19 ERNGFNGKMRAVNWNIINDDKDLEVWNRVTQNFWLPEKIPVSNDIPSWRT---LSDEWQT 75 Query: 81 MIKRNLGFFASSESLVANNI-VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 +I R +++ A + I L++ E + AF AVH+ ++ I ++L Sbjct: 76 LITRTFTGLTMLDTIQATVCDIAQIPNALTDHE-QVIYANFAFMVAVHARSYGTIFSTLC 134 Query: 140 LDE--GELFNMYREVPSITAKANWALQYTQ 167 + E + +A + Y Sbjct: 135 SSDQIEEAHEWVIANEELQERARILIPYYH 164 >gi|331701739|ref|YP_004398698.1| ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL B-30929] gi|329129082|gb|AEB73635.1| Ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL B-30929] Length = 318 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL+ W++ L D + ++ G ++L + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMA 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ + + L F E+VH+ ++ I ++L + E+F+ + KA Sbjct: 76 SLRKDVQTQHETAVLNNIQFMESVHAKSYSSIFSTLNTPDQIDEIFDWSDSEEFLQNKA 134 >gi|90962208|ref|YP_536124.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius UCC118] gi|301300452|ref|ZP_07206652.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821402|gb|ABE00041.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus salivarius UCC118] gi|300214875|gb|ADJ79291.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus salivarius CECT 5713] gi|300851949|gb|EFK79633.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 326 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL+ W+ N +D++ ++ + G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLSDWREFN---EDDKDVVGKVFGGLTLLDTLQSQDGMS 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 ++ + + + F E+VH+ ++ I ++L + E+F+ + KAN Sbjct: 76 SLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFDWTNSNEILQYKAN 135 >gi|213646444|ref|ZP_03376497.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 141 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQY 116 + +A+ +S PE + Sbjct: 90 RSPNVALLPLISIPELETW 108 >gi|260102934|ref|ZP_05753171.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] gi|111610216|gb|ABH11600.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus helveticus CNRZ32] gi|260083260|gb|EEW67380.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] Length = 340 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ A+ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY 163 >gi|328464295|gb|EGF35725.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus helveticus MTCC 5463] Length = 335 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ A+ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY 158 >gi|161508077|ref|YP_001578044.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus helveticus DPC 4571] gi|160349066|gb|ABX27740.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC 4571] Length = 340 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ A+ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY 163 >gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] Length = 316 Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL WK+ L+D E+ ++K+ +G A ++L + + A+ Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWKN---LSDVEKKVVKKAVGGLALLDTLQSEEGLYALK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKAN 160 ++ + + L F E++H+ T+ I+ SL D E+++ P + KA Sbjct: 77 KNARTQKEKAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPKMQFKAE 133 >gi|222478371|gb|ACM62263.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 44 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 100 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 101 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 159 Query: 156 TAKANW 161 AK +W Sbjct: 160 RAKVDW 165 >gi|290766061|gb|ADD60039.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 44 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 100 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 101 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 159 Query: 156 TAKANW 161 AK +W Sbjct: 160 RAKVDW 165 >gi|255018022|ref|ZP_05290148.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL F2-515] Length = 267 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDE 142 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 2 IIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQ 60 Query: 143 GELFNMYREVPSITAKANWALQ-YTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 +F + R P+I + + Y +++ + K + + F Sbjct: 61 NRVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQSSILEGINFY 112 >gi|58700135|ref|ZP_00374651.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58533347|gb|EAL57830.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 225 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 L + E +H + Y++ ++G+ E E + + + ++ K + L++ ++ Sbjct: 1 MMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDAMRKKYEYMLEFEESKKHDKK 59 Query: 175 H 175 H Sbjct: 60 H 60 >gi|114318828|gb|ABI63502.1| UL40 [Human herpesvirus 1] gi|290766139|gb|ADD60116.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 44 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 100 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 101 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 159 Query: 156 TAKANW 161 AK +W Sbjct: 160 RAKVDW 165 >gi|241895721|ref|ZP_04783017.1| ribonucleotide-diphosphate reductase subunit beta [Weissella paramesenteroides ATCC 33313] gi|241871088|gb|EER74839.1| ribonucleotide-diphosphate reductase subunit beta [Weissella paramesenteroides ATCC 33313] Length = 318 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ +T+ E ++ G ++L + + + Sbjct: 22 WEKLTEQ---FWLDTRIPLSNDLDDWRK---MTEQEHYLVGHVFGGLTLLDTLQSQDGMA 75 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 ++ + L F E+VH+ ++ I +L E+F+ + KAN Sbjct: 76 SLKQATRTQHELAVLNNIEFMESVHAKSYSSIFETLHTPAEIDEIFDWTNSNEFLQYKAN 135 >gi|281181724|dbj|BAI58041.1| putative ribonucleoside-diphosphate reductase [Edwardsiella tarda] Length = 169 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D +F Sbjct: 2 RYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSLVF 61 Query: 147 NMYREVPSITAKANWALQYTQTL 169 + I +A Y L Sbjct: 62 DDIVSNEEILKRARDISAYYDDL 84 >gi|9629421|ref|NP_044642.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] gi|132622|sp|P10224|RIR2_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit; Flags: Precursor gi|59540|emb|CAA32303.1| ribonucleotide reductase small subunit [Human herpesvirus 1] Length = 340 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 44 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 100 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 101 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 159 Query: 156 TAKANW 161 AK +W Sbjct: 160 RAKVDW 165 >gi|38234491|ref|NP_940258.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium diphtheriae NCTC 13129] gi|38200754|emb|CAE50457.1| ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium diphtheriae] Length = 341 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 14/111 (12%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA-----N 98 E + N W+P +VP+ +DL W++ +T R ++ R ++L A + Sbjct: 36 EVWQRLTANFWLPEKVPLSNDLPTWRT---MTPVYRELVTRTFTGLTLLDTLQASVGEIS 92 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 I A H AF +AVH+ ++ + +++ E+ + Y Sbjct: 93 QIPDAHTEHEQAVYANI-----AFMQAVHARSYSSVFSTMCS-STEIDDAY 137 >gi|9629310|ref|NP_044510.1| ribonucleotide reductase subunit 2 [Human herpesvirus 2] gi|61231410|sp|P69520|RIR2_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|61231418|sp|P69521|RIR2_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|330200|gb|AAA45807.1| 38K protein [Human herpesvirus 2] gi|1869863|emb|CAB06726.1| ribonucleotide reductase small subunit [Human herpesvirus 2] gi|224613173|dbj|BAH24264.1| ribonucleotide reductase small subunit [Human herpesvirus 2] gi|224613175|dbj|BAH24265.1| ribonucleotide reductase small subunit [Human herpesvirus 2] Length = 337 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 41 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTEN 97 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSI 155 + + + Y + Q E VHS + I L + + Y R + P+I Sbjct: 98 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAI 156 Query: 156 TAKANW 161 K +W Sbjct: 157 RVKVDW 162 >gi|30960705|gb|AAP39142.1| UL40 [Human herpesvirus 1] gi|30960777|gb|AAP39190.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDIIHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|256844583|ref|ZP_05550068.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256613124|gb|EEU18328.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] Length = 276 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 25 GKNMRAINWNDIKDEKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 81 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 82 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 141 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 142 EAHEWVVNNDALQARAKAVIPYY 164 >gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] Length = 317 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%) Query: 32 NQLLPLK-YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + +LP++ Y A + + W P ++ D WK + + ER +I R F Sbjct: 20 HNILPMRLYHKAKKLGV------WDPRDIDFSKDKEDWK---AMNEAERRVILRLCSLFV 70 Query: 91 SSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIIT 136 + E V +++ I E YL FEEA H+ F+ + Sbjct: 71 AGEEAVTLDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLD 118 >gi|238852996|ref|ZP_04643394.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|282851729|ref|ZP_06261093.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] gi|238834391|gb|EEQ26630.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|282557132|gb|EFB62730.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] Length = 335 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY 158 >gi|323467364|gb|ADX71051.1| Ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus helveticus H10] Length = 340 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY 163 >gi|30960708|gb|AAP39144.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSIINRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|59912|emb|CAA24930.1| unnamed protein product [Human herpesvirus 2] Length = 337 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 41 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTEN 97 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSI 155 + + + Y + Q E VHS + I L + + Y R + P+I Sbjct: 98 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAI 156 Query: 156 TAKANW 161 K +W Sbjct: 157 RVKVDW 162 >gi|312984313|ref|ZP_07791656.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] gi|310894278|gb|EFQ43357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] Length = 335 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY 158 >gi|300362830|ref|ZP_07059004.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] gi|300353120|gb|EFJ68994.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] Length = 340 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY 163 >gi|30960492|gb|AAP39000.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|30960429|gb|AAP38958.1| UL40 [Human herpesvirus 1] gi|30960468|gb|AAP38984.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|30960231|gb|AAP38826.1| UL40 [Human herpesvirus 1] gi|30960234|gb|AAP38828.1| UL40 [Human herpesvirus 1] gi|30960237|gb|AAP38830.1| UL40 [Human herpesvirus 1] gi|30960240|gb|AAP38832.1| UL40 [Human herpesvirus 1] gi|30960243|gb|AAP38834.1| UL40 [Human herpesvirus 1] gi|30960246|gb|AAP38836.1| UL40 [Human herpesvirus 1] gi|30960249|gb|AAP38838.1| UL40 [Human herpesvirus 1] gi|30960252|gb|AAP38840.1| UL40 [Human herpesvirus 1] gi|30960255|gb|AAP38842.1| UL40 [Human herpesvirus 1] gi|30960258|gb|AAP38844.1| UL40 [Human herpesvirus 1] gi|30960261|gb|AAP38846.1| UL40 [Human herpesvirus 1] gi|30960264|gb|AAP38848.1| UL40 [Human herpesvirus 1] gi|30960267|gb|AAP38850.1| UL40 [Human herpesvirus 1] gi|30960270|gb|AAP38852.1| UL40 [Human herpesvirus 1] gi|30960273|gb|AAP38854.1| UL40 [Human herpesvirus 1] gi|30960276|gb|AAP38856.1| UL40 [Human herpesvirus 1] gi|30960279|gb|AAP38858.1| UL40 [Human herpesvirus 1] gi|30960282|gb|AAP38860.1| UL40 [Human herpesvirus 1] gi|30960285|gb|AAP38862.1| UL40 [Human herpesvirus 1] gi|30960288|gb|AAP38864.1| UL40 [Human herpesvirus 1] gi|30960291|gb|AAP38866.1| UL40 [Human herpesvirus 1] gi|30960294|gb|AAP38868.1| UL40 [Human herpesvirus 1] gi|30960297|gb|AAP38870.1| UL40 [Human herpesvirus 1] gi|30960300|gb|AAP38872.1| UL40 [Human herpesvirus 1] gi|30960303|gb|AAP38874.1| UL40 [Human herpesvirus 1] gi|30960306|gb|AAP38876.1| UL40 [Human herpesvirus 1] gi|30960309|gb|AAP38878.1| UL40 [Human herpesvirus 1] gi|30960312|gb|AAP38880.1| UL40 [Human herpesvirus 1] gi|30960315|gb|AAP38882.1| UL40 [Human herpesvirus 1] gi|30960318|gb|AAP38884.1| UL40 [Human herpesvirus 1] gi|30960321|gb|AAP38886.1| UL40 [Human herpesvirus 1] gi|30960324|gb|AAP38888.1| UL40 [Human herpesvirus 1] gi|30960327|gb|AAP38890.1| UL40 [Human herpesvirus 1] gi|30960330|gb|AAP38892.1| UL40 [Human herpesvirus 1] gi|30960333|gb|AAP38894.1| UL40 [Human herpesvirus 1] gi|30960336|gb|AAP38896.1| UL40 [Human herpesvirus 1] gi|30960339|gb|AAP38898.1| UL40 [Human herpesvirus 1] gi|30960342|gb|AAP38900.1| UL40 [Human herpesvirus 1] gi|30960345|gb|AAP38902.1| UL40 [Human herpesvirus 1] gi|30960348|gb|AAP38904.1| UL40 [Human herpesvirus 1] gi|30960351|gb|AAP38906.1| UL40 [Human herpesvirus 1] gi|30960354|gb|AAP38908.1| UL40 [Human herpesvirus 1] gi|30960357|gb|AAP38910.1| UL40 [Human herpesvirus 1] gi|30960360|gb|AAP38912.1| UL40 [Human herpesvirus 1] gi|30960363|gb|AAP38914.1| UL40 [Human herpesvirus 1] gi|30960366|gb|AAP38916.1| UL40 [Human herpesvirus 1] gi|30960369|gb|AAP38918.1| UL40 [Human herpesvirus 1] gi|30960372|gb|AAP38920.1| UL40 [Human herpesvirus 1] gi|30960375|gb|AAP38922.1| UL40 [Human herpesvirus 1] gi|30960378|gb|AAP38924.1| UL40 [Human herpesvirus 1] gi|30960381|gb|AAP38926.1| UL40 [Human herpesvirus 1] gi|30960384|gb|AAP38928.1| UL40 [Human herpesvirus 1] gi|30960387|gb|AAP38930.1| UL40 [Human herpesvirus 1] gi|30960390|gb|AAP38932.1| UL40 [Human herpesvirus 1] gi|30960393|gb|AAP38934.1| UL40 [Human herpesvirus 1] gi|30960396|gb|AAP38936.1| UL40 [Human herpesvirus 1] gi|30960399|gb|AAP38938.1| UL40 [Human herpesvirus 1] gi|30960402|gb|AAP38940.1| UL40 [Human herpesvirus 1] gi|30960405|gb|AAP38942.1| UL40 [Human herpesvirus 1] gi|30960408|gb|AAP38944.1| UL40 [Human herpesvirus 1] gi|30960411|gb|AAP38946.1| UL40 [Human herpesvirus 1] gi|30960414|gb|AAP38948.1| UL40 [Human herpesvirus 1] gi|30960417|gb|AAP38950.1| UL40 [Human herpesvirus 1] gi|30960432|gb|AAP38960.1| UL40 [Human herpesvirus 1] gi|30960435|gb|AAP38962.1| UL40 [Human herpesvirus 1] gi|30960438|gb|AAP38964.1| UL40 [Human herpesvirus 1] gi|30960441|gb|AAP38966.1| UL40 [Human herpesvirus 1] gi|30960444|gb|AAP38968.1| UL40 [Human herpesvirus 1] gi|30960447|gb|AAP38970.1| UL40 [Human herpesvirus 1] gi|30960450|gb|AAP38972.1| UL40 [Human herpesvirus 1] gi|30960453|gb|AAP38974.1| UL40 [Human herpesvirus 1] gi|30960456|gb|AAP38976.1| UL40 [Human herpesvirus 1] gi|30960459|gb|AAP38978.1| UL40 [Human herpesvirus 1] gi|30960462|gb|AAP38980.1| UL40 [Human herpesvirus 1] gi|30960471|gb|AAP38986.1| UL40 [Human herpesvirus 1] gi|30960474|gb|AAP38988.1| UL40 [Human herpesvirus 1] gi|30960477|gb|AAP38990.1| UL40 [Human herpesvirus 1] gi|30960480|gb|AAP38992.1| UL40 [Human herpesvirus 1] gi|30960483|gb|AAP38994.1| UL40 [Human herpesvirus 1] gi|30960486|gb|AAP38996.1| UL40 [Human herpesvirus 1] gi|30960489|gb|AAP38998.1| UL40 [Human herpesvirus 1] gi|30960495|gb|AAP39002.1| UL40 [Human herpesvirus 1] gi|30960498|gb|AAP39004.1| UL40 [Human herpesvirus 1] gi|30960501|gb|AAP39006.1| UL40 [Human herpesvirus 1] gi|30960504|gb|AAP39008.1| UL40 [Human herpesvirus 1] gi|30960507|gb|AAP39010.1| UL40 [Human herpesvirus 1] gi|30960510|gb|AAP39012.1| UL40 [Human herpesvirus 1] gi|30960513|gb|AAP39014.1| UL40 [Human herpesvirus 1] gi|30960516|gb|AAP39016.1| UL40 [Human herpesvirus 1] gi|30960519|gb|AAP39018.1| UL40 [Human herpesvirus 1] gi|30960522|gb|AAP39020.1| UL40 [Human herpesvirus 1] gi|30960528|gb|AAP39024.1| UL40 [Human herpesvirus 1] gi|30960531|gb|AAP39026.1| UL40 [Human herpesvirus 1] gi|30960534|gb|AAP39028.1| UL40 [Human herpesvirus 1] gi|30960537|gb|AAP39030.1| UL40 [Human herpesvirus 1] gi|30960540|gb|AAP39032.1| UL40 [Human herpesvirus 1] gi|30960543|gb|AAP39034.1| UL40 [Human herpesvirus 1] gi|30960546|gb|AAP39036.1| UL40 [Human herpesvirus 1] gi|30960549|gb|AAP39038.1| UL40 [Human herpesvirus 1] gi|30960552|gb|AAP39040.1| UL40 [Human herpesvirus 1] gi|30960555|gb|AAP39042.1| UL40 [Human herpesvirus 1] gi|30960558|gb|AAP39044.1| UL40 [Human herpesvirus 1] gi|30960561|gb|AAP39046.1| UL40 [Human herpesvirus 1] gi|30960564|gb|AAP39048.1| UL40 [Human herpesvirus 1] gi|30960567|gb|AAP39050.1| UL40 [Human herpesvirus 1] gi|30960570|gb|AAP39052.1| UL40 [Human herpesvirus 1] gi|30960573|gb|AAP39054.1| UL40 [Human herpesvirus 1] gi|30960576|gb|AAP39056.1| UL40 [Human herpesvirus 1] gi|30960579|gb|AAP39058.1| UL40 [Human herpesvirus 1] gi|30960582|gb|AAP39060.1| UL40 [Human herpesvirus 1] gi|30960585|gb|AAP39062.1| UL40 [Human herpesvirus 1] gi|30960588|gb|AAP39064.1| UL40 [Human herpesvirus 1] gi|30960591|gb|AAP39066.1| UL40 [Human herpesvirus 1] gi|30960594|gb|AAP39068.1| UL40 [Human herpesvirus 1] gi|30960597|gb|AAP39070.1| UL40 [Human herpesvirus 1] gi|30960600|gb|AAP39072.1| UL40 [Human herpesvirus 1] gi|30960603|gb|AAP39074.1| UL40 [Human herpesvirus 1] gi|30960606|gb|AAP39076.1| UL40 [Human herpesvirus 1] gi|30960609|gb|AAP39078.1| UL40 [Human herpesvirus 1] gi|30960612|gb|AAP39080.1| UL40 [Human herpesvirus 1] gi|30960615|gb|AAP39082.1| UL40 [Human herpesvirus 1] gi|30960618|gb|AAP39084.1| UL40 [Human herpesvirus 1] gi|30960621|gb|AAP39086.1| UL40 [Human herpesvirus 1] gi|30960624|gb|AAP39088.1| UL40 [Human herpesvirus 1] gi|30960627|gb|AAP39090.1| UL40 [Human herpesvirus 1] gi|30960630|gb|AAP39092.1| UL40 [Human herpesvirus 1] gi|30960633|gb|AAP39094.1| UL40 [Human herpesvirus 1] gi|30960636|gb|AAP39096.1| UL40 [Human herpesvirus 1] gi|30960639|gb|AAP39098.1| UL40 [Human herpesvirus 1] gi|30960642|gb|AAP39100.1| UL40 [Human herpesvirus 1] gi|30960645|gb|AAP39102.1| UL40 [Human herpesvirus 1] gi|30960648|gb|AAP39104.1| UL40 [Human herpesvirus 1] gi|30960651|gb|AAP39106.1| UL40 [Human herpesvirus 1] gi|30960657|gb|AAP39110.1| UL40 [Human herpesvirus 1] gi|30960660|gb|AAP39112.1| UL40 [Human herpesvirus 1] gi|30960663|gb|AAP39114.1| UL40 [Human herpesvirus 1] gi|30960666|gb|AAP39116.1| UL40 [Human herpesvirus 1] gi|30960669|gb|AAP39118.1| UL40 [Human herpesvirus 1] gi|30960672|gb|AAP39120.1| UL40 [Human herpesvirus 1] gi|30960675|gb|AAP39122.1| UL40 [Human herpesvirus 1] gi|30960678|gb|AAP39124.1| UL40 [Human herpesvirus 1] gi|30960681|gb|AAP39126.1| UL40 [Human herpesvirus 1] gi|30960684|gb|AAP39128.1| UL40 [Human herpesvirus 1] gi|30960687|gb|AAP39130.1| UL40 [Human herpesvirus 1] gi|30960690|gb|AAP39132.1| UL40 [Human herpesvirus 1] gi|30960693|gb|AAP39134.1| UL40 [Human herpesvirus 1] gi|30960696|gb|AAP39136.1| UL40 [Human herpesvirus 1] gi|30960699|gb|AAP39138.1| UL40 [Human herpesvirus 1] gi|30960702|gb|AAP39140.1| UL40 [Human herpesvirus 1] gi|30960711|gb|AAP39146.1| UL40 [Human herpesvirus 1] gi|30960714|gb|AAP39148.1| UL40 [Human herpesvirus 1] gi|30960717|gb|AAP39150.1| UL40 [Human herpesvirus 1] gi|30960720|gb|AAP39152.1| UL40 [Human herpesvirus 1] gi|30960723|gb|AAP39154.1| UL40 [Human herpesvirus 1] gi|30960726|gb|AAP39156.1| UL40 [Human herpesvirus 1] gi|30960732|gb|AAP39160.1| UL40 [Human herpesvirus 1] gi|30960735|gb|AAP39162.1| UL40 [Human herpesvirus 1] gi|30960738|gb|AAP39164.1| UL40 [Human herpesvirus 1] gi|30960741|gb|AAP39166.1| UL40 [Human herpesvirus 1] gi|30960744|gb|AAP39168.1| UL40 [Human herpesvirus 1] gi|30960747|gb|AAP39170.1| UL40 [Human herpesvirus 1] gi|30960750|gb|AAP39172.1| UL40 [Human herpesvirus 1] gi|30960756|gb|AAP39176.1| UL40 [Human herpesvirus 1] gi|30960759|gb|AAP39178.1| UL40 [Human herpesvirus 1] gi|30960762|gb|AAP39180.1| UL40 [Human herpesvirus 1] gi|30960765|gb|AAP39182.1| UL40 [Human herpesvirus 1] gi|30960768|gb|AAP39184.1| UL40 [Human herpesvirus 1] gi|30960771|gb|AAP39186.1| UL40 [Human herpesvirus 1] gi|30960774|gb|AAP39188.1| UL40 [Human herpesvirus 1] gi|30960780|gb|AAP39192.1| UL40 [Human herpesvirus 1] gi|30960783|gb|AAP39194.1| UL40 [Human herpesvirus 1] gi|30960786|gb|AAP39196.1| UL40 [Human herpesvirus 1] gi|30960789|gb|AAP39198.1| UL40 [Human herpesvirus 1] gi|30960792|gb|AAP39200.1| UL40 [Human herpesvirus 1] gi|30960795|gb|AAP39202.1| UL40 [Human herpesvirus 1] gi|30960798|gb|AAP39204.1| UL40 [Human herpesvirus 1] gi|30960801|gb|AAP39206.1| UL40 [Human herpesvirus 1] gi|30960804|gb|AAP39208.1| UL40 [Human herpesvirus 1] gi|30960807|gb|AAP39210.1| UL40 [Human herpesvirus 1] gi|30960810|gb|AAP39212.1| UL40 [Human herpesvirus 1] gi|30960816|gb|AAP39216.1| UL40 [Human herpesvirus 1] gi|30960822|gb|AAP39220.1| UL40 [Human herpesvirus 1] gi|30960825|gb|AAP39222.1| UL40 [Human herpesvirus 1] gi|30960828|gb|AAP39224.1| UL40 [Human herpesvirus 1] gi|30960834|gb|AAP39228.1| UL40 [Human herpesvirus 1] gi|30960840|gb|AAP39232.1| UL40 [Human herpesvirus 1] gi|30960843|gb|AAP39234.1| UL40 [Human herpesvirus 1] gi|30960846|gb|AAP39236.1| UL40 [Human herpesvirus 1] gi|30960849|gb|AAP39238.1| UL40 [Human herpesvirus 1] gi|30960852|gb|AAP39240.1| UL40 [Human herpesvirus 1] gi|30960855|gb|AAP39242.1| UL40 [Human herpesvirus 1] gi|30960858|gb|AAP39244.