Query         537021.9.peg.75_1
Match_columns 136
No_of_seqs    102 out of 1392
Neff          7.1 
Searched_HMMs 33803
Date          Mon May 23 06:33:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_75.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2rcc_A Ribonucleoside-diphosp 100.0 2.4E-37   7E-42  265.4  12.2  136    1-136    57-195 (197)
  2 >1syy_A Ribonucleoside-diphosp 100.0 1.1E-34 3.2E-39  247.9  12.1  134    1-135   213-346 (346)
  3 >1r2f_A Protein (ribonucleotid 100.0   3E-34   9E-39  245.0  13.0  133    1-136    50-186 (191)
  4 >3dhz_A Ribonucleotide reducta 100.0 2.8E-34 8.4E-39  245.2  12.2  133    1-136    50-186 (191)
  5 >1jk0_A RNR Y2, ribonucleoside 100.0 2.2E-34 6.6E-39  245.9   9.7  125    1-134   155-279 (295)
  6 >2p1i_A Ribonucleotide reducta 100.0 6.2E-34 1.8E-38  243.0  10.9  125    1-134    51-175 (188)
  7 >1jk0_B RNR Y4, ribonucleoside 100.0 2.2E-34 6.4E-39  246.0   7.8  125    1-134    60-184 (199)
  8 >1h0o_A Ribonucleoside-diphosp 100.0 8.2E-34 2.4E-38  242.2  10.2  125    1-134    35-159 (172)
  9 >1mxr_A Ribonucleotide reducta 100.0 1.4E-32 4.2E-37  234.1  11.8  133    1-133   224-362 (375)
 10 >3ee4_A Probable ribonucleosid  99.9 5.9E-27 1.7E-31  197.2  11.2  127    1-132   197-323 (323)
 11 >2o1z_A Ribonucleotide reducta  99.9 3.5E-27   1E-31  198.7   8.4  100    1-108    51-150 (151)
 12 >3chh_A P-aminobenzoate N-oxyg  99.2 1.4E-11 4.2E-16   96.3   4.0  118    1-127   213-333 (336)
 13 >1za0_A Possible acyl-[acyl-ca  91.5    0.36 1.1E-05   28.1   4.9   89    2-97    176-267 (275)
 14 >2oc5_A Hypothetical protein;   88.7     1.9 5.6E-05   23.3   9.4   81    5-94    148-230 (244)
 15 >2uw1_A Desaturase, plastid de  88.5     1.3 3.7E-05   24.5   5.6   33    3-35     37-69  (166)
 16 >3ge3_A Toluene-4-monooxygenas  71.2     7.8 0.00023   19.3   9.1   90    4-96    220-314 (374)
 17 >1j30_A 144AA long hypothetica  57.7      14 0.00041   17.6   5.5   63    1-64     39-101 (144)
 18 >2oh3_A Rubrerythrin, COG1633:  51.6      15 0.00043   17.5   3.1  103    2-106    37-163 (167)
 19 >2fzf_A Hypothetical protein;   51.2      18 0.00052   17.0   3.8   28    3-30     50-77  (90)
 20 >3hl1_A Ferritin like protein;  46.4      21 0.00062   16.5   3.9   28    3-30     42-69  (317)
 21 >2e0z_A Virus-like particle; b  44.6     7.1 0.00021   19.6   0.6   33    2-34     48-80  (345)
 22 >1vlg_A Ferritin; TM1128, stru  43.9      23 0.00067   16.2   4.6   63    1-64     50-116 (176)
 23 >1mhy_B Methane monooxygenase   36.4      30 0.00088   15.5   7.1  103    4-109   242-349 (357)
 24 >1mty_B Methane monooxygenase   34.5      32 0.00094   15.3   9.6  102    4-108   242-346 (354)
 25 >1krq_A Ferritin; H-chain like  32.4      34   0.001   15.1   3.2   61    1-62     36-100 (167)
 26 >1otk_A Protein PAAC, phenylac  28.5      40  0.0012   14.7   8.4   84    4-96     39-131 (138)
 27 >3b81_A Transcriptional regula  27.1      42  0.0012   14.5   5.6   50   48-97     69-118 (123)
 28 >3ibx_A TENA, HP1287, putative  24.9      46  0.0014   14.2   5.7   23  104-126   163-187 (221)
 29 >2inp_C Phenol hydroxylase com  24.4      47  0.0014   14.2   9.9   84    3-95     26-109 (112)
 30 >1nfv_A Bacterioferritin; 24 s  23.8      48  0.0014   14.1   3.6   29    2-30     43-71  (179)
 31 >1vjx_A Putative ferritin-like  21.9      52  0.0015   13.9   4.8   83    2-85     42-140 (157)
 32 >2o1u_A Endoplasmin; GRP94, HS  20.1      48  0.0014   14.1   1.4   56   40-95     96-155 (158)

No 1  
>>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} (A:150-346)
Probab=100.00  E-value=2.4e-37  Score=265.41  Aligned_cols=136  Identities=29%  Similarity=0.492  Sum_probs=128.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |+|+|++|+||+|||++|+.+++.||+++++|+|+.++++++++|++++.+||++|++|++++|+.+++|++++++++||
T Consensus        57 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yi  136 (197)
T 2rcc_A           57 XVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYI  136 (197)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             55389999999744889998899999987540663210014899999999999999999999706765798899999999


