Query 537021.9.peg.75_1
Match_columns 136
No_of_seqs 102 out of 1392
Neff 7.1
Searched_HMMs 39220
Date Mon May 23 09:10:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_75.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07209 ribonucleotide-diphos 100.0 0 0 330.5 14.1 136 1-136 256-391 (391)
2 PRK12759 bifunctional gluaredo 100.0 1.4E-43 0 306.7 12.1 136 1-136 268-405 (410)
3 PRK09101 nrdB ribonucleotide-d 100.0 1.5E-37 3.8E-42 267.2 14.8 134 1-135 225-364 (376)
4 COG0208 NrdF Ribonucleotide re 100.0 6.6E-37 1.7E-41 262.9 15.1 132 1-133 207-338 (348)
5 PTZ00211 ribonucleotide reduct 100.0 5.2E-37 1.3E-41 263.6 14.5 125 1-134 193-317 (330)
6 PRK09614 nrdF ribonucleotide-d 100.0 2.6E-35 6.7E-40 252.4 15.0 133 1-136 186-320 (325)
7 PRK13966 nrdF2 ribonucleotide- 100.0 1.1E-33 2.7E-38 241.9 14.4 131 1-134 183-316 (324)
8 PRK13965 ribonucleotide-diphos 100.0 6.3E-32 1.6E-36 230.3 13.9 133 1-136 196-332 (337)
9 PRK13967 nrdF1 ribonucleotide- 100.0 3.4E-31 8.8E-36 225.4 13.8 129 1-132 181-312 (322)
10 KOG1567 consensus 100.0 3.3E-31 8.4E-36 225.5 8.6 125 1-134 207-331 (344)
11 cd01049 RNRR2 Ribonucleotide R 100.0 7.3E-29 1.9E-33 210.2 14.1 111 1-111 176-287 (288)
12 pfam00268 Ribonuc_red_sm Ribon 99.9 2.5E-25 6.5E-30 186.9 12.0 99 1-105 180-278 (281)
13 cd07911 RNRR2_Rv0233_like Ribo 99.8 9.4E-18 2.4E-22 137.3 11.1 95 1-97 176-270 (280)
14 PRK08326 ribonucleotide-diphos 99.5 2.7E-13 6.8E-18 108.1 10.8 108 1-110 195-307 (318)
15 cd07911 RNRR2_Rv0233_like Ribo 94.3 0.091 2.3E-06 32.4 4.9 50 45-94 215-264 (280)
16 pfam11266 DUF3066 Protein of u 88.7 2.2 5.6E-05 23.3 8.1 82 5-95 124-207 (219)
17 cd01050 Acyl_ACP_Desat Acyl AC 81.8 3.5 9E-05 22.0 5.0 33 3-35 179-211 (297)
18 TIGR00289 TIGR00289 conserved 73.6 3.3 8.5E-05 22.2 2.9 49 74-127 97-146 (227)
19 TIGR01647 ATPase-IIIA_H plasma 73.3 3.5 8.8E-05 22.0 2.9 26 84-109 7-43 (835)
20 pfam03405 FA_desaturase_2 Fatt 71.7 8.4 0.00022 19.5 4.6 32 4-35 186-217 (330)
21 pfam04305 DUF455 Protein of un 69.5 9.8 0.00025 19.1 5.1 26 5-30 181-206 (250)
22 pfam11251 DUF3050 Protein of u 56.8 16 0.0004 17.8 3.6 72 22-95 31-123 (232)
23 pfam08506 Cse1 Cse1. This doma 55.2 18 0.00045 17.4 3.7 44 8-51 212-260 (370)
24 TIGR02029 AcsF magnesium-proto 54.7 7.6 0.00019 19.8 1.7 96 3-121 111-212 (344)
25 pfam02007 MtrH Tetrahydrometha 51.6 19 0.00048 17.2 3.4 43 42-85 46-88 (296)
26 TIGR00988 hip integration host 50.0 21 0.00054 16.8 3.5 32 23-54 4-35 (94)
27 pfam10603 consensus 47.6 23 0.00059 16.6 5.0 40 46-86 2-41 (55)
28 cd07908 Mn_catalase_like Manga 46.7 24 0.00061 16.5 4.4 55 4-59 49-116 (154)
29 pfam09786 CytochromB561_N Cyto 40.7 29 0.00075 15.9 6.0 106 20-133 312-421 (559)
30 PRK00979 tetrahydromethanopter 39.6 31 0.00078 15.8 3.8 44 42-86 51-94 (310)
31 cd01047 ACSF Aerobic Cyclase S 38.8 23 0.00058 16.7 2.1 17 105-121 179-196 (323)
32 CHL00185 ycf59 magnesium-proto 38.0 25 0.00063 16.4 2.2 18 104-121 192-210 (349)
33 pfam08671 SinI Anti-repressor 37.4 12 0.00031 18.4 0.6 27 56-82 2-28 (30)
34 PRK13654 magnesium-protoporphy 36.8 25 0.00063 16.4 2.1 18 104-121 196-214 (351)
35 pfam08013 Tagatose_6_P_K Tagat 31.4 41 0.0011 15.0 2.8 20 114-133 251-271 (424)
36 TIGR01502 B_methylAsp_ase meth 31.2 42 0.0011 15.0 3.1 51 43-97 179-231 (414)
37 KOG2067 consensus 29.7 32 0.00082 15.7 1.7 19 66-84 183-201 (472)
38 TIGR02254 YjjG/YfnB HAD superf 29.2 29 0.00075 15.9 1.4 81 11-98 62-147 (233)
39 pfam11583 AurF P-aminobenzoate 29.1 45 0.0011 14.7 6.9 22 10-31 113-134 (295)
40 pfam09968 DUF2202 Uncharacteri 27.9 47 0.0012 14.6 7.4 82 5-86 28-114 (162)
41 COG2833 Uncharacterized protei 27.4 43 0.0011 14.8 2.0 12 83-94 125-136 (268)
42 cd00657 Ferritin_like Ferritin 25.5 52 0.0013 14.3 5.4 59 2-60 27-93 (130)
43 TIGR00693 thiE thiamine-phosph 23.9 16 0.0004 17.7 -0.8 44 56-99 94-141 (210)
44 PRK10853 hypothetical protein; 23.7 49 0.0012 14.5 1.7 44 86-129 18-64 (118)
45 KOG0440 consensus 23.4 57 0.0015 14.0 2.7 30 76-105 138-168 (243)
46 KOG2211 consensus 23.1 58 0.0015 14.0 3.6 37 18-54 351-387 (797)
47 KOG1992 consensus 21.2 63 0.0016 13.8 3.1 27 8-34 363-394 (960)
48 pfam10925 DUF2680 Protein of u 20.9 64 0.0016 13.7 5.8 51 38-88 2-53 (59)
49 pfam09037 Sulphotransf Stf0 su 20.8 64 0.0016 13.7 6.3 55 43-97 163-219 (245)
50 COG1633 Uncharacterized conser 20.2 66 0.0017 13.6 6.8 29 4-32 55-83 (176)
No 1
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=0 Score=330.50 Aligned_cols=136 Identities=69% Similarity=1.172 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++++||+|||++|+.|++.||++++.|+|++||++++++|++++++||++|++|+++++|.|++|||++++++||
T Consensus 256 M~G~~~~~~~i~RDEslH~~f~~~li~~i~~EnP~l~t~e~~~~i~~~~~eAVelE~~f~~d~lp~gilGlna~~~~~YI 335 (391)
T PRK07209 256 MTGAAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELILEAVELEYRYARDTMPRGVLGLNASMFKDYL 335 (391)
T ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 75758776463202788999999999998741842277789999999999999999999997546887898999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 99999999976978678987888679999723667847673212222443026689
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLKWD 136 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~~D 136 (136)
+|+||+||.+||++++|+.++||||||++.+++.+++||||+|||+||+||+|+||
T Consensus 336 ~yiAdrRL~qLGl~~~y~~~~NPfpWm~e~idl~~~tNFFE~RVteYq~~g~l~wd 391 (391)
T PRK07209 336 RFIANRRLQQIGLDPLYPGTENPFPWMSEMIDLKKEKNFFETRVIEYQTGGALSWD 391 (391)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 99998999987999878999998007998627332135133208776206657889
No 2
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=1.4e-43 Score=306.72 Aligned_cols=136 Identities=31% Similarity=0.560 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHH
Q ss_conf 965255789989876999999999999842224233024337999887899999999998874698723-8798999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQY 79 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~-Gl~~~~~~~Y 79 (136)
|||+|++|+||+|||++|++|+|.||+++++|+|++++++++++|++++++||++|++|++.+||.+.+ |||+++|++|
T Consensus 268 MpGL~~sne~I~RDEglH~eFa~~Lf~~~~~e~p~i~~~~~~~~I~~ii~eAVeiE~~Fi~~alp~~~I~Gmn~~~m~qY 347 (410)
T PRK12759 268 MKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFIELAYELGTIEGLKADEVKQY 347 (410)
T ss_pred CCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 74013120001120133689999999999763712077789999999999999999999997466677899899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCC-CCCC
Q ss_conf 99999999997697867898788867999972366784767321222244302-6689
Q 537021.9.peg.7 80 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAG-LKWD 136 (136)
