RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.74_1
         (196 letters)



>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
           ribonucleotide reductase, dinuclear metal-cluster; 2.2A
           {Mus musculus} (A:1-218)
          Length = 218

 Score =  148 bits (374), Expect = 5e-37
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
              +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L
Sbjct: 64  TNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---L 120

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 121 KPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 180

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQ 167
           I +   D  E   LFN    +P +  KA+WAL++  
Sbjct: 181 IDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIG 216


>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
           oxidoreductase; 1.42A {Escherichia coli} (A:)
          Length = 375

 Score =  143 bits (361), Expect = 2e-35
 Identities = 31/182 (17%), Positives = 71/182 (39%), Gaps = 4/182 (2%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   +++  
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA-- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192
           +II ++  D   +F+       I  +A     Y   L   + ++      +  +      
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 193 LC 194
           + 
Sbjct: 184 VS 185


>2p1i_A Ribonucleotide reductase, small chain; F222 twinning,
           plasmodb PY03671, structural genomics consortium, SGC,
           oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
           (A:1-161)
          Length = 161

 Score =  141 bits (357), Expect = 5e-35
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 12/164 (7%)

Query: 1   MANNTGLSPIQA---------GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACN 51
           MA    +S   +           ++    ++++LN  S+   L P+ Y   W  Y  A  
Sbjct: 1   MAEVVNISKSASFSKQEKEFSDFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEA 60

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           + W   E+ +  DL  ++    L  +E+  IK  L FFA+S+ +V  N+     R +   
Sbjct: 61  SFWTAEEIDLSSDLKDFEK---LNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEII 117

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           E +++   Q   E +HS T+  +I +   DE E  N++  + +I
Sbjct: 118 EAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENI 161


>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON,
           oxygen activation, iron coupled radical, immune evasion,
           replication; 1.70A {Chlamydia trachomatis} (A:)
          Length = 346

 Score =  134 bits (337), Expect = 9e-33
 Identities = 95/183 (51%), Positives = 131/183 (71%), Gaps = 2/183 (1%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ L
Sbjct: 5   ILDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIEL 64

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WKS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH
Sbjct: 65  WKS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVH 123

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILT 187
           +HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F   +       + 
Sbjct: 124 THTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVK 183

Query: 188 RSL 190
             +
Sbjct: 184 NLV 186


>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} (A:104-227)
          Length = 124

 Score =  130 bits (327), Expect = 2e-31
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P+KY   W+ Y  A  + W   E+ +  D+  W ++  + ++ER  I R L FFA+S
Sbjct: 4   VLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERFFISRVLAFFAAS 61

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           + +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   ++  +
Sbjct: 62  DGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAI 121

Query: 153 PSI 155
            +I
Sbjct: 122 HTI 124


>2o1z_A Ribonucleotide reductase subunit R2; small subunit
           ribonucleotide reductase, oxidoreductase, DNA
           replication, iron, DIIRON, radical, R2 subunit; 2.40A
           {Plasmodium vivax} (A:38-160)
          Length = 123

 Score =  125 bits (315), Expect = 4e-30
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L D+E+  IK  L FFA+S
Sbjct: 4   TLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKHFIKHVLAFFAAS 60

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           + +V  N+     R +   E +++   Q   E +HS T+  +I +   DE E  N++  +
Sbjct: 61  DGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAI 120

Query: 153 PSI 155
            +I
Sbjct: 121 ENI 123


>1r2f_A Protein (ribonucleotide reductase R2); nucleotide
           metabolism, oxidoreductase; 2.10A {Salmonella
           typhimurium} (A:1-128)
          Length = 128

 Score =  123 bits (311), Expect = 1e-29
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M  +R        ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  
Sbjct: 1   MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTI 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE- 142
           R        +++       ++      P     L   +F EAVH+ ++  I ++L   + 
Sbjct: 58  RVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKE 117

Query: 143 -GELFNMYRE 151
               +    E
Sbjct: 118 VDAAYAWSEE 127


>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} (B:33-146)
          Length = 114

 Score =  120 bits (302), Expect = 1e-28
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I   L    SS+
Sbjct: 5   MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 61

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
           +LV   ++      L NPE + +   Q   E ++S  +  ++ +   D   
Sbjct: 62  NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKN 112


