Query 537021.9.peg.753_1
Match_columns 1033
No_of_seqs 206 out of 3477
Neff 6.8
Searched_HMMs 23785
Date Wed May 25 07:46:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_753.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hpi_A DNA polymerase III alph 100.0 0 0 2408.0 86.9 1014 5-1033 1-1083(1220)
2 2hnh_A DNA polymerase III alph 100.0 0 0 2098.6 73.8 887 8-911 3-908 (910)
3 3f2b_A DNA-directed DNA polyme 100.0 0 0 1692.6 49.6 807 10-904 115-1031(1041)
4 3e38_A Two-domain protein cont 99.8 5.6E-27 2.3E-31 244.8 -31.7 295 11-358 20-337 (343)
5 3o0f_A Putative metal-dependen 99.7 6.1E-19 2.6E-23 176.8 3.6 73 8-82 9-83 (301)
6 1m65_A Hypothetical protein YC 99.4 1.3E-14 5.5E-19 140.2 1.0 181 10-222 2-198 (245)
7 3dcp_A Histidinol-phosphatase; 99.4 1.9E-13 8.1E-18 130.3 6.3 207 13-221 4-263 (283)
8 2yxo_A Histidinol phosphatase; 99.4 1.1E-13 4.8E-18 132.3 2.1 200 12-222 2-230 (267)
9 2wje_A CPS4B, tyrosine-protein 99.1 3.5E-11 1.5E-15 111.2 5.5 221 10-277 4-247 (247)
10 2anu_A Hypothetical protein TM 98.8 2.7E-08 1.1E-12 86.9 9.3 166 5-221 13-210 (255)
11 2w9m_A Polymerase X; SAXS, DNA 98.7 1.9E-07 8.1E-12 79.6 11.3 20 803-825 473-492 (578)
12 2edu_A Kinesin-like protein KI 96.5 0.0016 6.6E-08 46.5 3.2 51 838-891 41-92 (98)
13 2i5h_A Hypothetical protein AF 95.6 0.0078 3.3E-07 40.6 3.4 36 838-873 133-168 (205)
14 2k50_A Replication factor A re 95.1 0.043 1.8E-06 34.4 6.0 50 983-1032 7-61 (115)
15 1s5l_U Photosystem II 12 kDa e 93.6 0.064 2.7E-06 32.9 4.1 53 819-887 55-107 (134)
16 3i7f_A Aspartyl-tRNA synthetas 93.4 0.16 6.9E-06 29.4 6.0 13 537-549 311-323 (548)
17 3e0e_A Replication protein A; 93.4 0.24 1E-05 28.1 6.8 47 986-1032 5-56 (97)
18 3bz1_U Photosystem II 12 kDa e 93.3 0.066 2.8E-06 32.8 3.8 54 818-887 24-77 (104)
19 3dm3_A Replication factor A; p 93.3 0.17 7.3E-06 29.3 5.9 48 985-1032 7-59 (105)
20 3m4p_A Ehasnrs, asparaginyl-tR 92.9 0.32 1.3E-05 27.0 6.7 14 249-262 201-214 (456)
21 1e1o_A Lysyl-tRNA synthetase; 92.8 0.35 1.5E-05 26.7 6.8 29 537-565 252-281 (504)
22 3a74_A Lysyl-tRNA synthetase; 91.5 0.54 2.3E-05 25.1 6.5 12 537-548 243-254 (493)
23 2duy_A Competence protein come 91.2 0.1 4.2E-06 31.3 2.5 55 816-886 16-70 (75)
24 3bju_A Lysyl-tRNA synthetase; 91.0 0.77 3.2E-05 23.8 7.6 12 537-548 245-256 (521)
25 3kf6_A Protein STN1; OB fold, 90.9 0.63 2.7E-05 24.5 6.4 36 992-1032 47-83 (159)
26 3ebe_A Protein MCM10 homolog; 89.0 1.1 4.4E-05 22.6 6.4 41 992-1032 56-99 (200)
27 2zxd_A Alpha-L-fucosidase, put 87.6 1.2 5.1E-05 22.1 5.9 44 27-70 105-169 (455)
28 1o7i_A SSB, SSO2364, single st 87.1 1.3 5.6E-05 21.7 7.0 48 986-1033 5-57 (119)
29 1gm5_A RECG; helicase, replica 86.9 0.37 1.5E-05 26.5 2.9 30 787-817 614-643 (780)
30 3kf8_A Protein STN1; OB fold; 86.2 1.5 6.2E-05 21.4 6.2 43 989-1031 82-130 (220)
31 3gza_A Putative alpha-L-fucosi 84.3 1.8 7.5E-05 20.7 5.6 50 25-78 57-130 (443)
32 3bzc_A TEX; helix-turn-helix, 84.1 0.73 3.1E-05 24.0 3.3 73 800-885 481-554 (785)
33 2pi2_A Replication protein A 3 82.5 2.1 8.7E-05 20.2 6.1 32 527-558 74-107 (270)
34 3kdf_D Replication protein A 3 82.3 2.1 8.7E-05 20.1 6.3 37 992-1033 31-68 (132)
35 2k75_A Uncharacterized protein 82.2 2.1 8.8E-05 20.1 6.5 41 992-1032 13-56 (106)
36 3eyp_A Putative alpha-L-fucosi 80.2 2.4 0.0001 19.6 5.9 50 26-79 53-126 (469)
37 3dx5_A Uncharacterized protein 80.0 2.3 9.5E-05 19.8 4.6 52 18-69 6-64 (286)
38 2wvv_A Alpha-L-fucosidase; alp 78.9 2.6 0.00011 19.3 5.7 45 26-70 77-142 (450)
39 3mo4_A Alpha-1,3/4-fucosidase; 76.1 3.1 0.00013 18.7 6.3 45 27-71 64-132 (480)
40 1qzg_A Protection of telomeres 75.5 3.2 0.00013 18.6 6.9 43 990-1032 40-90 (187)
41 1hjs_A Beta-1,4-galactanase; 4 73.5 3.5 0.00015 18.2 4.7 65 10-74 10-81 (332)
42 2pgf_A Adenosine deaminase; me 72.2 1.5 6.4E-05 21.3 2.0 20 353-372 110-129 (371)