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|30960831|gb|AAP39226.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|30960753|gb|AAP39174.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|30960813|gb|AAP39214.1| UL40 [Human herpesvirus 1] gi|30960819|gb|AAP39218.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.7 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|300859142|ref|YP_003784125.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300686596|gb|ADK29518.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis FRC41] gi|302206836|gb|ADL11178.1| Ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis C231] gi|302331398|gb|ADL21592.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium pseudotuberculosis 1002] gi|308277088|gb|ADO26987.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium pseudotuberculosis I19] Length = 340 Score = 58.7 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 15/123 (12%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + +N W+P +VP+ +D+ W+ G+ ++ R ++ R +++ A Sbjct: 36 EVWQRLTSNFWLPEKVPLSNDIPTWR---GMGENYRTLVTRTFTGLTLLDTVQAT----- 87 Query: 104 IYRHLSNPECR-----QYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSIT 156 + P+ R AF +AVH+ ++ + ++L + E ++ P + Sbjct: 88 VGEISQIPDARTEHEQAVYTNIAFMQAVHARSYSSVFSTLCSSAEIDEAYSWAVSNPLLQ 147 Query: 157 AKA 159 +A Sbjct: 148 QRA 150 >gi|30960420|gb|AAP38952.1| UL40 [Human herpesvirus 1] gi|30960423|gb|AAP38954.1| UL40 [Human herpesvirus 1] gi|30960426|gb|AAP38956.1| UL40 [Human herpesvirus 1] gi|30960465|gb|AAP38982.1| UL40 [Human herpesvirus 1] gi|30960525|gb|AAP39022.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|30960729|gb|AAP39158.1| UL40 [Human herpesvirus 1] Length = 307 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 317 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 12/106 (11%) Query: 34 LLPLKYGWAWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +LP++ Y A W P ++ D W+ G+ + ER +I R F + Sbjct: 22 ILPMR------LYHKAKKLGTWDPRDIDFTKDKEDWQ---GMNEAERRVILRLCSLFVAG 72 Query: 93 ESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIIT 136 E V +++ I E YL FEEA H+ F+ + Sbjct: 73 EEAVTLDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLD 118 >gi|293380788|ref|ZP_06626833.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] gi|290922652|gb|EFD99609.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] Length = 335 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYY 158 >gi|256849455|ref|ZP_05554887.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus crispatus MV-1A-US] gi|262046124|ref|ZP_06019087.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] gi|256713571|gb|EEU28560.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus crispatus MV-1A-US] gi|260573454|gb|EEX30011.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] Length = 335 Score = 58.3 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYY 158 >gi|67592960|ref|XP_665685.1| ribonucleotide reductase small subunit [Cryptosporidium hominis TU502] gi|54656484|gb|EAL35456.1| ribonucleotide reductase small subunit [Cryptosporidium hominis] Length = 369 Score = 58.3 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 13/152 (8%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +L L P+KY W Y + W + +D Sbjct: 6 KELLEQQKNESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMED-----KTK 60 Query: 73 GLTDDERLM--IKRNLGFFASSES--LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + DERL+ I+ ++ L + + + PE R Y E ++ Sbjct: 61 LMNMDERLLDYIEMVFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMCMENIYK 120 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 F + L ++ + + + K Sbjct: 121 ELFMNYVEMLRKNKEKN----EKTDEVEKKDE 148 >gi|227878534|ref|ZP_03996468.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] gi|227861868|gb|EEJ69453.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] Length = 352 Score = 58.3 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 36 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 92 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 93 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYY 175 >gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora erythraea NRRL 2338] Length = 317 Score = 57.9 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P ++ D W+ GLT++ER + F + E V ++ Sbjct: 28 LFGKGNAKFWDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDL-QPF 83 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGL 140 + E R YL + FEEA H+ F+ + ++GL Sbjct: 84 MAAM-AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGL 122 >gi|257069911|ref|YP_003156166.1| ribonucleotide-diphosphate reductase subunit beta [Brachybacterium faecium DSM 4810] gi|256560729|gb|ACU86576.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] Length = 341 Score = 57.9 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+ L + +R + R +++ A + Sbjct: 43 EVWNRLTANFWLPEKVPLSNDLQAWQ---RLPEQDRTLTMRVFTGLTMLDTVQATVGEIC 99 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 I + E Y AF ++VH+ ++ + ++L E+ + YR Sbjct: 100 QIQDARTEHEEAVYTNI-AFMQSVHARSYSSVFSTLTSTP-EIDSAYR 145 >gi|194246584|ref|YP_002004223.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Phytoplasma mali] gi|193806941|emb|CAP18373.1| Ribonucleoside-diphosphate reductase, beta chain [Candidatus Phytoplasma mali] Length = 348 Score = 57.9 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 15/131 (11%) Query: 28 RSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 D+N + + Y + W P ++ +Q DL WK L+ E+ + Sbjct: 3 NKDINYIGANWNQFEDPYTHFFYEQNLSQFWRPEDISLQGDLQTWKD---LSKFEKNVYS 59 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPE-----CRQYLLRQAFEEAVHSHTFQYIITSL 138 +NL ++ ++ + I E ++ A E AVH+ ++ I +L Sbjct: 60 KNLLILTFLDTYQGDSGMFIISSSFKKEEHQKKATLNFMG--AMENAVHAKSYSNIFMTL 117 Query: 139 GLDEGELFNMY 149 L+ E+ +++ Sbjct: 118 -LNSKEIDDLF 127 >gi|310722361|ref|YP_003969185.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4] gi|306021204|gb|ADM79739.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4] Length = 332 Score = 57.9 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 11/141 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTE--VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 +KY + + W E V +D ++K LT E I L F E Sbjct: 19 IKYPEFAKLADEQMHAFWPWDEPVVD--NDAQDLRTK--LTPGELNGITTVLKLFTIYER 74 Query: 95 LVANNI-VLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREV 152 V + I R PE + A E H+ + + L LD+ + ++E Sbjct: 75 KVGEDYWSARIARTFGRPEINRMATLFAAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKES 134 Query: 153 PSITAKANWALQYTQTLSSPS 173 ++ + + + ++S P Sbjct: 135 EELSRRIQFVGK---SVSDPD 152 >gi|30348565|emb|CAC84357.1| RRsmall [Saimiriine herpesvirus 2] Length = 305 Score = 57.9 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 8/122 (6%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E N W P++VP+Q D+ + L + + K F +E LV NI Sbjct: 18 ELTKETWKNRWFPSQVPLQGDV---CCVDMLNERDLEFYKFLFTFLGMAEKLVNINI-ED 73 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNM---YREVPSITAKA 159 + + + Y Q E +H + I++ L + E+++ ++ K Sbjct: 74 LLSQFDSHDVSHYYAEQMAMENIHGKVYANILSMLFKNNITEVYSYACDIMNDSALQEKL 133 Query: 160 NW 161 W Sbjct: 134 KW 135 >gi|313892092|ref|ZP_07825688.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister microaerophilus UPII 345-E] gi|329121529|ref|ZP_08250153.1| ribonucleotide-diphosphate reductase subunit beta [Dialister micraerophilus DSM 19965] gi|313119484|gb|EFR42680.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister microaerophilus UPII 345-E] gi|327469444|gb|EGF14914.1| ribonucleotide-diphosphate reductase subunit beta [Dialister micraerophilus DSM 19965] Length = 338 Score = 57.9 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +PM +D+ W N L+DD + ++ R +++ A+ + Sbjct: 40 EVWNRVTQNFWLPENIPMSNDIPSW---NTLSDDWKQLVTRTFTGLTLLDTVQASIGDIA 96 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I +++ E + AF VH+ ++ I ++L E E ++ A+A Sbjct: 97 QIKNSVTDHE-QVIYANFAFMVGVHARSYGTIFSTLCSSEQIEEAHEWVVNNDALQARAK 155 Query: 161 WALQYT 166 + Y Sbjct: 156 LLIPYY 161 >gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc gasicomitatum LMG 18811] gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc gasicomitatum LMG 18811] Length = 325 Score = 57.9 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 26 WEKLTQQ---FWLDTRIPISNDLKTWR--GNMSDQERQTMNLVFGGLTTLDTLQSQDGMA 80 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ E Q F E+VH+ ++ I +L +F+ + KA Sbjct: 81 QLKLDVVNQKEEAVLNNIQ-FMESVHAKSYSSIFETLNEKTEIEAIFDWADTNEFLQYKA 139 Query: 160 N 160 N Sbjct: 140 N 140 >gi|256843983|ref|ZP_05549470.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256613888|gb|EEU19090.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] Length = 287 Score = 57.9 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 36 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 92 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 93 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152 Query: 144 ELFNMYREVPSITAKANWALQYT 166 E ++ A+A + Y Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYY 175 >gi|293363858|ref|ZP_06610594.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma alligatoris A21JP2] gi|292552348|gb|EFF41122.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma alligatoris A21JP2] Length = 340 Score = 57.9 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VL 102 E + N W+P ++P+ +D+ W++ L+D+ + +I R +++ A + Sbjct: 42 EVWNRITQNFWLPEKIPVSNDIPSWRT---LSDEWQTLITRTFTGLTMLDTIQATVCDIA 98 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I L++ E + AF AVH+ ++ I ++L E E + + +A Sbjct: 99 QIPNSLTDHE-QVIYANFAFMVAVHARSYGTIFSTLCSSEQIEEAHEWVIDNEDLQERAR 157 Query: 161 WALQYTQT 168 L Y Sbjct: 158 LLLPYYHN 165 >gi|302190764|ref|ZP_07267018.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners AB-1] gi|309804064|ref|ZP_07698145.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|309804878|ref|ZP_07698940.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|309807870|ref|ZP_07701802.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|309809732|ref|ZP_07703586.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|312871305|ref|ZP_07731403.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|312872703|ref|ZP_07732768.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|312873302|ref|ZP_07733357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|312874885|ref|ZP_07734904.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|315654122|ref|ZP_07907038.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners ATCC 55195] gi|325912248|ref|ZP_08174645.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 143-D] gi|325913678|ref|ZP_08176040.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 60-B] gi|329919824|ref|ZP_08276775.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 1401G] gi|308163832|gb|EFO66098.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|308165817|gb|EFO68038.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|308168972|gb|EFO71058.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|308169911|gb|EFO71950.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|311089630|gb|EFQ48055.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|311091182|gb|EFQ49571.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|311091745|gb|EFQ50124.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|311093319|gb|EFQ51665.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|315488818|gb|EFU78464.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners ATCC 55195] gi|325475907|gb|EGC79076.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 143-D] gi|325477037|gb|EGC80187.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 60-B] gi|328937171|gb|EGG33599.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 1401G] Length = 337 Score = 57.9 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 5/141 (3%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 + E + N W+P ++P+ +DL W N L+ D + +I R Sbjct: 23 NMRSINWNKIDDDKDLEVWNRVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFT 79 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GEL 145 +++ A+ +A ++ + AF AVH+ ++ I ++L + E Sbjct: 80 GLTLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEA 139 Query: 146 FNMYREVPSITAKANWALQYT 166 N ++ A+A + Y Sbjct: 140 HNWVINNEALQARAKALIPYY 160 >gi|237784654|ref|YP_002905359.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237757566|gb|ACR16816.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium kroppenstedtii DSM 44385] Length = 350 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 14/122 (11%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L+ E + N W+P +VP+ +D++ W N L DD R + + Sbjct: 25 NWNRLQDPKDLEVWQRLTGNFWLPEKVPLSNDISSW---NSLPDDLRQLTVKIFTGLTLL 81 Query: 93 ESLVANNIVLAIYRHLSNPECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 +++ A + P+ R AF ++VH+ ++ + ++L E+ + Sbjct: 82 DTVQAT-----VGEVSQIPDGRTEHEQAVYTNIAFMQSVHARSYSSVFSTLCSTP-EITD 135 Query: 148 MY 149 Y Sbjct: 136 AY 137 >gi|30960837|gb|AAP39230.1| UL40 [Human herpesvirus 1] Length = 307 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 K +W Sbjct: 127 RTKVDW 132 >gi|259500785|ref|ZP_05743687.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] gi|259167479|gb|EEW51974.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] Length = 339 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 5/141 (3%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 + E + N W+P ++P+ +DL W N L+ D + +I R Sbjct: 25 NMRSINWNKIDDDKDLEVWNRVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFT 81 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GEL 145 +++ A+ +A ++ + AF AVH+ ++ I ++L + E Sbjct: 82 GLTLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEA 141 Query: 146 FNMYREVPSITAKANWALQYT 166 N ++ A+A + Y Sbjct: 142 HNWVINNEALQARAKALIPYY 162 >gi|259046997|ref|ZP_05737398.1| ribonucleoside-diphosphate reductase 2, beta subunit [Granulicatella adiacens ATCC 49175] gi|259036316|gb|EEW37571.1| ribonucleoside-diphosphate reductase 2, beta subunit [Granulicatella adiacens ATCC 49175] Length = 346 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 65/167 (38%), Gaps = 18/167 (10%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEK-----------YLSACNNHWMPTEVPMQDDLAL 67 + KR N N P++Y A + + W+ T +P+ +DL Sbjct: 11 MSTKRYFNEILSQNSTQPVEYYKAIDWNQVEDMIDKLTWEKLTEQFWLDTRIPVSNDLDD 70 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAV 126 W++ L+ E+ ++ + G ++L + + ++ + E + Q F E+V Sbjct: 71 WRT---LSPAEKDVVGKVFGGLTLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQ-FMESV 126 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 H+ ++ I ++L ++F + KA + Q+ + Sbjct: 127 HAKSYSTIFSTLHTKAEIEDIFEWTNNNEYLQFKAKKINEIYQSKDA 173 >gi|294955280|ref|XP_002788462.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] gi|239903931|gb|EER20258.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] Length = 157 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 Y + W E+ + DL W++ LT +E+ IK Sbjct: 1 YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKN 36 >gi|184156148|ref|YP_001844488.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|227515317|ref|ZP_03945366.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|260662379|ref|ZP_05863274.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|183227492|dbj|BAG28008.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|227086331|gb|EEI21643.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|260553070|gb|EEX26013.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|299783625|gb|ADJ41623.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 316 Score = 57.5 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +D W++ LTD E+ +I + +G A ++L + V + Sbjct: 20 WDKATAQFWLDTRVPVSNDRGDWRT---LTDSEKGVINKVVGGLALLDTLQSEEGVNVMR 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAK 158 + + E++H+ ++ I+++L + F+ P + K Sbjct: 77 EDARTRKEVGVINDFLMMESIHAKSYGTILSTLNDQKTIDDTFHWMNNDPRMQYK 131 >gi|121729792|ref|ZP_01682228.1| conserved hypothetical protein [Vibrio cholerae V52] gi|121628467|gb|EAX60957.1| conserved hypothetical protein [Vibrio cholerae V52] Length = 107 Score = 57.5 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + KY + + W P EV + D + Sbjct: 6 FTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 L D E+ + NL + +S+ + +A+ +S PE Sbjct: 64 -GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELE 106 >gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp. JLS] Length = 312 Score = 57.5 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ D A W+S + L ER R F + E V +I Sbjct: 22 KLFAGGNAKFWDPADIDFSKDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + E R YL + AFEEA H+ F+ + ++G+ + Sbjct: 78 FMAAMRA-EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD 120 >gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] Length = 296 Score = 57.5 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 12/107 (11%) Query: 33 QLLPLKYGWAWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 ++LP++ Y A W P E+ D WK+ LT D++ +I + F + Sbjct: 15 EILPMR------LYHKAKKLGIWDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQA 65 Query: 92 SESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIIT 136 E V +++ I S E YL FEEA H+ +F+ + Sbjct: 66 GEEAVTRDLLPLIRVVASEGRLEEEMYLTTFLFEEAKHTESFRLFLD 112 >gi|313884792|ref|ZP_07818546.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619991|gb|EFR31426.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 363 Score = 57.5 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 8/128 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W+ L+ E+ M+ + G +++ + + Sbjct: 23 WEKLTEQ---FWLDTRIPVSNDLDDWR---RLSKAEQDMVGKVFGGLTLLDTVQSEQGAI 76 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + R L F E+VH+ ++ I +L + +F I K++ Sbjct: 77 VLLPDARTSHERSVLSNIHFMESVHAKSYSTIFITLNTNAEIDAIFEWTDTHELIQFKSD 136 Query: 161 WALQYTQT 168 + QT Sbjct: 137 KINRIYQT 144 >gi|30960654|gb|AAP39108.1| UL40 [Human herpesvirus 1] Length = 307 Score = 57.5 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 11 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 67 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E VHS + I L + E P+I Sbjct: 68 MG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 126 Query: 156 TAKANW 161 AK +W Sbjct: 127 RAKVDW 132 >gi|54020059|ref|YP_115670.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyopneumoniae 232] gi|53987232|gb|AAV27433.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma hyopneumoniae 232] Length = 353 Score = 57.5 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 7/145 (4%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + + + E + N W+P ++P+ +DL W++ L+ + ++ R Sbjct: 36 FSGKMRSINWNIINDPKDLEVWTRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTR 92 Query: 85 NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE- 142 +++ A V I L++ E + AF VH+ ++ I ++L E Sbjct: 93 TFTGLTLLDTIQATIGDVAQIKHSLTDHE-QVIYTNFAFMVGVHARSYGSIFSTLCSSEE 151 Query: 143 -GELFNMYREVPSITAKANWALQYT 166 E N + +A + + Sbjct: 152 IEEAHNWVINNEKLQKRARILIPFY 176 >gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] Length = 325 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 26 WEKLTQQ---FWLDTRIPISNDLKNWR--GNMSDQERQTMNLVFGGLTTLDTLQSQDGMA 80 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ E Q F E+VH+ ++ I +L +F+ + KA Sbjct: 81 QLKLDVVNQKEEAVLNNIQ-FMESVHAKSYSSIFETLNEKSEIEAIFDWADTNEFLQYKA 139 Query: 160 N 160 N Sbjct: 140 N 140 >gi|9626016|ref|NP_040262.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2] gi|266917|sp|Q01038|RIR2_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|66391|pir||WMBEP5 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain - saimiriine herpesvirus 1 (strain 11) gi|60381|emb|CAA45683.