HHsearch results for GI: peg_753 and protein with PDBid: 3f2b_A
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=100.00 E-value=0 Score=1692.59 Aligned_cols=807 Identities=23% Similarity=0.302 Sum_probs=706.0
Q ss_pred CCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC-
Q ss_conf 8133433144476443299899999999789988998116517749999999997699638999999854766433445-
Q 537021.9.peg.7 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQ- 88 (1033)
Q Consensus 10 ~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~- 88 (1033)
-.|||||||.||+|||+++|++||++|+++||+||||||||||+|+++|+++|+++|||||+|||+|+.++......+.
T Consensus 115 krVeLH~HT~yS~ldg~~~~~elv~~A~e~G~~AiAITDhgnl~G~~ef~~aakk~GIKpIiG~E~~l~dd~~~i~~~~~ 194 (1041)
T 3f2b_A 115 KRVELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVDDGVPIAYNET 194 (1041)
T ss_dssp CCCBCCBCCTTSTTTCCSCHHHHHHHHHHTTCSCEEECCBSCCTTHHHHHHHHHHHTCCEEEEEEEEEECC---------
T ss_pred CEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 70562478843454002789999999998599999883038587899999999986998699889998369753334431
Q ss_pred --CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHHH
Q ss_conf --656666775399995696899999999989973248778740078999863489889981976796788887799789
Q 537021.9.peg.7 89 --GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166 (1033)
Q Consensus 89 --~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~~ 166 (1033)
........+|+++||||++||+|||+|+|.+|++ ++++.|++++++|.+ +++||||+|||..|++.++++.+..++
T Consensus 195 ~~~~~~~~~~~hlilLAKN~~GykNL~kLvS~s~~~-~f~~~PrI~~~~L~~-~~eGLIilSgc~~Gel~~~ll~~~~e~ 272 (1041)
T 3f2b_A 195 HRRLGSGSGPFHVTLLAQNETGLKNLFKLVSLSHIQ-YFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEE 272 (1041)
T ss_dssp ---------CEEEEEEECSHHHHHHHHHHHHHHHTT-TCSSSCCEEHHHHHH-TCTTEEEECCSSSSSSTTC--------
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHH-CCCCEEEECCCCCCHHHHHHHCCCHHH
T ss_conf 123456788753799939999999999999999984-699986577999985-799869973887677999998089999
Q ss_pred HHHHHHH--HHHHCCCCEEEEEEC-CCHH-HH---HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999--987659868999943-9911-58---999999999998189899808830078788999987668846985
Q 537021.9.peg.7 167 AEKRLLT--FKKLFGDRLYVNLQR-HRGY-DR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 (1033)
Q Consensus 167 a~~~l~~--l~~~Fgd~~ylEl~~-~~~~-e~---~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~ 239 (1033)
+++.+.+ |.++|+.++|.+++. +... ++ ..+..++++|+++++|+||||||||++++|+.+|++|.||+.+..
T Consensus 273 ~~~~~~~y~~lei~~~~~y~~li~~~~~~~~~~~~~~~~~li~lAkk~~iplVATnDvhYl~~eD~~~~~iL~~i~~~~~ 352 (1041)
T 3f2b_A 273 VEDIARFYDFLEVHPPDVYKPLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGGAN 352 (1041)
T ss_dssp CCTTGGGCSBEEECCGGGGCCC----CCSCHHHHHHHHHHHHHHHHHTTCCEEECCCBSBSSGGGHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999857862112011015754089999999999999998099989957866788889999999986047998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCHHHH------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 765310024534323434788751220358------99878864111000133221023455575688776898899987
Q 537021.9.peg.7 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 (1033)
Q Consensus 240 l~~~~~~~~~~~~yLks~eEM~~~f~~~pe------Ai~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~ 313 (1033)
..... ..+++||+|++||.++|+++|+ +++||..||++|+. ..|.+|++.+|.+ .+++++|++
T Consensus 353 ~~~~~---~~~e~ylks~eEM~~~F~~l~~e~~~e~~i~Nt~~Ia~~~~~----~~p~~~~~~~P~~----~~~~e~L~~ 421 (1041)
T 3f2b_A 353 PLNRH---ELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIGD----VKPIKDELYTPRI----EGADEEIRE 421 (1041)
T ss_dssp SSTTS---CCCCCBCCCHHHHHHHHGGGHHHHHHHHHTHHHHHHHHTCCC----CCSSCSSCBCCCC----TTHHHHHHH
T ss_pred HHHHH---HHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCC----CCHHHHHHH
T ss_conf 36653---323430478999999864332778888999989999988501----3556864457655----567899999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 65410342012464324578389999988778989860630557888999998510476433444420466776554403
Q 537021.9.peg.7 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 (1033)
Q Consensus 314 l~~~Gl~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT 393 (1033)
+|++|+++||++. .++.|++||++||++|.+|||++|||||||+|+|||++||+|| |||||||||||||||||
T Consensus 422 l~~~~~~~~yg~~------l~~~~~~RL~~EL~vI~~~Gf~~YFLIv~dlV~~a~~~gi~vg-gRGSaagSlVay~LgIT 494 (1041)
T 3f2b_A 422 MSYRRAKEIYGDP------LPKLVEERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEIT 494 (1041)