43 3l6a_A Eukaryotic translation 71.6 3 0.00013 18.8 3.4 119 305-449 5-125 (364)
44 2zkq_k 40S ribosomal protein S 71.4 1.8 7.4E-05 20.7 2.2 27 375-401 109-138 (151)
45 1ynx_A Replication factor-A pr 68.6 4.4 0.00018 17.4 5.3 52 980-1033 4-59 (114)
46 1wjj_A Hypothetical protein F2 68.3 4.4 0.00019 17.3 5.0 47 986-1032 19-80 (145)
47 1ug3_A EIF4GI, eukaryotic prot 67.9 4.3 0.00018 17.4 3.5 120 308-453 7-127 (339)
48 2kbn_A Conserved protein; nucl 66.4 4.8 0.0002 17.1 6.4 44 987-1032 9-53 (109)
49 1s1h_K RP59A, 40S ribosomal pr 66.3 2.1 8.8E-05 20.1 1.7 27 375-401 94-123 (136)
50 2ztd_A Holliday junction ATP-d 65.9 4.9 0.00021 17.0 6.1 62 839-908 125-188 (212)
51 1qwg_A PSL synthase;, (2R)-pho 65.2 5 0.00021 16.9 5.8 12 430-441 211-222 (251)
52 1k19_A Chemosensory protein CS 63.0 5.5 0.00023 16.6 3.6 40 776-816 70-109 (112)
53 2ekc_A AQ_1548, tryptophan syn 62.6 5.6 0.00023 16.5 9.9 41 27-68 2-46 (262)
54 3nav_A Tryptophan synthase alp 61.8 5.7 0.00024 16.4 4.6 46 24-70 2-51 (271)
55 2zkq_m 40S ribosomal protein S 59.9 4.1 0.00017 17.7 2.2 57 814-887 13-69 (152)
56 3ofo_B 30S ribosomal protein S 59.2 5.7 0.00024 16.4 2.8 67 401-469 16-83 (218)
57 3iar_A Adenosine deaminase; pu 59.0 3.5 0.00015 18.2 1.7 26 12-42 9-34 (367)
58 1e8g_A Vanillyl-alcohol oxidas 58.9 3.1 0.00013 18.6 1.5 21 360-380 83-104 (560)
59 1vjz_A Endoglucanase; TM1752, 58.8 6.3 0.00027 16.0 4.9 69 6-74 15-98 (341)
60 3bbn_B Ribosomal protein S2; s 58.6 5.9 0.00025 16.3 2.8 19 98-116 39-57 (231)
61 2vqe_K 30S ribosomal protein S 57.7 4.1 0.00017 17.6 1.9 27 375-401 88-117 (129)
62 3glk_A Acetyl-COA carboxylase 57.5 6.6 0.00028 15.9 4.3 99 13-121 6-121 (540)
63 1bif_A 6-phosphofructo-2-kinas 57.4 6.2 0.00026 16.1 2.8 31 374-407 227-257 (469)
64 3ou8_A Adenosine deaminase; st 57.2 2.8 0.00012 19.0 1.0 26 12-42 13-38 (326)
65 3f1z_A Putative nucleic acid-b 56.7 6.8 0.00029 15.8 5.9 39 988-1026 45-83 (133)
66 3ci0_K Pseudopilin GSPK; gener 56.4 5.3 0.00022 16.7 2.3 39 839-877 201-241 (298)
67 1rh9_A Endo-beta-mannanase; en 55.6 7.1 0.0003 15.6 5.8 22 197-218 87-108 (373)
68 1xrs_B D-lysine 5,6-aminomutas 55.3 7.1 0.0003 15.6 6.6 20 198-217 170-189 (262)
69 2q02_A Putative cytoplasmic pr 53.3 7.6 0.00032 15.4 5.4 49 26-75 18-72 (272)
70 3jrx_A Acetyl-COA carboxylase 53.1 7.7 0.00032 15.3 3.6 86 25-121 39-137 (587)
71 3bbn_K Ribosomal protein S11; 52.6 1.6 6.9E-05 21.0 -0.8 27 375-401 101-130 (140)
72 1tg7_A Beta-galactosidase; TIM 52.0 7.9 0.00033 15.2 4.3 50 29-78 38-100 (971)
73 2zu6_B Programmed cell death p 51.9 8 0.00034 15.2 4.1 79 342-427 183-262 (307)
74 1fob_A Beta-1,4-galactanase; B 51.0 8.2 0.00034 15.1 3.6 45 28-72 28-79 (334)
75 1jmc_A Protein (replication pr 50.4 8.4 0.00035 15.0 6.2 54 979-1032 125-185 (246)
76 1z00_A DNA excision repair pro 49.9 7.8 0.00033 15.3 2.3 51 835-902 17-67 (89)
77 2f6h_X Myosin-2, type V myosin 49.0 8.7 0.00037 14.9 3.0 86 677-762 146-245 (419)
78 3mmt_A Fructose-bisphosphate a 48.7 8.8 0.00037 14.8 4.5 25 517-541 55-79 (347)
79 1cuk_A RUVA protein; DNA repai 47.9 9.1 0.00038 14.7 4.3 16 839-854 110-125 (203)
80 3n4f_A Mandelate racemase/muco 47.4 9.2 0.00039 14.7 3.8 76 360-441 294-384 (392)
81 3d3a_A Beta-galactosidase; pro 46.6 9.4 0.0004 14.6 5.4 50 29-78 39-101 (612)
82 3kws_A Putative sugar isomeras 46.0 9.6 0.0004 14.5 4.7 45 26-70 37-81 (287)
83 1uuq_A Mannosyl-oligosaccharid 45.8 9.7 0.00041 14.5 5.7 24 196-219 112-135 (440)
84 3mqt_A Mandelate racemase/muco 45.6 9.7 0.00041 14.5 3.9 86 353-441 285-390 (394)
85 3no1_A Isomerase, mandelate ra 45.2 9.9 0.00041 14.4 2.3 31 360-390 303-333 (398)
86 1jb7_A Telomere-binding protei 44.9 10 0.00042 14.4 6.6 12 95-106 96-107 (495)
87 1x2i_A HEF helicase/nuclease; 44.5 8.5 0.00036 14.9 1.8 30 836-870 13-42 (75)
88 1qop_A Tryptophan synthase alp 44.5 10 0.00042 14.3 4.3 44 26-70 1-48 (268)
