HHsearch alignment for GI: peg_753 and conserved domain: COG0587

>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=2451.72  Aligned_cols=1005  Identities=49%  Similarity=0.809  Sum_probs=936.0

Q ss_pred             CCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf             98813343314447644329989999999978998899811651774999999999769963899999985476643344
Q 537021.9.peg.7    8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN   87 (1033)
Q Consensus         8 ~~~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~   87 (1033)
T Consensus         1 ~~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~----   76 (1139)
T COG0587           1 EMSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF----   76 (1139)
T ss_pred             CCCEEECCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHCCCEEEEEEEEEEECCCCC----
T ss_conf             9942641214543131245689999999998699769995277632389999999986981775207997246544----


Q ss_pred             CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHCCCCEEEECCCCCCHHHHHHHCCCHHH
Q ss_conf             56566667753999956968999999999899732487787400789998-63489889981976796788887799789
Q 537021.9.peg.7   88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQV  166 (1033)
Q Consensus        88 ~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~-e~~~egLIvlsg~~~g~i~~~l~~~~~~~  166 (1033)
T Consensus        77 ----~~~~~~~l~llAkn~~GY~nL~~LsS~a~~~g-~~~~~~i~~~~l~~~-~~eglI~~s~~~~g~v~~~ll~~~~~~  150 (1139)
T COG0587          77 ----RGRERPHLLLLAKNNEGYKNLVKLSSIAYLEG-EKGKPRIDKDLLELE-YSEGLIALSACLGGEVPQLLLKGNEDL  150 (1139)
T ss_pred             ----CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHH-CCCCEEEECCCCCCCHHHHHHCCCHHH
T ss_conf             ----55677527999678899999999988998547-678864488997433-238818941544553214441365889


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             999999998765986899994399-1158999999999998189899808830078788999987668846985765310
Q 537021.9.peg.7  167 AEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR  245 (1033)
Q Consensus       167 a~~~l~~l~~~Fgd~~ylEl~~~~-~~e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~l~~~~~  245 (1033)
T Consensus       151 a~~~~~~~~~~Fg~~~ylelq~~~~~~~~~~~~~~~~la~~~~ip~vaTndv~y~~~~d~~ahd~~l~i~~~~~l~~~~~  230 (1139)
T COG0587         151 AEEALAWYKEVFGDDFYLELQRHGSPEDRRRNDALIKLARELGIPLVATNDVHYINPEDREAHDALLCIRTGKTLSDDKR  230 (1139)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999998076406764115670667889999999987499868736531158113789999999863980056643


Q ss_pred             CCC-CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             024-5343234347887512203589987886411100013322102345557568877689889998765410342012
Q 537021.9.peg.7  246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA  324 (1033)
Q Consensus       246 ~~~-~~~~yLks~eEM~~~f~~~peAi~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~  324 (1033)
T Consensus       231 ~~~~~~e~ylks~eeM~~lf~d~peAl~nT~~Ia~rc~~~l~~~-~~lP~fp~~~~----~~~~~~L~~~~~~Gl~~r~~  305 (1139)
T COG0587         231 LRYSSAEQYLKSPEEMARLFADIPEALANTVEIAERCNFELDLG-PRLPNFPTPPG----KSAAEYLRKLAEEGLEERYK  305 (1139)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHCC-CCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHH
T ss_conf             02467325569999999986605999999999998522242026-65787999888----89899999999977999875


Q ss_pred             CCCCCCCC--CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf             46432457--8389999988778989860630557888999998510476433444420466776554403756333231
Q 537021.9.peg.7  325 QGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL  402 (1033)
Q Consensus       325 ~~~~~~~~--~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~L  402 (1033)
T Consensus       306 ~~~~~~~~~~~~~~y~~RL~~EL~vI~~mgf~~YFLiV~D~I~~Ak~~gI~vGPGRGSaAGSLVaY~L~IT~IDPl~~~L  385 (1139)
T COG0587         306 ERLAPEEVPEKVREYKERLEYELDVINKMGFPGYFLIVWDFIKFARDNGIPVGPGRGSAAGSLVAYALGITDIDPLKYDL  385 (1139)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             22476455323688999999999999866999857729999999997898647987625768999984688768532575


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf             05676210014578753336568789999999830380215542207787788999999975279988988654310145
Q 537021.9.peg.7  403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND  482 (1033)
Q Consensus       403 lFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~  482 (1033)
T Consensus       386 LFERFLNpeR~smPDIDIDf~~~rReeVI~YV~ekYG~d~VAqIiTFgt~~aKaaiRDVgRvlg~~~~~~d~lsK~Ip~~  465 (1139)
T COG0587         386 LFERFLNPERVSMPDIDIDFCDERREEVIQYVYEKYGRDRVAQIITFGTLRAKAAIRDVGRVLGLPYGEVDKLAKLIPFW  465 (1139)
T ss_pred             CHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf             06540698789998777177623499999999998551217888641005688999989987099889999997269986


Q ss_pred             CCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCCCCCCCEEEEEECHH
Q ss_conf             89824434452298878864307420268898720112210024474403352566666200123676886688510213
Q 537021.9.peg.7  483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW  562 (1033)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~  562 (1033)
T Consensus       466 ~~~~-l~~a~~~~~~l~~~~~~d~~~~~~~e~A~kLeGlpRh~s~HAaGvVIs~~~L~~~vPl~~~~~~~-~vtQ~dm~d  543 (1139)
T COG0587         466 PGLT-LAVAYEEEPELKELLDSDPEVKRLIELARKLEGLPRHLSTHAAGVVISDDPLTDLVPLYKDKNRD-GVTQYDMDD  543 (1139)
T ss_pred             CCCC-HHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCC-CEEEECHHH
T ss_conf             6650-76653015888865035688999999999964999887876776996388643338805548888-224435387