T ss_dssp HHHHHHHHHHCSS------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCE-ECGGGGGCHHHHHTTSC
T ss_pred HHHHHHHHHCCCC------CCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHCCCC
T ss_conf 9987777622657------7288999999999999850568775999999999986798625-66314567999861765
Q ss_pred CCCHHH-----------------------------------------CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 756333-----------------------------------------231056762100145787533365687899999
Q 537021.9.peg.7 394 DIDPLR-----------------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 (1033)
Q Consensus 394 ~VDPi~-----------------------------------------~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~ 432 (1033)
+||||+ |||+|||||||+|.+|||||+||++++|++|++
T Consensus 495 eVDPl~~hy~c~~c~~~ef~~~~~~~~g~dlpd~~cp~c~~~~~~dg~~L~FErFLn~~r~~~PDIDlDF~~~~r~~v~~ 574 (1041)
T 3f2b_A 495 EVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHN 574 (1041)
T ss_dssp SCCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEEECCCCCTHHHHTTTSCSCCCEEEEEETTTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHCCCCCCCCCHHHCCCCHHHHHHHHH
T ss_conf 64898632246521112114555445677776544521101331457444142215833023453211253788999999
Q ss_pred HHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCHHHH
Q ss_conf 99830380215542207787788999999975279988988654310145898244344522988788643074202688
Q 537021.9.peg.7 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512 (1033)
Q Consensus 433 y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1033)
|++++||+++||+|+||+|+++|+|++++.+. +...+.. ....++.
T Consensus 575 yv~~~yG~~~va~i~T~~t~~~k~A~~~vk~~---------------~~~~~~~-------------------~r~aei~ 620 (1041)
T 3f2b_A 575 YTKVLFGEDNVYRAGTIGTVADKTAYGFVKAY---------------ASDHNLE-------------------LRGAEID 620 (1041)
T ss_dssp HHHHHHCTTSEEEEEEEEECCHHHHHHHHHHH---------------HHHTTCC-------------------CCHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHHHHHHHHC---------------CCCCCHH-------------------HHHHHHH
T ss_conf 88876360037898631105766564131001---------------0124324-------------------6799999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCC--CHHHHEECCCCC---CCCCEEEEEECHHHHHHCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 9872011221002447440335256--666620012367---68866885102133431123213565417899999999
Q 537021.9.peg.7 513 EISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 (1033)
Q Consensus 513 ~~a~~leg~~r~~~~Ha~Gvvi~~~--~l~~~~p~~~~~---~~~~~~~q~d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~ 587 (1033)
++|++|||+|||+|+|||||||+++ ||+++||++.++ .+++++|||||+++|+ ||||||||||+|||+|+.+.+
T Consensus 621 ~la~~leG~~R~~g~HagGvVI~p~~~~l~d~~Pl~~~~~~~~~~~~~tqfd~~~ie~-gLlK~D~LGl~~lt~I~~~~~ 699 (1041)
T 3f2b_A 621 RLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQD 699 (1041)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEECCTTSCGGGTCCEECGGGCTTCSSCEEEEEHHHHTT-TBCEEEEEEEHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHC-CCEEEEECCCCCHHHHHHHHH
T ss_conf 9861357751144427771798057531221256034477776564244201222222-866686537885799999987
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHCCC--------------CCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCH
Q ss_conf 88740254343323443588998762014--------------1012211453478888771740488887665411411
Q 537021.9.peg.7 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 (1033)
Q Consensus 588 ~i~~~~~~~d~~~ip~~D~~~~~l~~~g~--------------t~GvFQ~es~~~~~~l~~~~p~~~~dl~~~~al~RPG 653 (1033)
++ .+|+.+||+||++||++|++++ |.|||||||++||++|++++|++|+|||+++||+|||
T Consensus 700 l~-----~id~~~Ip~dD~~t~~lf~~~~~~~~~~~~~~~~~~T~GifQ~eS~~~r~~L~~~kP~~f~DLv~i~aL~rp~ 774 (1041)
T 3f2b_A 700 LS-----GIDPKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGT 774 (1041)
T ss_dssp HH-----CCCGGGCCSCCHHHHHTTTCSGGGTSCHHHHTCSSSCTTSTTTTSHHHHHHHHHHCCCSHHHHHHHHHHTSST
T ss_pred HH-----CCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 60-----2787657765677888764024112216888742375556741116799999970898667678787510364
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 34200368885046578502696673341033553001256898878863268413078897620121101677878999
Q 537021.9.peg.7 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 (1033)
Q Consensus 654 p~~~~~~yi~rk~g~e~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ead~lRra~~kk~~~~~~~~~~~f~ 733 (1033)
|+.. +|+++.+.+.||.|+++|+.|||||||| | ++|++.++|+.+|+++.|++. ++++|.