Q Consensus 80 i~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~-~~~D 136 (136)
|+|+|||||.+||++|+|++++||||||+..+++.++|||||+|||+|||||. .+||
T Consensus 348 IeyVADRlL~qLG~~kiy~~~~NPf~wMe~il~~~~ktNFFE~RVtEYqkagv~g~wd 405 (410)
T PRK12759 348 IRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVAGLTGSWD 405 (410)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCHH
T ss_conf 9999999999869998789999982799998767555775677688776277576488
No 3
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.5e-37 Score=267.18 Aligned_cols=134 Identities=28% Similarity=0.468 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHH
Q ss_conf 965255789989876999999999999842--224233--0243379998878999999999988746987-23879899
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 75 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~--~e~p~~--~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~ 75 (136)
|+|++++|+||+|||++|+.+++.+++.++ +++|++ +++++++++++|+++||++|++|++++|++| ++|||++.
T Consensus 225 m~g~~~~~~~i~rDE~~Hl~~~~~ii~~l~~~~e~pe~~~~~~e~~~~v~~m~~~ave~E~~wa~ylf~~G~iiGLn~~~ 304 (376)
T PRK09101 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDI 304 (376)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 84579999999971998999999999999853898278899999999999999999999999999966699716889999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCHHHHHHHCCCCC
Q ss_conf 9999999999999976978678987888679999723667-84767321222244302668
Q 537021.9.peg.7 76 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAGLKW 135 (136)
Q Consensus 76 ~~~Yi~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~-~~nFFE~r~~~Y~k~~~~~~ 135 (136)
+++||+|+||+||++||++++|+..+||+|||++|+++.+ ++||||+++|+|.+|+ ++.
T Consensus 305 l~~Yi~ylan~Rl~~lGl~~~y~~~~NPlpWm~~~~~~~~~q~a~qE~evtsY~~g~-~~~ 364 (376)
T PRK09101 305 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQ-IDS 364 (376)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEC-CCC
T ss_conf 999999999999997699999999999845899986557674673120130011214-257
No 4
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.6e-37 Score=262.89 Aligned_cols=132 Identities=40% Similarity=0.721 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|++++|+||+|||++|+.|++.+|+.+++++|+++++++++.+++++.+||++|++|+.++++ |++|||.+++++||
T Consensus 207 M~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi 285 (348)
T COG0208 207 MPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYDLFKEAVELEKEYAEYLYP-GILGLTEDLVKQYI 285 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHH
T ss_conf 87779999999977999998999999999873838556888999999999999999999998735-65799889999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 99999999976978678987888679999723667847673212222443026
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL 133 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~ 133 (136)
+|+||+||++||++|+|+...||+||++.++++.+++||||+|+++|+||++.
T Consensus 286 ~y~ankrL~~lG~~~~y~~~~NP~~~~~~~~~~~~~~dFFe~~~ssY~~~~~~ 338 (348)
T COG0208 286 RYNANKRLQNLGLEPLYPAEENPIPWIELSLSADEKTDFFEGRVSSYQKGSVA 338 (348)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 99987999975999889987896579986234333577500464167761045
No 5
>PTZ00211 ribonucleotide reductase small subunit; Provisional
Probab=100.00 E-value=5.2e-37 Score=263.57 Aligned_cols=125 Identities=30% Similarity=0.639 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++|+||+|||++|+.|++.|++.++.+.| ++.+++++++||++|.+|+.++++.+++||+++++++||
T Consensus 193 m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~e~v~~~~~eAvelE~~f~~~~~~~~~iGl~~e~l~~Yi 265 (330)
T PTZ00211 193 MPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP-------RERVQEIIKDAVEIEREFICDALPVDLIGMNSRLMAQYI 265 (330)
T ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 4117998889982099999999999999756299-------999999999999999999998736786699999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 999999999769786789878886799997236678476732122224430266
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136)
+|+||+||.+||++|+|++ +||+|||+ .++++++|||||+|||+|+|||++.
T Consensus 266 ~y~An~rL~~LG~~~~f~~-~nP~~w~~-~~~~~~ktnFFE~r~t~Y~kag~~~ 317 (330)
T PTZ00211 266 EFVADRLLVSLGYEKIYNS-KNPFDWME-MISLQGKTNFFEKKVGEYQKAGVMS 317 (330)
T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCHHHH-HHCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 9999999998799988899-99845899-8546888887667788887703564
No 6
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=2.6e-35 Score=252.42 Aligned_cols=133 Identities=28% Similarity=0.429 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++|+||+|||++|+.|++.|++++++|+|++++++++++|++++++||++|++|++++|+ ++|+ .+++++||
T Consensus 186 m~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~--~~Gl-~~~~~~Yi 262 (325)
T PRK09614 186 MTGTGQIIRLIIRDESLHGYYIGYLFQAGLEELPELEQEELKDEIYDLLYELYENEEAYTELLYD--ILGL-TEDVKKYI 262 (325)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC-HHHHHHHH
T ss_conf 62589999999987888899999999999863988557999999999999999999999999855--4787-89999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC-CCCCCCCCCCCHHHHHHHCC-CCCC
Q ss_conf 99999999976978678987888679999723-66784767321222244302-6689
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVID-LKKEKNFFETRVTEYQQGAG-LKWD 136 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~-~~~~~nFFE~r~~~Y~k~~~-~~~D 136 (136)
+|+||+||.+||++|+|+...+|.+||+.+.. +.+++||||+|+|+|+||+. ..||
T Consensus 263 ~y~an~~L~~lG~~~~f~~~~~~p~w~~~~~~~~~~~tnFFE~r~t~Y~k~~~~~~~D 320 (325)
T PRK09614 263 RYNANKALMNLGLEPLYPEEEVNPIWLNGLSNNADENHDFFEGKGTSYSKGSVEATFD 320 (325)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 9999999997799988999889977999988577804589878711323156678843
No 7
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=1.1e-33 Score=241.86 Aligned_cols=131 Identities=20% Similarity=0.300 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++|+||+|||++|+.+.+.+++.+..+.|+..++++++.+++++.++|++|++|++++++. +||+. ++++||
T Consensus 183 M~G~~~ii~~I~RDEs~H~~~~~~l~~~~~~~~~~~~~~e~~~~i~~~~~~~v~~E~~~~~~l~~~--~GL~~-dv~~Yi 259 (324)
T PRK13966 183 LTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYTQDLYDE--VGLTE-DVKKFL 259 (324)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHH-HHHHHH
T ss_conf 867899999999837888879999999988854877689999999999999999999999987523--79489-999999
Q ss_pred HHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 99999999976978678987---8886799997236678476732122224430266
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~---~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136)
+|+||+||.+||++|+|+.. .||++|+....++.+++||||+|||+|++|+++.