89 2a1j_B DNA excision repair pro 44.3 7.9 0.00033 15.2 1.6 30 835-869 30-59 (91)
90 2vpq_A Acetyl-COA carboxylase; 43.9 10 0.00043 14.3 4.3 27 43-71 3-29 (451)
91 2dh2_A 4F2 cell-surface antige 43.6 10 0.00044 14.2 5.8 49 23-71 29-100 (424)
92 3obe_A Sugar phosphate isomera 43.1 11 0.00044 14.2 4.2 58 12-70 21-93 (305)
93 2vqe_M 30S ribosomal protein S 43.1 3.9 0.00017 17.8 -0.1 48 831-887 11-58 (126)
94 3kwm_A Ribose-5-phosphate isom 43.0 8.4 0.00035 15.0 1.6 50 806-856 63-114 (224)
95 3ofo_K 30S ribosomal protein S 43.0 8.8 0.00037 14.8 1.7 27 375-401 78-107 (117)
96 3ipw_A Hydrolase TATD family p 42.3 11 0.00045 14.1 4.0 62 4-66 21-90 (325)
97 1dly_A Hemoglobin; oxygen stor 42.0 11 0.00046 14.0 6.2 70 694-763 88-161 (164)
98 2w70_A Biotin carboxylase; lig 41.4 11 0.00047 14.0 4.0 68 42-121 3-72 (449)
99 3n6r_A Propionyl-COA carboxyla 40.9 11 0.00047 13.9 2.8 15 199-213 16-30 (681)
100 1yz4_A DUSP15, dual specificit 40.7 11 0.00048 13.9 5.3 44 353-396 66-113 (160)
101 1bf2_A Isoamylase; hydrolase, 40.2 12 0.00048 13.8 3.5 14 361-374 276-289 (750)
102 3p52_A NH(3)-dependent NAD(+) 40.0 12 0.00049 13.8 5.9 58 141-212 26-84 (249)
103 3cuq_A Vacuolar-sorting protei 39.6 9.9 0.00042 14.4 1.5 41 849-889 155-196 (234)
104 2bcq_A DNA polymerase lambda; 39.4 12 0.0005 13.8 3.2 13 387-399 112-124 (335)
105 1o8b_A Ribose 5-phosphate isom 39.1 12 0.0005 13.7 2.3 51 806-857 57-109 (219)
106 2qf7_A Pyruvate carboxylase pr 39.1 12 0.0005 13.7 2.8 44 24-68 77-120 (1165)
107 1i60_A IOLI protein; beta barr 39.1 12 0.0005 13.7 13.4 49 26-75 13-67 (278)
108 1b22_A DNA repair protein RAD5 38.7 12 0.00051 13.7 2.0 10 844-853 32-41 (114)
109 3icg_A Endoglucanase D; cellul 38.6 12 0.00051 13.7 4.8 44 29-72 47-105 (515)
110 1kft_A UVRC, excinuclease ABC 38.5 8.2 0.00034 15.1 0.9 27 838-869 25-51 (78)
111 2bvf_A 6-hydroxy-D-nicotine ox 38.3 12 0.00051 13.6 2.0 20 360-380 51-70 (459)
112 1lk5_A D-ribose-5-phosphate is 37.8 12 0.00052 13.6 2.6 51 805-856 60-112 (229)
113 2f8m_A Ribose 5-phosphate isom 37.8 12 0.00052 13.6 2.4 53 804-857 66-120 (244)
114 2g0w_A LMO2234 protein; putati 37.6 13 0.00053 13.5 5.4 54 19-75 29-89 (296)
115 1c6v_A Protein (SIV integrase) 37.3 13 0.00053 13.5 2.0 28 196-223 48-76 (164)
116 3kp1_A D-ornithine aminomutase 37.1 13 0.00053 13.5 6.6 24 97-120 76-99 (763)
117 2a1j_A DNA repair endonuclease 36.9 13 0.00054 13.5 2.4 36 839-885 6-41 (63)
118 2zvr_A Uncharacterized protein 36.7 13 0.00054 13.4 3.4 15 200-214 73-87 (290)
119 1exn_A 5'-exonuclease, 5'-nucl 36.7 13 0.00054 13.4 2.8 27 842-873 208-234 (290)
120 2zds_A Putative DNA-binding pr 36.2 13 0.00055 13.4 4.9 53 19-71 7-69 (340)
121 3ngf_A AP endonuclease, family 36.1 13 0.00055 13.4 4.8 50 20-70 16-65 (269)
122 2uyg_A 3-dehydroquinate dehydr 35.9 8 0.00034 15.2 0.6 18 195-212 28-45 (149)
123 3i9v_2 NADH-quinone oxidoreduc 35.9 13 0.00055 13.3 4.1 61 421-482 2-70 (181)
124 1c0m_A Protein (integrase); HI 35.9 13 0.00055 13.3 4.0 15 199-213 82-96 (238)
125 2jg6_A DNA-3-methyladenine gly 35.6 13 0.00056 13.3 4.2 131 670-825 5-165 (186)
126 1wza_A Alpha-amylase A; hydrol 35.1 14 0.00057 13.2 4.6 43 5-47 1-55 (488)
127 1ulz_A Pyruvate carboxylase N- 35.0 14 0.00057 13.2 3.4 68 42-121 3-71 (451)
128 1tvk_A Tubulin alpha chain; ep 34.9 9.3 0.00039 14.6 0.8 46 334-393 115-160 (440)
129 2h9d_A Salicylate biosynthesis 34.8 14 0.00058 13.2 6.0 56 694-756 30-85 (101)
130 1qya_A ORFB, hypothetical prot 34.3 8.5 0.00036 14.9 0.5 29 366-394 223-251 (307)
131 3hbl_A Pyruvate carboxylase; T 34.2 14 0.00059 13.1 4.1 46 23-69 60-105 (1150)
132 2g8y_A Malate/L-lactate dehydr 34.2 14 0.00058 13.2 1.6 34 197-230 120-153 (385)
133 3edn_A Phenazine biosynthesis 34.0 12 0.00051 13.7 1.2 30 367-396 218-247 (299)
134 1v8d_A Hypothetical protein (T 34.0 11 0.00045 14.1 0.9 73 141-217 61-139 (235)
