RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.74_1
(196 letters)
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
activation, iron coupled radical, immune evasion,
replication; 1.70A {Chlamydia trachomatis} SCOP:
a.25.1.2 PDB: 2ani_A
Length = 346
Score = 164 bits (415), Expect = 1e-41
Identities = 95/186 (51%), Positives = 133/186 (71%), Gaps = 2/186 (1%)
Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW
Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188
HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F + +
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184
Query: 189 SLRFLC 194
+ +
Sbjct: 185 LVGYYI 190
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 152 bits (384), Expect = 6e-38
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +LN + L P+KY W+ Y A + W E+ + D+ W ++ + ++ER
Sbjct: 95 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERF 152
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 153 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 212
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192
D E LFN +P I KA WAL++ Q + + +R + + F
Sbjct: 213 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ----DADALFGERLVAFASIEGVFF 263
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Length = 345
Score = 142 bits (359), Expect = 4e-35
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
+ P+KY W Y + W E+ + D ++ LTDD++ I L SS+
Sbjct: 37 MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 93
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYRE 151
+LV ++ L NPE + + Q E ++S + ++ + D LF
Sbjct: 94 NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 153
Query: 152 VPSITAKANWALQYTQTLSSPSFHYWN 178
+P + KA + ++ S
Sbjct: 154 LPEVKHKAAFIERWISNDDSLYAERLV 180
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
ribonucleotide reductase, dinuclear metal-cluster; 2.2A
{Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A
1xsm_A 2uw2_A 3hf1_A 2vux_A
Length = 390
Score = 140 bits (354), Expect = 2e-34
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 6/168 (3%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+V+D+ +L + P++Y W+ Y A + W EV + D+ W++
Sbjct: 63 PTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA--- 119
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DER I L FFA+S+ +V N+V + + E R + Q E +HS +
Sbjct: 120 LKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSL 179
Query: 134 IITSLGLDEGELFNM---YREVPSITAKANWALQYTQTLSSPSFHYWN 178
+I + D E + +P + KA+WAL++ +
Sbjct: 180 LIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 227
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond,
metal binding protein; 1.63A {Corynebacterium
ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A
1kgn_A 1uzr_A*
Length = 329
Score = 136 bits (344), Expect = 3e-33
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 5/133 (3%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+ E + N W+P ++P+ +D+ W +T E+L R +++
Sbjct: 24 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 80
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154
+++ AF E+VH+ ++ I +L E F E +
Sbjct: 81 GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 140
Query: 155 ITAKANWALQYTQ 167
+ KA + Y
Sbjct: 141 LQRKAKIIMSYYN 153
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B*
1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A
1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ...
Length = 375
Score = 135 bits (341), Expect = 6e-33
Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
V + KY + + W P EV + D +++ L + E+ + NL +
Sbjct: 25 VARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
+S+ + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+
Sbjct: 82 LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIV 141
Query: 151 EVPSITAKANWALQYTQTLSSPSFHY 176
I +A Y L + ++
Sbjct: 142 TNEQIQKRAEGISSYYDELIEMTSYW 167
>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism,
oxidoreductase; 2.10A {Salmonella typhimurium} SCOP:
a.25.1.2 PDB: 2bq1_I* 2r2f_A
Length = 319
Score = 119 bits (298), Expect = 5e-28
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R +++
Sbjct: 14 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQ 70
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
++ P L +F EAVH+ ++ I ++L + + E P
Sbjct: 71 NIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPP 130
Query: 155 ITAKANWALQYTQ 167
+ KA L +
Sbjct: 131 LQRKAQIILAHYV 143
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
RNR, radical enzyme, split SIGN metallocofactor; 1.36A
{Corynebacterium ammoniagenes} PDB: 1uzr_A*
Length = 296
Score = 118 bits (297), Expect = 8e-28
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 5/131 (3%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+ E + N W+P ++P+ +D+ W +T E+L R +++
Sbjct: 23 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 79
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
+++ AF E+VH+ ++ I +L E F E +
Sbjct: 80 GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 139
Query: 155 ITAKANWALQY 165
+ KA + Y
Sbjct: 140 LQRKAKIIMSY 150
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
reductase, four-helix bundle, dimanganese CLU
oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Length = 319
Score = 117 bits (295), Expect = 1e-27
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+ E + +N W+P +VP+ +D+ W++ LT E+ + R ++L
Sbjct: 14 ISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQ 70
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPS 154
++ P L +F EAVH+ ++ I ++L D + E
Sbjct: 71 NVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAP 130
Query: 155 ITAKANWALQYTQT 168
+ KA Q+ +
Sbjct: 131 LQRKAQIIQQHYRG 144
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
PY03671, structural genomics consortium, SGC,
oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
Length = 349
Score = 115 bits (289), Expect = 6e-27
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
++ ++++LN S+ L P+ Y W Y A + W E+ + DL ++ L
Sbjct: 24 QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---L 80
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +
Sbjct: 81 NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140
Query: 135 ITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSS 171