T Consensus 260 ~Y~ANrrL~~LGl~~~fp~~~~~~nP~~~~~~~~~~~~~~nFFE~r~t~Y~~g~~~~ 316 (324)
T PRK13966 260 RYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVV 316 (324)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 999999999788998899745788946699862256753786788700214165667
No 8
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=6.3e-32 Score=230.27 Aligned_cols=133 Identities=20% Similarity=0.209 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++|+||+|||++|+.+++.+++.+.++.+...++++++++++++++||++|++|++++++. +|+ .+++++||
T Consensus 196 M~g~~~ii~~I~RDEslH~~~~~~~~~~~~~~~~~e~~~e~~~~v~~~~~~aVelE~~~~~~~~~~--~gl-~~~l~~YI 272 (337)
T PRK13965 196 LPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLRELYAG--FDL-AEDAIRFS 272 (337)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCH-HHHHHHHH
T ss_conf 723798878998704888889999999998742987789999999999999999999999999836--776-99999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHCC--CCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf 999999999769786789878-886799997236--67847673212222443026-689
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL--KKEKNFFETRVTEYQQGAGL-KWD 136 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~-nP~~W~~~~~~~--~~~~nFFE~r~~~Y~k~~~~-~~D 136 (136)
+|+||+||.+||++|+|++.+ +|.||.-..++. .+++||||+|||+|+||++. .||
T Consensus 273 ~YiANrrL~~LGl~~~y~~~~~~~~P~~~~~~~~~~~~~~dFFE~r~t~Y~~g~~~~~~d 332 (337)
T PRK13965 273 LYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSARADENHDFFSGNGSSYVMGITEETTD 332 (337)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHEECCCCCC
T ss_conf 999999999779988899867888814589760478867785477721002100578823
No 9
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=99.97 E-value=3.4e-31 Score=225.41 Aligned_cols=129 Identities=21% Similarity=0.330 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++|+||+|||++|+.+...+++....+.|+..++++++.+++++.++|++|++|+.++++. +|++. ++.+||
T Consensus 181 M~G~~~ii~~I~RDEslH~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~v~~Ei~~~~~l~~~--lGl~~-dv~~YI 257 (322)
T PRK13967 181 LTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYANEIDYAHDLYDE--LGWTD-DVLPYM 257 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHH
T ss_conf 877899999999828888999999999874523787789999999999999999999999998712--28689-999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHC--CCCCCCCCCCCHHHHHHHCC
Q ss_conf 999999999769786789878-88679999723--66784767321222244302
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEKNFFETRVTEYQQGAG 132 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~-nP~~W~~~~~~--~~~~~nFFE~r~~~Y~k~~~ 132 (136)
+|+||+||.+||++|+|+... +|.||+...++ ..+++||||+|+|+|+||++
T Consensus 258 ~YiANrrL~~LGl~p~y~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~~~ 312 (322)
T PRK13967 258 RYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMGTH 312 (322)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 8999999997889999998557788366887576876326855788640043256
No 10
>KOG1567 consensus
Probab=99.97 E-value=3.3e-31 Score=225.54 Aligned_cols=125 Identities=33% Similarity=0.593 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|||++..+++|+|||++|++|+|.|+..+++ ++..+.|++++.+||++|.+|....+|..++|||+..|++||
T Consensus 207 MPGLTfSNELIsrdeglh~dFacll~~~l~~-------kp~~~ri~eII~eAV~IEqef~~eaLPv~liGMN~~lM~qYI 279 (344)
T KOG1567 207 MPGLTFSNELISRDEGLHCDFACLLFSHLKK-------KPNEERIEEIITEAVEIEQEFLTEALPVNLIGMNCDLMSQYI 279 (344)
T ss_pred CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHH
T ss_conf 8764332135330247761199999999860-------897899999999999999999871165455345788999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 999999999769786789878886799997236678476732122224430266
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK 134 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~ 134 (136)
+++||+.|..||+++.|++ +|||+||+ .++..++|||||+||++||++|.+.
T Consensus 280 EFVADrLL~~lG~~K~Yn~-~NPFdfME-nISl~GKTNFFEKrVseYQk~~vMs 331 (344)
T KOG1567 280 EFVADRLLVELGNEKYYNA-ENPFDFME-NISLAGKTNFFEKRVSEYQKAGVMS 331 (344)
T ss_pred HHHHHHHHHHHCCCCEECC-CCCHHHHH-HHHHCCCCCHHHHHHHHHHHCHHCC
T ss_conf 9999999998485502057-88168888-7353254415776567765010024
No 11
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=99.96 E-value=7.3e-29 Score=210.15 Aligned_cols=111 Identities=41% Similarity=0.750 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++|+||+|||++|+.|++.+++++++++|++++++++++|++++++||++|++|++++|+.+++|++++++++||
T Consensus 176 m~g~~~~i~~I~rDE~lH~~f~~~l~~~l~~e~~~~~~~~~~~~i~~~~~eav~~E~~~~~~~~~~~i~gl~~~~~~~yi 255 (288)
T cd01049 176 MPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLLPDGILGLNKEDMKQYI 255 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 60099999999998999999999999998862988565667999999999999999999999806886898999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHH
Q ss_conf 99999999976978678987-88867999972
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYT-ENPFPWMSEVI 111 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~-~nP~~W~~~~~ 111 (136)
+|+||+||.+||++++|++. +||+|||+...
T Consensus 256 ~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~~ 287 (288)
T cd01049 256 EYVANRRLENLGLEKLFNVEDKNPFDWMELIS 287 (288)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 99999999977999999999999777998751
No 12
>pfam00268 Ribonuc_red_sm Ribonucleotide reductase, small chain.
Probab=99.93 E-value=2.5e-25 Score=186.90 Aligned_cols=99 Identities=30% Similarity=0.460 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|+|+|++|+||+|||++|+.|++.||+++++++ ++.+++|++++++||++|++|++++++.+++|||++++++||
T Consensus 180 m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~-----~~~~~~v~~~~~eave~E~~~~~~~~~~~~~gl~~~~~~~Yi 254 (281)
T pfam00268 180 MPGTCQSNELISRDEALHTDAACLLYNNYLGLE-----KPEPKRIYKLFREAVEIEIEFIEAAAPVDVHGMNVRAIKQYI 254 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 344999999999989999999999999998735-----854999999999999999999998677883897999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 9999999997697867898788867
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLFKYTENPFP 105 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f~~~~nP~~ 105 (136)
+|+||+||.+||++|+|++ +||+.