135 1ixr_A Holliday junction DNA h 33.6 14 0.0006 13.1 2.4 19 839-857 109-128 (191)
136 2x6h_A GH13170P, VPS34, phosph 33.6 13 0.00053 13.5 1.3 45 569-624 450-494 (696)
137 3bch_A 40S ribosomal protein S 33.5 14 0.0006 13.0 3.3 13 805-817 166-178 (253)
138 2ihm_A POL MU, DNA polymerase 33.2 14 0.00061 13.0 4.2 16 382-399 115-130 (360)
139 2vcc_A Alpha-N-acetylglucosami 33.1 14 0.00061 13.0 2.8 102 425-545 288-399 (891)
140 2ww4_A 4-diphosphocytidyl-2C-m 32.8 15 0.00061 13.0 1.7 11 428-438 255-265 (283)
141 1ecm_A Endo-oxabicyclic transi 32.6 15 0.00062 12.9 8.3 67 694-782 27-95 (109)
142 3nqb_A Adenine deaminase 2; PS 32.0 15 0.00063 12.9 1.5 32 9-44 89-120 (608)
143 2dpl_A GMP synthetase, GMP syn 31.9 15 0.00063 12.9 3.5 22 454-475 165-186 (308)
144 1ym5_A YHI9, hypothetical 32.6 31.8 11 0.00045 14.1 0.7 32 366-397 215-246 (300)
145 1f0x_A DLDH, D-lactate dehydro 31.6 13 0.00055 13.4 1.1 20 360-380 58-77 (571)
146 3l23_A Sugar phosphate isomera 31.5 15 0.00064 12.8 6.0 53 18-70 18-76 (303)
147 2vrq_A Alpha-L-arabinofuranosi 31.4 15 0.00064 12.8 4.8 45 30-74 54-129 (496)
148 1uqr_A 3-dehydroquinate dehydr 31.4 11 0.00045 14.1 0.6 18 195-212 30-47 (154)
149 1qus_A Lytic murein transglyco 31.4 15 0.00065 12.8 5.1 48 727-774 97-144 (322)
150 1chm_A Creatine amidinohydrola 31.3 15 0.00063 12.9 1.3 44 9-52 3-50 (401)
151 2fmp_A DNA polymerase beta; nu 31.2 15 0.00065 12.8 4.2 13 388-400 115-127 (335)
152 1xub_A Phenazine biosynthesis 30.6 16 0.00066 12.7 1.6 31 366-396 219-249 (298)
153 1v9n_A Malate dehydrogenase; r 30.4 13 0.00056 13.3 1.0 21 200-220 108-128 (360)
154 3ls8_A Phosphatidylinositol 3- 30.4 15 0.00065 12.8 1.3 44 570-624 377-420 (614)
155 3dr0_A Cytochrome C6; photosyn 30.4 16 0.00067 12.7 4.1 36 406-441 56-91 (93)
156 1bqc_A Protein (beta-mannanase 30.1 16 0.00067 12.6 6.1 43 31-73 36-85 (302)
157 2uuu_A Alkyldihydroxyacetoneph 30.0 13 0.00054 13.5 0.8 20 360-380 150-169 (584)
158 1qnr_A Endo-1,4-B-D-mannanase; 30.0 16 0.00068 12.6 5.3 21 196-216 91-111 (344)
159 3lwz_A 3-dehydroquinate dehydr 29.9 10 0.00043 14.3 0.3 16 196-211 37-52 (153)
160 2gjv_A Putative cytoplasmic pr 29.8 8.1 0.00034 15.1 -0.2 36 577-613 26-61 (175)
161 1nxu_A Hypothetical oxidoreduc 29.7 15 0.00065 12.8 1.2 25 198-222 95-119 (333)
162 3k6g_A Telomeric repeat-bindin 29.7 5.6 0.00023 16.5 -1.1 29 270-298 35-64 (111)
163 1xng_A NH(3)-dependent NAD(+) 29.5 16 0.00069 12.6 6.5 59 140-212 24-83 (268)
164 3cm3_A Late protein H1, dual s 29.2 17 0.00069 12.5 3.3 41 352-392 89-133 (176)
165 2c0h_A Mannan endo-1,4-beta-ma 29.2 17 0.0007 12.5 6.8 44 29-72 47-110 (353)
166 1o57_A PUR operon repressor; p 29.1 17 0.0007 12.5 4.0 70 402-473 86-160 (291)
167 1jae_A Alpha-amylase; glycosid 28.6 14 0.00058 13.2 0.8 17 55-71 77-93 (471)
168 2e9l_A Cytosolic beta-glucosid 28.6 17 0.00071 12.4 3.8 50 23-72 53-117 (469)
169 1v77_A PH1877P, hypothetical p 28.3 17 0.00072 12.4 3.6 41 180-220 123-172 (212)
170 2h56_A DNA-3-methyladenine gly 28.2 17 0.00072 12.4 6.4 98 736-855 59-156 (233)
171 3mmw_A Endoglucanase; TIM barr 28.1 17 0.00072 12.4 4.8 45 28-72 34-93 (317)
172 1uek_A 4-(cytidine 5'-diphosph 28.0 15 0.00064 12.8 0.9 23 361-385 214-236 (275)
173 3bbn_M Ribosomal protein S13; 27.9 2.7 0.00011 19.2 -2.9 40 808-855 41-80 (145)
174 3jug_A Beta-mannanase; TIM-bar 27.9 17 0.00073 12.3 6.0 17 197-213 89-105 (345)
175 1z2i_A Malate dehydrogenase; s 27.7 17 0.00073 12.3 2.1 18 200-217 106-123 (358)
176 2jep_A Xyloglucanase; family 5 27.6 17 0.00074 12.3 5.3 19 196-214 111-129 (395)
177 2vqe_B 30S ribosomal protein S 27.6 18 0.00074 12.3 2.0 21 98-118 40-60 (256)
178 3kts_A Glycerol uptake operon 27.5 18 0.00074 12.3 8.9 157 28-238 17-173 (192)
179 2ziu_A MUS81 protein; helix-ha 27.2 18 0.00075 12.3 2.5 29 839-872 239-267 (311)