Q ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf             9999999997697867898-788867999972366-7847673212222443026-689
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAGL-KWD  136 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~-~~nP~~W~~~~~~~~-~~~nFFE~r~~~Y~k~~~~-~~D  136 (136)
                      +|+||+||.+||++|+|++ .+||+|||+..++.. +++||||+|+|+|++|++. .||
T Consensus       137 ky~an~~L~~lG~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~d  195 (197)
T 2rcc_A          137 SFIANKRAVQLGXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD  195 (197)
T ss_dssp             HHHHHHHHHHTTCCCSCTTCCSCSCTTC-------------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf             99999999977999899987799588999865347653588888768751066778866


No 2  
>>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:)
Probab=100.00  E-value=1.1e-34  Score=247.95  Aligned_cols=134  Identities=59%  Similarity=1.056  Sum_probs=131.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |||+++++++|+|||++|+.|++.+++.++.|.|+.+++++++.+++++.+||++|.+|++++++.+.+|++++.+++|+
T Consensus       213 l~~~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~~~~~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yv  292 (346)
T 1syy_A          213 MIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYV  292 (346)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             32079988888521567888999999998650098752138999999999999999999999667887898999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             9999999997697867898788867999972366784767321222244302668
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLKW  135 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~~  135 (136)
                      +|+||+||.+||++++|++ +||+||++..+++.+++||||+|+|+|+||++++|
T Consensus       293 ~~~an~~L~~lG~~~~~~~-~np~~w~~~~~~~~~~~nfFe~~~~~Y~~~~~~~w  346 (346)
T 1syy_A          293 QHIADRRLERIGLKPIYHT-KNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW  346 (346)
T ss_dssp             HHHHHHHHHHTTCCCSSCC-CCSCTTC----------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf             9999999997799998999-99647799873867775778897331365576889


No 3  
>>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319)
Probab=100.00  E-value=3e-34  Score=245.01  Aligned_cols=133  Identities=19%  Similarity=0.204  Sum_probs=122.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |+|+|++|+||+|||++|+.+++.|++++++|+|++++++++++|++++++||++|++|++++|+   .|++++++++||
T Consensus        50 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~---~g~~~e~~~~yi  126 (191)
T 1r2f_A           50 LTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYA---ETGWVNDVKAFL  126 (191)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHH
T ss_conf             84489999999988989999999999999985448888789999999999999999999998743---357699999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCC-C--CCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf             99999999976978678987-8--88679999723667847673212222443026-689
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYT-E--NPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL-KWD  136 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~-~--nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~-~~D  136 (136)
                      +|+||+||.+||++|+|++. +  +|++|+...+++.+++||||+|+|+|+||+.. .||
T Consensus       127 ~y~an~rl~~lG~~~~f~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d  186 (191)
T 1r2f_A          127 CYNANKALMNLGYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETED  186 (191)
T ss_dssp             HHHHHHHHHHTTCCCCSCTTTSCCCHHHHHHHCC--------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf             999999999779998889766888965899865145745888778755412057788832


No 4  
>>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329)
Probab=100.00  E-value=2.8e-34  Score=245.21  Aligned_cols=133  Identities=19%  Similarity=0.210  Sum_probs=123.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |||+|++|+||+|||++|+.+++.|++++++|+|+.+++++.+++++++++||++|++|++++|+   .|++++++++||
T Consensus        50 m~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~~~~~ave~E~~~~~~~~~---~g~~~~~~~~yi  126 (191)
T 3dhz_A           50 LTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYD---DLGWTEDVKRFL  126 (191)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_conf             86289999999620588999999999999763889889988999999999999999999998864---565499999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC-CCC
Q ss_conf             99999999976978678987---888679999723667847673212222443026-689
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGL-KWD  136 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~---~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~-~~D  136 (136)
                      +|+||+||.+||++|+|++.   +||++|+...+++.+++||||+|||+|+||+.. .||
T Consensus       127 ~y~an~~L~~lGl~~~y~~~~~~~~p~~~~~~~~~~~~~~nFFe~r~t~Y~k~~~~~~~d  186 (191)
T 3dhz_A          127 RYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEDTTD  186 (191)
T ss_dssp             HHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC---------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999999779999899877889837898753024656787747744340022577754


No 5  
>>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-103,A:228-419)
Probab=100.00  E-value=2.2e-34  Score=245.89  Aligned_cols=125  Identities=30%  Similarity=0.533  Sum_probs=116.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |+|+|++|+||+|||++|+.|++.||+.++++.|       .+.+.+++.+||++|.+|++++|+.+++|++++++++||
T Consensus       155 M~Gl~~~I~lI~RDE~lH~~f~~~L~~~l~~e~~-------~e~v~el~~eAvelE~ef~~~~l~~~~lGi~~e~i~qYI  227 (295)
T 1jk0_A          155 MPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD-------PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYV  227 (295)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             2427999999998999999999999998640321-------889999999999999999998537885799999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             999999999769786789878886799997236678476732122224430266
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK  134 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~  134 (136)
                      +|+||+||.+||++++|++ +||+|||+..++ .+++||||+||++|+||+.+.
T Consensus       228 kY~AN~~L~~LG~e~~F~~-~NP~~wme~~~d-~~ktNFFE~rvs~YqK~~~~~  279 (295)
T 1jk0_A          228 EFVADRLLVAFGNKKYYKV-ENPFDFMENISL-AGKTNFFEKRVSDYQKAGVMS  279 (295)
T ss_dssp             HHHHHHHHHTTTCCCSSCC-CCCCGGGGC-------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHCC-CCCCCCCCCCHHHHHHCCCCC
T ss_conf             9999999997699987999-998258887245-788787678788787624776