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2] gi|330989|gb|AAA46136.1| ribonucleotide reductase small subunit [Saimiriine herpesvirus 2] Length = 305 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 8/122 (6%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E N W P++VP+Q D+ + L + + K F +E LV NI Sbjct: 18 ELTKETWKNRWFPSQVPLQGDV---CCVDMLNERDLEFYKFLFTFLGMAEKLVNINI-ED 73 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNM---YREVPSITAKA 159 + + + Y Q E +H + I+ L + E+++ ++ K Sbjct: 74 LLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYACDIMNDSALQEKL 133 Query: 160 NW 161 W Sbjct: 134 RW 135 >gi|284033796|ref|YP_003383727.1| ribonucleotide reductase [Kribbella flavida DSM 17836] gi|283813089|gb|ADB34928.1| ribonucleotide reductase [Kribbella flavida DSM 17836] Length = 319 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 10/113 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P ++ D W+ LT +E+ F + E V ++ Sbjct: 30 LFDKGNRKFWNPRDLDFSQDAEDWQ---RLTPNEKDNAMMLCAQFIAGEEAVTEDL-QPF 85 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 + + E R YL + FEEA H+ F+ + ++G+ E L P Sbjct: 86 LQAM-AAEGRFGDEMYLTQFCFEEAKHTAVFRLWLDAVGVTED-LHRYVENNP 136 >gi|13242410|ref|NP_077433.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 9] gi|11036562|gb|AAG27191.1|AF275348_11 ribonucleotide reductase, small subunit [Cercopithecine herpesvirus 9] Length = 311 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQ-DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 E + +N W+ E +D ++ LT++E K F ++++ LV Sbjct: 18 PDINELRSLSISNRWL--ETDFTLED--DYQYIKCLTEEELSFYKFIFTFLSAADDLVNV 73 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPS 154 NI I + Y L Q E VHS + + + + Sbjct: 74 NIGSLI-TLFKQKDIHHYYLEQECIEVVHSRIYSQIQLMLFEGDIFERLRYTEATIQDAY 132 Query: 155 ITAKANW 161 I AK +W Sbjct: 133 IKAKVDW 139 >gi|71893573|ref|YP_279019.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyopneumoniae J] gi|72080562|ref|YP_287620.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyopneumoniae 7448] Length = 339 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 7/145 (4%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + + + E + N W+P ++P+ +DL W++ L+ + ++ R Sbjct: 22 FSGKMRSINWNIINDPKDLEVWTRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTR 78 Query: 85 NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE- 142 +++ A V I L++ E + AF VH+ ++ I ++L E Sbjct: 79 TFTGLTLLDTIQATIGDVAQIKHSLTDHE-QVIYTNFAFMVGVHARSYGSIFSTLCSSEE 137 Query: 143 -GELFNMYREVPSITAKANWALQYT 166 E N + +A + + Sbjct: 138 IEEAHNWVINNEKLQKRARILIPFY 162 >gi|144227519|gb|AAZ44308.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma hyopneumoniae J] Length = 353 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 7/145 (4%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + + + E + N W+P ++P+ +DL W++ L+ + ++ R Sbjct: 36 FSGKMRSINWNIINDPKDLEVWTRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTR 92 Query: 85 NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE- 142 +++ A V I L++ E + AF VH+ ++ I ++L E Sbjct: 93 TFTGLTLLDTIQATIGDVAQIKHSLTDHE-QVIYTNFAFMVGVHARSYGSIFSTLCSSEE 151 Query: 143 -GELFNMYREVPSITAKANWALQYT 166 E N + +A + + Sbjct: 152 IEEAHNWVINNEKLQKRARILIPFY 176 >gi|255683173|ref|YP_003084381.1| UL40 [Duck enteritis virus] gi|158343199|gb|ABW35292.1| ribonucleotide reductase subunit 2 [Anatid herpesvirus 1] gi|208401182|gb|ACI26683.1| UL40 [Anatid herpesvirus 1] gi|254839988|gb|ACT83534.1| UL40 [Anatid herpesvirus 1] Length = 355 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ +E+ DD A + LT E + F ++++ LV N+ + Sbjct: 74 NRWLESELVFLDDAAD---VDKLTPSELDFYRFIFTFLSAADDLVNCNLG-NLMGLFEEK 129 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----MYREVPSITAKANWALQYT 166 + + Y + Q EAVHS + I L ++ RE SI +K W + Sbjct: 130 DIQHYYVEQESIEAVHSRVYSIIQLILFKNDATARAEYVKKAIRE-TSIRSKVKWISERV 188 Query: 167 QTLSS 171 + Sbjct: 189 EECED 193 >gi|321496611|ref|YP_004207896.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] gi|320332513|gb|ADW24401.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] gi|320332596|gb|ADW24483.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] Length = 307 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 13/161 (8%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + + N W P ++P+ D L++ ++ K F +E LV Sbjct: 13 VDHPGFLALTEETWKNRWFPYQIPLAVDAKD---VTKLSETDKEFYKFLFIFLGLAEKLV 69 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---- 152 NI + + + + + Y Q E +H + I+ + Y Sbjct: 70 NFNI-DELLVGIHSHDAKHYYDEQEAMENIHGKVYANILNLFFEGDKAKMRQYAHFVVGN 128 Query: 153 PSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 P + AK +W + + ++ +L + F+ Sbjct: 129 PGLKAKLSWLHDKVREAT-----TIAEKVLVFLLIEGIFFV 164 >gi|323341317|ref|ZP_08081561.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ruminis ATCC 25644] gi|323091194|gb|EFZ33822.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ruminis ATCC 25644] Length = 317 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 8/121 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL WK + ++E ++++ G ++L + + + Sbjct: 21 VWEKLTEQ---FWLDTRIPLSNDLNDWKK---MKEEEHALVEKVFGGLTLLDTLQSVDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + L F E+VH+ ++ I ++L E+F + + KA Sbjct: 75 SALKKDALTSHEAAVLNNIEFMESVHAKSYSSIFSTLNTPAEIEEIFEWTEKNEYLQYKA 134 Query: 160 N 160 Sbjct: 135 E 135 >gi|9628063|ref|NP_042657.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2] gi|82013696|sp|Q66662|RIR2_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|695233|gb|AAC13848.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2] Length = 305 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W P+++ + D+A +S L + K F A +E LV NI + + Sbjct: 25 QNRWFPSQISLTSDVACLQS---LNPRDLEFYKFLFSFLAMAEKLVNFNIQALVAD-FHS 80 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREV---PSITAKANWALQYT 166 + Y Q E +H + I+ + GE+ RE+ ++ AK +W Sbjct: 81 HDLEHYYTEQEAMENIHGKVYANILNMFFKNNVGEMQKYAREIVGDEALAAKLHWLHGRV 140 Query: 167 QTLSSPSFHYWNKRRRSRILTRSLRFL 193 ++ +L + F+ Sbjct: 141 SEA-----KTRAEKVLVFLLIEGIFFI 162 >gi|284931055|gb|ADC30993.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. F] Length = 339 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 9/140 (6%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + N W+P ++P+ +DL W N LT + + ++ R Sbjct: 30 NWNVINDPKDLEVWTRVTQNFWLPEKIPVSNDLKSW---NELTPEWKQLVTRTFTGLTLL 86 Query: 93 ESLV-ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ + I L++ E + +F VH+ ++ I ++L E+ + Sbjct: 87 DTIQCTLGDIAQIPNSLTDHE-QFVYANFSFMVGVHARSYGTIFSTLNT-SDEIEEAHEW 144 Query: 151 --EVPSITAKANWALQYTQT 168 + A+A + + Y + Sbjct: 145 VINNEKLQARAKFLVPYYTS 164 >gi|31544249|ref|NP_852827.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. R(low)] gi|26398734|sp|Q9XC20|RIR2_MYCGA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|5565932|gb|AAD45275.1|AF152114_3 ribonucleoside-diphosphate reductase beta chain [Mycoplasma gallisepticum] gi|31541093|gb|AAP56395.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. R(low)] gi|284930288|gb|ADC30227.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. R(high)] Length = 339 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 9/140 (6%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + N W+P ++P+ +DL W N LT + + ++ R Sbjct: 30 NWNVINDPKDLEVWTRVTQNFWLPEKIPVSNDLKSW---NELTPEWKQLVTRTFTGLTLL 86 Query: 93 ESLV-ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ + I L++ E + +F VH+ ++ I ++L E+ + Sbjct: 87 DTIQCTLGDIAQIPNSLTDHE-QFVYANFSFMVGVHARSYGTIFSTLNT-SDEIEEAHEW 144 Query: 151 --EVPSITAKANWALQYTQT 168 + A+A + + Y + Sbjct: 145 VINNEKLQARAKFLVPYYTS 164 >gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain) [Mycobacterium sp. MCS] gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp. KMS] Length = 312 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ D A W+S + L ER R F + E V +I Sbjct: 22 KLFAGGNAKFWDPADIDFSRDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + E R YL + AFEEA H+ F+ + ++G+ + Sbjct: 78 FMAAMRA-EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD 120 >gi|326692188|ref|ZP_08229193.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc argentinum KCTC 3773] Length = 325 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IV 101 WEK W+ T +P+ +DL W+ ++ E+ + G + ++L + + + Sbjct: 27 WEKLTQQ---FWLDTRIPISNDLRHWR--GNMSPQEQKTMNLVFGGLTTLDTLQSQDGLA 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + L+ E Q F E++H+ ++ I +L +F+ + KA Sbjct: 82 QLKFDSLNQKEEAVLNNIQ-FMESIHAKSYSSIFETLNEKSEIEAIFDWADNNEFLQYKA 140 Query: 160 N 160 N Sbjct: 141 N 141 >gi|12642668|gb|AAK00340.1| ribonucleotide reductase small subunit [Bovine herpesvirus 2] Length = 313 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ +E+ D + L+ E + F ++++ LV Sbjct: 17 PDINRLRSLSILNRWLESELVFAGDEED---VDRLSPGELDFYRFLFTFLSAADDLVTEE 73 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSI 155 + + + Y + Q E VHS + I L ++ +Y R V P+I Sbjct: 74 LG-RLSGLFYQKDILHYYVEQECIEVVHSRVYSIIQMVLFKNDDAARRIYVARTVGHPAI 132 Query: 156 TAKANW 161 AK +W Sbjct: 133 HAKVDW 138 >gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1] Length = 312 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 9/103 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P ++ D A W+S LTD ER R F + E V +I Sbjct: 23 LFAGGNAKFWDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDI-QPF 78 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 79 MAAMRA-EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED 120 >gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] Length = 324 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 26 WEKLTQQ---FWLDTRIPISNDLRTWR--GNMSDQERQTLNLVFGGLTTLDTLQSQDGMA 80 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ E Q F E+VH+ ++ I +L +F+ + KA Sbjct: 81 SLKLDVVNQKEEAVLNNIQ-FMESVHAKSYSSIFETLNEKSEIEAIFDWADSNEFLQYKA 139 Query: 160 N 160 N Sbjct: 140 N 140 >gi|9625893|ref|NP_040141.1| ribonucleotide reductase subunit 2 [Human herpesvirus 3] gi|132630|sp|P09247|RIR2_VZVD RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase small subunit gi|259645448|sp|Q4JQV7|RIR2_VZVO RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase small subunit gi|60007|emb|CAA27901.1| ribonucleotide reductase (small subunit) [Human herpesvirus 3 strain Dumas] gi|46981429|gb|AAT07700.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|46981500|gb|AAT07776.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|66865986|gb|AAY57634.1| ORF18 [Human herpesvirus 3] gi|66866058|gb|AAY57705.1| ORF18 [Human herpesvirus 3] gi|83721826|emb|CAI44861.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|90992817|gb|ABE03036.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|91980319|gb|ABE67126.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481816|gb|ABF21518.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481890|gb|ABF21591.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481964|gb|ABF21664.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482038|gb|ABF21737.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482112|gb|ABF21810.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482186|gb|ABF21883.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482260|gb|ABF21956.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482334|gb|ABF22029.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482408|gb|ABF22102.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482482|gb|ABF22175.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482556|gb|ABF22248.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|111184743|gb|ABH08451.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|157965778|gb|ABW06924.1| ribonucleotide reductase small subunit [Human herpesvirus 3] Length = 306 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 14/129 (10%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDL---ALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + +N W ++ D ++ + LT+DE + + F ++++ LV Sbjct: 16 PDINNLRALSISNRW------LESDFIIEDDYQYLDCLTEDELIFYRFIFTFLSAADDLV 69 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI-ITSLGLDEG---ELFNMYREV 152 N+ + + S + Y + Q E VH+ + I + DE + N+ Sbjct: 70 NVNLGS-LTQLFSQKDIHHYYIEQECIEVVHARVYSQIQLMLFRGDESLRVQYVNVTINN 128 Query: 153 PSITAKANW 161 PSI K W Sbjct: 129 PSIQQKVQW 137 >gi|323342959|ref|ZP_08083190.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463023|gb|EFY08218.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix rhusiopathiae ATCC 19414] Length = 358 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y + W P ++ +Q DL LW S L++D +L RNL ++ + + + Sbjct: 31 FYEQNLSQFWRPEDISLQPDLNLWAS---LSEDVKLAYGRNLLVLTFLDTYQGDIGMPVV 87 Query: 105 YRHL--SNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEGELFNMYR 150 R + + + L A E VH+ ++ I + +E E+ ++YR Sbjct: 88 SRSIDHKYHQRKSVLNFMAAMENAVHAKSYSNIFMTYMKNE-EIDDLYR 135 >gi|9631250|ref|NP_048031.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3] gi|4019286|gb|AAC95584.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3] Length = 305 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E N W P++VP+Q D+ + L + + K F +E LV NI Sbjct: 18 ELTKETWKNRWFPSQVPLQGDV---CCVDLLNERDIEFYKFLFTFLGMAEKLVNINI-ED 73 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREVP---SITAKA 159 + + + Y Q E +H + I+ L + E+++ ++ ++ K Sbjct: 74 LLGQFESHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYAHDIMNDCALQEKI 133 Query: 160 NW 161 W Sbjct: 134 RW 135 >gi|1172944|sp|P06474|RIR2_HHV1K RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|807641|gb|AAA66436.1| unknown protein [Human herpesvirus 1] Length = 340 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE+ + + + L++ E + F ++++ LV N Sbjct: 44 PDINHLRSLSILNRWLETELVF---VGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTEN 100 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSI 155 + + + Y + Q E HS + I L + E P+I Sbjct: 101 LG-GLSGLFEQKDILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVAGTINHPAI 159 Query: 156 TAKANW 161 AK +W Sbjct: 160 RAKVDW 165 >gi|229823057|ref|ZP_04449126.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271] gi|229787496|gb|EEP23610.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271] Length = 336 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WEK W+ T +P+ +DL W++ L+ ER ++ + G ++L + Sbjct: 39 WEKLTEQ---FWLDTRIPVSNDLDDWRT---LSMAERDVVAKAFGGLTLLDTLQSEEGAA 92 Query: 103 AIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + + + E + Q F E+VH+ ++ I ++L E+F + KA Sbjct: 93 LMKDFVRTQHEEAVWNNIQ-FMESVHAKSYSTIFSTLNTKAEIEEIFEWTNTNEQLQYKA 151 Query: 160 N 160 Sbjct: 152 K 152 >gi|270614678|ref|ZP_06221723.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae HK1212] gi|270317993|gb|EFA29282.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae HK1212] Length = 103 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 + E+ + NL + +S+ + +A+ +S P Sbjct: 67 PEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIP 103 >gi|144575330|gb|AAZ53597.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma hyopneumoniae 7448] Length = 314 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P ++P+ +DL W++ L+ + ++ R +++ A V Sbjct: 16 EVWTRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGLTLLDTIQATIGDVA 72 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I L++ E + AF VH+ ++ I ++L E E N + +A Sbjct: 73 QIKHSLTDHE-QVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHNWVINNEKLQKRAR 131 Query: 161 WALQYT 166 + + Sbjct: 132 ILIPFY 137 >gi|227529511|ref|ZP_03959560.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC 49540] gi|227350596|gb|EEJ40887.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC 49540] Length = 339 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 11/161 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L D + + G Sbjct: 16 NWNEVSDMIDKATWEKLTEQ---FWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +++ + + A+ + + + E Q F E+VH+ ++ I ++L E E+F Sbjct: 70 TLLDTVQSEAGLTALKQDVKTQHETAVLNNIQ-FMESVHAKSYSTIFSTLNTPEEINEIF 128 Query: 147 NMYREVPSITAKA-NWALQYTQTLSSPSFHYWNKRRRSRIL 186 + + KA A Y P L Sbjct: 129 DWSDSEEYLQNKAVQIANIYRNPEEDPLKKKVANVFLETFL 169 >gi|22550280|gb|AAN01603.1| ribonucleotide reductase small subunit [Human herpesvirus 2 strain G] Length = 342 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 5/126 (3%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ TE + + + L++ E + F ++++ LV N Sbjct: 41 PDINHLRSLSILNRWLETETELVFVGDEEEDVSKLSEGELGFYRFLFAFLSAADDLVTEN 100 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSI 155 + + + Y + Q E VHS + I L + + Y R + P+I Sbjct: 101 LG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTITHPAI 159 Query: 156 TAKANW 161 K +W Sbjct: 160 RVKVDW 165 >gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 314 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 10/119 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ + W + LTD ER R F + E V +I Sbjct: 22 KLFAGGNAKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEEAVTEDI-QP 77 Query: 104 IYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 + E R YL + AFEEA H+ F+ + S+G+ G+L ++PS Sbjct: 78 FMAAMRA-EGRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-TGDLHGYLDDLPSYRQM 134 >gi|15829010|ref|NP_326370.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma pulmonis UAB CTIP] gi|14089954|emb|CAC13712.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (RIBONUCLEOTIDE REDUCTASE) [Mycoplasma pulmonis] Length = 341 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 15/149 (10%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + + E + C N W+P ++P+ +DL W+S L + +I R Sbjct: 24 FRGKMRSVNWNKIDDEKDLEVWNRVCQNFWLPEKIPVSNDLETWRS---LDPIWQKVITR 80 Query: 85 NLGFFASSESLVAN-----NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 +++ A + ++ H + AF A+H+ ++ I ++L Sbjct: 81 TFTGLTLLDTIQATIGDIAQLPHSLTDH-----EQVIYTNFAFMVAIHARSYGTIFSTLC 135 Query: 140 LDE--GELFNMYREVPSITAKANWALQYT 166 E E S+ +A + + Sbjct: 136 STEQINEAHEWVINTKSLQDRAKILIPFY 164 >gi|240047145|ref|YP_002960533.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma conjunctivae HRC/581] gi|239984717|emb|CAT04689.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma conjunctivae] Length = 344 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + + E + N W+P ++P+ +DL W+S L+ + +I R Sbjct: 27 FQGKMRSVNWNVINDPKDLEVWNRVVQNFWIPEKIPVSNDLDTWRS---LSPVWQRLITR 83 Query: 85 NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +++ A V I L++ E + AF VH+ ++ I ++L E Sbjct: 84 TFTGLTLLDTIQATIGDVAQIQHSLTDHE-QVIYANFAFMVGVHARSYGTIFSTLCTSE- 141 Query: 144 ELFNMYR 150 E+ + Sbjct: 142 EIEEAHE 148 >gi|327440682|dbj|BAK17047.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris StLB046] Length = 294 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 6/104 (5%) Query: 43 WEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 + Y A W P ++ D WK L ++++L + F E V +I+ Sbjct: 18 YNLYQKAKKFGIWNPVDIDFTQDKEDWKK---LNEEQQLEVLTQFAQFIGGEEAVTQDIL 74 Query: 102 LAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 I E YL FEEA H+ F + +G+ + Sbjct: 75 PMIMAVSKKGWFEEESYLTTFLFEEAKHAEFFSLFLEEIGVKDD 118 >gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P + D A W+ L+D ER+ + R F + E V +I Sbjct: 23 LFAGGIAKLWDPANIDFSRDSADWE---ALSDRERVYVTRLCAGFIAGEEAVTQDI-QPF 78 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLG 139 + E R YL + AFEEA H+ F+ + ++G Sbjct: 79 MAAMRA-EGRLGDEMYLTQFAFEEAKHTQAFRLWLDAVG 116 >gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 70 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 27/49 (55%), Positives = 33/49 (67%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49 A S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ Sbjct: 22 FAVAPNASAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAG 70 >gi|109290088|ref|YP_656337.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25] gi|104345761|gb|ABF72661.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25] Length = 332 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 11/141 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTE--VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 +KY + + W E V +D+ ++K LT E I L F E Sbjct: 19 IKYPEFGKLADEQMHAFWPWDEPVVD--NDIQDLRTK--LTPGELNGITTVLKLFTIYER 74 Query: 95 LVANNI-VLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREV 152 V + I PE + + E H+ + + L LD+ + ++E Sbjct: 75 KVGEDYWSGRIAHTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKES 134 Query: 153 PSITAKANWALQYTQTLSSPS 173 ++ + + + +++ P Sbjct: 135 EELSRRIQFVGK---SVNDPD 152 >gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus] Length = 192 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 15/66 (22%) Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 +I + D E LFN +P + KA+WALQ+ S R Sbjct: 1 SLLINTYIRDLKERDYLFNAIETLPYVKRKADWALQWI------------SDTNSTFAER 48 Query: 189 SLRFLC 194 + F Sbjct: 49 LVAFAA 54 >gi|295397108|ref|ZP_06807219.