180 3ce9_A Glycerol dehydrogenase; 27.0 18 0.00075 12.2 1.2 48 21-69 14-64 (354)
181 2whl_A Beta-mannanase, baman5; 26.6 18 0.00076 12.2 6.0 46 27-72 31-83 (294)
182 1xtz_A Ribose-5-phosphate isom 26.4 18 0.00077 12.2 2.3 49 806-855 83-133 (264)
183 1e4i_A Beta-glucosidase; glyco 26.4 18 0.00077 12.1 2.5 17 198-214 101-117 (447)
184 1d8j_A General transcription f 26.3 13 0.00053 13.5 0.2 36 648-686 6-42 (81)
185 3ofp_M 30S ribosomal protein S 26.3 3.8 0.00016 18.0 -2.5 26 830-855 9-34 (113)
186 1s7j_A Phenazine biosynthesis 26.1 17 0.00073 12.3 0.9 24 368-391 193-216 (262)
187 1now_A Beta-hexosaminidase bet 26.1 18 0.00078 12.1 1.7 24 360-383 222-250 (507)
188 1qam_A ERMC' methyltransferase 26.0 15 0.00063 12.9 0.6 41 372-412 35-77 (244)
189 1rd5_A Tryptophan synthase alp 25.9 19 0.00078 12.1 3.5 39 28-68 4-47 (262)
190 1ls9_A Cytochrome C6; omega lo 25.8 19 0.00078 12.1 3.2 34 408-441 56-89 (91)
191 2p5v_A Transcriptional regulat 25.8 19 0.00079 12.1 3.0 47 414-479 2-49 (162)
192 1rfm_A L-sulfolactate dehydrog 25.6 19 0.00079 12.0 1.7 21 200-220 97-117 (344)
193 3eef_A N-carbamoylsarcosine am 25.6 19 0.00079 12.0 3.4 27 198-224 32-58 (182)
194 1vi6_A 30S ribosomal protein S 25.5 19 0.00079 12.0 3.3 15 27-41 11-25 (208)
195 3geb_A EYES absent homolog 2; 25.5 15 0.00064 12.8 0.5 107 336-472 144-256 (274)
196 2gtv_X CM, chorismate mutase; 25.3 19 0.0008 12.0 8.0 49 722-784 55-103 (104)
197 1hx0_A Alpha amylase (PPA); in 25.0 16 0.00066 12.7 0.5 17 197-213 79-95 (496)
198 2bgw_A XPF endonuclease; hydro 24.8 19 0.00081 11.9 1.9 27 838-869 163-189 (219)
199 3idw_A Actin cytoskeleton-regu 24.7 19 0.00082 11.9 2.6 16 428-443 55-70 (72)
200 2af7_A Gamma-carboxymuconolact 24.6 20 0.00082 11.9 3.6 33 731-765 75-107 (125)
201 1nnx_A Protein YGIW; structura 24.5 20 0.00082 11.9 6.3 46 978-1031 23-68 (109)
202 1jeo_A MJ1247, hypothetical pr 24.5 20 0.00082 11.9 2.9 34 180-215 83-116 (180)
203 1wbh_A KHG/KDPG aldolase; lyas 24.3 20 0.00083 11.9 2.9 38 124-161 90-128 (214)
204 1z00_B DNA repair endonuclease 24.2 20 0.00083 11.8 2.6 26 839-869 20-45 (84)
205 2osx_A Endoglycoceramidase II; 24.2 20 0.00083 11.8 5.4 20 355-374 102-121 (481)
206 3kip_A 3-dehydroquinase, type 24.2 13 0.00056 13.3 0.0 29 205-234 80-108 (167)
207 2bkm_A Truncated hemoglobin fr 24.0 20 0.00084 11.8 4.3 43 724-766 84-126 (128)
208 2qde_A Mandelate racemase/muco 23.9 20 0.00084 11.8 5.1 18 360-377 280-297 (397)
209 1jms_A Terminal deoxynucleotid 23.8 20 0.00085 11.8 4.1 28 366-400 123-150 (381)
210 1g94_A Alpha-amylase; beta-alp 23.7 19 0.00078 12.1 0.7 46 30-75 18-87 (448)
211 1kko_A 3-methylaspartate ammon 23.7 20 0.00085 11.8 4.2 23 573-595 332-354 (413)
212 3e2v_A 3'-5'-exonuclease; stru 23.6 20 0.00085 11.8 4.8 65 4-69 7-80 (401)
213 1i7w_B E-cadherin, epithelial- 23.5 13 0.00053 13.5 -0.2 13 376-388 105-117 (151)
214 1wr1_B Ubiquitin-like protein 23.5 20 0.00086 11.7 1.7 22 337-358 13-34 (58)
215 1o5k_A DHDPS, dihydrodipicolin 23.3 21 0.00087 11.7 9.7 88 141-237 47-136 (306)
216 2wxf_A Phosphatidylinositol-4, 23.2 20 0.00082 11.9 0.7 44 570-624 681-724 (940)
217 1dc1_A Bsobi restriction endon 23.1 21 0.00087 11.7 3.5 36 602-643 109-145 (323)
218 3ouz_A Biotin carboxylase; str 23.1 21 0.00087 11.7 3.7 32 39-72 4-35 (446)
219 1e7u_A Phosphatidylinositol 3- 23.0 21 0.00087 11.7 1.2 45 569-624 697-741 (961)
220 1vim_A Hypothetical protein AF 22.9 19 0.00078 12.1 0.6 18 199-216 107-124 (200)
221 1m0s_A Ribose-5-phosphate isom 22.9 21 0.00088 11.7 4.5 52 805-857 56-109 (219)
222 1wvf_A 4-cresol dehydrogenase 22.9 19 0.0008 12.0 0.6 21 360-380 69-90 (520)
223 3ooo_A Proline dipeptidase; st 22.8 21 0.00088 11.6 1.8 30 26-55 2-31 (132)
224 2h31_A Multifunctional protein 22.7 21 0.00089 11.6 2.0 26 343-372 160-185 (425)
225 2c7f_A Alpha-L-arabinofuranosi 22.6 21 0.00089 11.6 3.9 45 30-74 62-136 (513)