No 6  
>>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} (A:162-349)
Probab=100.00  E-value=6.2e-34  Score=242.98  Aligned_cols=125  Identities=30%  Similarity=0.590  Sum_probs=116.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |+|+|++|+||+|||++|+.+++.++++++.+.|       .+.+++++.+||++|++|++++|+.+++|++++++++||
T Consensus        51 m~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~gi~~~~~~~yi  123 (188)
T 2p1i_A           51 LHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYI  123 (188)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             3046999999966677768899899999982498-------999998999999999999999704352120067799999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             999999999769786789878886799997236678476732122224430266
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK  134 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~  134 (136)
                      +|+||+||.+||++|+|++ +||+|||+.+. ..+++||||+|+|+|+||+...
T Consensus       124 ~y~an~~L~~lG~~~~f~~-~nP~~w~~~~~-~~~~~nFFE~~~t~Y~k~~~~~  175 (188)
T 2p1i_A          124 EFVADRLLECLGCSKVFHS-KNPFNWMDLIS-LQGKTNFFEKRVADYQKSGVMA  175 (188)
T ss_dssp             HHHHHHHHHHTTCCCSSCC-CCSCCC----------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCCCHHHCC-CCCCCCCCCCCHHHHHCCCCCC
T ss_conf             9999999997799999999-99965055515-6745578877765630366667


No 7  
>>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (B:147-345)
Probab=100.00  E-value=2.2e-34  Score=246.00  Aligned_cols=125  Identities=24%  Similarity=0.465  Sum_probs=117.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |+|+|++|+||+|||++|+.+++.|+++++++.|       ++.+++++++||++|++|++++++.+++|++++++++||
T Consensus        60 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~-------~~~i~~l~~eave~E~~~~~~~~~~~~~g~~~~~~~~yi  132 (199)
T 1jk0_B           60 MPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPN-------PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYI  132 (199)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             5107999999874799999999999998612211-------779999999999999999985445453375899999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             999999999769786789878886799997236678476732122224430266
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK  134 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~  134 (136)
                      +|+||+||.+||++|+|+. +||+||++.+++ .+++||||+|+|+|+||++.+
T Consensus       133 ~y~an~~L~~lG~~~~f~~-~nP~~~~~~~~~-~~~~nFFe~~~t~Y~k~~~~~  184 (199)
T 1jk0_B          133 EFVADGLLQGFGNEKYYNA-VNPFEFMEDVAT-AGKTTFFEKKVSDYQKASDMS  184 (199)
T ss_dssp             HHHHHHHHHHTTCCCCC-------------------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHC-CCCCCCCCCCHHHHHCCCCCC
T ss_conf             9999999997799987899-997579998737-577655677655310244566


No 8  
>>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} (A:219-390)
Probab=100.00  E-value=8.2e-34  Score=242.19  Aligned_cols=125  Identities=31%  Similarity=0.614  Sum_probs=116.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |+|+|++|+||+|||++|+.+++.+++.+++|.|       .+.+++++++||++|++|++++|+.+++|++++++++||
T Consensus        35 m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~-------~~~~~~l~~eav~~E~~~~~~~~~~~~~g~~~~~~~~yi  107 (172)
T 1h0o_A           35 MPGLTFSNELISRDEGLHCDFACLMFKHLVHKPA-------EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYI  107 (172)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             1418999999998899999999999998750238-------999999999989999999999668974797999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             999999999769786789878886799997236678476732122224430266
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAGLK  134 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~~~  134 (136)
                      +|+||+||.+||++++|++ +||+||++.. ...+++||||+|+|+|+||+..+
T Consensus       108 ~y~an~~L~~LG~~~~y~~-~nP~~~~~~~-~~~~~~nFFe~~~t~Y~k~~~~~  159 (172)
T 1h0o_A          108 EFVADRLMLELGFNKIFRV-ENPFDFMENI-SLEGKTNFFEKRVGEYQRMGVMS  159 (172)
T ss_dssp             HHHHHHHHHHTTCCCSSCC-CCSCGGGC--------------------------
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCHHHHHHC-CCCCCCCCCCCCHHHHHHCCCCC
T ss_conf             9999999997799998999-9985789861-25677577656578664356678


No 9  
>>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} (A:)
Probab=100.00  E-value=1.4e-32  Score=234.06  Aligned_cols=133  Identities=27%  Similarity=0.385  Sum_probs=123.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHH
Q ss_conf             965255789989876999999999999842224233024----3379998878999999999988746987-23879899
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS   75 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~----~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~   75 (136)
                      |||+|+++++|+|||++|+.|++.+++.++.+.|+.+++    ++++.+++++.+||++|++|++++++.+ ++|++++.
T Consensus       224 l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~e~~~~v~~l~~eav~~E~~~~~~~~~~~~i~g~~~~~  303 (375)
T 1mxr_A          224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDI  303 (375)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             85489999999853999999999999999842796358898899999999999999999999999984578858989999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCHHHHHHHCCC
Q ss_conf             999999999999997697867898788867999972366-7847673212222443026
Q 537021.9.peg.7   76 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAGL  133 (136)
Q Consensus        76 ~~~Yi~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~-~~~nFFE~r~~~Y~k~~~~  133 (136)
                      +++||+|+||+||.+||++++|++.+||+||+..+.+.. +++||||+|+|+|++|+..
T Consensus       304 ~~~yi~y~an~~L~~lG~~~~f~~~~~p~~~~~~~~~~~~~~~nFFe~~~t~Y~~~~~~  362 (375)
T 1mxr_A          304 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQID  362 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSCCCCCSCGGGGGTC-----------------------
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             99999999999999779999999999985689998713887548766871001233556


