HHsearch results for GI: peg_753 and protein with PDBid: 2hnh_A

>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=100.00  E-value=0  Score=2098.63  Aligned_cols=887  Identities=45%  Similarity=0.784  Sum_probs=842.6

Q ss_pred             CCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf             98813343314447644329989999999978998899811651774999999999769963899999985476643344
Q 537021.9.peg.7    8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN   87 (1033)
Q Consensus         8 ~~~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~   87 (1033)
                      .|+||||||||+||+|+|+++|++||++|+++||+||||||||||+|+++|+++|+++|||||+|||+++..+..     
T Consensus         3 ~p~FvhLh~hS~yS~l~g~~~~eelv~~A~~~g~~alAiTD~~nl~G~v~F~~a~~k~gIKpIiG~e~~v~~~~~-----   77 (910)
T 2hnh_A            3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLL-----   77 (910)
T ss_dssp             CCCCCCCCBCCGGGSSSCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEECTTT-----
T ss_pred             CCCCHHHCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCC-----
T ss_conf             899202207775803131369999999999859999999528859789999999997699827788999833877-----


Q ss_pred             CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHHHH
Q ss_conf             56566667753999956968999999999899732487787400789998634898899819767967888877997899
Q 537021.9.peg.7   88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA  167 (1033)
Q Consensus        88 ~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~~a  167 (1033)
                           .+..+|++|||||++||+|||+|+|.+++++.++..|++++++|.+ +++||||+|||..|++.+++..++.+.+
T Consensus        78 -----~~~~~~l~lLAKN~~GykNL~kLiS~a~~~~~~~~~p~i~~~~L~~-~~egLIvlsg~~~g~i~~~l~~~~~~~a  151 (910)
T 2hnh_A           78 -----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE-LNEGLILLSGGRMGDVGRSLLRGNSALV  151 (910)
T ss_dssp             -----TTCCEEEEEEECSHHHHHHHHHHHHHHHHHCCCTTCCCEETTHHHH-SCTTEEEECCGGGSHHHHHHHHTCHHHH
T ss_pred             -----CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-CCCCEEEEECCCCCHHHHHHHCCCHHHH
T ss_conf             -----7870688999799999999999999998704578888688999986-7999799858855789999876999999


Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9999999876598689999439911-589999999999981898998088300787889999876688469857653100
Q 537021.9.peg.7  168 EKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP  246 (1033)
Q Consensus       168 ~~~l~~l~~~Fgd~~ylEl~~~~~~-e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~l~~~~~~  246 (1033)
                      ++++.+|+++||++||+|+|+|+.. ++..+..++++|+++++|+||||||||++++|+++|++|.||+.++++++.++.
T Consensus       152 ~~~i~~l~~iF~~~~yiEl~~~g~~~~~~~n~~li~la~~~~iplVATndv~Y~~~eD~~~~dvl~~I~~~~~l~d~~~~  231 (910)
T 2hnh_A          152 DECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP  231 (910)
T ss_dssp             HHHHHHHHHHCTTSEEEEECCSSCTTHHHHHHHHHHHHHHHTCCEEECCCBCBSSGGGHHHHHHHHHHHHTCCTTCTTSC
T ss_pred             HHHHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999867850896112179855999999999999980996110044124305028899999997329745032221


Q ss_pred             C-CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             2-453432343478875122035899878864111000133221023455575688776898899987654103420124
Q 537021.9.peg.7  247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ  325 (1033)
Q Consensus       247 ~-~~~~~yLks~eEM~~~f~~~peAi~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~  325 (1033)
                      + .++++||||++||.++|+++|+|++||..||++|++.++...+.+|+|++|++     +++++|++++.+|+.+||+.
T Consensus       232 ~~~~~~~ylks~eEM~~lF~d~peal~Nt~~Ia~~c~~~~~~~~~~lP~~~~~~~-----~~~~~l~~l~~~Gl~~r~~~  306 (910)
T 2hnh_A          232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAF  306 (910)
T ss_dssp             CCCCTTCBCCCHHHHHHHTTTCHHHHHHHHHHHHHCCCCCCCSSCCCCCCCCTTS-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHH
T ss_conf             2378643489899999997451999997999988520244305566898876678-----84899999999889998641


Q ss_pred             CCCC---CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf             6432---4578389999988778989860630557888999998510476433444420466776554403756333231
Q 537021.9.peg.7  326 GAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL  402 (1033)
Q Consensus       326 ~~~~---~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~L  402 (1033)
                      ....   .....++|++||++||+||.+|||++|||||||+|+|||++||+||||||||||||||||||||+||||+|||
T Consensus       307 ~~~~~~~~~~~~~~y~~RL~~EL~iI~~~gf~~YFLiv~diV~~Ak~~gi~vGpgRGSaagSLVaylLgIT~VDPi~~~L  386 (910)
T 2hnh_A          307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL  386 (910)
T ss_dssp             HCCSHHHHHHHSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCBCSCCTTGGGCHHHHHTTSSCSCTTTTTC
T ss_pred             CCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCHHCCC
T ss_conf             26411220103499999999999999868980999999999999997894524688814889999997176779020388


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf             05676210014578753336568789999999830380215542207787788999999975279988988654310145
Q 537021.9.peg.7  403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND  482 (1033)
Q Consensus       403 lFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~  482 (1033)
                      +|||||||+|++|||||+||++++|++|++|+++|||.++||+|+||+|+++|+|+|||||++|+|+.++|+++|+||..
T Consensus       387 lFERFLn~~R~~~PDID~Df~~~~r~~v~~y~~~~yG~~~va~i~Tf~t~~~ksA~rdv~r~~g~~~~~~~~i~~~i~~~  466 (910)
T 2hnh_A          387 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD  466 (910)
T ss_dssp             CGGGTSCTTSCCCCCCCCEECGGGHHHHHHHHHHHHCGGGEEEECCEEECCHHHHHHHHHHHTTCCHHHHHHHHTTSCCC
T ss_pred             CHHHHCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             79997487667778888662211319999999999485514885310023688999999998589999999998526766