226 1ux8_A YJBI protein; oxygen st 22.4 21 0.0009 11.6 4.0 73 693-765 48-126 (132)
227 3fmt_A Protein SEQA; protein-D 22.3 21 0.0009 11.6 3.5 21 455-475 138-158 (162)
228 2abk_A Endonuclease III; DNA-r 22.2 22 0.00091 11.5 3.4 17 375-392 116-132 (211)
229 1ug6_A Beta-glycosidase; gluco 22.1 22 0.00091 11.5 2.9 17 198-214 100-116 (431)
230 1cxq_A Avian sarcoma virus int 21.9 22 0.00091 11.5 3.2 19 197-215 81-99 (162)
231 1yqd_A Sinapyl alcohol dehydro 21.8 22 0.00092 11.5 4.1 46 578-623 309-355 (366)
232 1uuf_A YAHK, zinc-type alcohol 21.7 22 0.00092 11.5 4.1 40 580-619 318-358 (369)
233 3k8k_A Alpha-amylase, SUSG; al 21.6 22 0.00092 11.5 4.0 13 376-388 173-185 (669)
234 3ahy_A Beta-glucosidase; cellu 21.6 22 0.00092 11.5 5.3 48 24-72 59-123 (473)
235 1yub_A Ermam, rRNA methyltrans 21.6 22 0.00093 11.5 1.1 54 360-413 18-77 (245)
236 3g8r_A Probable spore coat pol 21.6 22 0.00093 11.5 2.7 43 381-435 208-250 (350)
237 3ces_A MNMG, tRNA uridine 5-ca 21.5 16 0.00067 12.6 0.0 11 611-621 387-397 (651)
238 1sg6_A Pentafunctional AROM po 21.4 22 0.00094 11.4 4.5 19 803-821 314-332 (393)
239 1kg2_A A/G-specific adenine gl 21.4 22 0.00094 11.4 3.0 24 839-862 111-134 (225)
240 1ccw_A Protein (glutamate muta 21.2 22 0.00094 11.4 5.3 15 200-214 46-60 (137)
241 1k77_A EC1530, hypothetical pr 21.2 22 0.00094 11.4 3.8 51 21-72 9-59 (260)
242 1fad_A Protein (FADD protein); 21.1 22 0.00094 11.4 4.0 37 426-478 12-48 (99)
243 1dd3_A 50S ribosomal protein L 20.8 23 0.00096 11.3 2.9 46 694-758 72-123 (128)
244 2dzd_A Pyruvate carboxylase; b 20.8 23 0.00096 11.3 4.2 31 40-72 5-35 (461)
245 3ccf_A Cyclopropane-fatty-acyl 20.8 14 0.00058 13.2 -0.5 18 143-160 59-76 (279)
246 2jy5_A Ubiquilin-1; UBA, alter 20.7 22 0.00091 11.5 0.5 24 339-362 10-33 (52)
247 2aam_A Hypothetical protein TM 20.5 23 0.00097 11.3 3.1 20 361-380 170-191 (309)
248 2knz_A Ubiquilin-4; cytoplasm, 20.5 23 0.00097 11.3 1.7 22 339-360 9-30 (53)
249 1wxp_A THO complex subunit 1; 20.4 23 0.00097 11.3 5.1 49 412-478 4-52 (110)
250 1qtw_A Endonuclease IV; DNA re 20.4 23 0.00098 11.3 4.5 51 14-69 4-63 (285)
251 3cb2_A Gamma-1-tubulin, tubuli 20.3 17 0.0007 12.5 -0.1 55 334-404 115-169 (475)
252 1wyz_A Putative S-adenosylmeth 20.1 23 0.00099 11.2 4.1 103 347-466 88-190 (242)
253 2kng_A Protein LSR2; DNA-bindi 20.1 23 0.00099 11.2 1.8 21 362-383 17-37 (55)
254 1vkc_A Putative acetyl transfe 20.1 23 0.00099 11.2 3.8 16 196-211 112-127 (158)
255 1tvk_B Tubulin beta chain; epo 20.0 14 0.00057 13.2 -0.6 47 333-393 112-158 (427)
No 1
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=100.00 E-value=0 Score=2408.03 Aligned_cols=1014 Identities=42% Similarity=0.681 Sum_probs=955.6
Q ss_pred CCCCCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCC
Q ss_conf 6689881334331444764432998999999997899--88998116517749999999997699638999999854766
Q 537021.9.peg.7 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQ--PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82 (1033)
Q Consensus 5 ~~~~~~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~--~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~ 82 (1033)
|.+..+||||||||+||+|||+++|++||++|+++|| |||||||||||||+++|+++|+++|||||+|||+|+.++..
T Consensus 1 m~~~m~FvhLhvhS~YSlLdg~~~i~~Lv~~Ake~G~~~pAvAiTDh~nl~Gav~F~~~akk~gIKPIiG~E~~v~~~~~ 80 (1220)
T 2hpi_A 1 MGSKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESR 80 (1220)
T ss_dssp ----CCCCCCSBCCTTSTTTCCCCHHHHHHHHHHHCCSSCEEEEEEETCCTTHHHHHHHHHTTTCEEEEEEEEEEESSCT
T ss_pred CCCCCCCHHHCCCCCCCHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
T ss_conf 99988524114477471314046999999999976988988999608888779999999997699848878999658641
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCC
Q ss_conf 43344565666677539999569689999999998997324877874007899986348988998197679678888779
