HHsearch alignment for GI: peg_753 and conserved domain: TIGR01259
>TIGR01259 comE comEA protein; InterPro: IPR004787 The comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. comEA and comEC are required for transformability, whereas the products of comEB and of the overlapping comER, which is transcribed in the reverse direction, are dispensable . ComEA has been shown to be an integral membrane protein, as predicted from hydropathy analysis, with its C-terminal domain outside the cytoplasmic membrane. This C-terminal domain possesses a sequence with similarity to those of several proteins known to be involved in nucleic acid transactions including UvrC and a human protein that binds to the replication origin of the Human herpesvirus 4 (Epstein-Barr virus) ..
Probab=96.76 E-value=0.0019 Score=47.63 Aligned_cols=47 Identities=30% Similarity=0.548 Sum_probs=41.1
Q ss_pred EEHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 502685896989999999998-37999997899973482479989999888
Q 537021.9.peg.7 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 (1033)
Q Consensus 837 ~Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df~~rv~~~~~nk~~le~Li 886 (1033)
T Consensus 72 ~EL~~l~GiGP~kA~aIi~YRe~nG~F~SvddL~-kV--sGIG~k~~eKLk 119 (124)
T TIGR01259 72 EELQALPGIGPAKAKAIIEYREENGAFKSVDDLT-KV--SGIGEKSLEKLK 119 (124)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHH-CC--CCCCHHHHHHHH
T ss_conf 9986369998133799999998569977755500-35--788546687420