T Consensus 255 ~y~an~~L~~LG~~~~f~~-~NPf~ 278 (281)
T pfam00268 255 EFSADRLLVAIGYKPLFNV-PNPFF 278 (281)
T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCC
T ss_conf 9999999997799998999-89899
No 13
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=99.76 E-value=9.4e-18 Score=137.27 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|||++++|+||+|||++|+.||+.+++.++.|+|+++ +.+++.+.+++..|++++ +++..+++.+.+|++++.+.+|+
T Consensus 176 m~G~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~-d~~~e~~~el~~~av~~~-~~~~~~~~~~~~g~~~~~f~~Y~ 253 (280)
T cd07911 176 LPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANW-DVFEERMNELVPHALGLI-DEIFELYDEMPFGLDPDELMQYA 253 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 8778999999998899999999999999998695678-999999999999999999-99985156556688999999999
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999999976978678
Q 537021.9.peg.7 81 QFIANRRCHQIGLEPLF 97 (136)
Q Consensus 81 ~y~an~rL~~lGl~~~f 97 (136)
.++|++||..|+-.+-.
T Consensus 254 ~~~a~~rLg~i~~~~~~ 270 (280)
T cd07911 254 VDQFQRRLGYIERARGQ 270 (280)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999874488785299
No 14
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=99.50 E-value=2.7e-13 Score=108.05 Aligned_cols=108 Identities=22% Similarity=0.280 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 80 (136)
Q Consensus 1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi 80 (136)
|||++++|++|.|||+.|..||..+++.++.|+|+++ +.+.+.+.+++..|+.+ ++|+..+++.-..||+.+.+.+|+
T Consensus 195 lPG~a~~Ir~I~RDE~rHi~~g~~~~~rlv~e~~~~~-~~~~e~~~el~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~ya 272 (318)
T PRK08326 195 LPGLQEGVRRIGDDESRHIAFGTYTCRRLVAADDSNW-DVFEERMNELIPLALGL-IDEGFALYDVIPFGLSKDEFMQYA 272 (318)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 9878999999861599999999999999986088889-99999999999999877-524410366688899989999999
Q ss_pred HHHHHHHHHHCCCC---CCCCC--CCCCHHHHHHH
Q ss_conf 99999999976978---67898--78886799997
Q 537021.9.peg.7 81 QFIANRRCHQIGLE---PLFKY--TENPFPWMSEV 110 (136)
Q Consensus 81 ~y~an~rL~~lGl~---~~f~~--~~nP~~W~~~~ 110 (136)
++++++||..|+.. |+... +..|..+-+..
T Consensus 273 ~~~~~~Rl~~i~~ar~~~~~~~~~~~~~~~~~~~~ 307 (318)
T PRK08326 273 ADKGQRRLGTISRARGRPLAEIDLDYSPLQLEDTF 307 (318)
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHH
T ss_conf 99998889999974199700305778989999886
No 15
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=94.32 E-value=0.091 Score=32.39 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98878999999999988746987238798999999999999999976978
Q 537021.9.peg.7 45 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 94 (136)
Q Consensus 45 i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL~~lGl~ 94 (136)
+.+.+.++++.+.+++.++.+....|+--.++..|++|++|+.+++||+-
T Consensus 215 ~~e~~~el~~~av~~~~~~~~~~~~~~~g~~~~~f~~Y~~~~a~~rLg~i 264 (280)
T cd07911 215 FEERMNELVPHALGLIDEIFELYDEMPFGLDPDELMQYAVDQFQRRLGYI 264 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998515655668899999999999999874488
No 16
>pfam11266 DUF3066 Protein of unknown function (DUF3066). This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=88.68 E-value=2.2 Score=23.31 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHH-HHHHHH
Q ss_conf 557899898769999999999998422242330243379998878999999999988746987-238798999-999999
Q 537021.9.peg.7 5 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC-EQYMQF 82 (136)
Q Consensus 5 ~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~-~~Yi~y 82 (136)
.+|.+=..+||.+|+.||..-++.-. +..++++...-++..-+--.-++.+-.+. ++||.++.+ .+|+--
T Consensus 124 RkITegVVkDEy~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~ 195 (219)
T pfam11266 124 RKITEGVVKDEYTHLNFGEEWLKANF--------ETSKEELEEANRENLPLVWKMLNQVADDAAVLGMDKEALVEDFMIA 195 (219)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 78877677447776026899999999--------9999999998886163999999999878999778899999999999
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999999769786
Q 537021.9.peg.7 83 IANRRCHQIGLEP 95 (136)
Q Consensus 83 ~an~rL~~lGl~~ 95 (136)
. ...|.++|+..
T Consensus 196 Y-~eAL~~IGf~~ 207 (219)
T pfam11266 196 Y-GEALTNIGFTT 207 (219)
T ss_pred H-HHHHHHCCCCH
T ss_conf 9-99999759758
No 17
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=81.79 E-value=3.5 Score=21.96 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 525578998987699999999999984222423
Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 35 (136)
Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 35 (136)
-++++..-|+.||++|-.|...++..+.+-+|.
T Consensus 179 ~l~~i~~rIA~DE~rH~~fYr~iv~~~le~dPd 211 (297)
T cd01050 179 VLAKLLGRIAADEARHEAFYRDIVEALFELDPD 211 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 999999887516889999999999999833936
No 18
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=73.58 E-value=3.3 Score=22.15 Aligned_cols=49 Identities=16% Similarity=0.415 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 99999999999999997697867898-7888679999723667847673212222
Q 537021.9.peg.7 74 PSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKNFFETRVTEY 127 (136)
Q Consensus 74 ~~~~~Yi~y~an~rL~~lGl~~~f~~-~~nP~~W~~~~~~~~~~~nFFE~r~~~Y 127 (136)
..-..|=|-|.|+.|+.||+..+=|- .+||++||...++ --|+.+++.=
T Consensus 97 a~~S~YQK~Rid~vCrelGlks~APLW~~dPle~~~~~V~-----e~F~v~iv~V 146 (227)
T TIGR00289 97 AIESEYQKSRIDKVCRELGLKSIAPLWHKDPLEYLLEEVA-----EKFEVIIVSV 146 (227)
T ss_pred CEECCHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHH-----CCCEEEEEEE
T ss_conf 3410112335778877714100276013481799999862-----3360899999
No 19
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534 These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Probab=73.32 E-value=3.5 Score=22.03 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=17.5
Q ss_pred HHHHHHHCCCCCCCCCCC-----------CCHHHHHH
Q ss_conf 999999769786789878-----------88679999
Q 537021.9.peg.7 84 ANRRCHQIGLEPLFKYTE-----------NPFPWMSE 109 (136)
Q Consensus 84 an~rL~~lGl~~~f~~~~-----------nP~~W~~~ 109 (136)
|.+||..-|.+.+.+.+. ||||||-+
T Consensus 7 A~~RL~~yGpN~l~Ekk~~~ll~FL~f~WnPlsWvmE 43 (835)
T TIGR01647 7 AKKRLAKYGPNELPEKKVSPLLKFLSFMWNPLSWVME 43 (835)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHH
T ss_conf 9999974288878553422599997752072489999
No 20
>pfam03405 FA_desaturase_2 Fatty acid desaturase.