Q ss_pred             HHHHCCCHHHHHHHCCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCHHH
Q ss_conf             34311232135654178999999998874-02543433234435889987620141012211453478888771740488
Q 537021.9.peg.7  563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE  641 (1033)
Q Consensus       563 ~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~-~~~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~~~~~l~~~~p~~~~  641 (1033)
T Consensus       544 lE~~GLvK~DfLGL~tLT~I~~a~~~I~~~~~~~i~~~~IpldD~~~y~ml~~gdT~GVFQlES~gm~~~l~rlkP~~fe  623 (1139)
T COG0587         544 LEAVGLLKFDFLGLKTLTIIQRALDLIKEKRGIDIDLASIPLDDPKTYEMLAKGDTLGVFQLESRGMKSLLKRLKPDNFE  623 (1139)
T ss_pred             HHHCCCEEEEHHCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCHH
T ss_conf             98747802302054287899999999986359775642088556899999853681589862468999988745998699


Q ss_pred             HHHHHHHHCCCHHHHH--HHHHHHHHCCCCCCCCCCH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf             8876654114113420--0368885046578502696-673341033553001256898878863268413078897620
Q 537021.9.peg.7  642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHP-LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG  718 (1033)
Q Consensus       642 dl~~~~al~RPGp~~~--~~~yi~rk~g~e~~~~~hp-~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ead~lRra~~  718 (1033)
T Consensus       624 Diva~vALyRPGPm~~gmI~~fi~RK~g~e~i~y~~p~~Le~IL~~TYGVivYQEQVMqIAq~~agfSlgeAD~LRRAMg  703 (1139)
T COG0587         624 DIVALVALYRPGPMQGGMIPPFINRKHGREEIEYPHPEPLEPILKETYGVIVYQEQVMQIAQVLAGFSLGEADLLRRAMG  703 (1139)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf             99999974188875779865677545788888889806689874045573652999999999971899426789999871


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             12110167787899999862499999999999999975000133101478889999999999730266677751002354
Q 537021.9.peg.7  719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN  798 (1033)
Q Consensus       719 kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~  798 (1033)
T Consensus       704 KK~~~~m~~~r~~F~~Ga~~~G~~~~~a~~ifd~i~kFA~YGFNkSHAaAYa~isYqtAyLKahYP~eF~aall~s~~~n  783 (1139)
T COG0587         704 KKKAEEMEKQREKFIEGAVKNGYDKEFAEKIFDLIEKFAGYGFNKSHAAAYALLSYQTAYLKAHYPAEFMAALLTSEPMN  783 (1139)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf             47789999999999978987699989999999999988404877289999999999999998717799999997447788


Q ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCC
Q ss_conf             2025899988886368503552334210035319-869850268589698999999999837999997899973482479
Q 537021.9.peg.7  799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL  877 (1033)
Q Consensus       799 ~~~~~~~i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~  877 (1033)
T Consensus       784 ~~k~~~~i~ear~~Gi~VlpPdIN~S~~~f~~~~~~~I~~gL~~IKGvg~~~i~~Iv~~R~~~~~~~~~df~~r~~~~~l  863 (1139)
T COG0587         784 FDKVAQYIQEARRMGIEVLPPDINRSGWDFTVEEKKAIRLGLGAIKGVGEDAIEEIVEARKEKPFKSLEDFCDRIDRKGL  863 (1139)
T ss_pred             CCCHHHHHHHHHHCCCEEECCCCCCCCCCCEECCCCCEEEHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf             62699999999985976737852666776464478727871465568768799999997631577767669987524058


Q ss_pred             CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             98999988867672347903899999899999999988654312777866665555655776668999988899985788
Q 537021.9.peg.7  878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR  957 (1033)
Q Consensus       878 nk~~le~Li~aGAfD~~~~~R~~ll~~i~~~~~~~~~~~~~~~~~q~~LF~~~~~~~~~~~~~~~~~~~~~~e~l~~E~e  957 (1033)
T Consensus       864 ~kr~lE~LikaGAfd~~~~~R~~ll~~~~~~~~~~~~~~~~--~~q~~lF~~~~~~~~~~~~~~~~~~~~~~e~l~~E~e  941 (1139)
T COG0587         864 NKRVLESLIKAGAFDSFGKNRAQLLAALDDLLDAASGTAKN--SGQLSLFGAAAAGESEQVSYVALPEWSEKEKLALEKE  941 (1139)
T ss_pred             CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             78889999974864211157999999999999887665763--1666662112124332124445667886678888888


Q ss_pred             HHCEEECCCCHHHHHHHHHHCCC--CCHHHHHCCCCCCEEEEEEEEEEEEEECCC-CCCEEEEEEEECCCCEEEEEECC
Q ss_conf             72621163855899999987489--768898505589889999999611210158-88769999998497049999539
Q 537021.9.peg.7  958 VLGFYFSGHPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033 (1033)
Q Consensus       958 ~LGf~lS~HPl~~~~~~l~~~~~--~~~~~~~~~~~g~~v~iaG~V~~i~~~~TK-kG~~mafltleD~~g~~e~~iFP 1033 (1033)
T Consensus       942 ~lG~yls~HPl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~vr~~~tk~~G~~~~f~tl~D~~g~~e~v~f~ 1018 (1139)
T COG0587         942 TLGLYLSGHPLDFLYEDLLARGLTPIRLLDLVED--GRRVVLAGGIVAVRQRPTKAKGNKMAFLTLEDETGILEVVVFP 1018 (1139)
T ss_pred             HHCEECCCCCCHHHHHHHHHCCCCCCCHHHHHCC--CCEEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCEEEEECH
T ss_conf             7600156788547899998602332014554014--6226999999998996326789779999983378857999868