RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.75_1
         (136 letters)



>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
           trachomatis [TaxId: 813]}
          Length = 317

 Score =  104 bits (260), Expect = 3e-24
 Identities = 59/107 (55%), Positives = 79/107 (73%), Gaps = 1/107 (0%)

Query: 1   MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
           M+GI EQYQYI+RDE++HLNFGID+IN IK ENP +WT E QQ+   ++  A  LEI YA
Sbjct: 212 MIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYA 271

Query: 61  HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 107
            + +P+G +GL A     Y+Q IA+RR  +IGL+P++  T+NPFPWM
Sbjct: 272 QDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYH-TKNPFPWM 317


>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
           [TaxId: 562]}
          Length = 339

 Score = 89.1 bits (220), Expect = 1e-19
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 1   MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLE 56
           M G A+  + I RDE+LHL     ++N ++             E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 57  IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 109
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++ 
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINT 337


>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
           (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
          Length = 334

 Score = 86.3 bits (213), Expect = 1e-18
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 1   MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
           M G+    + I RDE LH +F   +   +K +      ++       ++ EA  +E  Y 
Sbjct: 234 MPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEK-------IVTEAVEIEQRYF 286

Query: 61  HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 107
            + +P   +G+NA    QY++F+A+R     G +  +K  ENPF +M
Sbjct: 287 LDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPFDFM 332


>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 281

 Score = 76.0 bits (186), Expect = 1e-15
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 1   MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
           M G+    + I RDE LH +F   +   +  +             R ++  A  +E  + 
Sbjct: 186 MPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRV-------REIITNAVRIEQEFL 238

Query: 61  HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 104
            E +P   +G+N    +QY++F+A+R   ++G   +F+  ENPF
Sbjct: 239 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR-VENPF 281


>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
           {Corynebacterium ammoniagenes [TaxId: 1697]}
          Length = 284

 Score = 69.8 bits (170), Expect = 8e-14
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 1   MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
           +   A+  + I+RDES+H  +      Q   +      +E++  +  ++++    EI Y 
Sbjct: 175 LTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYT 234

Query: 61  HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 106
            +      +G      ++++++ AN+  + +G E LF   E    P 
Sbjct: 235 EDIYDD--LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPA 278


>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 283

 Score = 65.9 bits (160), Expect = 1e-12
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 1   MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
           +   A+  + I+RDE++H  +          +   +  +E +  +  +L E    EI Y 
Sbjct: 173 LTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYT 232

Query: 61  HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP--FPWMS 108
                +          + ++ + AN+    +G E LF       NP     +S
Sbjct: 233 EALYAET---GWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282


>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
           (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
          Length = 285

 Score = 65.6 bits (159), Expect = 2e-12
 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 1   MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60
           M G+A   + I RD   + +F   +   ++ +      ++       ++ EA  +E  Y 
Sbjct: 196 MPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEK-------IITEAVEIEKEYY 248

Query: 61  HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 97
             ++P    G++  S   Y++F+A+      G E  +
Sbjct: 249 SNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285


>g1pya.1 d.155.1.1 (A:,B:) Histidine decarboxylase {Lactobacillus
           sp., strain 30a [TaxId: 1591]}
          Length = 310

 Score = 24.8 bits (54), Expect = 2.5
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 57  IAYAHETMPKGFVGLNAPSCEQY 79
           I +A+  M  G +G NA +   Y
Sbjct: 241 IGFAYTMMEPGQIG-NAITVAPY 262


>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 222

 Score = 24.8 bits (54), Expect = 2.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 11  IMRDESLHLNFG 22
           +++DE  HLN+G
Sbjct: 134 VVKDEYTHLNYG 145


>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit
           alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 166

 Score = 23.6 bits (51), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 95  PLFKYTENPFPWMSEVIDLKKEK 117
           P     E+  PW S V D+K+E 
Sbjct: 6   PKLDQLESG-PWPSFVSDIKQEA 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 518,698
Number of extensions: 22008
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 17
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)