Probab=71.70 E-value=8.4 Score=19.49 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 25578998987699999999999984222423
Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPH 35 (136)
Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 35 (136)
++++-.-|+-||++|-.|...++..+.+-.|.
T Consensus 186 la~i~~rIAaDE~rH~~fYr~iv~~~~eldPd 217 (330)
T pfam03405 186 LAQICGTIASDEKRHETAYTKIVEKLFELDPD 217 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999887433778999999999999802932
No 21
>pfam04305 DUF455 Protein of unknown function (DUF455).
Probab=69.53 E-value=9.8 Score=19.06 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55789989876999999999999842
Q 537021.9.peg.7 5 AEQYQYIMRDESLHLNFGIDVINQIK 30 (136)
Q Consensus 5 ~~~i~~I~RDE~lH~~~~~~l~~~l~ 30 (136)
+.+.+-|.+||.-|+.+|..=|+.++
T Consensus 181 a~iL~~I~~dEI~HVa~G~rWF~~~c 206 (250)
T pfam04305 181 AAILEVILRDEIGHVAIGNRWFRFLC 206 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998889998799999999
No 22
>pfam11251 DUF3050 Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.
Probab=56.82 E-value=16 Score=17.76 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=36.7
Q ss_pred HHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999984222-----42330243379998878999999999-----------988746987238798999999999999
Q 537021.9.peg.7 22 GIDVINQIKIE-----NPHLWTKEFQQKSRTMLHEATLLEIA-----------YAHETMPKGFVGLNAPSCEQYMQFIAN 85 (136)
Q Consensus 22 ~~~l~~~l~~e-----~p~~~~~~~~~~i~~~~~eave~E~~-----------~~~~~~~~~~~Gl~~~~~~~Yi~y~an 85 (136)
+..|++.|+.+ -|+. ..-....+.++.|-|-.|.. |--|+-....+|-+...+..|++.+.+
T Consensus 31 FMSLlK~LQ~~ltc~~~PW~--P~~~~~~~RlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GA~t~~I~~fi~~l~~ 108 (232)
T pfam11251 31 FMSLLKALQQQLTCTTVPWV--PPGNPELRRLINEIVLAEESDENLDGEHQSHFELYLDAMREVGADTSKIEAFLKLVQS 108 (232)
T ss_pred HHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 98999999985337888878--9998159999999986530365779881149999999999938991789999999875
Q ss_pred -----HHHHHCCCCC
Q ss_conf -----9999769786
Q 537021.9.peg.7 86 -----RRCHQIGLEP 95 (136)
Q Consensus 86 -----~rL~~lGl~~ 95 (136)
..|...++|+
T Consensus 109 g~~~~~al~~~~~p~ 123 (232)
T pfam11251 109 GTSVFEALAQADLPE 123 (232)
T ss_pred CCCHHHHHHHCCCCH
T ss_conf 899999987648998
No 23
>pfam08506 Cse1 Cse1. This domain is present in Cse1 nuclear export receptor proteins. Cse1 mediates the nuclear export of importin alpha. This domain contains HEAT repeats.
Probab=55.20 E-value=18 Score=17.38 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=21.2
Q ss_pred HHHHHHH-HHH----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 8998987-699----9999999999842224233024337999887899
Q 537021.9.peg.7 8 YQYIMRD-ESL----HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 51 (136)
Q Consensus 8 i~~I~RD-E~l----H~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~e 51 (136)
++||.|| |+. --+.+|.++|.|.+-+++..+..+.+.|..++.+
T Consensus 212 ~EyIRrDlEGSD~dTRRraA~dllr~L~~~fe~~vt~i~~~yi~~~L~~ 260 (370)
T pfam08506 212 IEYIRRDLEGSDSDTRRRAATDLLRGLKEKFEALVTNIVSEYVQQFLEE 260 (370)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999873334764026678999999999871789999999999999999
No 24
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; InterPro: IPR008434 This family represents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions . This enzyme is believed to utilise a binuclear iron centre and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacteria, which are differentially regulated based on the levels of copper and oxygen , . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria. CRD1 (AcsF) is required for the maintenance of photosystem I and its associated light-harvesting complexes in copper-deficient (-Cu) and oxygen-deficient (-O(2)) Chlamydomonas reinhardtii cells and is localised to the thylakoid membrane. The family also contains the Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa) AcsF protein .; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=54.69 E-value=7.6 Score=19.79 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CC---CCCHHHHHH
Q ss_conf 52557899898769999999999998422242330243379998878999999999988746987-23---879899999
Q 537021.9.peg.7 3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FV---GLNAPSCEQ 78 (136)
Q Consensus 3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~---Gl~~~~~~~ 78 (136)
=++++.++-+|||+=|+.|-=.=++.+. ..+=...+..-.+|. .|+-. +. =|| +=..
T Consensus 111 Vva~lf~lMARDEARHAGFlN~AL~~~~---------------l~ldL~~ltk~k~Yt--fF~pkFiyYAtYLS--EKIG 171 (344)
T TIGR02029 111 VVAELFQLMARDEARHAGFLNKALKDFG---------------LALDLGFLTKTKKYT--FFRPKFIYYATYLS--EKIG 171 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------EEHHHHHHHCCCCCC--CCCCEEEEEHHHHH--HHHH
T ss_conf 7899976521255566778988888715---------------011022231136001--23641144101354--4464
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHCCC-CCCCCCC
Q ss_conf 9999999999976978678987888-67999972366-7847673
Q 537021.9.peg.7 79 YMQFIANRRCHQIGLEPLFKYTENP-FPWMSEVIDLK-KEKNFFE 121 (136)
Q Consensus 79 Yi~y~an~rL~~lGl~~~f~~~~nP-~~W~~~~~~~~-~~~nFFE 121 (136)
|-||+. .-+.|.=.|-+. -.| |.||+.|=+-+ .|-++|.
T Consensus 172 YaRYIt--IYRHL~~nPe~q--fyPIF~yFe~WC~DE~~HGd~F~ 212 (344)
T TIGR02029 172 YARYIT--IYRHLEENPENQ--FYPIFKYFEEWCQDENRHGDAFA 212 (344)
T ss_pred HHHHHH--HHHHHCCCCCCC--CCCCCHHHHHHCCHHHHHHHHHH
T ss_conf 476777--525420188875--44651446532022101589999
No 25
>pfam02007 MtrH Tetrahydromethanopterin S-methyltransferase MtrH subunit. The enzyme tetrahydromethanopterin S-methyltransferase EC:2.1.1.86 is composed of eight subunits. The enzyme is a membrane- associated enzyme complex which catalyses an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide.