No 10 
>>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:)
Probab=99.94  E-value=5.9e-27  Score=197.22  Aligned_cols=127  Identities=16%  Similarity=0.103  Sum_probs=118.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |||+++++++|+|||++|+.|++.+++.+++|+|+.. ++.++.+++++.+||++|.+|+.++++...+|++++.+.+|+
T Consensus       197 l~~~~~~~~~I~rDE~~H~~f~~~~~~~l~~e~~e~~-~~~~e~~~~~~~~~v~~e~~~~~~~~~~~~~g~~~~~~~~y~  275 (323)
T 3ee4_A          197 LPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYS  275 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCCSTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             9618999999980488999999999999986395030-699999999999999999999886277766799999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             9999999997697867898788867999972366784767321222244302
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAG  132 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~~~~~~~~~~nFFE~r~~~Y~k~~~  132 (136)
                      +|++|+||+.+|+++.|+...+|++|..    ..+++||||+|+|+|+|||+
T Consensus       276 ~~~~~~~l~~lg~~~~~~~~~~~~~~~~----~~~~~nFFe~~~~~Y~~~~a  323 (323)
T 3ee4_A          276 TDKGMRRFGTISNARGRPVAEIDVDYSP----AQLEDTFADEDRRTLAAASA  323 (323)
T ss_dssp             HHHHHHHHHHHHTTTTCCGGGTCC----------------------------
T ss_pred             HHHHHHHCCCCCCCCCCCHHHCCCCCCH----HHHHHHHHHHHHHHHHHHCC
T ss_conf             9999998799422346984433676897----99999988989999876149


No 11 
>>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} (A:161-311)
Probab=99.94  E-value=3.5e-27  Score=198.73  Aligned_cols=100  Identities=28%  Similarity=0.575  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989999999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      |+|+|++|+||+|||++|+.|++.+++++++++|       .+.+++++++||++|.+|++++|+.+.+|++++++++||
T Consensus        51 m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~~-------~~~~~~~~~eave~E~~~~~~~~~~~~~g~~~~~i~~yi  123 (151)
T 2o1z_A           51 LHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYI  123 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             2238999999940256668899999999874599-------999999999999999999999667986899999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             9999999997697867898788867999
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMS  108 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~  108 (136)
                      +|+||+||.+||++++|++ +||+|||+
T Consensus       124 ~y~an~~l~~LG~~~~y~~-~nP~~w~e  150 (151)
T 2o1z_A          124 EFVADRLLECLGSPKIFHA-KNPFNWMD  150 (151)
T ss_dssp             HHHHHHHHHHTTCCCSSCC-CCCCTTTT
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCCCCC
T ss_conf             9999999997799998999-99986515


No 12 
>>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A (A:)
Probab=99.18  E-value=1.4e-11  Score=96.32  Aligned_cols=118  Identities=9%  Similarity=0.028  Sum_probs=98.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHH
Q ss_conf             96525578998987699999999999984222423302433799988789999999999887469872387989-99999
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQY   79 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~-~~~~Y   79 (136)
                      |||+++++++|+|||+.|+.|++.+++.+..+.|....+.+.+.+.+++..++..|..+.++++.  .+|++.. .+..|
T Consensus       213 ~p~~~~~~~~i~rDE~~H~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~Gl~~~~~~~~~  290 (336)
T 3chh_A          213 QPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLELN--AAGIRGAEEIVGD  290 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCCTHHHHHHHH--HHTCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HCCCCHHHHHHHH
T ss_conf             84999999999999999999999999999986999999999999999999998613247799998--8699879999998


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCC-CCHHHH
Q ss_conf             9999999999769786789878886799997-23667847673-212222
Q 537021.9.peg.7   80 MQFIANRRCHQIGLEPLFKYTENPFPWMSEV-IDLKKEKNFFE-TRVTEY  127 (136)
Q Consensus        80 i~y~an~rL~~lGl~~~f~~~~nP~~W~~~~-~~~~~~~nFFE-~r~~~Y  127 (136)
                      ++|.+|+++.++|++       ++++|+++. +.+..-..|++ ..+.+|
T Consensus       291 ~~~~~~~~~~~~~~~-------~~~~~l~~~Gl~~~~~~~~~~~~~l~~~  333 (336)
T 3chh_A          291 LRSTAGGTRLVRDFS-------GARKMVEQLGLDDAVDFDFPERPDWSPH  333 (336)
T ss_dssp             CC-------CCCBCH-------HHHHHHHHTTCTTTCCCCCCCCCCC---
T ss_pred             HHCHHHHHHHHHHHH-------HHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             729587899999888-------8999999848988999986768887799


No 13 
>>1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=91.52  E-value=0.36  Score=28.08  Aligned_cols=89  Identities=15%  Similarity=0.019  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             6525578998987699999999999984222423302433799988789999---9999998874698723879899999
Q 537021.9.peg.7    2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVGLNAPSCEQ   78 (136)
Q Consensus         2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eav---e~E~~~~~~~~~~~~~Gl~~~~~~~   78 (136)
                      |.+.++...|++||.-|..|+..+++.+.+.+|...-..    +..++....   .....|.+..--..-.|+.   -..
T Consensus       176 Pvl~~i~~~Ia~DE~rH~~f~~~~~~~~l~~~p~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y---~~~  248 (275)
T 1za0_A          176 PILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAA----IAARAADLDVLGADIEAYRDKLQNVADAGIF---GKP  248 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH----HHHHHHHCCCTTTTSTTCHHHHHHHHHTTSS---SHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC---CHH
T ss_conf             799999999988899999999999999986580879999----9999970799888787678999999996899---889