Q ss_pred             CCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCCCCCCCEEEEEECHH
Q ss_conf             89824434452298878864307420268898720112210024474403352566666200123676886688510213
Q 537021.9.peg.7  483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW  562 (1033)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~  562 (1033)
                      ++.... .+...+++++.....++.++.++++|++|||++||+|+||||||||++||.+++|++++.+++.++|||||++
T Consensus       467 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~leG~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~  545 (910)
T 2hnh_A          467 PGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD  545 (910)
T ss_dssp             TTCCHH-HHHHHCTHHHHHHHHCHHHHHHHHHHHHHTTCEEEECSSCCEEEECSSCGGGTCCEECCTTSCSCEESSCHHH
T ss_pred             CCCCHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             686456-6666465668877632589999999988258744434567879983887431355444788870587304753


Q ss_pred             HHHHCCCHHHHHHHCCHHHHHHHHHHHHHH-C----CCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCC
Q ss_conf             343112321356541789999999988740-2----54343323443588998762014101221145347888877174
Q 537021.9.peg.7  563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP  637 (1033)
Q Consensus       563 ~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~~-~----~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~~~~~l~~~~p  637 (1033)
                      +|++||+|||||||+|||+|++++++|+++ +    ..+|+..||+||++||+||++|+|.||||+||+|||++|++++|
T Consensus       546 ~e~~gllK~D~Lgl~~lt~i~~~~~~i~~~~~~~~~~~~~~~~ip~~D~~~~~l~~~g~t~Gifq~es~~~~~~l~~~~P  625 (910)
T 2hnh_A          546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQP  625 (910)
T ss_dssp             HHHTTCEEEEECCCCHHHHHHHHHHHHHHTTTTTTCCCCCGGGCCSCCHHHHHHHHTTCCTTSTTCCSHHHHHHHHHHCC
T ss_pred             HHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             31168731236514469999999999986317667886787548986589999760425578676788799999986599


Q ss_pred             CHHHHHHHHHHHCCCHHHHHHH--HHHHHHCCCCCCCCC-----CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             0488887665411411342003--688850465785026-----966733410335530012568988788632684130
Q 537021.9.peg.7  638 DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA  710 (1033)
Q Consensus       638 ~~~~dl~~~~al~RPGp~~~~~--~yi~rk~g~e~~~~~-----hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ea  710 (1033)
                      ++|+||++++||+||||+++++  .|++|++|+++++|+     ||.|++||++||||||||||||+|++.+||||+++|
T Consensus       626 ~~f~dl~~~~al~Rpgp~~~~~~~~~i~r~~~~~~~~y~~~~~~h~~l~~il~~T~Gv~vyqEqim~i~~~~ag~~~~~a  705 (910)
T 2hnh_A          626 DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA  705 (910)
T ss_dssp             CSHHHHHHHHHHSSHHHHTTTHHHHHHHHHTTSSCCCSBCSSSBCGGGHHHHGGGTTCCCBHHHHHHHHHHHHCCCHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHH
T ss_conf             87999999998127776334640378876058877677643325688999971457835539999867787669986789


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78897620121101677878999998624999999999999999750001331014788899999999997302666777
Q 537021.9.peg.7  711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA  790 (1033)
Q Consensus       711 d~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa  790 (1033)
                      |.+|||||||+.++|++.++.|++||.++|++++.|++||++|++||+||||||||+|||++|||+||||+|||+|||||
T Consensus       706 d~~Rka~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~fa~Y~FnksHa~aYa~~ay~~AylK~~yP~eF~~a  785 (910)
T 2hnh_A          706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA  785 (910)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99998734467177899999999779984999999999999998874518778999999999999999987078999999


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHH
Q ss_conf             510023542025899988886368503552334210035319-8698502685896989999999998-37999997899
Q 537021.9.peg.7  791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF  868 (1033)
Q Consensus       791 ~L~~~~~~~~~~~~~i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df  868 (1033)
                      +||+++++++++..++.||+++||+|+|||||+|.++|++++ +.||+||++|||||+++++.|+++| ++|||+|+.||
T Consensus       786 ~l~~~~~~~~k~~~~~~e~~~~gi~i~~pdin~S~~~~~~~~~~~i~~gl~~ikgig~~~a~~Iv~~R~~~~~f~s~~Df  865 (910)
T 2hnh_A          786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL  865 (910)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTTCCEECCCTTTCBSSCEECTTSCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred             HHCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEEECHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             81588999389999999999879979898203678845876899598325435998999999999989747998999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9734824799899998886767234790389999989999999
Q 537021.9.peg.7  869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY  911 (1033)
Q Consensus       869 ~~rv~~~~~nk~~le~Li~aGAfD~~~~~R~~ll~~i~~~~~~  911 (1033)
                      +.|++.+.+|++++|.||+|||||+||.||++|++++++++++
T Consensus       866 ~~r~~~~~~~~~~~~~Li~~gafd~~~~~R~~ll~~l~~~~~~  908 (910)
T 2hnh_A          866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA  908 (910)
T ss_dssp             TTSSCSSSSCHHHHHHHHHTTTTTTTSSCHHHHHTTSSSSGGG
T ss_pred             HHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9870646799999999987799746067899999989999984