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294974650|gb|EFG50366.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 338 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + + W+ T +P+ +D W+ LT +ER ++ + + ++L + + Sbjct: 42 WEKLTSQFWLDTRIPVSNDRDDWR---ILTKEERDVVNKAFAGLTALDTLQSEEGANVMR 98 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 + L F E+VH+ ++ I SL E+F+ + KA Sbjct: 99 DAVRTQHEEAVLNNILFMESVHAKSYSTIFISLNTTREIDEIFDWANNNEYLQYKA 154 >gi|326783253|ref|YP_004323801.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] gi|310005200|gb|ADO99589.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] Length = 296 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%) Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 +S+ +A + S PE +L F E +HS ++ YII ++ D E+F+ E Sbjct: 2 LDSVQGRGPGMAFIPYCSLPELEASMLVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTILE 61 Query: 152 VPSITAKA 159 I +A Sbjct: 62 DEKILDRA 69 >gi|256848140|ref|ZP_05553584.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715200|gb|EEU30177.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus coleohominis 101-4-CHN] Length = 333 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L D + + G Sbjct: 10 NWNEVSDMIDKATWEKLTEQ---FWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELF 146 ++L + + A+ + + E Q F E+VH+ ++ I ++L + E+F Sbjct: 64 TLLDTLQSQAGLTALKEDVKTQHETAVLNNIQ-FMESVHAKSYSTIFSTLNTPDEIREIF 122 Query: 147 NMYREVPSITAKA 159 + + KA Sbjct: 123 DWSDSEEYLQNKA 135 >gi|219681363|ref|YP_002456127.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa21-4] gi|327198492|ref|YP_004327080.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa104] gi|199580630|gb|ACH89017.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa21-4] gi|311875188|emb|CBX44448.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa104] Length = 365 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y ++ Y W EV +++ +++ E + NL + ++S V+ Sbjct: 36 YPELFDLYKQQKAQDWSEDEVNLENSRIDFQTAAK---SEIEVCIENLLWQWEADSRVSR 92 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 NI+ + +SN E + +Q E +H+ T+ I+ D E+ + ++ + Sbjct: 93 NIITLLAPFISNNEFAAMVTKQTEIENLHALTYSEIVRQCISDPTEMIKRVMDNQAVLDR 152 >gi|85057306|ref|YP_456222.1| ribonucleotide-diphosphate reductase subunit beta [Aster yellows witches'-broom phytoplasma AYWB] gi|84789411|gb|ABC65143.1| ribonucleoside-diphosphate reductase beta chain [Aster yellows witches'-broom phytoplasma AYWB] Length = 350 Score = 55.6 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 14/142 (9%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY Y + W P ++ +Q DLA W + LT +E+ RNL ++ Sbjct: 27 KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTIEEKTAYSRNLLVLTFLDTYQG 81 Query: 98 NNIVLAIYRHLSNPE-----CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 + + I R L E ++ A E AVH+ ++ I S ++ +LF Sbjct: 82 DLGMPIIARSLEEHEHQKKATLNFMG--AMENAVHAKSYSNIFMSYLTNKEINQLFLWGN 139 Query: 151 EVPSITAKANWALQYTQTLSSP 172 + S+ ++ + L Sbjct: 140 QQKSLQTMMQVIVKVYEALEDQ 161 >gi|39938541|ref|NP_950307.1| ribonucleotide-diphosphate reductase subunit beta [Onion yellows phytoplasma OY-M] gi|39721650|dbj|BAD04140.1| ribonucleotide reductase beta subunit [Onion yellows phytoplasma OY-M] Length = 350 Score = 55.6 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 14/142 (9%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY Y + W P ++ +Q DLA W + LT +E+ RNL ++ Sbjct: 27 KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTLEEKTAYSRNLLVLTFLDTYQG 81 Query: 98 NNIVLAIYRHLSNPE-----CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 + + I R L E ++ A E AVH+ ++ I S ++ +LF Sbjct: 82 DLGMPVIARSLEEHEHQKKATLNFMG--AMENAVHAKSYSNIFMSYLTNKEINQLFLWGN 139 Query: 151 EVPSITAKANWALQYTQTLSSP 172 + S+ ++ + L Sbjct: 140 QQTSLQTMMQVIVKVYEALEDQ 161 >gi|37651592|ref|NP_932466.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t] gi|66391913|ref|YP_238838.1| hypothetical protein PHG31p109 [Aeromonas phage 31] gi|34732892|gb|AAQ81430.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t] gi|62114750|gb|AAX63598.1| hypothetical protein PHG31p109 [Aeromonas phage 31] Length = 323 Score = 55.2 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 11/141 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTE--VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 ++Y + W E V +D ++K LT E I L F E Sbjct: 10 IRYPEFAALADEQMHAFWPWDEPVVD--NDAQDLRTK--LTPGELNGITTVLKLFTIYER 65 Query: 95 LVANNI-VLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREV 152 V + I R PE + + E H+ + + L LD+ + ++E Sbjct: 66 KVGEDYWTGRIARTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKES 125 Query: 153 PSITAKANWALQYTQTLSSPS 173 ++ + + + ++S P Sbjct: 126 EELSRRIQFVGK---SVSDPD 143 >gi|312140626|ref|YP_004007962.1| ribonucleoside-diphosphate reductase nrdb [Rhodococcus equi 103S] gi|325675746|ref|ZP_08155430.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|311889965|emb|CBH49283.1| ribonucleoside-diphosphate reductase NrdB [Rhodococcus equi 103S] gi|325553717|gb|EGD23395.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 323 Score = 55.2 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 9/101 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 ++ W P ++ D W S LT +E+ F + E V +I Sbjct: 28 LFVKGNAKFWNPADIDFTQDAEDWAS---LTSEEKRSSTYLCTQFIAGEEAVTEDI-QPF 83 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLD 141 + + E R YL + FEEA H F+ + ++GLD Sbjct: 84 MKAM-AAEGRFNDEMYLTQFCFEEAKHVQVFRRWMDAVGLD 123 >gi|209523560|ref|ZP_03272114.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] gi|209495965|gb|EDZ96266.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] Length = 107 Score = 55.2 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPS 173 + Q +E +H+ ++QY+I ++ E +++ +R + + + Y + + P+ Sbjct: 1 MAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFWRTDKVLRDRCEFIAGLYQEYVDDPT 60 Query: 174 FHYWNKRRRSRILTRSLRFLC 194 + + L + F Sbjct: 61 PENYFVSLMADYLLEGMYFYN 81 >gi|197294249|ref|YP_001798790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Phytoplasma australiense] gi|171853576|emb|CAM11447.1| Ribonucleotide reductase, beta subunit [Candidatus Phytoplasma australiense] Length = 344 Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y + W P ++ +Q DLA W N L+D+E+ RNL ++ + + I Sbjct: 25 FYEQNLSQFWRPEDISLQGDLAAW---NHLSDEEKTTYTRNLLVLTFLDTYQGDLGIPVI 81 Query: 105 YRHLSNP--ECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG 143 + + + L E VH+ ++ I TS +E Sbjct: 82 ANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNED 123 >gi|301331892|gb|ADK70922.1| U27.5 [Elephant endotheliotropic herpesvirus 2] Length = 301 Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 8/131 (6%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + Y + N W+ ++ L +K L + + K F +E LV N+ Sbjct: 12 DFRQLYRTVTENRWLEGQISF---LNDYKHILLLDEKTKEYYKFIFCFLGMAEHLVNFNL 68 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS-LGLDEGELF---NMYREVPSIT 156 I R L +P+ Y + Q E VH+ T++ I+ DE + + Y + P++ Sbjct: 69 FDMIER-LEDPDVIHYYIEQMSIECVHARTYRRILNIFYDNDEKAIMCAADFYLKDPALL 127 Query: 157 AKANWALQYTQ 167 K ++ + + Sbjct: 128 KKISFLEKTIR 138 >gi|330718304|ref|ZP_08312904.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc fallax KCTC 3537] Length = 326 Score = 54.9 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IV 101 WEK W+ T VP+ +DL W+ + +E+ ++ G + ++L + + + Sbjct: 26 WEKLTQQ---FWLDTRVPISNDLRNWRDT---SAEEKKVLNLVFGGLTTLDTLQSQDGMA 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAK 158 ++ E Q F E+VH+ ++ I +L D+ E+ F + K Sbjct: 80 ELKKDAVNQKEEAVLNNIQ-FMESVHAKSYSSIFETLN-DKAEIEAVFEWADNDEYLQYK 137 Query: 159 AN 160 A Sbjct: 138 AQ 139 >gi|254362523|ref|ZP_04978626.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica PHL213] gi|153094123|gb|EDN75022.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica PHL213] Length = 293 Score = 54.5 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 7/116 (6%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA-NNIVLAIYRHLSNPECRQ 115 TE D+ +++ + D ER ++ R + A S+ V +Y + PE Sbjct: 3 TEFNFTGDIQDYRT--TINDHERHVLTRAM--LAISQVEVNVKRFWGELYCYFPKPEMDD 58 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 A E H + +++ LGL E+F+ E+ + + + + + + Sbjct: 59 VGGTFAESEVRHKDAYSFLLEKLGL--NEMFSQIHEIEPLMNRIRYMESFMKDKDA 112 >gi|12045084|ref|NP_072895.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma genitalium G37] gi|255660230|ref|ZP_05405639.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma genitalium G37] gi|1350602|sp|P47471|RIR2_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|3844832|gb|AAC71450.1| ribonucleoside-diphosphate reductase, beta chain [Mycoplasma genitalium G37] gi|166078981|gb|ABY79599.1| ribonucleoside-diphosphate reductase, beta chain [synthetic Mycoplasma genitalium JCVI-1.0] Length = 340 Score = 54.5 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 9/127 (7%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P ++P+ +D+ WK L+ D + +I + +++ A + Sbjct: 42 EVWNRIVQNFWLPEKIPVSNDIPSWKK---LSKDWQDLITKTFTGLTLLDTIQATIGDIC 98 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKA 159 I L++ E + AF VH+ ++ I ++L E ++ + S+ +A Sbjct: 99 QIDHALTDHE-QVIYANFAFMVGVHARSYGTIFSTLCTSE-QINAAHEWVVNTESLQKRA 156 Query: 160 NWALQYT 166 + Y Sbjct: 157 KALIPYY 163 >gi|13508061|ref|NP_110010.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma pneumoniae M129] gi|2500211|sp|P75461|RIR2_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1674208|gb|AAB96162.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma pneumoniae M129] gi|301633274|gb|ADK86828.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma pneumoniae FH] Length = 339 Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +D+ WK L+ + + +I + +++ A + Sbjct: 41 EVWNRITQNFWLPEKIPVSNDIPSWKQ---LSKEWQDLITKTFTGLTLLDTIQATIGDIK 97 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161 + + AF VH+ ++ I ++L E E + S+ +A Sbjct: 98 QIDYALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKA 157 Query: 162 ALQYT 166 + Y Sbjct: 158 LIPYY 162 >gi|116617385|ref|YP_817756.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096232|gb|ABJ61383.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 325 Score = 54.5 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 4/140 (2%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 + N ++ + W+ T +P+ +DL W+ +++ ER + Sbjct: 3 HINNGSYTAINWNNIEDELDKATWEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTM 60 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140 G + ++L + + + + +N + L F E+VH+ ++ I +L + Sbjct: 61 NLVFGGLTTLDTLQSQDGMAQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKV 120 Query: 141 DEGELFNMYREVPSITAKAN 160 + ++F + KAN Sbjct: 121 EIEKIFEWADSNEFLQYKAN 140 >gi|227431268|ref|ZP_03913322.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353030|gb|EEJ43202.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 327 Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 4/140 (2%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 + N ++ + W+ T +P+ +DL W+ +++ ER + Sbjct: 5 HINNGSYTAINWNNIEDELDKATWEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTM 62 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140 G + ++L + + + + +N + L F E+VH+ ++ I +L + Sbjct: 63 NLVFGGLTTLDTLQSQDGMAQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKV 122 Query: 141 DEGELFNMYREVPSITAKAN 160 + ++F + KAN Sbjct: 123 EIEKIFEWADSNEFLQYKAN 142 >gi|226365685|ref|YP_002783468.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus opacus B4] gi|226244175|dbj|BAH54523.1| hypothetical protein [Rhodococcus opacus B4] Length = 324 Score = 54.1 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 PL+ + W PT++ D W+ GL +++ + F + E Sbjct: 30 FPLR------LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEE 80 Query: 95 LVANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 V +I + + E R YL + FEEA H+ F+ + ++GL Sbjct: 81 AVTEDI-QPFMKAM-AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRD 131 >gi|111023180|ref|YP_706152.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus jostii RHA1] gi|123045538|sp|Q0S392|RIR2H_RHOSR RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|110822710|gb|ABG97994.1| probable ribonucleoside-diphosphate reductase [Rhodococcus jostii RHA1] Length = 324 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 PL+ + W PT++ D W+ GL +++ + F + E Sbjct: 30 FPLR------LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEE 80 Query: 95 LVANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 V +I + + E R YL + FEEA H+ F+ + ++GL Sbjct: 81 AVTEDI-QPFMKAM-AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRD 131 >gi|313902757|ref|ZP_07836155.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965] gi|313467054|gb|EFR62570.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965] Length = 349 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 14/102 (13%) Query: 32 NQLLPLKYGWAWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + L P++ Y A W P + + D W N L D ++ + R + FA Sbjct: 40 HDLPPMR------LYHKAKKFGTWDPRAIDLSQDREDW---NLLNDAQKDALLRLVSLFA 90 Query: 91 SSESLVANN---IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + E V + +++ I R E +L +EEA H+ Sbjct: 91 AGEESVTLDLLPLIMVIARE-GRLEEEMFLTTFLWEEAKHTE 131 >gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885] gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885] Length = 359 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 18/160 (11%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDV---NQLLPLKYGWAWEKYLSACN-NHWMPTEVP 60 TG+S G S + L P++ Y A W P + Sbjct: 4 TGVSGAADGRPVAAEARHDAFVTTSRRGLNHDLPPMR------LYHKAKKFGTWDPRAID 57 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN---IVLAIYRHLSNPECRQYL 117 ++ D WK L D ++ + R + FA+ E V + +++ I R E +L Sbjct: 58 LRQDKEDWK---LLNDAQKDALLRLVSLFAAGEESVTLDLLPLIMVIARE-GRLEEEMFL 113 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +EEA H+ + + + GE + Y PS Sbjct: 114 TTFLWEEAKHTEFMRRFLDEVAGVSGEDLHHYHT-PSYKK 152 >gi|134303461|ref|YP_001111330.1| ribonucleotide reductase small subunit [Gryllus bimaculatus nudivirus] gi|134022847|gb|ABO45396.1| ribonucleotide reductase small subunit [Gryllus bimaculatus nudivirus] Length = 371 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 + +L W P E+ + D A + + + + LG A +++V N+ Sbjct: 72 YNFWLKQVALAWSPEEISLSKDKATFHRAP---EQLKKISACMLGMLAIGDNIVLQNLSD 128 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + ++N + RQ E HS + + L Sbjct: 129 -VSEIITNNYVLNAISRQEDVEKTHSDFYSRSLDVL 163 >gi|24943146|ref|NP_733908.1| ORF54 [Callitrichine herpesvirus 3] gi|13676697|gb|AAK38263.1|AF319782_57 ORF54 [callitrichine herpesvirus 3] Length = 302 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+ + + + + L + K F A +E LV NI + + Sbjct: 22 RNRWVAVHISL---VRDCEGVRELNPRDLEFYKFLFTFLAMAEKLVNFNI-DELLPQFCS 77 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTL 169 + Y Q E +H T+ I+ L + + Y I KA + + + Sbjct: 78 HDIEHYYTEQKAMENIHGETYANILNMLFDGDKKAVAQY-ADEVIADKALQAKICWLNGM 136 Query: 170 SSPSFHYWNKRRRSRILTRSLRFL 193 + S ++ +L + F+ Sbjct: 137 VN-SAVTKAEKILIFLLIEGIFFI 159 >gi|50365347|ref|YP_053772.1| ribonucleotide-diphosphate reductase subunit beta [Mesoplasma florum L1] gi|50363903|gb|AAT75888.1| ribonucleoside-diphosphate reductase beta chain [Mesoplasma florum L1] Length = 340 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P ++P+ +DL W++ LT + + +I R +++ A V Sbjct: 42 EVWNRITQNFWLPEKIPVSNDLTSWRT---LTPEWQELITRTFTGLTLLDTIQATVGDVA 98 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + L++ E + AF AVH+ ++ I ++L E E ++ +A Sbjct: 99 QVPNSLTDHE-QVIYTNFAFMVAVHARSYGSIFSTLCSSEQIEEAHEWVINTETLQERAK 157 Query: 161 WALQYT 166 + Y Sbjct: 158 ALIPYY 163 >gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 337 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I RN +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF A+H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQERARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|226349643|ref|YP_002776757.1| hypothetical protein ROP_pROB01-04060 [Rhodococcus opacus B4] gi|226245558|dbj|BAH55905.1| hypothetical protein [Rhodococcus opacus B4] Length = 326 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 9/106 (8%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + + W P + D + GL+D+E+ + F + E VA ++ Sbjct: 29 AMKLFRKGNKKFWDPEAIDFSQDAQDFA---GLSDEEKRLTCILAAHFIAGEESVAQDL- 84 Query: 102 LAIYRHLSNPECRQ----YLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + E R YL + FEEA H F+ ++GL Sbjct: 85 QPFMSAM-AAEGRLADEAYLTQFTFEEAKHMQAFRLWFDAVGLSSD 129 >gi|82503214|ref|YP_401656.1| BaRF1 [Human herpesvirus 4] gi|139424488|ref|YP_001129453.1| BaRF1 [Human herpesvirus 4 type 2] gi|238055355|sp|P0CAP6|RIR2_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|238055356|sp|P0CAP7|RIR2_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|238055357|sp|P0C701|RIR2_EBVG RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1334857|emb|CAA24843.1| unnamed protein product [Human herpesvirus 4] gi|23893602|emb|CAD53406.1| ribonucleoside-diphosphate reductase small chain [Human herpesvirus 4] gi|64173256|gb|AAY41106.1| unknown [Human herpesvirus 4] gi|82703964|gb|ABB89233.1| BaRF1 [Human herpesvirus 4] Length = 302 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 14/118 (11%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W + + D K L + + K F A +E LV NI +++ Sbjct: 22 RNRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFNIDE----LVTS 74 Query: 111 PE---CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSITAKANW 161 E Y Q E VH T+ I+ L + N Y E ++ AK +W Sbjct: 75 FESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISW 132 >gi|269123322|ref|YP_003305899.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis DSM 12112] gi|268314648|gb|ACZ01022.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis DSM 12112] Length = 333 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W S L+ + R K+ LG ++L ++ + I Sbjct: 22 FWEQNLRQFWIDTEYIPSKDIDSWHS---LSPEMRETYKKVLGGLTLLDTLQSHTGMPKI 78 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + +CR L E++H+ ++ I T++ E E+F ++ + KAN Sbjct: 79 IDHIESLQCRSVLSYMCMMESIHAKSYSTIFTTVASTEEINEIFRWVQDNQYLQFKANKI 138 Query: 163 LQYTQTLSSPS 173 +Y Q L++P+ Sbjct: 139 DEYYQCLNNPN 149 >gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1] gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain) [Mycobacterium gilvum PYR-GCK] gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1] Length = 312 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P ++ D A W+S L+ ER R F + E V +I Sbjct: 23 LFAGGNAKFWDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDI-QPF 78 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + E R YL + AFEEA H+ F+ + ++G+ E Sbjct: 79 MAAMRA-EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED 120 >gi|25010526|ref|NP_734921.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae NEM316] gi|23094879|emb|CAD46097.1| unknown [Streptococcus agalactiae NEM316] Length = 336 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +DL W++ L D + +I R +S+ A +A Sbjct: 38 EVWNRVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGLTLLDSVQATVGDIA 94 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +H + AF A+H+ ++ I ++L Sbjct: 95 QIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTL 129 >gi|22536601|ref|NP_687452.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae 2603V/R] gi|76788476|ref|YP_329136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae A909] gi|76798641|ref|ZP_00780867.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77406064|ref|ZP_00783140.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|77407720|ref|ZP_00784475.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77411308|ref|ZP_00787657.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77414130|ref|ZP_00790296.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|22533438|gb|AAM99324.1|AE014211_1 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae 2603V/R] gi|76563533|gb|ABA46117.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae A909] gi|76586006|gb|EAO62538.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77159800|gb|EAO70945.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|77162644|gb|EAO73606.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77173719|gb|EAO76833.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77175344|gb|EAO78137.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|319744439|gb|EFV96796.