>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen
           bond, metal binding protein; 1.63A {Corynebacterium
           ammoniagenes} (A:21-138)
          Length = 118

 Score =  117 bits (295), Expect = 1e-27
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +     N W+P ++P+ +D+  W     +T  E+L   R        +++ 
Sbjct: 4   IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 60

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYRE 151
                +++                AF E+VH+ ++  I  +L       E F    E
Sbjct: 61  GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEE 117


>2rcc_A Ribonucleoside-diphosphate reductase subunit beta;
           NP_241368.1, putative class I ribonucleotide reductase,
           ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
           {Bacillus halodurans c-125} (A:1-149)
          Length = 149

 Score =  114 bits (287), Expect = 8e-27
 Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +     +LN + S+V     +++ WA+  Y +   N W P E+    D   + +  
Sbjct: 12  DTTASNASTGILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT-- 69

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT+ E+   K+ +G  A  +S+  +        +L++          +F+E VH+ ++ 
Sbjct: 70  -LTETEQEAFKKIIGLLAFLDSVQTDYSX-RAAEYLTDSSLAALXSVLSFQEVVHNQSYS 127

Query: 133 YIITSLGLDE--GELFNMYRE 151
           Y+++SL       E+F  ++ 
Sbjct: 128 YVLSSLVPKATQDEIFEYWKH 148


>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese,
           iron, DIIRON, carboxylate, oxidase, ligand, cavity,
           monooxygenase; HET: MYR; 1.90A {Mycobacterium
           tuberculosis} (A:)
          Length = 323

 Score =  104 bits (260), Expect = 8e-24
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 13/161 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++               +     +             + +       W P ++    D A
Sbjct: 1   MAHHHHHHGMTRTRSGSLAAGGLNWAS-------LPLKLFAGGNAKFWHPADIDFTRDRA 53

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNPECRQYLLRQAFEE 124
            W+    L+DDER    R    F + E  V  +I   ++  R         YL + AFEE
Sbjct: 54  DWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEE 110

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
           A H+  F+  + ++G+ E +L     ++P+        L  
Sbjct: 111 AKHTQVFRMWLDAVGISE-DLHRYLDDLPAYRQIFYAELPE 150


>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase,
           oxidoreductase; 2.00A {Streptomyces thioluteus} PDB:
           3chi_A 3cht_A* 3chu_A 2jcd_A (A:)
          Length = 336

 Score = 89.9 bits (222), Expect = 2e-19
 Identities = 15/169 (8%), Positives = 46/169 (27%), Gaps = 23/169 (13%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLS-------ACNNHWMPTEVPMQDDL 65
            R  V+++ + +A   + +L+    +      K                 P E+    + 
Sbjct: 14  ARGWVEEEGIGSA--TLGRLVRAWPRRAAVVNKADILDEWADYDTLVPDYPLEIVPFAEH 71

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA---------IYRHLSNPECRQY 116
            L+         +R  +   +    +   +    ++           ++    +P  R+ 
Sbjct: 72  PLF---LAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKS 128

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
           + +   +E+ H++     I              +       +    L  
Sbjct: 129 VQQAIVDESFHTYMHMLAIDRTRELRKISERPPQPELVTYRRLRRVLAD 177


>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
           monooxygenase; 1.70A {Methylococcus capsulatus str}
           (D:1-248)
          Length = 248

 Score = 32.9 bits (75), Expect = 0.027
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 1/101 (0%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y              +Q  L    +   +       +K    F    E   A      ++
Sbjct: 53  YARMEAVKDERQFGSLQVALTRLNAGVRVHPKWNETMKVVSNFLEVGE-YNAIAATGMLW 111

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
                 E +   L Q  +E  H+H   Y+      +  +  
Sbjct: 112 DSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPA 152


>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} (B:147-345)
          Length = 199

 Score = 32.2 bits (73), Expect = 0.044
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 145 LFNMYREVPSITAKANWALQYTQ 167
           LF     +P +  KA +  ++  
Sbjct: 1   LFKEIANLPEVKHKAAFIERWIS 23


>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus
           furiosus} (A:)
          Length = 345

 Score = 30.3 bits (68), Expect = 0.17
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 6/109 (5%)

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
              +  +   L     +E   A N+   + R+  +   R+ LL  A EE  H   F  ++
Sbjct: 14  PYTKEELMEILRLAIIAEL-DAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALL 72