Q ss_pred             HHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999976978678
Q 537021.9.peg.7   79 YMQFIANRRCHQIGLEPLF   97 (136)
Q Consensus        79 Yi~y~an~rL~~lGl~~~f   97 (136)
                      +..-+....++.+|+.++=
T Consensus       249 ~~~~v~~~~~~~~~~~~~~  267 (275)
T 1za0_A          249 QLRQLISDRITAWGLAGEP  267 (275)
T ss_dssp             HHHHHHHHHHHHTTCTTCG
T ss_pred             HHHHHHHHHHHHHCCCCHH
T ss_conf             9999999999982888713


No 14 
>>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} (A:)
Probab=88.74  E-value=1.9  Score=23.34  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHH-HHHHHH
Q ss_conf             557899898769999999999998422242330243379998878999999999988746987-238798999-999999
Q 537021.9.peg.7    5 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC-EQYMQF   82 (136)
Q Consensus         5 ~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~-~~Yi~y   82 (136)
                      .+|.+=..+||.+|+.||..-++.-.        +..++++.+.-++..-+-..-++.+-.+. ++||.++.+ .+|+--
T Consensus       148 RkITegVVkDEY~HLN~Ge~WLk~~f--------~~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~  219 (244)
T 2oc5_A          148 RKITEGVVKDEYTHLNYGEAWLKANL--------ESCREELLEANRENLPLIRRXLDQVAGDAAVLQXDKEDLIEDFLIA  219 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             88877676436766015899999999--------9999999998885064999999999988999768899999999999


Q ss_pred             HHHHHHHHCCCC
Q ss_conf             999999976978
Q 537021.9.peg.7   83 IANRRCHQIGLE   94 (136)
Q Consensus        83 ~an~rL~~lGl~   94 (136)
                      . ...|.+||+.
T Consensus       220 Y-~eAL~~IGf~  230 (244)
T 2oc5_A          220 Y-QESLTEIGFN  230 (244)
T ss_dssp             H-HHHHHHHTCC
T ss_pred             H-HHHHHHCCCC
T ss_conf             9-9999975975


No 15 
>>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A (A:156-321)
Probab=88.52  E-value=1.3  Score=24.49  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf             525578998987699999999999984222423
Q 537021.9.peg.7    3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPH   35 (136)
Q Consensus         3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~   35 (136)
                      =++++-..|++||..|..|...++..+..-+|.
T Consensus        37 vl~~i~~~IA~DE~RH~~fY~~~v~~~le~dPd   69 (166)
T 2uw1_A           37 KLAHICGSIASDEKRHATAYTKIVEKLAEIDPD   69 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             999999998778999999999999999843817


No 16 
>>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A (A:1-349,A:476-500)
Probab=71.22  E-value=7.8  Score=19.29  Aligned_cols=90  Identities=18%  Similarity=0.084  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCC-HHHHHH
Q ss_conf             255789989876999999999999842224233024337999887899999999998----874698723879-899999
Q 537021.9.peg.7    4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA----HETMPKGFVGLN-APSCEQ   78 (136)
Q Consensus         4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~----~~~~~~~~~Gl~-~~~~~~   78 (136)
                      ++.+++.+..||.-|...+..+++.+..+...   +.+++.+-..+-.+...=..+.    ++..+....-.+ .+.+.+
T Consensus       220 ~~~l~~~~~~de~rH~~~g~~ll~~l~~~~nr---~~lQ~ald~w~~ra~~af~~~~~~~~d~~~~~~~~~~~~~e~~~d  296 (374)
T 3ge3_A          220 FANLISSIQTDESRHAQQGGPALQLLIENGKR---EEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYE  296 (374)
T ss_dssp             HHHHHHHHHHHHHHHGGGHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99999999889999998589999999967766---999999999999889999988888888448663225349999999


Q ss_pred             HHHHHHHHHHHHCCCCCC
Q ss_conf             999999999997697867
Q 537021.9.peg.7   79 YMQFIANRRCHQIGLEPL   96 (136)
Q Consensus        79 Yi~y~an~rL~~lGl~~~   96 (136)
                      -+.=....+|..+||..+
T Consensus       297 ~~~~~~~~~L~~lGL~~P  314 (374)
T 3ge3_A          297 WIIGQFERSLIDLGLDKP  314 (374)
T ss_dssp             HTTTTHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             988999999998279986


No 17 
>>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, four-helix bundle, domain swapping; 1.70A {Sulfolobus tokodaii str} (A:)
Probab=57.71  E-value=14  Score=17.65  Aligned_cols=63  Identities=14%  Similarity=0.013  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9652557899898769999999999998422242330243379998878999999999988746
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM   64 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~   64 (136)
                      .+|++..++-++.+|..|.......+..+-. .|.+......+.+.+++..++..|....+.+-
T Consensus        39 ~~~~~~~f~~~a~eE~~Ha~~l~~~l~~lgg-~p~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~  101 (144)
T 1j30_A           39 YPEIAGLLRSIAEGETAHAFGHLDFIRQGGL-TDPATDKPIGTLEQMIESAIAGETYEWTQMYP  101 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-BCTTTSCBCSSHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             7999999999999999999999999986799-98766667687098999999999999999999