Probab=51.62 E-value=19 Score=17.19 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 79998878999999999988746987238798999999999999
Q 537021.9.peg.7 42 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 85 (136)
Q Consensus 42 ~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an 85 (136)
++...+++....++......-.+ ..++|-+.+.+..||+|+++
T Consensus 46 k~~Ae~Lin~q~elsd~TGnp~~-~qI~g~t~EA~~kYidfv~~ 88 (296)
T pfam02007 46 REAAEALINTQEELSDETGNPYL-VQIFGETPEAIIRYIDFVAD 88 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEE-EEEECCCHHHHHHHHHHHHC
T ss_conf 89999999999988775589657-77644898999998887632
No 26
>TIGR00988 hip integration host factor, beta subunit; InterPro: IPR005685 Integration host factor (IHF) is a heterodimeric protein consisting of alpha (IPR005684 from INTERPRO) and beta subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=49.95 E-value=21 Score=16.85 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999842224233024337999887899999
Q 537021.9.peg.7 23 IDVINQIKIENPHLWTKEFQQKSRTMLHEATL 54 (136)
Q Consensus 23 ~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave 54 (136)
..||..|..++|++..+..+..|..|+++..+
T Consensus 4 SELI~~i~~~~~~l~~k~VE~~v~~~lE~~~~ 35 (94)
T TIGR00988 4 SELIERIATEQSHLFAKDVEKAVKTMLEEMIE 35 (94)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78889987407875533389999999999999
No 27
>pfam10603 consensus
Probab=47.57 E-value=23 Score=16.61 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88789999999999887469872387989999999999999
Q 537021.9.peg.7 46 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 86 (136)
Q Consensus 46 ~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~ 86 (136)
++++..|..+|.+|..+.- .-+.|-|.+++..-|+-+.+.
T Consensus 2 kk~yerA~KlEqef~e~Ft-aiVqGdt~e~i~~qvK~vI~~ 41 (55)
T pfam10603 2 KKTYERALKLEQEFGEYFT-AIVQGDSLEEIYTQIKSVIEE 41 (55)
T ss_pred CHHHHHHHHHHHHHHHHCE-EEEECCCHHHHHHHHHHHHHH
T ss_conf 0699999999999998712-545089899999999999998
No 28
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=46.68 E-value=24 Score=16.52 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH----------H---HHHHHHHHHHHHHHHHHH
Q ss_conf 2557899898769999999999998422242330243----------3---799988789999999999
Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----------F---QQKSRTMLHEATLLEIAY 59 (136)
Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~----------~---~~~i~~~~~eave~E~~~ 59 (136)
++..+.=|+.+|.-|++..+.++..| ..+|..++.. . ...+.+++.+.+..|.+=
T Consensus 49 i~~ll~dIa~eEm~HlE~i~~~I~~L-gg~p~~~~~~~~~~~~wt~~yv~~~~~~~~~L~~diaaE~~A 116 (154)
T cd07908 49 IAETFLGIAIVEMHHLEILGQLIVLL-GGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAA 116 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999991-899841303688777488755588999999999999999999
No 29
>pfam09786 CytochromB561_N Cytochrome B561, N terminal. Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins.
Probab=40.72 E-value=29 Score=15.93 Aligned_cols=106 Identities=14% Similarity=0.300 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999842224233--02433799988789999999999887469-8723879899999999999999997697867
Q 537021.9.peg.7 20 NFGIDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 96 (136)
Q Consensus 20 ~~~~~l~~~l~~e~p~~--~~~~~~~~i~~~~~eave~E~~~~~~~~~-~~~~Gl~~~~~~~Yi~y~an~rL~~lGl~~~ 96 (136)
+...++++.+.. .|++ |++.+..+|..-+..-+-.|++-++..|. .|...+....+- =.+|++.--...
T Consensus 312 d~a~Ev~~ri~v-~~kl~qw~~nlR~Wis~til~~Lv~eid~v~~~~~~~g~~~~~ig~v~-------l~~Lr~~a~~~~ 383 (559)
T pfam09786 312 ESASEVFKRVGV-LPQIEQWRANLRQWISSTILQPLVQEIETVHIQVRQRGAPDIQIGSVG-------LEQLKKAAENQQ 383 (559)
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHH-------HHHHHHHHHHHH
T ss_conf 331899987056-616999999999999998999999998879899997589874430536-------999999985210
Q ss_pred CCCCCCC-HHHHHHHHCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 8987888-679999723667847673212222443026
Q 537021.9.peg.7 97 FKYTENP-FPWMSEVIDLKKEKNFFETRVTEYQQGAGL 133 (136)
Q Consensus 97 f~~~~nP-~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~ 133 (136)
+.....| +|++-..++.-..+..--+|+-+-++|+-+
T Consensus 384 ~~~~~~P~Lp~l~~~Ld~~~nqeYlVqRIkeLa~g~cm 421 (559)
T pfam09786 384 QVALQIPLLPLLQPFLDAITNQEYLVQRIKELAEGTCM 421 (559)
T ss_pred HCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
T ss_conf 10233786389999873264288999999998447720
No 30
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=39.59 E-value=31 Score=15.81 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 799988789999999999887469872387989999999999999
Q 537021.9.peg.7 42 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 86 (136)
Q Consensus 42 ~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~ 86 (136)
++...+++....++......-.+ ..++|-|.+.+..||+|+++.
T Consensus 51 k~~Ae~Lin~q~elsd~tGnp~~-~qI~g~t~EA~~kYidfv~~~ 94 (310)
T PRK00979 51 KEAAEALINRQAELSDITGNPYI-LQIFGETGEAIEKYIDFVSEI 94 (310)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEE-EEEECCCHHHHHHHHHHHHHC
T ss_conf 89999999999988774589657-776448989999998877404
No 31
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=38.79 E-value=23 Score=16.68 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=7.2
Q ss_pred HHHHHHHCCCC-CCCCCC
Q ss_conf 79999723667-847673
Q 537021.9.peg.7 105 PWMSEVIDLKK-EKNFFE 121 (136)
Q Consensus 105 ~W~~~~~~~~~-~~nFFE 121 (136)
.||+.|-+-+. |.+||.
T Consensus 179 ~~Fe~WCqDE~RHGd~F~ 196 (323)
T cd01047 179 KYFENWCQDENRHGDFFA 196 (323)
T ss_pred HHHHHHHCCCHHHHHHHH
T ss_conf 989988534124179999
No 32
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=38.05 E-value=25 Score=16.43 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=8.9
Q ss_pred HHHHHHHHCCCC-CCCCCC
Q ss_conf 679999723667-847673
Q 537021.9.peg.7 104 FPWMSEVIDLKK-EKNFFE 121 (136)
Q Consensus 104 ~~W~~~~~~~~~-~~nFFE 121 (136)
|.||+.|-+-+. |.+||.
T Consensus 192 F~~Fe~WCqDE~rHGd~F~ 210 (349)
T CHL00185 192 FKFFENWCQDENRHGDFFA 210 (349)
T ss_pred HHHHHHHHCCCHHHHHHHH
T ss_conf 9999998433024079999
No 33
>pfam08671 SinI Anti-repressor SinI. SinR is a pleiotropic regulator of several late growth processes. It is a tetrameric DNA binding protein whose activity is down-regulated thorough the formation of a SinI:SinR protein complex. When complexed with SinI, the SinR tetramer is disrupted such that is no longer able to bind DNA.
Probab=37.44 E-value=12 Score=18.41 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=19.9
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 999988746987238798999999999
Q 537021.9.peg.7 56 EIAYAHETMPKGFVGLNAPSCEQYMQF 82 (136)
Q Consensus 56 E~~~~~~~~~~~~~Gl~~~~~~~Yi~y 82 (136)
..+|...+..--..|++++++.+|+.+
T Consensus 2 D~EW~~Li~EA~~~Gis~ee~r~fL~~ 28 (30)
T pfam08671 2 DQEWVQLIKEAMEAGLSKEEFREFLEF 28 (30)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 579999999999814679999999850
No 34
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=36.75 E-value=25 Score=16.43 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=8.4
Q ss_pred HHHHHHHHCCCC-CCCCCC
Q ss_conf 679999723667-847673
Q 537021.9.peg.7 104 FPWMSEVIDLKK-EKNFFE 121 (136)
Q Consensus 104 ~~W~~~~~~~~~-~~nFFE 121 (136)
|.||+.|-+-+. |.+||.