Query: 136 TSLGLDEGELFNMYR-EVPSITAKANWALQYTQTLSSP----SFHYWNK 179
            +L  ++         EV  +T          +  S+            
Sbjct: 73  LNLDPEQVTELKGGFEEVKELTGIEAHINDNKKEESNVEYFEKLRSALL 121


>2wfo_A Glycoprotein 1, MACV-GP1; arenavirus, NEW world arenavirus,
           hemorrhagic fever virus, envelope protein, junin,
           guanarito, sabia, chapare, virion; HET: NAG; 1.73A
           {Machupo virus} (A:)
          Length = 182

 Score = 27.9 bits (62), Expect = 1.1
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI-----TAKANWALQYTQTLSSP 172
           L     ++  S    +   +LG D    + M    P +     T K    +Q+  + +  
Sbjct: 46  LGNCLNKSDSSWAIHWFSIALGHD----WLMD---PPMLCRNKTKKEGSNIQFNISKADE 98

Query: 173 SFHYWNK 179
           S  Y  K
Sbjct: 99  SRVYGKK 105


>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible
           solutes, cation-PI interactions, non-classical hydrogen
           bonds; 1.80A {Archaeoglobus fulgidus dsm 4304}
           (A:1-110,A:209-275)
          Length = 177

 Score = 26.3 bits (58), Expect = 3.2
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
           T  + I   +     D + + +    V + L    G      L   ++  +P
Sbjct: 66  TAYNVILRKQPPELWDQQYIFDE---VKKGLLEADGVVVAAKLGFRDDGALP 114


>1qap_A Quinolinic acid phosphoribosyltransferase;
           glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A
           {Salmonella typhimurium} (A:1-142,A:286-296)
          Length = 153

 Score = 26.1 bits (57), Expect = 3.5
 Identities = 6/63 (9%), Positives = 14/63 (22%), Gaps = 3/63 (4%)

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171
              + QA  E +          +  L   +      +      +     W  +    L+ 
Sbjct: 23  PAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAG 82

Query: 172 PSF 174
              
Sbjct: 83  DDV 85


>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A
           {Rice dwarf virus}
           (A:1-141,A:230-245,A:658-772,A:963-971)
          Length = 281

 Score = 25.8 bits (56), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 88  FFASSESLVANNIVLAIYRHLSN 110
           FFA  E ++   ++ A+Y  LSN
Sbjct: 162 FFAGGEDILILQLIRAVYDTLSN 184


>2fzf_A Hypothetical protein; structural genomics, southeast
           collaboratory for structural genomics, secsg, protein
           structure initiative, PSI; 2.70A {Pyrococcus furiosus}
           (A:1-90)
          Length = 90

 Score = 25.6 bits (56), Expect = 4.6
 Identities = 5/46 (10%), Positives = 16/46 (34%)

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           A     ++   +     ++ +   A EE  H    + + + +   +
Sbjct: 35  AREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGK 80


>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase,
           seattle structural genomics center for infectious
           disease, ssgcid; HET: PGE; 1.75A {Burkholderia
           pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A*
           3eiz_A* (A:)
          Length = 196

 Score = 24.8 bits (54), Expect = 7.5
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS-------ITAKANWA 162
           +      L  Q   +   S +F  +    G D  + FN+  E+P+          KA   
Sbjct: 5   HHHHMGTLEAQ--TQGPGSMSFSNV--PAGKDLPQDFNVIIEIPAQSEPVKYEADKALGL 60

Query: 163 LQYTQTLSSPSFHYWNKRRRSRIL 186
           L   + + +   +  N     + L
Sbjct: 61  LVVDRFIGTGMRYPVNYGFIPQTL 84


>3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2,
          NYSGXRC, target 9462A, protein structure initiative;
          1.87A {Bdellovibrio bacteriovorus HD100} (A:96-310)
          Length = 215

 Score = 24.7 bits (53), Expect = 8.3
 Identities = 4/38 (10%), Positives = 7/38 (18%)

Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
          D N L   +    +   L       +            
Sbjct: 60 DFNALGSWQTFEKFMVNLPLTVRPLIEYVEDPFPFDFH 97


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,517,667
Number of extensions: 64625
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 28
Length of query: 196
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 112
Effective length of database: 2,116,429
Effective search space: 237040048
Effective search space used: 237040048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)