>TIGR00594 polc DNA polymerase III, alpha subunit; InterPro: IPR004805 All proteins in this family for which functions are known are DNA polymerases. The group defines the alpha subunit of DNA polymerase III (2.7.7.7 from EC). DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.; GO: 0003889 alpha DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0005737 cytoplasm.

Probab=100.00 E-value=0 Score=1985.66 Aligned_cols=1018 Identities=45% Similarity=0.741 Sum_probs=947.9 Q ss_pred CHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC---- Q ss_conf 1334331444764432998999999997899889981165177499999999976996389999998547664334---- Q 537021.9.peg.7 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT---- 86 (1033) Q Consensus 11 FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~---- 86 (1033) T Consensus 1 f~hlh~h~~yslldga~~~~~l~~~a~~~g~~~~~~tdhgn~~Ga~~fy~~~~~~gikPiiG~e~y~~~~~~~~~~~~lw 80 (1108) T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNLFGAVEFYKACKAEGIKPIIGCEAYVAPGSRFDKKRILW 80 (1108) T ss_pred CCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEECCEEEECCCCCHHHCCCCC T ss_conf 93210135401343354468999999981884023204530233688887653067862221223312563011000002 Q ss_pred ----C--CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHCCCCEEEECCCCCCHHHH Q ss_conf ----4--565666677539999569689999999998997324877---8740078999863489889981976796788 Q 537021.9.peg.7 87 ----N--QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 (1033) Q Consensus 87 ----~--~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~---~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~ 157 (1033) T Consensus 81 gdp~~~~~d~~~~~~~~hl~~lak~~~Gy~nl~~l~~~~~~~g~~~g~~~~p~~d~~~l~~-~~eGli~~~~c~~G~~~~ 159 (1108) T TIGR00594 81 GDPTKKSDDESLGKEAYHLILLAKNETGYRNLLKLSSLAYLEGFYGGIFYKPRIDKELLEE-YSEGLIALSACLGGEVPY 159 (1108) T ss_pred CCCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHH-HCCCEEEECCCCCCHHHH T ss_conf 6876542012103310113688426532256888877765400023401034448899997-538828861543431577 Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCC-EEEEEECCCHHHH-HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 887799789999999998765986-8999943991158-99999999999818989980883007878899998766884 Q 537021.9.peg.7 158 AFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 (1033) Q Consensus 158 ~l~~~~~~~a~~~l~~l~~~Fgd~-~ylEl~~~~~~e~-~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~ 235 (1033) T Consensus 160 ~~~~~~~~~~~~~~~~~~~~fg~d~~~le~~~~g~~~~~~~~~~~~~~~~~~g~p~~atnd~hy~~~~d~~a~~~l~~~~ 239 (1108) T TIGR00594 160 LLLLGEEREAEEAALWYKELFGDDNFYLELQDHGLPDERVVNEALLELAKELGIPLVATNDVHYINPEDALAHEILLCIQ 239 (1108) T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 87405466789999999873388633664311577056777699999998718861530640004730467889998752 Q ss_pred CCCCCCCCCCCCC-CC--CCCCCCHHHHHHHCCH------HHHHHHHHHHHHHHHH-----HHHHHHHCCCCCC------ Q ss_conf 6985765310024-53--4323434788751220------3589987886411100-----0133221023455------ Q 537021.9.peg.7 236 HSTVVSQKDRPRV-TP--DHYLKNRSEMVSIFSD------LPEALENTVEIARRCS-----FILQVHAPILPRF------ 295 (1033) Q Consensus 236 ~~~~l~~~~~~~~-~~--~~yLks~eEM~~~f~~------~peAi~NT~~IAe~c~-----~~l~~~~~~lP~f------ 295 (1033) T Consensus 240 ~g~~~~d~~~~~~~~~~~~~y~k~~ee~~~lf~~~~~~d~~p~a~~nt~~~a~~~~~~~d~~~~~~~~~~~P~~~~~~~~ 319 (1108) T TIGR00594 240 TGKTLSDPKRLKFKSDPEEFYLKSPEEMAELFADHLPGDEIPEALLNTLEIAEKCNLELDLVDVKLGPPRLPSYLFKKGA 319 (1108) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHHCCC T ss_conf 47655654445688985211237889999985420576310478899999988642210103423787536403431256 Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC Q ss_conf -575688776898899987654103420124643---2457838999998877898986063055788899999851047 Q 537021.9.peg.7 296 -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 (1033) Q Consensus 296 -~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~~~~---~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~g 371 (1033) T Consensus 320 ~~~~~~---~~~~~~yl~~~~~~Gl~~r~~~~~~~~~~~~~~~~~y~erl~~el~~i~~~gf~~yflivwd~i~~a~~~g 396 (1108) T TIGR00594 320 YQIPPD---FTSSEDYLEHLAEEGLRERLALGPPGEFERAKDRAEYKERLEYELDVINKMGFPGYFLIVWDFIKWAKDNG 396 (1108) T ss_pred CCCCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC T ss_conf 567888---87548899999987677530467876332210104678888888999861687506788999999887668 Q ss_pred C-CCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHH Q ss_conf 6-433444420466776554403756333231056762100145787533365687899999998303802155422077 Q 537021.9.peg.7 372 I-PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 (1033) Q Consensus 372 I-~vGpGRGSAagSLVaY~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~ 450 (1033) T Consensus 397 i~pvGPGrGs~aGslvay~l~itd~dP~~~~llferflnPer~s~Pd~d~dfc~~~r~~~i~y~~~~yG~d~vaq~itfg 476 (1108) T TIGR00594 397 IRPVGPGRGSGAGSLVAYALKITDIDPLKHGLLFERFLNPERISMPDIDIDFCDERRDEVIEYVAEKYGKDNVAQIITFG 476 (1108) T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHEEECC T ss_conf 70047876640467888876403546432231112104743245774434445330579999999841552100012201 Q ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCCCCHH-HHHCC-------------------HHHHHHHHCCCCCH Q ss_conf 87788999999975-27998898865431014589824434-45229-------------------88788643074202 Q 537021.9.peg.7 451 SLQAKAALRDVGRA-LQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADD-------------------SRFREARLADPSVD 509 (1033) Q Consensus 451 t~~~k~aird~~r~-~g~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~ 509 (1033) T Consensus 477 ~~~~k~~~~dv~r~~~~~p~~~~d~~~k~~P~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~ 556 (1108) T TIGR00594 477 TLKAKAALRDVGRVHLDIPYAEADKLAKLIPPGPGLWLTLKEALEASPEGPLWELGEHRTDIYDEEPQLKELYEEDPEVK 556 (1108) T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHH T ss_conf 00034677655554227866678888873687567642122111455125787612100102333567766522678899 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEE-CCCCHHHHEECCCCCCCCCEEEEEECHHHHHHCCCHHHHHHHCCHHHHHHHHHH Q ss_conf 6889872011221002447440335-256666620012367688668851021334311232135654178999999998 Q 537021.9.peg.7 510 RLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 (1033) Q Consensus 510 ~~~~~a~~leg~~r~~~~Ha~Gvvi-~~~~l~~~~p~~~~~~~~~~~~q~d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~~ 588 (1033) T Consensus 557 ~~~~~a~~leg~~r~~~~haag~v~~~~~pl~~~~Pl~~~~~~g~~~tq~~~~~~e~~gl~k~dflGl~~lt~~~~~~~~ 636 (1108) T TIGR00594 557 ELIDMALKLEGLNRNAGVHAAGVVICSPEPLTDYVPLYKDEEGGAISTQYDMDDLEDLGLLKMDFLGLKTLTLIKDALEL 636 (1108) T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCEEEECCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHH T ss_conf 99999986246653333110146751764100046630156677124113634343214301111110256788999999 Q ss_pred HHH-HC----CCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH-H--HHHH Q ss_conf 874-02----54343323443588998762014101221145347888877174048888766541141134-2--0036 Q 537021.9.peg.7 589 LAQ-RG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-D--NIVV 660 (1033) Q Consensus 589 i~~-~~----~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~~~~~l~~~~p~~~~dl~~~~al~RPGp~-~--~~~~ 660 (1033) T Consensus 637 ~~~~~g~~~~~~~~~~~~p~dd~~~~~~l~~g~~~g~fq~es~g~~~~~k~l~P~~~ed~~a~~alyrPGP~~~~g~~~~ 716 (1108) T TIGR00594 637 IRKKRGKNGKIDLDLASIPLDDPKTFKLLQEGDTTGVFQLESRGMKDLLKRLKPDGFEDIIALNALYRPGPMESGGLIPD 716 (1108) T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHH T ss_conf 87624753433344101676523678876346520232203555789996417762467888875148886656665426 Q ss_pred HHHHHCCC-CCCCCC-----CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 