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 336 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++P+ +DL W++ L D + +I R +S+ A +A Sbjct: 38 EVWNRVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGLTLLDSVQATVGDIA 94 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +H + AF A+H+ ++ I ++L Sbjct: 95 QIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTL 129 >gi|57867410|ref|YP_189075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis RP62A] gi|57638068|gb|AAW54856.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus epidermidis RP62A] Length = 340 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 9/116 (7%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV-ANNI 100 A + W E DL++WK+ L+ DE+ + L ++ + Sbjct: 19 ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75 Query: 101 VLAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 L + + PE R + E +H ++ +I TSL + + + VP+ Sbjct: 76 PLLAFHY---PEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPA 128 >gi|269941513|emb|CBI49911.1| ribonucleoside-diphosphate reductase subunit [Staphylococcus aureus subsp. aureus TW20] Length = 340 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 9/116 (7%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV-ANNI 100 A + W E DL++WK+ L+ DE+ + L ++ + Sbjct: 19 ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75 Query: 101 VLAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 L + + PE R + E +H ++ +I TSL + + + VP+ Sbjct: 76 PLLAFHY---PEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPA 128 >gi|308233466|ref|ZP_07664203.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium vaginae DSM 15829] gi|328943412|ref|ZP_08240877.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium vaginae DSM 15829] gi|327491381|gb|EGF23155.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium vaginae DSM 15829] Length = 339 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 7/144 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 ++ E + N W+P +P+ +DL W N L + +I R Sbjct: 23 GCNMRAVNWNRIQDEKDLEVWNRVTQNFWLPENIPVSNDLPSW---NELDSSWQQLIIRT 79 Query: 86 LGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142 +++ A V I L++ E + AF AVH+ ++ + ++L E Sbjct: 80 FTGLTLLDTVQATVGDVAQIRHALTDIE-QANYANFAFMVAVHARSYGTVFSTLCSSEQI 138 Query: 143 GELFNMYREVPSITAKANWALQYT 166 E ++ +A + Y Sbjct: 139 DEAQAWVVNNDALQKRAKALIPYY 162 >gi|301750612|gb|ADK88940.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4] Length = 316 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 8/126 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ +E+ D + L+ +E + F ++++ LV Sbjct: 20 PDINRLRSLSILNRWLESELVFSGDERD---VDKLSPEELDFYRFLFTFLSAADDLVTEE 76 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DEGELFNMYRE---VPSI 155 + + S + Y + Q E VHS + I L DE N +I Sbjct: 77 LG-RLSSLFSQKDILHYYVEQECIEVVHSRVYSIIQMVLFKSDETARRNYVANTVHNSAI 135 Query: 156 TAKANW 161 AK W Sbjct: 136 QAKVRW 141 >gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 337 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF A+H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQERARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|149277655|ref|ZP_01883795.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39] gi|149231343|gb|EDM36722.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39] Length = 327 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ WKS L+ + + + KR LG ++L ++ + + Sbjct: 20 FWEQNLRQFWVDTEYIPSKDIDSWKS---LSPEIQQVYKRALGGLTLLDTLQSHTGMPKL 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L EA+H+ ++ I T++ ELF+ + KA+ Sbjct: 77 LDHIDGLQNKAVLSFMCMMEAIHAKSYSTIFTTVNSTPEINELFDWVENNKLLQFKASTI 136 Query: 163 LQYTQTLSSP 172 +Y + L P Sbjct: 137 DKYYRALDVP 146 >gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus castenholzii DSM 13941] gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941] Length = 295 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN---IVLAIYRHLSN 110 W P+++ D+ W++ LTDDER ++ R F + E V + +V I Sbjct: 33 WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89 Query: 111 PECRQYLLRQAFEEAVHSHTF 131 E +L +EEA H+ F Sbjct: 90 -EEELFLTSFLWEEAKHTDFF 109 >gi|195977665|ref|YP_002122909.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974370|gb|ACG61896.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 337 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+S L +D + +I R +++ A V Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGLTLLDTVQATVGDVA 95 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I L++ E + AF A+H+ ++ I ++L + E + S+ +A Sbjct: 96 QIQHSLTDHE-QVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHDWVVSTESLQERAR 154 Query: 161 WALQYT 166 + Y Sbjct: 155 VLIPYY 160 >gi|225869037|ref|YP_002744985.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. zooepidemicus] gi|225702313|emb|CAX00111.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. zooepidemicus] Length = 337 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+S L +D + +I R +++ A V Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGLTLLDTVQATVGDVA 95 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I L++ E + AF A+H+ ++ I ++L + E + S+ +A Sbjct: 96 QIQHSLTDHE-QVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHDWVVSTESLQERAR 154 Query: 161 WALQYT 166 + Y Sbjct: 155 VLIPYY 160 >gi|225869986|ref|YP_002745933.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. equi 4047] gi|225699390|emb|CAW92836.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. equi 4047] Length = 337 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P +VP+ +DL W+S L +D + +I R +++ A V Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGLTLLDTVQATVGDVA 95 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 I L++ E + AF A+H+ ++ I ++L + E + S+ +A Sbjct: 96 QIQHSLTDHE-QVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHDWVVSTESLQERAR 154 Query: 161 WALQYT 166 + Y Sbjct: 155 VLIPYY 160 >gi|51518029|ref|YP_067954.1| BaRF1 [Macacine herpesvirus 4] gi|18025480|gb|AAK95424.1| BaRF1 [Macacine herpesvirus 4] Length = 302 Score = 52.9 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 14/118 (11%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W + + D K L + + K F A +E LV NI +++ Sbjct: 22 RNRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFNIDE----LVTS 74 Query: 111 PE---CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSITAKANW 161 E Y Q E VH T+ I+ L + N Y E ++ AK +W Sbjct: 75 FESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADGALQAKISW 132 >gi|148656105|ref|YP_001276310.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus sp. RS-1] gi|148568215|gb|ABQ90360.1| ribonucleotide reductase [Roseiflexus sp. RS-1] Length = 297 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN---IVLAIYRHLSN 110 W P+++ D+ W++ LT DER ++ R F + E V + +V I Sbjct: 32 WNPSDIDFSQDVRDWQT---LTADERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 88 Query: 111 PECRQYLLRQAFEEAVHSHTF 131 E +L +EEA H+ F Sbjct: 89 -EEELFLTSFLWEEAKHTDFF 108 >gi|159146681|gb|ABW90785.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4] Length = 316 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ +E+ D + L+ +E + F ++++ LV Sbjct: 20 PDINRLRSLSILNRWLESELVFSGDERD---VDKLSPEELDFYRFLFTFLSAADDLVTEE 76 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + + S + Y + Q E VHS + I Sbjct: 77 LG-RLSSLFSQKDILHYYVEQECIEVVHSRVYSII 110 >gi|303232548|ref|ZP_07319234.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium vaginae PB189-T1-4] gi|302481335|gb|EFL44409.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium vaginae PB189-T1-4] Length = 351 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL--MIKRNLGFFASSESLVAN-NI 100 E + N W+P +P+ +DL W T DER +I R +++ A+ Sbjct: 53 EVWNRVTQNFWLPENIPVSNDLPSWN-----TLDERWQQLIIRTFTGLTLLDTVQASVGD 107 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158 V I +++ E + AF AVH+ ++ I ++L E E ++ A+ Sbjct: 108 VAQIRHAITDIE-QANYANFAFMVAVHARSYGTIFSTLCSSEQIDEAQAWVVHNDALQAR 166 Query: 159 ANWALQYT 166 A + Y Sbjct: 167 AQALIPYY 174 >gi|331699199|ref|YP_004335438.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia dioxanivorans CB1190] gi|326953888|gb|AEA27585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia dioxanivorans CB1190] Length = 324 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 15/113 (13%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++ + HW P ++ D +TDDER F + E Sbjct: 26 FPMR------LFAKGNARHWNPADIDFSQDARD---IAAMTDDERWWTFALAAQFMAGEE 76 Query: 95 LVANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 V ++ + E R YL + FEEA H+ F+ ++G+ E Sbjct: 77 SVTQDLQPFVAAM--AAEGRLADEMYLTQFVFEEAKHTDAFRRWFDAVGMTED 127 >gi|229489433|ref|ZP_04383296.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] gi|229323530|gb|EEN89288.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] Length = 318 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W PT++ D W+ LT +++ F + E V +I Sbjct: 28 LFTKGNAKFWNPTDLDFSQDARDWQE---LTSEQQRSATFLCAQFIAGEEAVTEDI-QPF 83 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + +S E R YL + FEEA H+ F+ + +GL Sbjct: 84 MKAMS-TEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGLTSD 125 >gi|226305446|ref|YP_002765406.1| hypothetical protein RER_19590 [Rhodococcus erythropolis PR4] gi|226184563|dbj|BAH32667.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 318 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W PT++ D W+ LT +++ F + E V +I Sbjct: 28 LFTKGNAKFWNPTDLDFSQDARDWQE---LTSEQQRSATFLCAQFIAGEEAVTEDI-QPF 83 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + +S E R YL + FEEA H+ F+ + +GL Sbjct: 84 MKAMS-TEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGLTSD 125 >gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta [Saccharomonospora viridis DSM 43017] gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] Length = 328 Score = 52.5 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P ++ D W+ LTD +RL FA+ E V +I Sbjct: 31 LFAKGNRKFWDPADIDFSVDARDWEK---LTDRQRLSATYLCAQFAAGEEAVTEDI-QPF 86 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R + E R YL + FEEA H+ F+ + ++GL + Sbjct: 87 LRAM-AAEGRLGDEMYLAQFCFEEAKHTEAFRRWMDAVGLTDD 128 >gi|326803224|ref|YP_004321042.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650868|gb|AEA01051.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 337 Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 5/117 (4%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 + E + N W+P +P+ +DL W N L DD + +I R Sbjct: 23 NMRAINWNKIVDEKDLEVWNRVTQNFWLPENIPVSNDLPSW---NELDDDWQQLITRTFT 79 Query: 88 FFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 +++ ++ V I L+ E + AF VH+ ++ I ++L E Sbjct: 80 GLTLLDTVQSSIGDVAQIKNSLTEQE-QVIYANFAFMVGVHARSYGTIFSTLCTSEQ 135 >gi|313665031|ref|YP_004046902.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma leachii PG50] gi|312949985|gb|ADR24581.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma leachii PG50] Length = 339 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K + E + N W+P ++P+ +DL W+S L+ + + + Sbjct: 19 KNNFKGNLRSVNWNVINDEKDLEVWNRITQNFWLPEKIPVSNDLPSWRS---LSAEWQQL 75 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R +++ A V I L++ E + AF VH+ ++ I ++L Sbjct: 76 VTRTFTGLTLLDTVQATVGDVAQIEHSLTDHE-QVIYSNFAFMVGVHARSYGTIFSTLCS 134 Query: 141 DE--GELFNMYREVPSITAKANWALQYT 166 E E + S+ +A + Y Sbjct: 135 SEQIEEAHEWVVKTESLQKRAKALIPYY 162 >gi|83319806|ref|YP_424093.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283692|gb|ABC01624.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 339 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K + E + N W+P ++P+ +DL W+S L+ + + + Sbjct: 19 KNDFKGNLRSVNWNVINDEKDLEVWNRITQNFWLPEKIPVSNDLPSWRS---LSAEWQQL 75 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R +++ A V I L++ E + AF VH+ ++ I ++L Sbjct: 76 VTRTFTGLTLLDTVQATVGDVAQIEHSLTDHE-QVIYSNFAFMVGVHARSYGTIFSTLCS 134 Query: 141 DE--GELFNMYREVPSITAKANWALQYT 166 E E + S+ +A + Y Sbjct: 135 SEQIEEAHEWVVKTESLQKRAKALIPYY 162 >gi|298247783|ref|ZP_06971588.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963] gi|297550442|gb|EFH84308.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963] Length = 293 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 12/118 (10%) Query: 31 VNQLLPLKYGWAWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + +LP++ Y A W P ++ + D W+ L +D R ++ + F Sbjct: 18 RHDILPMR------LYHKAKKLGTWDPRDIDLSQDCQDWQQ---LAEDPRTRLRNLILSF 68 Query: 90 ASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 + E V +++ I E +L +EE H+ F+ I+ + EG+L Sbjct: 69 QAGEEAVTLDLLPLIMTVAREGRLEEELFLTTFLWEEGKHTEFFRRILDEVMQAEGDL 126 >gi|226311199|ref|YP_002771093.1| hypothetical protein BBR47_16120 [Brevibacillus brevis NBRC 100599] gi|226094147|dbj|BAH42589.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 297 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 43 WEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ Y A W P ++ D + + N +E + R GF E++ + + Sbjct: 22 YQLYQKAKRYGIWNPQDIDFTQDREDYANMNPEQKEE--TLGRIAGFLGGEEAVTLDLLP 79 Query: 102 L-AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 L + E +L FEEA H+ F+ ++ ++G Sbjct: 80 LIMVIAEEGRLEEEMFLTTFLFEEAKHTEFFRLVLDNIG 118 >gi|56410463|ref|YP_145837.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|56378360|dbj|BAD74269.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus HTA426] Length = 292 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 11/94 (11%) Query: 42 AWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 AW+ Y A W P E+ + +D +K L + R + F ++E N+ Sbjct: 32 AWKLYQMAIRFGTWNPQEIDLSEDKKHFKQ---LDEQRRAYLIHFCTGFWNAE----ENV 84 Query: 101 VLAIYRHLSNP---ECRQYLLRQAFEEAVHSHTF 131 L + E + +L Q +E H+ F Sbjct: 85 ALKFCPWIMIAPSIEQQAFLSTQLVDEFKHTEFF 118 >gi|306827912|ref|ZP_07461179.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] gi|304429831|gb|EFM32873.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 337 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF +H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQDRARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|56807592|ref|ZP_00365501.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus pyogenes M49 591] Length = 311 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 13 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 69 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF +H+ ++ I ++L E E S+ +A Sbjct: 70 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQDRARV 129 Query: 162 ALQYT 166 + Y Sbjct: 130 LIPYY 134 >gi|209558898|ref|YP_002285370.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes NZ131] gi|209540099|gb|ACI60675.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Streptococcus pyogenes NZ131] Length = 337 Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF +H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQDRARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|21909837|ref|NP_664105.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS315] gi|28896468|ref|NP_802818.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes SSI-1] gi|50913718|ref|YP_059690.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10394] gi|21904023|gb|AAM78908.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes MGAS315] gi|28811719|dbj|BAC64651.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes SSI-1] gi|50902792|gb|AAT86507.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10394] Length = 337 Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF +H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQDRARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|15674552|ref|NP_268726.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes M1 GAS] gi|71910160|ref|YP_281710.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS5005] gi|94987981|ref|YP_596082.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS9429] gi|94989855|ref|YP_597955.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10270] gi|94991863|ref|YP_599962.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS2096] gi|13621658|gb|AAK33447.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes M1 GAS] gi|71852942|gb|AAZ50965.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS5005] gi|94541489|gb|ABF31538.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS9429] gi|94543363|gb|ABF33411.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10270] gi|94545371|gb|ABF35418.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS2096] Length = 337 Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF +H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQDRARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|139474322|ref|YP_001129038.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes str. Manfredo] gi|134272569|emb|CAM30835.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus pyogenes str. Manfredo] Length = 337 Score = 51.4 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF +H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQDRARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|262038309|ref|ZP_06011695.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia goodfellowii F0264] gi|261747660|gb|EEY35113.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia goodfellowii F0264] Length = 334 Score = 51.4 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W S L + +L + LG ++L ++ + I Sbjct: 22 FWEQNLKQFWIDTEYIPSKDIDSWHS---LEPEMKLAYLQVLGGLTLLDTLQSHTGMPKI 78 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + +CR L E +H+ ++ I T++ E FN +E + KAN Sbjct: 79 IDHIESLQCRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFNWVQENEHLQYKANKI 138 Query: 163 LQYTQTLSSP 172 Y Q +++P Sbjct: 139 DYYYQKMNNP 148 >gi|94993745|ref|YP_601843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10750] gi|94547253|gb|ABF37299.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10750] Length = 337 Score = 51.4 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H + AF +H+ ++ I ++L E E S+ +A Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTQSLQDRARV 155 Query: 162 ALQYT 166 + Y Sbjct: 156 LIPYY 160 >gi|330861132|emb|CBX71395.1| hypothetical protein YEW_EY21270 [Yersinia enterocolitica W22703] Length = 90 Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVA 97 +++ Sbjct: 71 DTIQN 75 >gi|203288309|ref|YP_002223359.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia recurrentis A1] gi|203288575|ref|YP_002223482.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia duttonii Ly] gi|201084282|gb|ACH93870.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia duttonii Ly] gi|201085529|gb|ACH95102.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia recurrentis A1] Length = 321 Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD +W N L+ DER + ++ LG ++ + + I Sbjct: 21 FWDQNIRQFWVDEEIPISDDKLVW---NTLSVDERDVYEKVLGGLTLLDTEQGSVGMPRI 77 Query: 105 YRHLSNPECRQYLLRQAFEEAVHS 128 + N + + L E +H+ Sbjct: 78 ALAIDNLDYKPILGFMGAMEHMHA 101 >gi|294998842|gb|ADF58156.1| ribonucleoside-diphosphate reductase beta subunit [Pseudomonas phage JG004] Length = 348 Score = 51.0 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 5/127 (3%) Query: 38 KYGWAWEKYLSA-CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 KY E W +E M+ +L K L + +K L F E +V Sbjct: 30 KYPVIVELANQQLEEKLWFSSE--MKVELDKLNLKFKLEPHQLHAVKTVLQLFLKYELIV 87 Query: 97 ANN-IVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + + R PE + E AVH+ + I LG+D + Y++ P Sbjct: 88 GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147 Query: 155 ITAKANW 161 + + +W Sbjct: 148 LMGRMDW 154 >gi|6581175|gb|AAF04633.2|AF099142_1 small subunit of ribonucleotide reductase [shrimp white spot syndrome virus] Length = 100 Score = 51.0 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 15/48 (31%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 V+ + + P+ + WE Y W E+ + D Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERD 99 >gi|331703804|ref|YP_004400491.1| ribonucleoside diphosphate reductase 2 betachain [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383837|gb|ACU78407.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256384668|gb|ACU79237.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455270|gb|ADH21505.1| ribonucleoside-diphosphate reductase, beta subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802359|emb|CBW54513.1| Ribonucleoside diphosphate reductase 2 betachain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 339 Score = 51.0 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 7/148 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K + E + N W+P ++P+ +DL+ W+S L+ + + + Sbjct: 19 KNNFKGNLRSVNWNVINDEKDLEVWNRITQNFWLPEKIPVSNDLSSWRS---LSSEWQQL 75 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R +++ A V I L++ E + AF VH+ ++ I ++L Sbjct: 76 VTRTFTGLTLLDTVQATVGDVAQIEHSLTDHE-QVIYSNFAFMVGVHARSYGTIFSTLCS 134 Query: 141 DE--GELFNMYREVPSITAKANWALQYT 166 E E + ++ +A + Y Sbjct: 135 SEQIEEAHEWVVKTETLQKRAKALIPYY 162 >gi|42561374|ref|NP_975825.