RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.75_1 (136 letters) >d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Score = 104 bits (260), Expect = 3e-24 Identities = 59/107 (55%), Positives = 79/107 (73%), Gaps = 1/107 (0%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M+GI EQYQYI+RDE++HLNFGID+IN IK ENP +WT E QQ+ ++ A LEI YA Sbjct: 212 MIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYA 271 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 107 + +P+G +GL A Y+Q IA+RR +IGL+P++ T+NPFPWM Sbjct: 272 QDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYH-TKNPFPWM 317 >d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Score = 89.1 bits (220), Expect = 1e-19 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLE 56 M G A+ + I RDE+LHL ++N ++ E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 57 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 109 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINT 337 >d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Score = 86.3 bits (213), Expect = 1e-18 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M G+ + I RDE LH +F + +K + ++ ++ EA +E Y Sbjct: 234 MPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEK-------IVTEAVEIEQRYF 286 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 107 + +P +G+NA QY++F+A+R G + +K ENPF +M Sbjct: 287 LDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPFDFM 332 >d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Score = 76.0 bits (186), Expect = 1e-15 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M G+ + I RDE LH +F + + + R ++ A +E + Sbjct: 186 MPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRV-------REIITNAVRIEQEFL 238 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 104 E +P +G+N +QY++F+A+R ++G +F+ ENPF Sbjct: 239 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR-VENPF 281 >d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Score = 69.8 bits (170), Expect = 8e-14 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 4/107 (3%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 + A+ + I+RDES+H + Q + +E++ + ++++ EI Y Sbjct: 175 LTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYT 234 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 106 + +G ++++++ AN+ + +G E LF E P Sbjct: 235 EDIYDD--LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPA 278 >d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Score = 65.9 bits (160), Expect = 1e-12 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 + A+ + I+RDE++H + + + +E + + +L E EI Y Sbjct: 173 LTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYT 232 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP--FPWMS 108 + + ++ + AN+ +G E LF NP +S Sbjct: 233 EALYAET---GWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282 >d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Score = 65.6 bits (159), Expect = 2e-12 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 7/97 (7%) Query: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 M G+A + I RD + +F + ++ + ++ ++ EA +E Y Sbjct: 196 MPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEK-------IITEAVEIEKEYY 248 Query: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 97 ++P G++ S Y++F+A+ G E + Sbjct: 249 SNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285 >g1pya.1 d.155.1.1 (A:,B:) Histidine decarboxylase {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 310 Score = 24.8 bits (54), Expect = 2.5 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%) Query: 57 IAYAHETMPKGFVGLNAPSCEQY 79 I +A+ M G +G NA + Y Sbjct: 241 IGFAYTMMEPGQIG-NAITVAPY 262 >d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Length = 222 Score = 24.8 bits (54), Expect = 2.7 Identities = 6/12 (50%), Positives = 10/12 (83%) Query: 11 IMRDESLHLNFG 22 +++DE HLN+G Sbjct: 134 VVKDEYTHLNYG 145 >d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} Length = 166 Score = 23.6 bits (51), Expect = 6.5 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%) Query: 95 PLFKYTENPFPWMSEVIDLKKEK 117 P E+ PW S V D+K+E Sbjct: 6 PKLDQLESG-PWPSFVSDIKQEA 27 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.136 0.422 Gapped Lambda K H 0.267 0.0610 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 518,698 Number of extensions: 22008 Number of successful extensions: 53 Number of sequences better than 10.0: 1 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 17 Length of query: 136 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 60 Effective length of database: 1,364,116 Effective search space: 81846960 Effective search space used: 81846960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (22.5 bits)