No 18 
>>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, structural genomics; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum ms-1} (A:)
Probab=51.63  E-value=15  Score=17.51  Aligned_cols=103  Identities=12%  Similarity=0.049  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-H-------------HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6525578998987699999999999984222423302-4-------------3379998878999999999988746987
Q 537021.9.peg.7    2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-K-------------EFQQKSRTMLHEATLLEIAYAHETMPKG   67 (136)
Q Consensus         2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~-~-------------~~~~~i~~~~~eave~E~~~~~~~~~~~   67 (136)
                      ++++...+-++.+|.-|.......++.+-...+.... +             .....+.+++..|+..|.+-+...... 
T Consensus        37 ~~~~~~f~~~a~eE~~Ha~~l~~~l~~lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~~-  115 (167)
T 2oh3_A           37 LDTATVFRDXARFSTLHGDEIKQRSRALELPKLXSWQYRWKTPPEVGDENDIHYLXTPYHALRYARDNEIRGXEYYKEA-  115 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGGTSCCCCCCSSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             9999999999999999999999998735898641134320110343211002245799999999999999999999999-


Q ss_pred             CCCCCHHHHHHHHHHHH----------HHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             23879899999999999----------9999976978678987888679
Q 537021.9.peg.7   68 FVGLNAPSCEQYMQFIA----------NRRCHQIGLEPLFKYTENPFPW  106 (136)
Q Consensus        68 ~~Gl~~~~~~~Yi~y~a----------n~rL~~lGl~~~f~~~~nP~~W  106 (136)
                      .-..+-..+++.++.++          ...+..+.-...+... ....|
T Consensus       116 a~~~~D~~~~~~l~~i~~~E~~H~~~l~~~l~~~~~~~~~~~~-~~~~~  163 (167)
T 2oh3_A          116 AANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSITWSE-DADPA  163 (167)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC---------
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCC
T ss_conf             9886898899999999999999999999999875789987455-89876


No 19 
>>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} (A:1-90)
Probab=51.21  E-value=18  Score=16.97  Aligned_cols=28  Identities=14%  Similarity=0.256  Sum_probs=16.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5255789989876999999999999842
Q 537021.9.peg.7    3 GIAEQYQYIMRDESLHLNFGIDVINQIK   30 (136)
Q Consensus         3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~   30 (136)
                      .+.++...++.+|..|......++..+.
T Consensus        50 ~~k~~f~~LA~eE~~H~~~l~~ly~~l~   77 (90)
T 2fzf_A           50 ALKEKINWLAEEEKKHEALLRKLYSQMF   77 (90)
T ss_dssp             THHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             7999999999999999999999998718


No 20 
>>3hl1_A Ferritin like protein; NP_419375.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.95A {Caulobacter vibrioides} (A:)
Probab=46.40  E-value=21  Score=16.49  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=25.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5255789989876999999999999842
Q 537021.9.peg.7    3 GIAEQYQYIMRDESLHLNFGIDVINQIK   30 (136)
Q Consensus         3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~   30 (136)
                      ..++.++=|+.+|..|....+++++.|-
T Consensus        42 ~~~~~i~~ia~EEM~H~~~~an~i~aLG   69 (317)
T 3hl1_A           42 VPYRLIQAAVYQEXLHAQLVSNIANAYG   69 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             7999999999999999999999999808


No 21 
>>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} (A:)
Probab=44.55  E-value=7.1  Score=19.56  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=22.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf             652557899898769999999999998422242
Q 537021.9.peg.7    2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENP   34 (136)
Q Consensus         2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p   34 (136)
                      +++.+..+.+++||.-|......+++.+..+.+
T Consensus        48 ~~ikklF~~lA~eE~~H~~~f~~ll~~l~~~~~   80 (345)
T 2e0z_A           48 ENVRKILLDVAREEKAHVGEFMALLLNLDPEQV   80 (345)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf             989999999878899879999999998698999


No 22 
>>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} (A:)
Probab=43.87  E-value=23  Score=16.24  Aligned_cols=63  Identities=13%  Similarity=-0.045  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             96525578998987699999999999984222423302----43379998878999999999988746
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETM   64 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~----~~~~~~i~~~~~eave~E~~~~~~~~   64 (136)
                      ++|+++..+-++.+|..|.......++.+-.. |.+.+    ......+.+++..+++.|..-++.+-
T Consensus        50 ~~~~a~~f~~~A~eE~~Ha~~l~~~l~~~gg~-~~~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~y~  116 (176)
T 1vlg_A           50 FKGFAHWMKKQAQEELTHAMKFYEYIYERGGR-VELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIY  116 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             67799999999999999999999999982898-73688778877779889999999999999999999


No 23 
>>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} (B:39-395)
Probab=36.37  E-value=30  Score=15.49  Aligned_cols=103  Identities=3%  Similarity=-0.166  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             255789989876999999999999842224233---02433799988789999999999887469872387989999999
Q 537021.9.peg.7    4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~---~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      ++.++..+..||.-|...+..+++.+..+.|+.   ....+...+..-+-.+...=..++-....  ..+-.....++.+
T Consensus       242 ~~~l~~s~q~d~~rh~~~~~alvk~~l~~dp~~~~~N~~~l~~W~~~w~~~~~~Al~~l~~~~~~--~~~~~~~s~~e~~  319 (357)
T 1mhy_B          242 TPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLASSVAALKDFVGLYAK--VEKVAGATDSAGV  319 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG--SCCCTTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCHHHH
T ss_conf             69999988889999999999999999855973236689999999999999999999986787514--7731223458999