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492872|emb|CAE77467.1| ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321363|gb|ADK70006.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 339 Score = 51.0 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 7/148 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K + E + N W+P ++P+ +DL+ W+S L+ + + + Sbjct: 19 KNNFKGNLRSVNWNVINDEKDLEVWNRITQNFWLPEKIPVSNDLSSWRS---LSSEWQQL 75 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R +++ A V I L++ E + AF VH+ ++ I ++L Sbjct: 76 VTRTFTGLTLLDTVQATVGDVAQIEHSLTDHE-QVIYSNFAFMVGVHARSYGTIFSTLCS 134 Query: 141 DE--GELFNMYREVPSITAKANWALQYT 166 E E + ++ +A + Y Sbjct: 135 SEQIEEAHEWVVKTETLQKRAKALIPYY 162 >gi|257125877|ref|YP_003163991.1| ribonucleoside-diphosphate reductase [Leptotrichia buccalis C-1013-b] gi|257049816|gb|ACV39000.1| Ribonucleoside-diphosphate reductase [Leptotrichia buccalis C-1013-b] Length = 335 Score = 51.0 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W N L +L LG ++L ++ + I Sbjct: 22 FWEQNLKQFWIDTEYIPSKDIDSW---NSLEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 78 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + R L E +H+ ++ I T++ E F +E P + KAN Sbjct: 79 IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 138 Query: 163 LQYTQTLSSP 172 Y Q +++P Sbjct: 139 DTYYQKMNNP 148 >gi|71903000|ref|YP_279803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS6180] gi|71802095|gb|AAX71448.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS6180] Length = 337 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +H + AF +H+ ++ I ++L Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTL 130 >gi|320450740|ref|YP_004202836.1| ribonucleoside-diphosphate reductase subunit beta [Thermus scotoductus SA-01] gi|320150909|gb|ADW22287.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus scotoductus SA-01] Length = 299 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 13/104 (12%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 PLK Y A W P + +++D K+ L+ +++ F + E Sbjct: 17 FPLK------LYHKAKRYFWDPQTIDLEEDQ---KTFQKLSPEQKEASLHLASLFVAGEE 67 Query: 95 LVANN---IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 V + +V I R E +L +EA H F ++ Sbjct: 68 AVTLDLLPLVQVIARE-GRLEEEMFLTTFLVDEAKHVEFFSLLL 110 >gi|19745563|ref|NP_606699.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS8232] gi|19747686|gb|AAL97198.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes MGAS8232] Length = 337 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+S L +D + +I R +++ A +A Sbjct: 39 EVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +H + AF +H+ ++ I ++L Sbjct: 96 QIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTL 130 >gi|260889741|ref|ZP_05901004.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia hofstadii F0254] gi|260860347|gb|EEX74847.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia hofstadii F0254] Length = 335 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W N L +L LG ++L ++ + I Sbjct: 23 FWEQNLKQFWIDTEYIPSKDIDSW---NSLEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 79 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + R L E +H+ ++ I T++ E F +E P + KAN Sbjct: 80 IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 139 Query: 163 LQYTQTLSSP 172 Y Q +++P Sbjct: 140 DAYYQKMNNP 149 >gi|66957902|gb|AAY59065.1| ribonucleotide reductase small subunit [Tortoise herpesvirus] Length = 215 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 9/135 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 A N W E DD+ + + L + + F ++++ V N+ + Sbjct: 16 LRNLAIKNRWAEDEFMYTDDIKDF---SRLDPEALDFYRFIFTFLSAADDKVNINL-DQL 71 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSITAKAN 160 + + Y Q E VHS T+ + +L ++ + Y E P+I K + Sbjct: 72 KQLFPQKDVHHYYATQEDIECVHSRTYAGVQLALFNNDDDARRRYIEANVSHPTIETKFD 131 Query: 161 WA-LQYTQTLSSPSF 174 W + + S P Sbjct: 132 WLNTKIMENESVPEK 146 >gi|33340378|gb|AAQ14729.1|AF320576_197 putative ribonucleoside diphosphate reductase beta chain [Enterobacteria phage Felix 01] Length = 377 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 3/163 (1%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 L L Y +E Y W E P + ++S ++ Sbjct: 28 FLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPASMSG---VML 84 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L + +++ VA ++ A +S+ +++Q+ E +H+ T+ I+ + Sbjct: 85 EILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPE 144 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + + + ++ + + + L +Y R +L Sbjct: 145 TILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLL 187 >gi|326804460|ref|YP_004327264.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas phage PAK_P1] gi|290873873|gb|ADD65076.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas phage PAK_P1] Length = 348 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 5/127 (3%) Query: 38 KYGWAWEKYLSA-CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 KY E W +E M+ +L K L + +K L F E +V Sbjct: 30 KYPVIVELANQQLEEKLWFSSE--MKVELDKLNLKFKLEPHQLHAVKTVLQLFLKYELIV 87 Query: 97 ANN-IVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + + R PE + E AVH+ + I LG+D + Y++ P Sbjct: 88 GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147 Query: 155 ITAKANW 161 + + W Sbjct: 148 LMGRMEW 154 >gi|38707874|ref|NP_944994.1| Ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage Felix 01] gi|238801854|ref|YP_002922904.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage WV8] gi|33340477|gb|AAQ14828.1| putative ribonucleoside diphosphate reductase beta chain [Enterobacteria phage Felix 01] gi|216263067|gb|ACJ71935.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage WV8] Length = 357 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 3/163 (1%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 L L Y +E Y W E P + ++S ++ Sbjct: 8 FLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPASMSG---VML 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L + +++ VA ++ A +S+ +++Q+ E +H+ T+ I+ + Sbjct: 65 EILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPE 124 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + + + ++ + + + L +Y R +L Sbjct: 125 TILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLL 167 >gi|326383562|ref|ZP_08205248.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia neofelifaecis NRRL B-59395] gi|326197646|gb|EGD54834.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 13/105 (12%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P + D W GLTDD+R + F + E V +I Sbjct: 10 LFTKGNAKTWDPASIDFSQDALDWA---GLTDDQRRSATYLVSQFVAGEEAVTEDI---- 62 Query: 105 YRHLSNPEC------RQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 ++ YL + +EA H+ F+ + ++GL E Sbjct: 63 RPFMNAMSAEDRFGDEMYLAQFCLDEAKHAQGFRLWMDAVGLTED 107 >gi|269975299|gb|ACZ55523.1| ribonucleoside diphosphate reductase beta chain [Staphylococcus phage SA1] Length = 357 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 3/163 (1%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 L L Y +E Y W E P + ++S ++ Sbjct: 8 FLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPASMSG---VML 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L + +++ VA ++ A +S+ +++Q+ E +H+ T+ I+ + Sbjct: 65 EILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPE 124 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRIL 186 + + + ++ + + + L +Y R +L Sbjct: 125 TILDEINQNIAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLL 167 >gi|163848862|ref|YP_001636906.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus aurantiacus J-10-fl] gi|222526817|ref|YP_002571288.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus sp. Y-400-fl] gi|163670151|gb|ABY36517.1| ribonucleotide reductase [Chloroflexus aurantiacus J-10-fl] gi|222450696|gb|ACM54962.1| ribonucleotide reductase [Chloroflexus sp. Y-400-fl] Length = 297 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P+ + + D+ W+ L D+ER ++ R F + E V +++ I Sbjct: 32 WNPSLIDLSRDIRDWEQ---LRDEERDLLLRLTALFQAGEEAVTLDLLPLIRTIAREGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYII 135 E YL FEEA H+ F I Sbjct: 89 EEELYLTTFLFEEAKHTDFFARFI 112 >gi|213585578|ref|ZP_03367404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 189 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PE ++ AF E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 2 IPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDEL 61 >gi|326800312|ref|YP_004318131.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] gi|326551076|gb|ADZ79461.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] Length = 327 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 5/128 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ +WK LT + + K+ LG ++L ++ + I Sbjct: 20 FWEQNIRQFWIDTEYIPSKDIDVWKK---LTPEMQETYKKALGGLTLLDTLQSHTGMPKI 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L EA+H+ ++ I T++ ELF ++ + KA Sbjct: 77 LDHIDGLQSKAVLSYMCMMEAIHAKSYSTIFTTVASTPEINELFEWVQDNKYLQFKAATI 136 Query: 163 LQYTQTLS 170 QY ++L Sbjct: 137 DQYYRSLD 144 >gi|221783|dbj|BAA00748.1| UL40 [Human herpesvirus 2] Length = 262 Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + F ++++ LV N+ + + Y + Q E VHS + I L Sbjct: 4 FYRFLFAFLSAADDLVTENLG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFH 62 Query: 141 DEGELFNMY--REV--PSITAKANW 161 + + Y R + P+I K +W Sbjct: 63 NNDQARRAYVARTINHPAIRVKVDW 87 >gi|227537625|ref|ZP_03967674.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|300771015|ref|ZP_07080892.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium spiritivorum ATCC 33861] gi|227242511|gb|EEI92526.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|300762288|gb|EFK59107.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium spiritivorum ATCC 33861] Length = 328 Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 7/156 (4%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + W+ TE D+ WK GL+ D + K+ LG ++L ++ + Sbjct: 18 ALMFWEQNIKQFWIDTEYIPSKDIDSWK---GLSWDMKECYKKALGGLTLLDTLQSHTGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159 I H+ + + + L EA+H+ ++ I T++ + ++F + + KA Sbjct: 75 PKIIDHIDSLQNKAVLSYMCMMEAIHAKSYSTIFTTVSTTNEINDVFGWVEQNKHLQFKA 134 Query: 160 NWALQYTQTL--SSPSFHYWNKRRRSRILTRSLRFL 193 +Y +++ P+ + +L S F Sbjct: 135 QTIDKYYRSIDKEDPTDEELFMALGASVLLESFLFY 170 >gi|57014145|gb|AAT68710.2| ribonucleoside reductase beta subunit [Borrelia hermsii] Length = 321 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD +W N L +ER + ++ LG ++ + + I Sbjct: 21 FWDQNIRQFWVDEEIPISDDKLVW---NTLDGEERDVYEKVLGGLTLLDTEQGSVGMPRI 77 Query: 105 YRHLSNPECRQYLLRQAFEEAVHS 128 + N + + L E +H+ Sbjct: 78 ALAIDNLDYKPVLGFMGAMEHMHA 101 >gi|71894414|ref|YP_278522.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma synoviae 53] gi|71851202|gb|AAZ43811.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma synoviae 53] Length = 339 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 7/128 (5%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN-NIVL 102 E + N W+P ++P+ +DL W N + + ++ R +++ A + Sbjct: 41 EVWNRVTQNFWLPEKIPVSNDLKSW---NEMDKSWQELLVRTFTGLTLLDTIQATLGDIA 97 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKAN 160 I L++ E + AF VH+ ++ I ++L D + + A+A Sbjct: 98 QIPNSLTDHE-QVIYANFAFMVGVHARSYGTIFSTLSNSDDIEKAHEWVINNEKLQARAK 156 Query: 161 WALQYTQT 168 + + Y + Sbjct: 157 FLVPYYTS 164 >gi|325003309|ref|ZP_08124421.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia sp. P1] Length = 326 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++ + HW P+ + D + +TDDER F + E Sbjct: 29 FPMR------LFSKGNGKHWDPSAIDFTQDAEDFA---AMTDDERWQTCALAAQFMAGEE 79 Query: 95 LVANNIVLAIYRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGL 140 V ++ + E R YL + +EEA H+ F+ ++G+ Sbjct: 80 SVTQDLQPFVAAM--AAEGRLGDEMYLTQFVYEEAKHTQAFRLWFDAVGM 127 >gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus] Length = 139 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 7/57 (12%) Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P + KA+WAL + + + +R + + F Sbjct: 1 IKDPKEREFLFNAVETLPCVKKKADWALNWIGNKDAQ----FGERVVAFAAVEGIFF 53 >gi|225593124|gb|ACN96043.1| ribonucleoside-diphosphate reductase beta subunit [Fischerella sp. MV11] Length = 53 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYRE 151 +H+ +PE + Q F+EA+H+ ++QYII ++ ++++ + Sbjct: 4 FKKHIPSPEIELCMAEQIFQEAMHNQSYQYIIETVVPSDRRTQVYDFWVN 53 >gi|86156146|gb|ABC86791.1| ribonucleotide reductase beta subunit [Borrelia turicatae] Length = 321 Score = 48.7 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD +W N L DER + ++ LG ++ + + I Sbjct: 21 FWDQNIRQFWVDEEIPISDDKLVW---NSLDIDERDVYEKVLGGLTLLDTEQGSVGMPRI 77 Query: 105 YRHLSNPECRQYLLRQAFEEAVHS 128 + N + L E +H+ Sbjct: 78 ALAIDNLAYKPVLGFMGAMEHMHA 101 >gi|85726187|gb|ABC79616.1| ribonucleotide reductase beta subunit [Borrelia hermsii DAH] Length = 321 Score = 48.3 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD +W N L +ER + ++ LG ++ + + + Sbjct: 21 FWDQNIRQFWVDEEIPISDDKLVW---NTLDGEERDVYEKVLGGLTLLDTEQGSVGMPRL 77 Query: 105 YRHLSNPECRQYLLRQAFEEAVHS 128 + N + + L E +H+ Sbjct: 78 ALAIDNLDYKPVLGFMGAMEHMHA 101 >gi|289811146|ref|ZP_06541775.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 68 Score = 48.3 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PE ++ AF E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 2 IPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDEL 61 >gi|262204313|ref|YP_003275521.1| ribonucleotide reductase subunit beta-like protein [Gordonia bronchialis DSM 43247] gi|262087660|gb|ACY23628.1| Ribonucleotide reductase beta subunit-like protein [Gordonia bronchialis DSM 43247] Length = 324 Score = 48.3 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 13/103 (12%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 +++ W P + D W+ + DDER + + + E V + Sbjct: 36 HLFVTGNARFWDPRGIDFSTDALDWRE---MRDDERRFVTYLVAQICAGEEAVTRD---- 88 Query: 104 IYRHLSNPEC------RQYLLRQAFEEAVHSHTFQYIITSLGL 140 + YL + AFE+A H+ F+ + + GL Sbjct: 89 VQPFGQAAAADGRLGDEMYLSQVAFEKAKHTEVFRLWMDAAGL 131 >gi|289583058|ref|YP_003481524.1| ribonucleotide reductase subunit beta [Natrialba magadii ATCC 43099] gi|289532611|gb|ADD06962.1| Ribonucleotide reductase beta subunit-like protein [Natrialba magadii ATCC 43099] Length = 309 Score = 47.9 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 16/110 (14%) Query: 36 PLKY---GWAWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 P+ Y ++E Y W P + + D W+ ++ E+ F Sbjct: 2 PIDYSNREKSYELYRKGKREGTWDPDDYDLTQDREDWEQF---SEAEQHRFLATCSGFYD 58 Query: 92 SESLVANNIVLAIYRHLSNP---------ECRQYLLRQAFEEAVHSHTFQ 132 E V + + + P + YL +Q +EEA H+ F Sbjct: 59 GEEDVTRTLAPYMMALDALPNDELPFDTVQEEMYLAQQVYEEAKHTDLFS 108 >gi|297529069|ref|YP_003670344.1| ribonucleotide reductase [Geobacillus sp. C56-T3] gi|297252321|gb|ADI25767.1| ribonucleotide reductase [Geobacillus sp. C56-T3] Length = 315 Score = 47.9 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 6/93 (6%) Query: 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ Y A N W P ++ D + LT +E++ + F++ E V +I+ Sbjct: 34 YKLYEKAKRNGKWNPADIDFSQDKEDFA---RLTSEEKIAALPLVAGFSAGEEAVTLDIL 90 Query: 102 LAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQ 132 E +L +EA H F Sbjct: 91 PMTNALARQGRLEDVMFLTTFMHDEAKHVEMFS 123 >gi|219847941|ref|YP_002462374.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus aggregans DSM 9485] gi|219542200|gb|ACL23938.1| ribonucleotide reductase [Chloroflexus aggregans DSM 9485] Length = 297 Score = 47.9 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--- 110 W P+ + D+ W N L+D+ER ++ R F + E V L + + Sbjct: 32 WNPSLLDFSRDIDDW---NRLSDEERDLLLRLTALFQAGEEAVT----LDLLPLIKAIAH 84 Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYII 135 E +L FEEA H+ F I Sbjct: 85 DGRLEEELFLTTFLFEEAKHTDFFARFI 112 >gi|269121363|ref|YP_003309540.1| ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC 33386] gi|268615241|gb|ACZ09609.1| Ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC 33386] Length = 331 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W N L + R K+ LG ++L ++ + + Sbjct: 20 FWEQNLKQFWIDTEYIPSKDIDSW---NSLEQEMREAYKKALGGLTLLDTLQSHTGMPKV 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + + L E +H+ ++ I T++ E+FN +E + KA Sbjct: 77 IDHIDSLQNKSVLSYMCMMETIHAKSYSTIFTTVATTPEINEIFNWVQENEYLQFKARTI 136 Query: 163 LQYTQTLS 170 Y + L Sbjct: 137 DSYYRKLD 144 >gi|70607929|ref|YP_256799.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68568577|gb|AAY81506.1| hypothetical protein Saci_2220 [Sulfolobus acidocaldarius DSM 639] Length = 345 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 45 KYLSACNNHWMP---TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 + + W P E+ +Q D W++ +++ ER + + F++ E V+ + Sbjct: 34 LWAKSNELFWSPLQFKEL-IQQDKQDWET---MSESEREISEYIATAFSAGEEAVSRYLA 89 Query: 102 LAI--YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + L E +L + EE H+ F+ + S+G+D+ Sbjct: 90 ELVIALDELGYTEEVLFLNQFQQEETRHTDAFRRWMDSIGMDKD 133 >gi|213028365|ref|ZP_03342812.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 73 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVA 97 +++ Sbjct: 67 DTIQN 71 >gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 224 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 14/76 (18%) Query: 122 FEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFHYWNK 179 E ++S + ++ + D + F +P + K + ++ Sbjct: 1 MMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWISN----------- 49 Query: 180 RRRSRILTRSLRFLCR 195 S R + F + Sbjct: 50 -DDSLYAERLVAFAAK 64 >gi|68010653|ref|XP_670832.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56486449|emb|CAH96459.1| hypothetical protein PB000804.01.0 [Plasmodium berghei] Length = 65 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 ++ ++++LN S+ L P+ Y W Y A + W Sbjct: 24 QKTKESNEKILNKESNRFTLHPIIYPEVWNFYKKAEASFWTA 65 >gi|284046663|ref|YP_003397003.1| ribonucleotide reductase [Conexibacter woesei DSM 14684] gi|283950884|gb|ADB53628.1| ribonucleotide reductase [Conexibacter woesei DSM 14684] Length = 306 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 6/93 (6%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 YG + + HW ++ D W + ++ER L F E VA Sbjct: 36 YGELYSLWERQ---HWAVQDLDFTQDKLDWHERFD--EEERFARMYGLSAFFIGEQRVAA 90 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + + R + R +L Q +EA H F Sbjct: 91 ELG-PLMRAAPQEDMRLFLCTQIADEARHVAFF 122 >gi|162448128|ref|YP_001621260.1| ribonucleoside-diphosphate reductase subunit beta [Acholeplasma laidlawii PG-8A] gi|161986235|gb|ABX81884.1| ribonucleoside-diphosphate reductase, beta chain [Acholeplasma laidlawii PG-8A] Length = 369 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 20/115 (17%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES--------L 95 Y + W P +V +Q DL +W + L ++ + +NL ++ + Sbjct: 36 HFYEQNLSQFWRPEDVSLQPDLNVW---SVLPENIQDAYAKNLLVLTFLDTHQGDIGMPV 92 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFN 147 V+ ++ ++ + L E VH+ ++ I + ++ ELF+ Sbjct: 93 VSRSLDDHFHQR------KAVLNFMGAMENAVHAKSYSNIFMTYMSNQKIDELFH 141 >gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 205 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 13/50 (26%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFLC 194 LFN +PSI KA WA ++ + + TR + F C Sbjct: 13 LFNAIENIPSIRKKALWAQKWIAS-------------DTSFDTRCVAFAC 49 >gi|166367087|ref|YP_001659360.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] gi|166089460|dbj|BAG04168.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] Length = 64 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWM 55 +SPI ++++ + + ++ QL ++Y WA Y N W+ Sbjct: 14 ISPIFNPAGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWI 63 >gi|21686785|ref|NP_663285.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus] gi|21637101|gb|AAM70318.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus] Length = 345 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 7/105 (6%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 Q+ P Y +W Y NHW E DDL+ ++ +T + + ++ A Sbjct: 35 QIWPPSYYPSWFYYQQHQANHWFANEHDPLDDLSGFEK---ITPAWQNALLQSFAALAIG 91 Query: 93 ESLVANNIVLAIYRHLSNPE-CRQYLLRQAFEEAVHSHTFQYIIT 136 + V I L E + QA E H + ++ Sbjct: 92 DDKVMCLISEN---ELQWEESTKWMFADQAARETTHKIAYNRMLE 133 >gi|70607921|ref|YP_256791.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68568569|gb|AAY81498.1| ribonucleotide reductase, small chain [Sulfolobus acidocaldarius DSM 639] Length = 330 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 11/121 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++ + W E+ D WK L +R K +F + E Sbjct: 32 FPMR------LFEIGEKFRWTAYELDFSKDREDWKK---LKPSDRTQNKIISSYFLAGEE 82 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 VA +I + L E YL + A +EA H+ F+ S+G EG Y+ Sbjct: 83 CVARDILPLANAMEELGLIEEALYLTQFARDEANHTVAFRKWFESVGETEGIYDFTYKNE 142 Query: 153 P 153 P Sbjct: 143 P 143 >gi|284176152|ref|YP_003406429.