T Consensus 196 F~~Fe~WCqDE~RHGd~F~ 214 (351)
T PRK13654 196 FKFFENWCQDENRHGDFFA 214 (351)
T ss_pred HHHHHHHHCCHHHHHHHHH
T ss_conf 9999998423124178999
No 35
>pfam08013 Tagatose_6_P_K Tagatose 6 phosphate kinase. Proteins in this family are tagatose 6 phosphate kinases.
Probab=31.39 E-value=41 Score=14.97 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=14.7
Q ss_pred CCCCCC-CCCCHHHHHHHCCC
Q ss_conf 678476-73212222443026
Q 537021.9.peg.7 114 KKEKNF-FETRVTEYQQGAGL 133 (136)
Q Consensus 114 ~~~~nF-FE~r~~~Y~k~~~~ 133 (136)
.+.-+| ||..+|+||...++
T Consensus 251 ~~~p~lVfEAHSTDYQt~~al 271 (424)
T pfam08013 251 EDQPGLVFEAHSTDYQTPEAL 271 (424)
T ss_pred HHCCCEEEEECCCCCCCHHHH
T ss_conf 748883786257677986899
No 36
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase; InterPro: IPR006395 These sequences describe methylaspartate ammonia-lyase, also called beta-methylaspartase. It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. .
Probab=31.22 E-value=42 Score=14.95 Aligned_cols=51 Identities=14% Similarity=0.345 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99988789999999999887469-872-38798999999999999999976978678
Q 537021.9.peg.7 43 QKSRTMLHEATLLEIAYAHETMP-KGF-VGLNAPSCEQYMQFIANRRCHQIGLEPLF 97 (136)
Q Consensus 43 ~~i~~~~~eave~E~~~~~~~~~-~~~-~Gl~~~~~~~Yi~y~an~rL~~lGl~~~f 97 (136)
..+-+|+...|+. .=+-+|+ ..- +|++=+.+-+||+|+.+ |..+||..+-|
T Consensus 179 ~nvdkMilK~vdV---LPHgLiNsve~k~G~dG~~l~EyvkWl~~-R~~~lgv~~gY 231 (414)
T TIGR01502 179 RNVDKMILKEVDV---LPHGLINSVEKKLGLDGEKLLEYVKWLSE-RIAKLGVSEGY 231 (414)
T ss_pred HCHHHHHHHHCCC---CCCCHHCCHHHHCCCCCHHHHHHHHHHHH-HHHHCCCCCCC
T ss_conf 1334422300255---76401202032228871155778888999-88750678898
No 37
>KOG2067 consensus
Probab=29.72 E-value=32 Score=15.68 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 8723879899999999999
Q 537021.9.peg.7 66 KGFVGLNAPSCEQYMQFIA 84 (136)
Q Consensus 66 ~~~~Gl~~~~~~~Yi~y~a 84 (136)
..+.+||.+.+.+|++|.-
T Consensus 183 ~~i~~I~~~~l~~yl~~~y 201 (472)
T KOG2067 183 ENIDKINREVLEEYLKYFY 201 (472)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 5531303999999998617
No 38
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254; InterPro: IPR011951 This family consists of uncharacterised proteobacterial and Gram-positive bacterial sequences including YjjG from Escherichia coli and YfnB from Bacillus subtilis..
Probab=29.16 E-value=29 Score=15.93 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH-----HHHHHHHH
Q ss_conf 8987699999999999984222423302433799988789999999999887469872387989999-----99999999
Q 537021.9.peg.7 11 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE-----QYMQFIAN 85 (136)
Q Consensus 11 I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~-----~Yi~y~an 85 (136)
|.||+-.|.+|...+=.....-+| -...+-+-+.++.+-+..++..+++. +--|-..+.+ +=++.+=+
T Consensus 62 i~~~~l~~~RF~~~~~~l~~~~D~------qi~~l~~~yl~~l~~~~~L~pGA~el-~~~L~~~d~~l~ivtNG~~~~Q~ 134 (233)
T TIGR02254 62 ITKDELVLTRFEELLKELNTEADE------QILKLNKEYLEFLEEKARLLPGALEL-MEALQKKDLRLYIVTNGVREVQE 134 (233)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHCCCCCEEEEEECCHHHHHH
T ss_conf 667889899999999870776778------89999999999987320237007999-99870077137888777066777
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9999769786789
Q 537021.9.peg.7 86 RRCHQIGLEPLFK 98 (136)
Q Consensus 86 ~rL~~lGl~~~f~ 98 (136)
.||+..|+.|.|+
T Consensus 135 ~rl~~~gL~~Ff~ 147 (233)
T TIGR02254 135 KRLRKSGLAPFFD 147 (233)
T ss_pred HHHHHCCCCHHHH
T ss_conf 8876347721051
No 39
>pfam11583 AurF P-aminobenzoate N-oxygenase AurF. AurF is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalysing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.
Probab=29.13 E-value=45 Score=14.72 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9898769999999999998422
Q 537021.9.peg.7 10 YIMRDESLHLNFGIDVINQIKI 31 (136)
Q Consensus 10 ~I~RDE~lH~~~~~~l~~~l~~ 31 (136)
-...||.-|+.++..+++.+..
T Consensus 113 ~e~~DE~~H~~mf~~~~~~~g~ 134 (295)
T pfam11583 113 TEIVDECYHALMFQDAIERIGR 134 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999899999999999876
No 40
>pfam09968 DUF2202 Uncharacterized protein domain (DUF2202). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=27.85 E-value=47 Score=14.58 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHH
Q ss_conf 55789989876999999999999842224233024--3-379998878999999999988746987--238798999999
Q 537021.9.peg.7 5 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK--E-FQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQY 79 (136)
Q Consensus 5 ~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~--~-~~~~i~~~~~eave~E~~~~~~~~~~~--~~Gl~~~~~~~Y 79 (136)
.++..=|+|-|+.|.+....|+....-.+|-.-.. . ...++.+++...++.-..=...++..| +..++..++...
T Consensus 28 ~~iF~NIa~SEq~HmdaV~~Ll~~Y~l~dP~~~~~~G~F~npelQ~LYn~L~~~G~~S~~dAL~VGa~IEelDI~DL~~~ 107 (162)
T pfam09968 28 LPVFLNIARSEQTHMDAVKSLLDKYGLEDPILSETVGVFTNPDLQELYNQLVEKGSKSLEDALKVGATIEDLDIYDLEEA 107 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
T ss_conf 38888999989999999999999839999987786785288779999999999733528999983820222569999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 537021.9.peg.7 80 MQFIANR 86 (136)
Q Consensus 80 i~y~an~ 86 (136)
+.-.-|.
T Consensus 108 i~~t~n~ 114 (162)
T pfam09968 108 IAETDNQ 114 (162)
T ss_pred HHHCCHH
T ss_conf 9850808
No 41
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.38 E-value=43 Score=14.82 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=7.3
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999976978
Q 537021.9.peg.7 83 IANRRCHQIGLE 94 (136)
Q Consensus 83 ~an~rL~~lGl~ 94 (136)
+.|.||++||+.