Q ss_pred             HHHHHHHHHHCCCCCC--CCCCCCCHHHHHH
Q ss_conf             9999999997697867--8987888679999
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPL--FKYTENPFPWMSE  109 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~--f~~~~nP~~W~~~  109 (136)
                      +=....++..+|+..+  |+.+ -|-.|...
T Consensus       320 ~e~i~~~~~~~~l~~le~~Glk-~P~~~~~~  349 (357)
T 1mhy_B          320 SEALQRVFGDWKIDYADKIGFR-VDVDQKVD  349 (357)
T ss_dssp             HHHHHHHHHHHHHHTHHHHTCC-CCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC-CCHHHHHH
T ss_conf             9999999999998778860886-74999999


No 24 
>>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (B:31-384)
Probab=34.50  E-value=32  Score=15.30  Aligned_cols=102  Identities=4%  Similarity=-0.150  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             255789989876999999999999842224233---02433799988789999999999887469872387989999999
Q 537021.9.peg.7    4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM   80 (136)
Q Consensus         4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~---~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi   80 (136)
                      ++.++..+..||.-|...+..+++.+..+.|+.   ..+.++..+-.-+-.+...=..++--....+..--+.+...+-+
T Consensus       242 ~~~l~~s~q~D~~rh~~~~~alvk~~l~~dp~~~~~Nr~~lq~wid~w~~ra~~Al~~l~g~~~~y~~~~~~~~~~~~~~  321 (354)
T 1mty_B          242 TPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASL  321 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGSCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             79999999999999998999999999854863306689999999999999999999986788741787889989999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             9999999997697867898788867999
Q 537021.9.peg.7   81 QFIANRRCHQIGLEPLFKYTENPFPWMS  108 (136)
Q Consensus        81 ~y~an~rL~~lGl~~~f~~~~nP~~W~~  108 (136)
                      .-....++..+|++--.  + -|-.|-.
T Consensus       322 ~~~~~~~~~~~~l~~Gl--~-~p~~~~~  346 (354)
T 1mty_B          322 YRVVDDWIEDYASRIDF--K-ADRDQIV  346 (354)
T ss_dssp             HHHHHHHHHHTGGGGTC--C-CCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCE--E-EEHHHHH
T ss_conf             99998999863101242--5-2199999


No 25 
>>1krq_A Ferritin; H-chain like four-helix bundle, metal binding protein; 2.70A {Campylobacter jejuni} (A:)
Probab=32.38  E-value=34  Score=15.08  Aligned_cols=61  Identities=13%  Similarity=0.015  Sum_probs=37.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             96525578998987699999999999984222423302----433799988789999999999887
Q 537021.9.peg.7    1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHE   62 (136)
Q Consensus         1 M~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~----~~~~~~i~~~~~eave~E~~~~~~   62 (136)
                      .+|++...+-++.+|..|.......++.+-. .|.+.+    ......+.+++..+.+.|.+-+..
T Consensus        36 ~~~~a~~f~~~A~eE~~Ha~~l~~~l~~lgg-~p~~~~~~~~~~~~~~~~~~l~~~l~~E~~~~~~  100 (167)
T 1krq_A           36 LDGAGAFLFAHASEESDHAKKLITYLNETDS-HVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKS  100 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             0789999999989999999999999998278-8726888776556798778999999999999999


No 26 
>>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli K12} (A:82-219)
Probab=28.54  E-value=40  Score=14.66  Aligned_cols=84  Identities=10%  Similarity=0.073  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCHH
Q ss_conf             25578998987699999999999984222423302433799988789999999999887469872---------387989
Q 537021.9.peg.7    4 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF---------VGLNAP   74 (136)
Q Consensus         4 ~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~---------~Gl~~~   74 (136)
                      ++.+..-+.++|.-|..++...+..|..-.+         +-++.+++|++.=-.++...|+.+.         ++.+.+
T Consensus        39 La~ia~K~~kEe~yH~~h~~~w~~rL~~gt~---------Es~~rmq~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~  109 (138)
T 1otk_A           39 LAAISAKAIKEARYHLRFSRGWLERLGNGTD---------VSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPR  109 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH---------HHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHH
T ss_conf             9999999989999999999999999985689---------9999999999999898866447782689998878989879


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999999997697867
Q 537021.9.peg.7   75 SCEQYMQFIANRRCHQIGLEPL   96 (136)
Q Consensus        75 ~~~~Yi~y~an~rL~~lGl~~~   96 (136)
                      .+.+--.-.....|..+|+.-+
T Consensus       110 ~Lr~~w~~~v~~~l~~agL~~P  131 (138)
T 1otk_A          110 TLRAAWEAEVFAGINEATLNVP  131 (138)
T ss_dssp             GGHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999999998089999


No 27 
>>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:81-203)
Probab=27.10  E-value=42  Score=14.49  Aligned_cols=50  Identities=4%  Similarity=-0.011  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             78999999999988746987238798999999999999999976978678
Q 537021.9.peg.7   48 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF   97 (136)
Q Consensus        48 ~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL~~lGl~~~f   97 (136)
                      --+++++.=.-.....+..++...+++.+.+.+++.....=+.||+|..-
T Consensus        69 yP~E~ae~ll~l~n~~ld~~~~~~~~ee~~~ri~~~~~~ler~lG~~~~~  118 (123)
T 3b81_A           69 YPLETAEIILTLSHFYLDEDLFKWKKEDXSLKLTAFKETLIKILDADEDT  118 (123)
T ss_dssp             CHHHHHHHHHHHHHTTTCHHHHTCCGGGHHHHHHHHHHHHHHHHTCCTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999999999999999873374329999999999999986899661


No 28 
>>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrolase; 2.40A {Helicobacter pylori} PDB: 2rd3_A (A:)
Probab=24.90  E-value=46  Score=14.23  Aligned_cols=23  Identities=9%  Similarity=0.049  Sum_probs=9.6