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena turkmenica DSM 5511] gi|284017809|gb|ADB63756.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena turkmenica DSM 5511] Length = 302 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y +A HW P E+ ++ D + L D +K++L F + E V ++ + Sbjct: 22 YYRNAVEKHWDPHEIDLEADR---EGATDLPDPAFEGLKQSLALFGAGEESVTEDLA-PL 77 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTF 131 L + E + ++ Q +EE+ H+ F Sbjct: 78 AVVLEDIEDQLFITTQLYEESKHTDFF 104 >gi|261418216|ref|YP_003251898.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus sp. Y412MC61] gi|319767824|ref|YP_004133325.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] gi|261374673|gb|ACX77416.1| ribonucleotide reductase [Geobacillus sp. Y412MC61] gi|317112690|gb|ADU95182.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] Length = 302 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA-NNI 100 ++ Y A N W P ++ D + LT +E++ + F++ E V + + Sbjct: 21 YKLYEKAKRNGKWNPADIDFSQDKEDFA---RLTSEEKIAALPLVAGFSAGEEAVTLDIL 77 Query: 101 VLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQ 132 +A E +L +EA H F Sbjct: 78 PMAHALARQGRLEDVMFLTTFMHDEAKHVEMFS 110 >gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] Length = 247 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 16/62 (25%) Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 + D E +F +PS+ KA WAL + + R + + Sbjct: 38 NTFIEDAQEKERIFEAIETIPSVQHKAEWALAWIND-------------DNCFAERLVAY 84 Query: 193 LC 194 C Sbjct: 85 AC 86 >gi|284046710|ref|YP_003397050.1| sterol-binding domain protein [Conexibacter woesei DSM 14684] gi|283950931|gb|ADB53675.1| Sterol-binding domain protein [Conexibacter woesei DSM 14684] Length = 419 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + ++ +W TE+ D W+ + ER N F E V Sbjct: 10 ISYEDLYARWERG---NWRATEIDFTADSEQWQERFD--AFERRAALWNYSLFFHGEDAV 64 Query: 97 ANNIVLAIYRHLSNP---ECRQYLLRQAFEEAVHS 128 A+N+ ++ E + +L Q +EA H+ Sbjct: 65 ADNL----SPYIDAAPLEEQKYFLTTQQVDEARHA 95 >gi|213621399|ref|ZP_03374182.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 70 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLV 96 +++ Sbjct: 67 DTIQ 70 >gi|26553540|ref|NP_757474.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma penetrans HF-2] gi|26453546|dbj|BAC43878.1| ribonucleotide diphosphate reductase subunit beta [Mycoplasma penetrans HF-2] Length = 339 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 7/148 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K L + + E + N W+P ++ + +DL W N L + + + Sbjct: 19 KDGLKGKMRSVNWNFINDDKDLEVWNRITQNFWLPEKIAISNDLPSW---NKLDSNWQEL 75 Query: 82 IKRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R +S+ A V + L++ E + AF VH+ ++ I ++ Sbjct: 76 VVRTFTGLTLLDSIQATIGDVAQVKNSLTDHE-QVIYTNFAFMVGVHARSYGSIFSTFCS 134 Query: 141 DE--GELFNMYREVPSITAKANWALQYT 166 + + S+ +A + Y Sbjct: 135 SDQINSAHDWVVNCESLQKRAQVLIPYY 162 >gi|302530556|ref|ZP_07282898.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp. AA4] gi|302439451|gb|EFL11267.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp. AA4] Length = 323 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 ++ W P ++ + W + LT +++ + F + E V +I Sbjct: 29 LFVKGNKKFWNPADLDFSKEREGW---DSLTPEQQRSTTYLVAQFIAGEEAVTEDI-QPF 84 Query: 105 YRHLSNPE---CRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R +S YL + FEEA H F+ + ++GLD+ Sbjct: 85 MRAMSATGRFGDEMYLTQFCFEEAKHVEVFRRWMDAVGLDDD 126 >gi|213420353|ref|ZP_03353419.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 3 WAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDEL 52 >gi|300790300|ref|YP_003770591.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] gi|299799814|gb|ADJ50189.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] Length = 322 Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 7/102 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 ++ W P ++ + W + L +++ + F + E V +I Sbjct: 29 LFVKGNKKFWNPADIDFSREREGW---DTLNPEQQRSTTYLVAQFIAGEEAVTEDI-QPF 84 Query: 105 YRHLSNPE---CRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R +S YL + FEEA H+ F+ + ++GL E Sbjct: 85 MRAMSATGRFGDEMYLTQFCFEEAKHTEVFRRWMDAVGLTED 126 >gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus] Length = 219 Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 LFN +P + KA+WAL + + + + +R + + F Sbjct: 23 LFNAIDNLPCVKKKADWALNWISSKQA----NFGERVVAFAAVEGIFF 66 >gi|209523559|ref|ZP_03272113.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328] gi|209495964|gb|EDZ96265.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328] gi|291570482|dbj|BAI92754.1| ribonucleoside-diphosphate reductase beta chain, fragment [Arthrospira platensis NIES-39] Length = 70 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 3 NNTGLSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 N L+PI + +V + M +++ QL ++Y WA Y N W+ Sbjct: 16 NKMPLNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 69 >gi|213021870|ref|ZP_03336317.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 277 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 ++ AF E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 7 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDEL 62 >gi|60416888|emb|CAD71206.1| ribonucleoside-diphospate reductase small subunit [Bacillus subtilis] Length = 98 Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 26 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 82 Query: 105 YRHL 108 H+ Sbjct: 83 AEHV 86 >gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex echinatior] Length = 210 Score = 44.8 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 LFN +P + KANWAL + S+ + +R + + F Sbjct: 10 LFNAIETLPCVRKKANWALNWINHESA----TFPERVVAFAAVEGIFF 53 >gi|284051982|ref|ZP_06382192.1| ribonucleoside-diphosphate reductase, beta subunit [Arthrospira platensis str. Paraca] Length = 53 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 7 LSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 L+PI + +V + M +++ QL ++Y WA Y N W+ Sbjct: 3 LNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 52 >gi|256378482|ref|YP_003102142.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827] gi|255922785|gb|ACU38296.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827] Length = 320 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 7/91 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y +++Y + W ++ D W++K +TD ER F +E V Sbjct: 41 EYIDLYKRYFTHR---WNAYDLDFSQDAVDWRTK--MTDVERKAFTEIAAAFHHAERQVE 95 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + I+ + E + YL Q +EA H+ Sbjct: 96 VELP--IFMLTGSEEAKMYLCTQLEDEARHT 124 >gi|229544146|ref|ZP_04433205.1| ribonucleotide reductase [Bacillus coagulans 36D1] gi|229325285|gb|EEN90961.1| ribonucleotide reductase [Bacillus coagulans 36D1] Length = 301 Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 9/110 (8%) Query: 29 SDVNQLLPLKYGW---AWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + Q + + W ++ Y A N W P ++ D + L ++ER+ Sbjct: 3 HERFQTVEGQINWNDPMYKLYEKAKRNGGWNPADIDFSQDREDFLQ---LREEERIASLP 59 Query: 85 NLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQ 132 + F++ E V +I+ ++ E +L +EA H+ F Sbjct: 60 LISSFSAGEEAVTLDILPMLHAMARQGRLEDTMFLTTFLHDEAKHTEMFS 109 >gi|9631114|ref|NP_047784.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] gi|3822382|gb|AAC70333.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] Length = 359 Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 5/130 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + Q+ P KYG +W Y N+W E DD+ L + + R+ Sbjct: 28 GPTGNALQIWPPKYGLSWSFYKDHQANYWSAEEHDPLDDIN---GFVKLPREWQNAALRS 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 A + V I + + E Q E VH + ++ + Sbjct: 85 FAVLAIGDDAVMKFIDESGLEWEESTE--WLFKDQGARETVHKIVYNKMLQLANHSRDYV 142 Query: 146 FNMYREVPSI 155 N + + Sbjct: 143 MNSFTSDDFV 152 >gi|46309416|ref|YP_006306.1| ORF38 [Agrotis segetum granulovirus] gi|46200633|gb|AAS82700.1| ORF38 [Agrotis segetum granulovirus] Length = 369 Score = 43.3 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 7/122 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R+ D N+ + V ++ P Y +W Y N+W TE + L L Sbjct: 19 PRLEEDLPEYNNSETLVLKIWPPTYAPSWHYYQLHQANYWSATE---HEPLEDVSGFIKL 75 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQY 133 + + + A + V I EC Q++ + Q E +H + Sbjct: 76 DSQWQKAVLHSFAILAIGDDAVMQFIDENDLEW---EECTQWMFKDQGARETIHKIVYNK 132 Query: 134 II 135 ++ Sbjct: 133 ML 134 >gi|309806472|ref|ZP_07700477.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV 03V1-b] gi|308167145|gb|EFO69319.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV 03V1-b] Length = 103 Score = 42.9 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 + E + N W+P ++P+ +DL W N L+ D + +I R Sbjct: 23 NMRSINWNKIDDDKDLEVWNRVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFT 79 Query: 88 FFASSESLVA 97 +++ A Sbjct: 80 GLTLLDTIQA 89 >gi|56421306|ref|YP_148624.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|10800082|dbj|BAB16601.1| unnamed protein product [Geobacillus thermoleovorans] gi|56381148|dbj|BAD77056.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus HTA426] Length = 302 Score = 42.9 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA-NNI 100 ++ Y A N W P ++ D + S LT +E++ + F++ E V + + Sbjct: 21 FKLYEKAKRNGKWNPADIDFSQDQKDFAS---LTSEEKISALPLVAGFSAGEEAVTLDIL 77 Query: 101 VLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQ 132 +A E +L +EA H F Sbjct: 78 PMAHALARQGRLEDVLFLTTFMHDEAKHVEMFS 110 >gi|320450283|ref|YP_004202379.1| ribonucleoside-diphosphate reductase subunit beta [Thermus scotoductus SA-01] gi|320150452|gb|ADW21830.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus scotoductus SA-01] Length = 323 Score = 42.1 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y + +++W+ TE D+ + + R +++R+L A S+ Sbjct: 10 RPYEYPRLLAYRDAIRHSYWLHTEFSYAADVQDYALAG---PEVRSLVERSL--LAISQV 64 Query: 95 LVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 ++ + Y PE + + A E H++ + +++ L L E + Sbjct: 65 ELSVKLFWARTYEVFPKPEVAEVGMTFAESEVRHANAYAHLLDLLAL-EDRFAQALEKET 123 Query: 154 SITAKA 159 ++ + Sbjct: 124 ALRERH 129 >gi|9629972|ref|NP_046190.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV] gi|1911280|gb|AAC59033.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV] Length = 349 Score = 42.1 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 5/106 (4%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + Q+ P KYG ++ Y N+W E DD+ L + + + R+ Sbjct: 36 NALQIWPPKYGLSYAFYKDHQANYWSAEEHDPLDDIN---GFVKLPREWQNAVLRSFAVL 92 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 A + V I + + + E Q E VH + ++ Sbjct: 93 AIGDDAVMKFIDESGLKWEESTE--WLFKDQGARETVHKIVYNKML 136 >gi|300710888|ref|YP_003736702.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus jeotgali B3] gi|299124571|gb|ADJ14910.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus jeotgali B3] Length = 297 Score = 42.1 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 +A HW P E+ + D +G T ++R L F + E+ V ++ + Sbjct: 23 NAVERHWDPAEIDLSVDRERLSQLDGAT---FTDLRRTLALFGAGEAAVTEDLA-PLAVV 78 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L E + ++ Q +EEA H+ F ++ E Sbjct: 79 LEGIEDQMFVTTQLYEEAKHADFFDRYWRAVIHPAEE 115 >gi|46255232|ref|YP_006144.1| ribonucleoside-diphosphate reductase beta chain [Thermus thermophilus HB27] gi|46198081|gb|AAS82491.1| ribonucleoside-diphosphate reductase beta chain [Thermus thermophilus HB27] Length = 324 Score = 41.8 bits (97), Expect = 0.045, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + +++W+ TE Q DL + ER +++R L A Sbjct: 7 RLAYRPYEYPELLRFRDAIRHSYWVHTEFSFQSDLQD---HALADEKERSLVERAL--LA 61 Query: 91 SSESLVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 ++ +A + +Y PE + L A E H++ + + Sbjct: 62 IAQVELAVKLFWARVYDRFPKPEIAEVGLTFAESEVRHANAYAH 105 >gi|295398338|ref|ZP_06808380.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973477|gb|EFG49262.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 332 Score = 41.8 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 5/117 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A + W+ T VP+++D + W + L E+ + R L + + +N + I Sbjct: 40 WERATSLFWLDTRVPIENDRSKWAN---LQLQEQEQLNRLLILLTNIATYQSNELGEIIR 96 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKAN 160 + + + F E VH+ + I++ D + F+ P + Sbjct: 97 DSARSQQEIAIINNFQFTEMVHTKAYNRILSIFNQDIGSQKAFDWVDTNPQVRDYIE 153 >gi|220905808|ref|YP_002481119.1| signal transduction histidine kinase, nitrogen specific, NtrB [Cyanothece sp. PCC 7425] gi|219862419|gb|ACL42758.1| signal transduction histidine kinase, nitrogen specific, NtrB [Cyanothece sp. PCC 7425] Length = 1081 Score = 41.8 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 40 GWAWEKYLSACNNHW--MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA+E Y C W P E + D LW S+ D ER++ FF S+ V Sbjct: 344 DWAYEYYSKGCEALWGYTPEE--LMADKNLWLSRLFPEDRERILEPLFTAFFTESKIEV 400 >gi|218296962|ref|ZP_03497648.1| ribonucleotide reductase [Thermus aquaticus Y51MC23] gi|218242665|gb|EED09201.1| ribonucleotide reductase [Thermus aquaticus Y51MC23] Length = 323 Score = 41.4 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + +++W+ TE D+ + +++R+L A Sbjct: 6 RRAYRPYEYPGLLRFRDAIRHSYWVHTEFSYSADVQD---HALAEPPVQSLVERSLLAIA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 E V +Y PE + + A E H++ + +++ LGL+ Sbjct: 63 QVELSVKLFWA-RVYDRFPKPEVAEVGMTFAESEVRHANAYAHLLDLLGLE 112 >gi|88861512|ref|ZP_01136127.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] gi|88816487|gb|EAR26327.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] Length = 219 Score = 41.0 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 5/39 (12%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 H + +++ ++G+ E E ++ + + + K ++ + Sbjct: 1 HVAAYSHLLDTIGMPESE-YSAFMKYKEMKDKYDYMQGF 38 >gi|169842043|ref|ZP_02875148.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7a] Length = 66 Score = 40.6 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%) Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 TF+YII + + E++ S+ KA + +Y + + + Sbjct: 1 MTFEYIIETFPFNREEIYAAGWGKKSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRN 60 Query: 189 SLRF 192 + + Sbjct: 61 LVAY 64 >gi|76802850|ref|YP_330945.1| ribonucleoside-diphosphate reductase, beta subunit 3 [Natronomonas pharaonis DSM 2160] gi|76558715|emb|CAI50308.1| probable ribonucleoside-diphosphate reductase, beta subunit 3 [Natronomonas pharaonis DSM 2160] Length = 316 Score = 40.2 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 45 KYLSACNNHWMP-TEVP---MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + A NHW P ++ ++ D + + E + R L F + E V ++ Sbjct: 22 YFKHAVYNHWDPYEDIEKALIEQDRKRLIDADEFGETEFEDLMRTLALFGAGEEAVTEDL 81 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + + + + ++ Q +EEA H+ F Sbjct: 82 A-PLMLVVDDINDQMFVSSQIYEEAKHTQFF 111 >gi|29135241|ref|NP_803871.1| ORF305 [Pseudomonas phage phiKZ] gi|18996770|gb|AAL83206.1|AF399011_305 PHIKZ305 [Pseudomonas phage phiKZ] Length = 387 Score = 40.2 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 3/151 (1%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 I K + +L + + Y WE Y W E L Sbjct: 9 KKIFNVAKSDYHLPEIILGDDPGLLDSIHTHYPKMWELYKRLKMLDWDELEFDFSTCLVE 68 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +++ + T D M+ + L + ++S+ + +IV + +++ +R E VH Sbjct: 69 FETCDKSTYD---MMIKTLAWQWEADSVASRSIVNILSPVMTDSRVWAGYVRINDNEDVH 125 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAK 158 + T+ I+ + D + + V + Sbjct: 126 ALTYSEIVRNSFKDPKVILDEILRVEEAQER 156 >gi|293556438|ref|ZP_06675016.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291601402|gb|EFF31676.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] Length = 317 Score = 40.2 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A + W+ T +P+++D W+ L+ ER + R L F A+ + + V I Sbjct: 25 WERATSLFWLDTRIPIEEDREKWEK---LSLQERKQLNRLLLFLANLSTYQSIESVEVIR 81 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITA 157 + + L F E V++ + I+ D E F+ P + Sbjct: 82 NSERSQQEIAILNNLQFTEMVNTKAYNRILRVFNKEIDLQEEFDWIDTEPLVRE 135 >gi|328958551|ref|YP_004375937.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328674875|gb|AEB30921.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 328 Score = 39.8 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + + W+ T +P+ ++ + W+ L ++ER + + L AS + + + I Sbjct: 32 WEKLTSLFWLDTRIPVTNEKSQWED---LPENERKVFLKTLAGLASVATFQSERGFMVIE 88 Query: 106 R-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + E Y Q F E+VH+ + I+ + Sbjct: 89 EGEHTQQEAAIYNNIQ-FIESVHAKAYNTILIGFNEPKE 126 >gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] Length = 30 Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 24/26 (92%), Positives = 25/26 (96%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLN 26 MANNTGLSPIQAGEKRVNVDDKR+L Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRILT 26 >gi|14602365|ref|NP_148912.1| ORF128 RR2A [Cydia pomonella granulovirus] gi|14591883|gb|AAK70788.1|U53466_128 ORF128 RR2A [Cydia pomonella granulovirus] Length = 362 Score = 39.1 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 5/107 (4%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + ++ P Y +W + NHW E + + + + + ++ Sbjct: 34 NRLKIWPPTYTPSWNYLVEHQINHWYANE---HKPMDDLNGFDKIDSAWQNALLQSFAVL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 A + V + I + + QA E H + ++ Sbjct: 91 AIGDDKVMDLISNSDIEW--EESTKWMFADQAARETTHKIVYNRMLE 135 >gi|268320098|ref|YP_003293754.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus johnsonii FI9785] gi|262398473|emb|CAX67487.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus johnsonii FI9785] Length = 313 Score = 39.1 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 19/137 (13%) Query: 51 NNHW-MPTE-VPMQD-----DL----------ALWKSKNGLTDDERLMIKRNLGFFASSE 93 N+W E V D+ K L +E+ +I + G S Sbjct: 9 ANNWNTVEEQVDHSAWARLNDIVYEPRRVPIYKDQKEFLHLPKNEQTVILHSFGSLTLSS 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYRE 151 +L + I + N E + E++++ + Y++ + + + + Sbjct: 69 TLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQ 128 Query: 152 VPSITAKANWALQYTQT 168 P + K + Q+ Sbjct: 129 NPYLQKKMKFLNTVYQS 145 >gi|313116866|ref|YP_004037990.1| hypothetical protein Hbor_33300 [Halogeometricum borinquense DSM 11551] gi|312294818|gb|ADQ68854.1| hypothetical protein Hbor_33300 [Halogeometricum borinquense DSM 11551] Length = 317 Score = 38.7 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 42 AWEKYLSACNNHWMP-TEVP---MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 A + +A HW P ++P +++D + + L + + +++ + F + E V Sbjct: 18 AHGYFKNAVYRHWDPSEDIPQTLLKEDRTNLLTTDDLDEQQFDLLRSQIALFGAGEEAVT 77 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 ++ + L + + + ++ Q +EEA H+ F Sbjct: 78 EDLA-PLALVLDDIDAQMFVASQIYEEAKHTQFF 110 >gi|145638051|ref|ZP_01793677.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittHH] gi|145268754|gb|EDK08731.