T Consensus 125 Ll~~~L~~LG~~ 136 (268)
T COG2833 125 LLRERLKSLGYD 136 (268)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999981887
No 42
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=25.49 E-value=52 Score=14.30 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6525578998987699999999999984222423302--------4337999887899999999998
Q 537021.9.peg.7 2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT--------KEFQQKSRTMLHEATLLEIAYA 60 (136)
Q Consensus 2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~--------~~~~~~i~~~~~eave~E~~~~ 60 (136)
+....+.+-++.||.-|......+++.+-...|.... ........+++..++..|..-+
T Consensus 27 ~~~~~~~~~~a~eE~~H~~~l~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~E~~a~ 93 (130)
T cd00657 27 PDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSDDPAEALRAALEVEARAI 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7799999999999999999999999980898888750333300014589999999999999999999
No 43
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=23.90 E-value=16 Score=17.73 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCC-CCCCCHHHHHHHHHHHH---HHHHHHCCCCCCCCC
Q ss_conf 999988746987-23879899999999999---999997697867898
Q 537021.9.peg.7 56 EIAYAHETMPKG-FVGLNAPSCEQYMQFIA---NRRCHQIGLEPLFKY 99 (136)
Q Consensus 56 E~~~~~~~~~~~-~~Gl~~~~~~~Yi~y~a---n~rL~~lGl~~~f~~ 99 (136)
..+.++.+++.. ++|+|...+.+-.+..+ +...-=+|+.|+|+.
T Consensus 94 p~~~aR~l~G~~~iiG~S~~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT 141 (210)
T TIGR00693 94 PVSEARKLLGPDKIIGVSTHNLEELAEAAACELKEGADYIGVGPIFPT 141 (210)
T ss_pred CHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 989999853899579853379899999998764078988886371158
No 44
>PRK10853 hypothetical protein; Provisional
Probab=23.72 E-value=49 Score=14.50 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHHHCCCCCCC-CCCCCCH--HHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 999976978678-9878886--7999972366784767321222244
Q 537021.9.peg.7 86 RRCHQIGLEPLF-KYTENPF--PWMSEVIDLKKEKNFFETRVTEYQQ 129 (136)
Q Consensus 86 ~rL~~lGl~~~f-~~~~nP~--~W~~~~~~~~~~~nFFE~r~~~Y~k 129 (136)
+.|.+-|++-.| +..++|+ .-+..|+...+-..+|.+|++.|-+
T Consensus 18 kwL~~~~i~y~f~D~k~~~~~~~~l~~wl~~~G~~~liN~rgtt~R~ 64 (118)
T PRK10853 18 RWLEENGIDYRFHDYRVDGLDSELLNGFIAELGWEALLNTRGTTWRK 64 (118)
T ss_pred HHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCHHHHHCCCCCHHHH
T ss_conf 99998799818963114698999999999962989875166635664
No 45
>KOG0440 consensus
Probab=23.36 E-value=57 Score=14.04 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCC-CCCHH
Q ss_conf 9999999999999976978678987-88867
Q 537021.9.peg.7 76 CEQYMQFIANRRCHQIGLEPLFKYT-ENPFP 105 (136)
Q Consensus 76 ~~~Yi~y~an~rL~~lGl~~~f~~~-~nP~~ 105 (136)
--+||+|+.+..=.++.=+.+||.+ .+|||
T Consensus 138 ApqYId~lmtw~q~~~dde~iFPtK~g~~FP 168 (243)
T KOG0440 138 APQYIDYLMTWCQNQLDDENIFPTKYGNPFP 168 (243)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 1589999999998734530027643578798
No 46
>KOG2211 consensus
Probab=23.07 E-value=58 Score=14.01 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999842224233024337999887899999
Q 537021.9.peg.7 18 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 54 (136)
Q Consensus 18 H~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave 54 (136)
|..|+..+.+...++-|+.+-+.+++..+.-+.+|.-
T Consensus 351 h~~l~~e~sk~gd~cI~~rfw~~l~qal~sqfd~a~~ 387 (797)
T KOG2211 351 HAELSQEMSKNGDKCIPERFWKKLEQALHSQFDDALL 387 (797)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999986332337999999999999988875147
No 47
>KOG1992 consensus
Probab=21.25 E-value=63 Score=13.77 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=11.1
Q ss_pred HHHHHHH-HHHH----HHHHHHHHHHHHHHCH
Q ss_conf 8998987-6999----9999999998422242
Q 537021.9.peg.7 8 YQYIMRD-ESLH----LNFGIDVINQIKIENP 34 (136)
Q Consensus 8 i~~I~RD-E~lH----~~~~~~l~~~l~~e~p 34 (136)
++||.|| |+.- -+.+|.|++.|++-+.
T Consensus 363 leYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe 394 (960)
T KOG1992 363 LEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFE 394 (960)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99998753467753257799999999998702
No 48
>pfam10925 DUF2680 Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known.
Probab=20.93 E-value=64 Score=13.73 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 243379998878999999999988746987238-798999999999999999
Q 537021.9.peg.7 38 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRC 88 (136)
Q Consensus 38 ~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~G-l~~~~~~~Yi~y~an~rL 88 (136)
|+.-+.++.++-...+++.++.++-.-..|++- =-++.+++.|.-+-+.+-
T Consensus 2 T~qQk~ei~~l~kqi~el~Kqii~KyVe~G~iT~eQa~~i~~~id~r~~~~~ 53 (59)
T pfam10925 2 TDQQKKEIEALYKQIAELRKQVIDKYVEAGVITKEQADHIKKNIDKRVEYMK 53 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6888999999999999999999999998275649999999999999999999
No 49
>pfam09037 Sulphotransf Stf0 sulphotransferase. Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices.
Probab=20.83 E-value=64 Score=13.72 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99988789999999999887469872--38798999999999999999976978678
Q 537021.9.peg.7 43 QKSRTMLHEATLLEIAYAHETMPKGF--VGLNAPSCEQYMQFIANRRCHQIGLEPLF 97 (136)
Q Consensus 43 ~~i~~~~~eave~E~~~~~~~~~~~~--~Gl~~~~~~~Yi~y~an~rL~~lGl~~~f 97 (136)
+.|...+....+.|..|..+.-..|+ +-++-|++..=-.-...+.|..||+++.-
T Consensus 163 ~~I~~~~~~i~~~~~~W~~~F~~~gI~Pl~i~YE~L~adp~~~v~~Vl~~Lg~~~~~ 219 (245)
T pfam09037 163 GAIAHCVRMLRDQEAAWRAWFEEEGIEPIRITYEDLAANPQATVSLVLEALGLDPPL 219 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999999976997578569998769999999999994889776
No 50
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=20.19 E-value=66 Score=13.63 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25578998987699999999999984222
Q 537021.9.peg.7 4 IAEQYQYIMRDESLHLNFGIDVINQIKIE 32 (136)
Q Consensus 4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e 32 (136)
+.+.+.++++||.-|..-+..++..+...
T Consensus 55 ~rk~~~~la~eE~~H~~~f~~l~~~~~~~ 83 (176)
T COG1633 55 IRKLFEDLADEEMRHLRKFEKLLEKLTPK 83 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999986677
Done!