Q ss_pred             HHHHHHHHCCC--CCCCCCCCCHHH
Q ss_conf             67999972366--784767321222
Q 537021.9.peg.7  104 FPWMSEVIDLK--KEKNFFETRVTE  126 (136)
Q Consensus       104 ~~W~~~~~~~~--~~~nFFE~r~~~  126 (136)
                      ..|+..+.+..  .+++.++.-+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~  187 (221)
T 3ibx_A          163 GHWIKGYSSKEFQACVNWNINLLDS  187 (221)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             9999986792069999999999999


No 29 
>>2inp_C Phenol hydroxylase component PHL; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_C (C:217-328)
Probab=24.37  E-value=47  Score=14.17  Aligned_cols=84  Identities=8%  Similarity=-0.033  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             52557899898769999999999998422242330243379998878999999999988746987238798999999999
Q 537021.9.peg.7    3 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF   82 (136)
Q Consensus         3 G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~Yi~y   82 (136)
                      -++.+++....|..-|...+..|++.+..|.|+ ..+-+...+.+-...+...=..|..-+..        ++...-++-
T Consensus        26 ~~~~l~~~~~~d~~r~~~w~~alvk~~~~e~~~-Nr~ll~~W~~~W~~~a~~Al~p~a~~~~~--------~~a~~~a~~   96 (112)
T 2inp_C           26 DVSMLTEFMRDWYKESLRWTNAMMKAVAGESET-NRELLQKWIDHWEPQAYEALKPLAEASVG--------IDGLNEARA   96 (112)
T ss_dssp             GGGGGGHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--------THHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHH
T ss_conf             308999988868999999999999999815800-18999999999999999999987664056--------518999999


Q ss_pred             HHHHHHHHCCCCC
Q ss_conf             9999999769786
Q 537021.9.peg.7   83 IANRRCHQIGLEP   95 (136)
Q Consensus        83 ~an~rL~~lGl~~   95 (136)
                      ....|+..+|+..
T Consensus        97 ~~~~~~~~~GL~~  109 (112)
T 2inp_C           97 ELSARLKKFELQS  109 (112)
T ss_dssp             HHHHHHHTTTCCC
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9999999669998


No 30 
>>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON centre, HAEM Fe-coproporphyrin III cofactor; HET: FEC; 1.95A {Desulfovibrio desulfuricans} (A:)
Probab=23.76  E-value=48  Score=14.09  Aligned_cols=29  Identities=21%  Similarity=0.165  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65255789989876999999999999842
Q 537021.9.peg.7    2 VGIAEQYQYIMRDESLHLNFGIDVINQIK   30 (136)
Q Consensus         2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~   30 (136)
                      +|++...+-++.+|..|..-....+..+-
T Consensus        43 ~~i~~~f~~~a~ee~~ha~~~~e~i~~lg   71 (179)
T 1nfv_A           43 GELAANMKLIAIDEMRHAENFAERIKELG   71 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89999999999999999999999999728


No 31 
>>1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526; structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:)
Probab=21.94  E-value=52  Score=13.86  Aligned_cols=83  Identities=12%  Similarity=0.043  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             65255789989876999999999999842224233024----------------33799988789999999999887469
Q 537021.9.peg.7    2 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----------------EFQQKSRTMLHEATLLEIAYAHETMP   65 (136)
Q Consensus         2 ~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~----------------~~~~~i~~~~~eave~E~~~~~~~~~   65 (136)
                      +++++..+-++.+|.-|......+++.+....+.....                .....+..++..|...|...+...-.
T Consensus        42 ~~~~~~f~~la~eE~~H~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~  121 (157)
T 1vjx_A           42 GEIKKTFLELADQERIHAEIFRKXSDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYE  121 (157)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBCCSBCCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999998627985336777653223477788886115687999999998889999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q ss_conf             87238798999999999999
Q 537021.9.peg.7   66 KGFVGLNAPSCEQYMQFIAN   85 (136)
Q Consensus        66 ~~~~Gl~~~~~~~Yi~y~an   85 (136)
                       -.....-..+...+..+++
T Consensus       122 -~~~~~~d~~~~~~~~~l~~  140 (157)
T 1vjx_A          122 -LKDGLVNSDAQKTVKKIID  140 (157)
T ss_dssp             -HHHHCCSHHHHHHHHHHHH
T ss_pred             -HHHHCCCHHHHHHHHHHHH
T ss_conf             -9987799999999999999


No 32 
>>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A (A:509-666)
Probab=20.10  E-value=48  Score=14.13  Aligned_cols=56  Identities=13%  Similarity=0.113  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             33799988789999--9999998874698723--87989999999999999999769786
Q 537021.9.peg.7   40 EFQQKSRTMLHEAT--LLEIAYAHETMPKGFV--GLNAPSCEQYMQFIANRRCHQIGLEP   95 (136)
Q Consensus        40 ~~~~~i~~~~~eav--e~E~~~~~~~~~~~~~--Gl~~~~~~~Yi~y~an~rL~~lGl~~   95 (136)
                      ++...+..+..+--  +.=..++..+|....+  |++.++...|++-+.....+.+|..+
T Consensus        96 plIk~L~~l~~~~~~~e~~~~~~~~Lyd~A~l~~G~~~edp~~f~~r~~~lL~k~l~~~~  155 (158)
T 2o1u_A           96 PLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDP  155 (158)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC--
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             899999987652877799999999999998986899971699999999999998559995


Done!