T Consensus 775 ~v~~-------~n~~e~i~~~~~~l~~vl~~t~gimvy~--i------~~g~~~~~a~~i~e~~rk~k~-----~~~~~~ 834 (1041)
T 3f2b_A 775 DVWL-------GNAQELIQNGTCTLSEVIGCRDDIMVYL--I------YRGLEPSLAFKIMESVRKGKG-----LTPEFE 834 (1041)
T ss_dssp TSTT-------TTHHHHHHTTSSCGGGSCCSHHHHHHHH--H------HTTCCHHHHHHHHHHHTTTCC-----CCHHHH
T ss_pred CHHH-------CCCCHHCCCCCCCHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHHCC-----CCHHHH
T ss_conf 1121-------1440110368757998850274799999--9------997779999999999997479-----989999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH---------HHHH
Q ss_conf 9986249999999999999997500013310147888999999999973026667775100235420---------2589
Q 537021.9.peg.7 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKK 804 (1033)
Q Consensus 734 ~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~~~---------~~~~ 804 (1033)
+++.++|++++. ..+.+|++||||||||+|||++|||+||||+|||+|||||+||+++++++ ++..
T Consensus 835 ~~~~~~~v~~~~-----~~~~~~~~YgFnKSHAaAYa~iayq~AylK~hYP~eF~aa~ls~~~~~~d~~~~~~~~~~i~~ 909 (1041)
T 3f2b_A 835 AEMRKHDVPEWY-----IDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRK 909 (1041)
T ss_dssp HHHHHTTCCHHH-----HHHHHHCSCCCCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTCCCCCHHHHHHCHHHHHH
T ss_pred HHHHHCCCHHHH-----HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHCCHHHHHH
T ss_conf 988877868999-----999861527987899999999999999998605399999972568567755766321788999
Q ss_pred HHHHHHH------------------------CCCCCCCCCCCCCCE-EEEECCCEEEEEHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9988886------------------------368503552334210-035319869850268589698999999999837
Q 537021.9.peg.7 805 FCQDARQ------------------------FNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859 (1033)
Q Consensus 805 ~i~e~~~------------------------~gi~vl~PdIN~S~~-~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~ 859 (1033)
++.||++ +|++++|||||+|.+ .|.+++++||+||++|||||++++++|+++|++
T Consensus 910 ~i~e~~~~g~~~~~~~~~~~~~l~~~~e~~~rg~~~~~~di~~S~a~~f~i~~~~I~~gl~aIkGlG~~~a~~Iv~~R~~ 989 (1041)
T 3f2b_A 910 RIEEINAKGIQATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREE 989 (1041)
T ss_dssp HHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHTTCEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEECCCCEEEECHHHCCCCCHHHHHHHHHHHCC
T ss_conf 99999973985465322333223220678756884178863335662121059949951564389799999999998667
Q ss_pred CCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 999997899973482479989999888676723479038999998
Q 537021.9.peg.7 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 (1033)
Q Consensus 860 g~f~sl~df~~rv~~~~~nk~~le~Li~aGAfD~~~~~R~~ll~~ 904 (1033)
|||+|++||+.|+ .+||+++|.||++||||+|+.+|+..|++
T Consensus 990 g~F~s~~Df~~R~---~~~k~~le~Li~~Gafd~l~~~~q~~Lf~ 1031 (1041)
T 3f2b_A 990 GEFLSKEDLQQRG---KLSKTLLEYLESRGCLDSLPDHNQLSLFS 1031 (1041)
T ss_dssp SCCCSHHHHHHHH---TCCHHHHHHHHHTTTTTTSCSSCSCCCC-
T ss_pred CCCCCHHHHHHHH---CCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9999999999732---89999999999779977898328999982