Q 537021.9.peg.7 83 LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 (1033)
Q Consensus 83 ~~~~~~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~ 162 (1033)
.++.. +.......+|++|||||++||+|||+|+|.+|++ +++++||+++++|.+ |++||||+|||..|+++++++.+
T Consensus 81 ~~~~~-~~~~~~~~~hlvLLAkN~~GY~NL~kL~S~a~~~-g~~~~Pri~~~~L~~-~~egLI~lsgc~~g~i~~~l~~~ 157 (1220)
T 2hpi_A 81 FDRKR-GKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLE-GFYEKPRIDREILRE-HAQGLIALSGCLGAEIPQFILQD 157 (1220)
T ss_dssp TCCCC-C-----CEEEEEEEECSHHHHHHHHHHHHHHHHT-CBSSSBEECHHHHHH-TCTTEEEECCSTTBHHHHHHHTT
T ss_pred CCCCC-CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHH-CCCCCEEECCCCCCHHHHHHHCC
T ss_conf 23334-5667787201899978999999999999999970-787888778999985-07991996487436688998679
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH-HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 97899999999987659868999943991158-99999999999818989980883007878899998766884698576
Q 537021.9.peg.7 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 (1033)
Q Consensus 163 ~~~~a~~~l~~l~~~Fgd~~ylEl~~~~~~e~-~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~l~ 241 (1033)
+.+.|++.+.+|+++||+|||+|||+|+..++ .++..++++|+++++|+||||||||++++|+.+|++|+||++|++++
T Consensus 158 ~~~~a~~~l~~~~~iFgd~~YlEiq~~~~~~~~~~n~~li~lA~~~~iplVATndvhYl~~eD~~~hdvL~~I~~g~~l~ 237 (1220)
T 2hpi_A 158 RLDLAEARLNEDLSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLD 237 (1220)
T ss_dssp CHHHHHHHHHHHHHHHGGGEEEEECCSSCHHHHHHHHHHHHHHHHTTCCEEECCCBSBSSGGGHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 98999999999998648968999951898689999999999999849999997987407761699999999985799326
Q ss_pred CCCCCCC-CCCCCCCCHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 5310024-53432343478875122035---89987886411100013322---10234555756887768988999876
Q 537021.9.peg.7 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVH---APILPRFIEKECDDIQKEEENELRNK 314 (1033)
Q Consensus 242 ~~~~~~~-~~~~yLks~eEM~~~f~~~p---eAi~NT~~IAe~c~~~l~~~---~~~lP~f~~p~~~~~~~~~~~~Lr~l 314 (1033)
++++.++ +.++||||++||.++|+++| +|++||.+||++|+++++.. .++||+||+|++ .++++||+++
T Consensus 238 d~~r~~~~~~e~ylKS~eEM~~lf~~~p~~~eal~NT~~IA~~c~~~l~~~~~~~~~lP~f~~p~g----~t~~~yLr~l 313 (1220)
T 2hpi_A 238 DPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEG----RTEAQYLREL 313 (1220)
T ss_dssp CSSCCCCSSSCCBCCCHHHHHHHSCHHHHCSHHHHHHHHHHHTCCCCCCCTTSCCCBCCCCCC--C----CCHHHHHHHH
T ss_pred CCCCCCCCCHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCC----CCHHHHHHHH
T ss_conf 463334786452379899997643345014678899999987531231136544455898889999----8989999999
Q ss_pred HHHHHHHCCCCCCC-----------------------------------------------CCCCCHHHHHHHHHHHHHH
Q ss_conf 54103420124643-----------------------------------------------2457838999998877898
Q 537021.9.peg.7 315 AVAGLEVRLAQGAI-----------------------------------------------AKGYHAQDYRQRLDFELNV 347 (1033)
Q Consensus 315 ~~~Gl~~R~~~~~~-----------------------------------------------~~~~~~~~y~~RLe~EL~v 347 (1033)
|++||++||++... .++...++|.+||+|||+|
T Consensus 314 ~~~Gl~~Ry~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Rl~~EL~i 393 (1220)
T 2hpi_A 314 TFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSV 393 (1220)
T ss_dssp HHHHHHHHCTTTSCHHHHHHHHTTC-------CHHHHHHHHHHCCHHHHTTTTTC--------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99689986476651667777766423566542135567788888777788876430332243321048899999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 98606305578889999985104764334444204667765544037563332310567621001457875333656878
Q 537021.9.peg.7 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 (1033)
Q Consensus 348 I~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDiDf~~~~R 427 (1033)
|.+|||++|||||||+|+|||++||+||||||||||||||||||||+||||+|||||||||||+|.+||||||||++++|