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittHH] Length = 73 Score = 38.7 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 3/67 (4%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + + +V + KY + + W P EV + D + L Sbjct: 10 KNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA---AL 66 Query: 75 TDDERLM 81 + E+ + Sbjct: 67 PEHEKHI 73 >gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1306 Score = 37.9 bits (87), Expect = 0.70, Method: Composition-based stats. Identities = 6/26 (23%), Positives = 10/26 (38%) Query: 169 LSSPSFHYWNKRRRSRILTRSLRFLC 194 + P+FH +L + F C Sbjct: 1123 IMDPNFHTGTSESDQVLLKSLIVFAC 1148 >gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus] Length = 150 Score = 37.9 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 4/41 (9%) Query: 152 VPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 +P + KA+WAL++ + + +R + + F Sbjct: 1 MPCVKKKADWALRWIGDKEA----AYGERVVAFAAVEGIFF 37 >gi|66394974|ref|YP_240948.1| ORF025 [Staphylococcus phage G1] gi|62636996|gb|AAX92107.1| ORF025 [Staphylococcus phage G1] Length = 265 Score = 37.9 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 9/100 (9%) Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSI 155 N+V P+ + E +H+ ++ +I T+L ++ + E + Sbjct: 2 NLVSYHEPR---PKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFL 58 Query: 156 TAKANWALQYTQTLSSPS---FHYWNKRRRSRILTRSLRF 192 KA + Y L P+ F + + S L +L + Sbjct: 59 KVKAQFIGYYYDQLLKPNPTIFDRYMAKVASAFLESALFY 98 >gi|289626815|ref|ZP_06459769.1| hypothetical protein PsyrpaN_16994 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646516|ref|ZP_06477859.1| hypothetical protein Psyrpa2_02015 [Pseudomonas syringae pv. aesculi str. 2250] gi|298487769|ref|ZP_07005810.1| FF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157861|gb|EFH98940.1| FF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869032|gb|EGH03741.1| hypothetical protein PSYAE_17635 [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 37.5 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 108 LSNPECRQYLLRQAFEEAVHSHT---FQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 + +PE + + +EA+HS + +I + GL ++ ++ + IT K W + Sbjct: 79 IEDPELIEKIDGLVAQEAIHSREHRRYNALIEAAGLPVDQIIRGWQTLYGITQK-RWVAR 137 Query: 165 YTQTLSSPSFHYWNKRRRSRILT 187 + + + + S++L Sbjct: 138 WFRLATVMMLEHHTAAASSKLLK 160 >gi|71737549|ref|YP_275476.1| hypothetical protein PSPPH_3317 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558102|gb|AAZ37313.1| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 37.5 bits (86), Expect = 0.90, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 108 LSNPECRQYLLRQAFEEAVHSHT---FQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 + +PE + + +EA+HS + +I + GL ++ ++ + IT K W + Sbjct: 79 IEDPELIEKIDGLVAQEAIHSREHRRYNALIEAAGLPVDQIIRGWQTLYGITQK-RWVAR 137 Query: 165 YTQTLSSPSFHYWNKRRRSRILT 187 + + + + S++L Sbjct: 138 WFRLATVMMLEHHTAAASSKLLK 160 >gi|320323987|gb|EFW80071.1| hypothetical protein PsgB076_16942 [Pseudomonas syringae pv. glycinea str. B076] gi|320328123|gb|EFW84128.1| hypothetical protein PsgRace4_22183 [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 37.5 bits (86), Expect = 0.90, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 108 LSNPECRQYLLRQAFEEAVHSHT---FQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 + +PE + + +EA+HS + +I + GL ++ ++ + IT K W + Sbjct: 79 IEDPELIEKIDGLVAQEAIHSREHRRYNALIEAAGLPVDQIIRGWQTLYGITQK-RWVAR 137 Query: 165 YTQTLSSPSFHYWNKRRRSRILT 187 + + + + S++L Sbjct: 138 WFRLATVMMLEHHTAAASSKLLK 160 >gi|330876080|gb|EGH10229.1| hypothetical protein Pgy4_09373 [Pseudomonas syringae pv. glycinea str. race 4] Length = 299 Score = 37.5 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 108 LSNPECRQYLLRQAFEEAVHSHT---FQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 + +PE + + +EA+HS + +I + GL ++ ++ + IT K W + Sbjct: 80 IEDPELIEKIDGLVAQEAIHSREHRRYNALIEAAGLPVDQIIRGWQTLYGITQK-RWVAR 138 Query: 165 YTQTLSSPSFHYWNKRRRSRILT 187 + + + + S++L Sbjct: 139 WFRLATVMMLEHHTAAASSKLLK 161 >gi|186684872|ref|YP_001868068.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467324|gb|ACC83125.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 1102 Score = 37.5 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 16 RVNVDDKRMLNAR--SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 R VD + + + SD QL P + W + A W E+ + D+ Sbjct: 357 RNEVDTETLWAGQYDSDQRQLYPRRSFEVWRESKKAQAQKWTVEEIELARDI 408 >gi|52550536|gb|AAU84385.1| transposase [uncultured archaeon GZfos9E5] Length = 398 Score = 37.1 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWA--------WEKYLSACNNHWMPTEVPM 61 I+ G + + + + + R+ L L E Y A W +V + Sbjct: 81 IENGTEVLRLRKRGVPAPRTVRYHLEKLVIDDILSQFNGISEELYRIAKKQRWFVNKVDL 140 Query: 62 QDDLALWKSKNGLTDD 77 D+ W + D+ Sbjct: 141 SIDIHDWMYYGDIDDE 156 >gi|213855388|ref|ZP_03383628.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 108 Score = 36.7 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 KY + + W P EV + D ++ L + E+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEK 71 >gi|227902816|ref|ZP_04020621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus acidophilus ATCC 4796] gi|227869479|gb|EEJ76900.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus acidophilus ATCC 4796] Length = 326 Score = 36.7 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P VP+++D K L R + + S L + + I PE Sbjct: 31 WEPRHVPVKEDK---KEFLQLPSPVRCTLLHVFSALSFSSGLQMKSGIEQIKVDAITPEE 87 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158 L + E++ + ++ Y++ L E F+ P + K Sbjct: 88 AAVLNALQYLESIANKSYSYVLRELATPEEVDNAFDWANNSPYLQKK 134 >gi|58338007|ref|YP_194592.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus acidophilus NCFM] gi|58255324|gb|AAV43561.1| ribonucleotide reductase [Lactobacillus acidophilus NCFM] Length = 311 Score = 36.7 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P VP+++D K L R + + S L + + I PE Sbjct: 31 WEPRHVPVKEDK---KEFLQLPSPVRCTLLHVFSALSFSSGLQMKSGIEQIKVDAITPEE 87 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158 L + E++ + ++ Y++ L E F+ P + K Sbjct: 88 AAVLNALQYLESIANKSYSYVLRELATPEEVDNAFDWANNSPYLQKK 134 >gi|330861133|emb|CBX71396.1| ribonucleoside-diphosphate reductase 2 subunit beta [Yersinia enterocolitica W22703] Length = 239 Score = 36.7 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQT 168 P +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 5 PHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHYNN 64 >gi|198420723|ref|XP_002119538.1| PREDICTED: similar to RFT1 homolog [Ciona intestinalis] Length = 556 Score = 36.4 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 71 KNGLTDDERLM--IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 K LT+ ER + I L F V NN+ + R + P + L A Sbjct: 271 KQILTEGERYVMTILNVLSFADQGVYDVINNLGSLVARFIFLPIEESFYLFFA 323 >gi|42519734|ref|NP_965664.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus johnsonii NCC 533] gi|41584023|gb|AAS09630.1| hypothetical protein LJ_0591 [Lactobacillus johnsonii NCC 533] Length = 313 Score = 36.4 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 19/127 (14%) Query: 51 NNHW-MPTE-VPMQD-----DL----------ALWKSKNGLTDDERLMIKRNLGFFASSE 93 N+W E V D+ K L +E+ +I + G S Sbjct: 9 ANNWNTVEEQVDRSAWARLNDIVYEPRRVPIYKDQKEFLHLPKNEQTVILHSFGSLTLSS 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYRE 151 +L + I + N E + E++++ + Y++ + + + + Sbjct: 69 TLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQ 128 Query: 152 VPSITAK 158 P + K Sbjct: 129 NPYLQKK 135 >gi|330718348|ref|ZP_08312948.1| ribonucleoside-diphosphate reductase beta subunit [Leuconostoc fallax KCTC 3537] Length = 94 Score = 36.4 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + N W+ T VP+ +D W+ L DE + ++L A+ ES + Sbjct: 24 WQQMVANFWLDTRVPVIEDKTGWE---ALAQDEHDALAQSLADLATLESFQSE 73 >gi|313125821|ref|YP_004036091.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM 11551] gi|312292186|gb|ADQ66646.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM 11551] Length = 297 Score = 36.4 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN---LGFFASSESLVAN 98 A + A HW P E+ + D + ++D R + + F + E V Sbjct: 24 AERYFRHATERHWSPYEIDLAAD------RAAISDLGRSAFTQLRATIAMFGAGEENVTE 77 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 ++V + +N ++++ +EEA H+ F+ Sbjct: 78 DLV-PLAATTTNKTDQRFVASHIYEEAKHAAFFE 110 >gi|284167352|ref|YP_003405630.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511] gi|284017007|gb|ADB62957.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511] Length = 296 Score = 36.4 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 24/177 (13%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + E V+ + LN ++Y HW P + ++ D ++ Sbjct: 10 SEESPVSPLESSGLNEHPKRLVRSAIEY-------------HWDPAAIDVRADQ---EAV 53 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + L+ E ++ L F + E V ++ + L + ++Y+ Q ++EA H+ F Sbjct: 54 SELSRVEFTRLRGLLAQFGAGERAVTTDLA-PLAVVLDGSDEQRYIATQLYDEARHTELF 112 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 + E E + P A +++ F + + Sbjct: 113 DRYWKRVIRPEEESRGLIPTEP-------MADRWSHDDYRELFDRTSNAMARLLERD 162 >gi|329667981|gb|AEB93929.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus johnsonii DPC 6026] Length = 313 Score = 36.4 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 19/127 (14%) Query: 51 NNHW-MPTE-VPMQD-----DL----------ALWKSKNGLTDDERLMIKRNLGFFASSE 93 N+W E V D+ K L +E+ +I + G S Sbjct: 9 ANNWNTVEEQVDRSAWARLNDIVYEPRRVPIYKDQKEFLHLPKNEQTVILHSFGSLTLSS 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYRE 151 +L + I + N E + E++++ + Y++ + + + + Sbjct: 69 TLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQ 128 Query: 152 VPSITAK 158 P + K Sbjct: 129 NPYLQKK 135 >gi|213023521|ref|ZP_03337968.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 256 Score = 36.4 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFN 147 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 1 TLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYA 60 Query: 148 MYREVPSITAKANWAL 163 E P + KA L Sbjct: 61 WSEENPPLQRKAQIIL 76 >gi|322419393|ref|YP_004198616.1| peptidase S10 serine carboxypeptidase [Geobacter sp. M18] gi|320125780|gb|ADW13340.1| peptidase S10 serine carboxypeptidase [Geobacter sp. M18] Length = 510 Score = 36.4 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 10/75 (13%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA--SSESLVANNIVLA 103 + A W +E + D LTD ER ++ L F S + + N+ + Sbjct: 284 WTLAQAEQWAGSEYQLALDKGD-----RLTDAERKIVAEKLASFTGLSVDFIQNRNLRIE 338 Query: 104 ---IYRHLSNPECRQ 115 R L E R Sbjct: 339 NRDFARELLRAEGRM 353 >gi|157105736|ref|XP_001649004.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti] gi|108880035|gb|EAT44260.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti] Length = 556 Score = 35.6 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 12/68 (17%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT-EV 59 M NT + +Q E R+ D + P K+ +W Y W+P ++ Sbjct: 403 MTENTDWNLVQLPEIRIAAIDNGLA---------FPFKHPDSWRAYPYHWA--WLPQAKI 451 Query: 60 PMQDDLAL 67 P D+ Sbjct: 452 PFSQDIKD 459 >gi|227889328|ref|ZP_04007133.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus johnsonii ATCC 33200] gi|227850130|gb|EEJ60216.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus johnsonii ATCC 33200] Length = 313 Score = 35.6 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 19/127 (14%) Query: 51 NNHW-MPTE-VPMQD-----DL----------ALWKSKNGLTDDERLMIKRNLGFFASSE 93 N+W E V D+ K L +E+ +I + G S Sbjct: 9 ANNWNTVEEQVDRSAWARLNDIVYEPCRVPIYKDQKEFLHLPRNEQTVILHSFGSLTLSS 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYRE 151 +L + I + N E + E++++ + Y++ + + + + Sbjct: 69 TLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQ 128 Query: 152 VPSITAK 158 P + K Sbjct: 129 NPYLQKK 135 >gi|238853136|ref|ZP_04643525.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|238834244|gb|EEQ26492.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] Length = 330 Score = 35.6 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ D + + L E+ M+ + G A S +L + I + N E Sbjct: 34 PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90 Query: 116 YLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYREVPSITAK 158 + E++++ + + + ++ E FN + P + K Sbjct: 91 VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKK 136 >gi|300362937|ref|ZP_07059107.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] gi|300352987|gb|EFJ68865.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] Length = 314 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ D + + L E+ M+ + G A S +L + I + N E Sbjct: 34 PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90 Query: 116 YLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYREVPSITAK 158 + E++++ + + + ++ E FN + P + K Sbjct: 91 VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKK 136 >gi|167746723|ref|ZP_02418850.1| hypothetical protein ANACAC_01434 [Anaerostipes caccae DSM 14662] gi|167653683|gb|EDR97812.1| hypothetical protein ANACAC_01434 [Anaerostipes caccae DSM 14662] Length = 242 Score = 35.6 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS---NPECRQYLLRQAFE 123 + + LTD ER +I ++ F E +++ + ++ PE R+ +L E Sbjct: 32 DFSKELPLTDSERRLITPSVRAFQKGEGSDGRHLMNTVEAYIHQHGAPEYREAMLWFIKE 91 Query: 124 EAVHSH 129 E HS Sbjct: 92 ENWHSA 97 >gi|83765032|dbj|BAE55175.1| unnamed protein product [Aspergillus oryzae] Length = 473 Score = 35.2 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 14/96 (14%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 KY W + N W P E PM + L ++N L DE +G F Sbjct: 26 NFKYRDVWGPREKSMANPWSP-ETPMGRSIILRLAENSLLHDE-------MGQFIK---E 74 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAF---EEAVHS 128 N + L+ + + P L R A E HS Sbjct: 75 QINVLPLSHLTYSTGPRGSCRLRRAAAAFLNEEFHS 110 >gi|76803161|ref|YP_331256.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natronomonas pharaonis DSM 2160] gi|76559026|emb|CAI50624.1| probable ribonucleoside-diphosphate reductase, beta subunit 2 [Natronomonas pharaonis DSM 2160] Length = 306 Score = 35.2 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN---LGFFASSESLVANNIV 101 Y +A HW P ++ + D K+ TD + + F + E V ++ Sbjct: 20 YYRNAVERHWDPHDIELDTDRENLKAFLDSTDTPETYLDGLRSGVARFGAGEQAVTEDLA 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + L + + + ++ Q +EEA H+ F Sbjct: 80 -PLATALGSIDDQMFVTTQIYEEAKHTDFF 108 >gi|195451115|ref|XP_002072774.1| GK13780 [Drosophila willistoni] gi|194168859|gb|EDW83760.1| GK13780 [Drosophila willistoni] Length = 838 Score = 35.2 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76 P K+ +W Y W+P +VP +D+ L+D Sbjct: 713 FPFKHPDSWRAYPYHWA--WLPQAKVPFSEDIKD-HVLPQLSD 752 >gi|195391948|ref|XP_002054621.1| GJ22707 [Drosophila virilis] gi|194152707|gb|EDW68141.1| GJ22707 [Drosophila virilis] Length = 857 Score = 35.2 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76 P K+ +W Y W+P +VP DD+ + L+D Sbjct: 732 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 771 >gi|195062926|ref|XP_001996279.1| GH22280 [Drosophila grimshawi] gi|193899774|gb|EDV98640.1| GH22280 [Drosophila grimshawi] Length = 756 Score = 35.2 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76 P K+ +W Y W+P +VP DD+ + L+D Sbjct: 631 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 670 >gi|260662380|ref|ZP_05863275.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum 28-3-CHN] gi|260553071|gb|EEX26014.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum 28-3-CHN] Length = 306 Score = 34.8 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 8/109 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLA 103 +L NN W+ T VP+ DD W LT ++ + L A + + L Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYRE 151 R E L+ F E+VH+ I L +E + + Sbjct: 80 AGRRTQQEEAVLNLI--TFMESVHTKAVTTIFRRLTDEETTAAYYAWAN 126 >gi|289580515|ref|YP_003478981.1| ribonucleoside-diphosphate reductase subunit beta 2 [Natrialba magadii ATCC 43099] gi|289530068|gb|ADD04419.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natrialba magadii ATCC 43099] Length = 310 Score = 34.8 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD-ERLMIKRNL---GFFASSESLVANNI 100 Y +A HW P E+ ++ D+ + +D+ ++ R L F + E V ++ Sbjct: 20 YYRNAVERHWDPGEIELEQDVENLLAHIEASDEYDQSYWDRTLNGIAKFGAGEDAVTEDL 79 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + L N + + +L Q +EEA H+ F Sbjct: 80 A-PLATVLDNIDDQLFLTTQLYEEAKHADFF 109 >gi|299783626|gb|ADJ41624.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 306 Score = 34.8 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLA 103 +L NN W+ T VP+ DD W LT ++ + L A + + L Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHT 130 R E L+ F E+VH+ Sbjct: 80 AGRRTQQEEAVLNLI--TFMESVHTKA 104 >gi|184156149|ref|YP_001844489.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|183227493|dbj|BAG28009.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] Length = 306 Score = 34.8 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLA 103 +L NN W+ T VP+ DD W LT ++ + L A + + L Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHT 130 R E L+ F E+VH+ Sbjct: 80 AGRRTQQEEAVLNLI--TFMESVHTKA 104 >gi|227515316|ref|ZP_03945365.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus fermentum ATCC 14931] gi|227086330|gb|EEI21642.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus fermentum ATCC 14931] Length = 306 Score = 34.8 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLA 103 +L NN W+ T VP+ DD W LT ++ + L A + + L Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHT 130 R E L+ F E+VH+ Sbjct: 80 AGRRTQQEEAVLNLI--TFMESVHTKA 104 >gi|294138851|ref|YP_003554829.1| lysophospholipase L2 [Shewanella violacea DSS12] gi|293325320|dbj|BAJ00051.1| lysophospholipase L2 [Shewanella violacea DSS12] Length = 322 Score = 34.4 bits (78), Expect = 8.2, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 19/78 (24%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY-----R 106 NHW+ + + L + R L A +++V +N+ + Sbjct: 238 NHWLVESIDVG---------PKLVEAARHSTTSILILQAEMDTVV-DNLAQNHAVGGQCQ 287 Query: 107 HLSNPECRQYLLRQAFEE 124 + P R + F E Sbjct: 288 LVKIPNAR----HEIFME 301 >gi|317138971|ref|XP_001817177.2| hypothetical protein AOR_1_104174 [Aspergillus oryzae RIB40] Length = 427 Score = 34.4 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 14/96 (14%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 KY W + N W P E PM + L ++N L DE +G F Sbjct: 26 NFKYRDVWGPREKSMANPWSP-ETPMGRSIILRLAENSLLHDE-------MGQFIK---E 74 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAF---EEAVHS 128 N + L+ + + P L R A E HS Sbjct: 75 QINVLPLSHLTYSTGPRGSCRLRRAAAAFLNEEFHS 110 >gi|162454691|ref|YP_001617058.1| hypothetical protein sce6411 [Sorangium cellulosum 'So ce 56'] gi|161165273|emb|CAN96578.1| hypothetical protein sce6411 [Sorangium cellulosum 'So ce 56'] Length = 399 Score = 34.4 bits (78), Expect = 8.5, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 15/41 (36%) Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +N + + ++P R A E H ++ II Sbjct: 203 QTHNYYVNVGPFFTDPVARLLYAEIASIEEQHVTQYEAIID 243 >gi|315427780|dbj|BAJ49374.1| conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum] Length = 342 Score = 34.4 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 11/91 (12%) Query: 69 KSKNGLTDDERLMIKRNLGFFASSESL--VANNIVLAIYRHLSNPECRQY-----LLRQA 121 ++ +G T +ER ++R ++ + N +V L E + ++R A Sbjct: 90 RADDGFTPEERRELRRIASELVGADIMEDAQNRMVFRFLTKLD--EENFFDRLTRMMRFA 147 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +E +H T+Q + + E+ EV Sbjct: 148 YE--IHRDTYQILRERNISNAAEIVERIGEV 176 >gi|147906731|ref|NP_001087751.1| cytoglobin [Xenopus laevis] gi|51703934|gb|AAH81170.1| MGC84306 protein [Xenopus laevis] gi|62176946|emb|CAG25615.1| cytoglobin [Xenopus laevis] Length = 179 Score = 34.4 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 +V ++D+ W+ +T+ ER +IK ++ V +I++ + ++ P +Q+ Sbjct: 2 EKVQGENDMERWERLEEITESERGVIKETWARVYANCEDVGVSILIRFF--VNFPSAKQH 59 Query: 117 LLRQAFEE 124 + E Sbjct: 60 FSQFKHME 67 >gi|227894062|ref|ZP_04011867.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ultunensis DSM 16047] gi|227864144|gb|EEJ71565.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ultunensis DSM 16047] Length = 269 Score = 34.4 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 5/117 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P VP+++D K L ++ + R G A + L + I + PE Sbjct: 31 WEPRHVPVKEDQ---KEFLKLDKPKQTAVLRAFGSLALASGLQMRIGLDQIKQDAITPEE 87 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQT 168 L + E++ + + Y+I LG+D+ E F+ + K + + Q+ Sbjct: 88 SAVLNALQYLESIANKGYSYVIHELGIDDDVQETFDWANNNYYLQRKIHILNKIYQS 144 >gi|227431036|ref|ZP_03913097.1| HesA/MoeB/ThiF family protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353228|gb|EEJ43393.1| HesA/MoeB/ThiF family protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 344 Score = 34.0 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 11/101 (10%) Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + + I R + E ++ + S +F+ + L E EL +M + Sbjct: 11 DGIRVGGYQANITREIYVDEVEKFYSLMTDMDG--SQSFEKLKEKYNLTEMELLSMIESL 68 Query: 153 PSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRFL 193 + PS + + + F Sbjct: 69 K---------NSGILYKNDPSEYSFTDEEKKIYSRNLNFFA 100 >gi|55742013|ref|NP_001006870.1| cytoglobin [Xenopus (Silurana) tropicalis] gi|49903543|gb|AAH76983.1| cytoglobin [Xenopus (Silurana) tropicalis] Length = 179 Score = 34.0 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 +V ++D+ W+ +T+ ER +IK ++ V +I++ + ++ P +Q+ Sbjct: 2 EKVQGENDMERWERLEEITESERGVIKETWARVYANCEDVGVSILIRFF--VNFPSAKQH 59 Query: 117 LLRQAFEE 124 + E Sbjct: 60 FSQFKHME 67 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.314 0.156 0.491 Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,212,138,080 Number of Sequences: 13984884 Number of extensions: 199451044 Number of successful extensions: 390539 Number of sequences better than 10.0: 2646 Number of HSP's better than 10.0 without gapping: 3517 Number of HSP's successfully gapped in prelim test: 1124 Number of HSP's that attempted gapping in prelim test: 381560 Number of HSP's gapped (non-prelim): 4812 length of query: 196 length of database: 4,792,584,752 effective HSP length: 132 effective length of query: 64 effective length of database: 2,946,580,064 effective search space: 188581124096 effective search space used: 188581124096 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 78 (34.4 bits)