88850465-785026-----966733410335530012568988788632684130788976201211016778789999 Q 537021.9.peg.7 661 YNNRKNGK-EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 (1033) Q Consensus 661 yi~rk~g~-e~~~~~-----hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ead~lRra~~kk~~~~~~~~~~~f~~ 734 (1033) T Consensus 717 ~~~rk~g~~~~~~yp~~~~~~~~l~~~l~~tyG~~vyqeq~m~~a~~~~g~~lg~ad~lrra~gkkk~~~~~~~~~~f~~ 796 (1108) T TIGR00594 717 FIDRKHGRVEPIEYPDHPWLHPDLEPILKETYGVIVYQEQVMQIAQRLAGFSLGEADLLRRAMGKKKAEEMAKEREKFVE 796 (1108) T ss_pred HHHHCCCCCCCCCCCCHHHCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 77622685343222210111322476520011333107889999987503565425677765255668899988888875 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHCC Q ss_conf 986249999999999999997500013310147888999999999973026667775100235420-2589998888636 Q 537021.9.peg.7 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-KIKKFCQDARQFN 813 (1033) Q Consensus 735 g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~~~-~~~~~i~e~~~~g 813 (1033) T Consensus 797 g~~~~g~~~~~a~~~~d~~~~fa~ygfnksh~~ay~~~~y~taylka~yp~e~~a~~lt~~~~~~~~k~~~~~~~~~~~g 876 (1108) T TIGR00594 797 GAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGLISYQTAYLKANYPAEFMAALLTSEIDDNESKVAKYIDEAKKLG 876 (1108) T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC T ss_conf 67650788899999999887652234450256677777776666541262788777653024521467899999997738 Q ss_pred CCCCCCCCCCCCEEE-EECCCE-EEEEHHHHCCCCHHHHHHHHHHHH--CCCCCCHHHHHHHCCCCCCCHHHHHHHHHCC Q ss_conf 850355233421003-531986-985026858969899999999983--7999997899973482479989999888676 Q 537021.9.peg.7 814 IQIMPPSVNTPCVDF-KVGDNR-IYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 (1033) Q Consensus 814 i~vl~PdIN~S~~~f-~~~~~~-Ir~Gl~~Ikgvg~~~~~~Ive~r~--~g~f~sl~df~~rv~~~~~nk~~le~Li~aG 889 (1033) T Consensus 877 ~~~lpPd~n~s~~~f~~~~~~~~i~~gl~~~k~~G~~~~~~~~~~r~~~~g~~~~l~d~~~~~~~~~~n~k~~e~l~~~G 956 (1108) T TIGR00594 877 IEVLPPDINKSGRDFTTVEGGGEIRYGLGAIKGVGEGVVKSIIEARENKNGPFKSLADFCNRVDFKKLNKKVLEALIKAG 956 (1108) T ss_pred CEECCCCCCCCCCCCCEECCCCEEEEECHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 54107756656565410126850575100111033367899998752157762027898742563021067788887511 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHH-HHHHHHHHCEEECC Q ss_conf 72347903899999899999999988654-3127778666655556557766--68999988899-98578872621163 Q 537021.9.peg.7 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKN-RTNKHENIFAHEKGTFSDKITL--EKFSVENSSVR-FENEQRVLGFYFSG 965 (1033) Q Consensus 890 AfD~~~~~R~~ll~~i~~~~~~~~~~~~~-~~~~q~~LF~~~~~~~~~~~~~--~~~~~~~~~e~-l~~E~e~LGf~lS~ 965 (1033) T Consensus 957 ~fd~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~g~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~e~e~lG~y~~g 1036 (1108) T TIGR00594 957 AFDSLGPNRKTLLASLDDALDAASRKKKAEEALGQNSLFGALDEGEKPEYVETYPPDEEWSDQELLLKLEKELLGFYVSG 1036 (1108) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEC T ss_conf 21222134889998888999987665567765021111244334643111123212233104789875434451223305 Q ss_pred CCHHHHH---HHHHHCCCC-CHHHHHCCCCCCEEEEEEEEEEEEEEC-CCCCCEEEEEEEECCCCEEEEEEC Q ss_conf 8558999---999874897-688985055898899999996112101-588876999999849704999953 Q 537021.9.peg.7 966 HPLDVYK---PILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 (1033) Q Consensus 966 HPl~~~~---~~l~~~~~~-~~~~~~~~~~g~~v~iaG~V~~i~~~~-TKkG~~mafltleD~~g~~e~~iF 1032 (1033) T Consensus 1037 hPl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~d~~g~~e~~~f 1108 (1108) T TIGR00594 1037 HPLDAYEHLLKLLSNLATPLVALDDLEVREDSKVLVLGVLNSVKKVITTKNGKPMAFLTLEDLTGSIELVVF 1108 (1108) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHEEECCCCCEEEEEEEECCCCCEEEEEC T ss_conf 753689998876542100233343321664310101222333321001025760367775103574433418

HHsearch alignment for GI: peg_753 and conserved domain: TIGR00594