I + D LF+ +P+I KA WA ++ +S
Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS 180
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide
reductase, oxidoreductase, DNA replication, iron,
DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Length = 311
Score = 111 bits (278), Expect = 1e-25
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++++L+ +D L P+ Y W+ Y A + W E+ + DL ++ L D+E+
Sbjct: 29 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKH 85
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I +
Sbjct: 86 FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145
Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178
D LF+ +P++ KA WA ++ +S +
Sbjct: 146 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVA 186
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
putative class I ribonucleotide reductase,
ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
{Bacillus halodurans c-125}
Length = 346
Score = 108 bits (269), Expect = 1e-24
Identities = 30/152 (19%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
Query: 21 DKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+LN + S+V +++ WA+ Y + N W P E+ M D + + LT+ E+
Sbjct: 19 STGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQ 75
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
K+ +G A +S V + + +L++ + +F+E VH+ ++ Y+++SL
Sbjct: 76 EAFKKIIGLLAFLDS-VQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLV 134
Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTL 169
+ +F ++ + + + + +
Sbjct: 135 PKATQDEIFEYWKHDDVLKERNEFIIDGYEKF 166
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
DIIRON, carboxylate, oxidase, ligand, cavity,
monooxygenase; HET: MYR; 1.90A {Mycobacterium
tuberculosis}
Length = 323
Score = 106 bits (265), Expect = 4e-24
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLA 103
+ W P ++ D A W+ L+DDER R F + E V +I ++
Sbjct: 33 FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPFMS 89
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
R YL + AFEEA H+ F+ + ++G+ E ++P+ L
Sbjct: 90 AMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDL-HRYLDDLPAYRQIFYAEL 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.0 bits (88), Expect = 0.001
Identities = 31/207 (14%), Positives = 52/207 (25%), Gaps = 99/207 (47%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
ML+ + L + + Y++ N+H L +++ I
Sbjct: 338 MLSISN-----LTQE---QVQDYVNKTNSH--------------------LPAGKQVEI- 368
Query: 84 RNLGFFASSESLV--ANNIVLA-----IY---RHLSNPECRQYLLRQA---FEE------ 124
SLV A N+V++ +Y L + L Q+ F E
Sbjct: 369 ----------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-LDQSRIPFSERKLKFS 417
Query: 125 ------AV--HSH----TFQYIITSLGLDEGEL---------FNMY-----RE-----VP 153
A HSH I L + ++ + R
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 154 S----ITAKA-NWALQYTQTLSSPSFH 175
I W T + H
Sbjct: 478 RIVDCIIRLPVKW----ETTTQFKATH 500
Score = 32.2 bits (73), Expect = 0.075
Identities = 32/192 (16%), Positives = 49/192 (25%), Gaps = 73/192 (38%)
Query: 56 PTEVPMQDD-----LALW------------KSKNGLTDDERLMIKRNLGFFASSESLVAN 98
PTE DD L SK G D ++ L F + L N
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ---VLNLCLTEF-ENCYLEGN 99
Query: 99 NI--------------------VLAIY---RHLSNPECRQY----LLRQAFEEAVHSHT- 130
+I ++ Y R ++ + L R E
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 131 F--Q-----YIITSLGLDE-GELFNMYRE-VPSITAKANWALQYTQTLSSPSFHYWNKRR 181
F Q Y +E +L+ Y V + + L L
Sbjct: 160 FGGQGNTDDY------FEELRDLYQTYHVLVGDLIKFSAETL---SELIR------TTLD 204
Query: 182 RSRILTRSLRFL 193
++ T+ L L
Sbjct: 205 AEKVFTQGLNIL 216
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus
furiosus}
Length = 345
Score = 27.8 bits (62), Expect = 1.8
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
T +E + L +E L A N+ + R+ + R+ LL A EE H F
Sbjct: 15 YTKEE---LMEILRLAIIAE-LDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMA 70
Query: 134 IITSLGLDE-GELFNMYREVPSITAKAN 160
++ +L ++ EL + EV +T
Sbjct: 71 LLLNLDPEQVTELKGGFEEVKELTGIEA 98
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM T25; 1.55A {Arabidopsis
thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A*
3cli_A*
Length = 495
Score = 27.5 bits (60), Expect = 1.8
Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPECRQYLLRQA 121
++ + K G++ +E F + + + R + L +
Sbjct: 267 GEILVEADKLGISREEATHNLLFATCFNTWGG-MKILFPNMVKRIGRAGHQV-HNRLAEE 324
Query: 122 FEEAVHSH 129
+ S+
Sbjct: 325 IRSVIKSN 332
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.7 bits (60), Expect = 1.9
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
R + Q L A E F ++ + L+
Sbjct: 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES 190
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase;
2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A*
3chu_A 2jcd_A
Length = 336
Score = 26.8 bits (59), Expect = 3.1
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 93 ESLVAN----NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
E L+A ++ ++ +P R+ + + +E+ H++
Sbjct: 101 EQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHM 144
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 26.8 bits (58), Expect = 3.7
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
+ K G+ DE + F + V + E L +
Sbjct: 249 TPVMEQAEKLGVPKDEAVHNILFAVCFNTFGG-VKILFPNTLKWIGLAGENLHTQLAEEI 307
Query: 123 EEAVHSHTFQYI 134
A+ S+ +
Sbjct: 308 RGAIKSYGDGNV 319
>2htd_A Predicted flavin-nucleotide-binding protein from COG3576 family
structurally related...; ZP_00387536.1, structural
genomics; HET: MSE; 1.60A {Lactobacillus delbrueckii
subsp}
Length = 140
Score = 25.4 bits (55), Expect = 9.3
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 74 LTDDERLMIKRNLGFFAS 91
LT+++ + K NL + A+
Sbjct: 28 LTEEQVNLFKNNLVYLAT 45
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.133 0.411
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,705,593
Number of extensions: 72522
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 26
Length of query: 196
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 109
Effective length of database: 3,584,002
Effective search space: 390656218
Effective search space used: 390656218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)