T Consensus 394 I~~~gf~~YFLiv~d~v~~ak~~~i~vGpGRGSaagSLVaY~LgIT~vDPi~~~LlFERFLnpeR~~~PDIDiDf~~~~R 473 (1220)
T 2hpi_A 394 IERMGFPGYFLIVQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRER 473 (1220)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTTCCBCSCCGGGGGCHHHHHTTSCCSCTTTTTCCHHHHSCTTSCCCCCCEEEEETTTH
T ss_pred HHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 98179983687613788998728916689999877882340257877684335866788556013666674557774658
Q ss_pred HHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCH-HHHHCCHHHHHHHHCCC
Q ss_conf 99999998303802155422077877889999999752799889886543101458982443-44522988788643074
Q 537021.9.peg.7 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADP 506 (1033)
Q Consensus 428 ~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 506 (1033)
++||+||.+|||.++||||+||+|+++|+|+|||||++|+|+.++|+++|+||...+...++ ++++..++|++....++
T Consensus 474 ~~vi~Yv~~kyG~~~Va~I~Tf~t~~~k~airdv~r~~g~~~~~~~~i~k~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1220)
T 2hpi_A 474 DRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQVVPELRAEMEKDE 553 (1220)
T ss_dssp HHHHHHHHHHHCTTTEEEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHTTSCBSSSSBCCTTTC-----CCTTHHHHCH
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHHHHCCH
T ss_conf 99999999871753112200000067889999999983733888888764078666775315667653789997764399
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCCCCCCCEEEEEECHHHHHHCCCHHHHHHHCCHHHHHHHH
Q ss_conf 20268898720112210024474403352566666200123676886688510213343112321356541789999999
Q 537021.9.peg.7 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 (1033)
Q Consensus 507 ~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~~e~~gl~K~D~Lgl~~L~~i~~~~ 586 (1033)
.+++++++|.+|||++||+|+||||||||++||++++|++++. ++.++|||||+++|++||+|||||||+|||+|++++
T Consensus 554 ~~~~l~~~A~~leG~~r~~g~Ha~Gvvi~~~~l~~~~P~~~~~-~~~~~tq~d~~~~e~~gLlK~D~LGl~~Ltii~~~~ 632 (1220)
T 2hpi_A 554 RIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQ-EGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEAR 632 (1220)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEEEEEEEECSSCGGGTSCEEECT-TCCEEESSCHHHHHTTTBEEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEECC-CCCCEEEECHHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999824976546767887998568865434047868-998247620002754687454665146478999999
Q ss_pred HHHHH-HCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98874-02543433234435889987620141012211453478888771740488887665411411342003688850
Q 537021.9.peg.7 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 (1033)
Q Consensus 587 ~~i~~-~~~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~~~~~l~~~~p~~~~dl~~~~al~RPGp~~~~~~yi~rk 665 (1033)
++|++ +|.++|+++||+||++||+||++|+|.||||+||+||++++++++|++|+||++++||||||||++++.|+.||
T Consensus 633 ~~i~~~~~~~~~~~~ip~dD~~~~~l~~~g~t~GifQ~es~g~~~~l~~~~p~~~~dl~a~~al~RPGp~~~i~~~~~~k 712 (1220)
T 2hpi_A 633 RIVKESKGVELDYDRLPLDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRH 712 (1220)
T ss_dssp HHHHHHHCCCCCGGGCCTTCHHHHHHHHTTCCTTCTTCCSHHHHHHHHHHCCCSHHHHHHHHHHCSTTGGGHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99987038976631189876999999847521786755464066687518998788999998651887742024788885
Q ss_pred CCCCCCCC-----CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 46578502-----6966733410335530012568988788632684130788976201211016778789999986249
Q 537021.9.peg.7 666 NGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 (1033)
Q Consensus 666 ~g~e~~~~-----~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ead~lRra~~kk~~~~~~~~~~~f~~g~~~~g 740 (1033)
||+++++| +||.|++||++||||||||||||+|++.+||||++|||.||||||||+.++|++++++|++||.++|
T Consensus 713 ~g~~~~~y~~~~~~~~~l~~il~~TyGvivyQEqvM~i~~~~agfs~~eaD~lRram~KK~~~~m~~~~~~f~~g~~~~g 792 (1220)
T 2hpi_A 713 HGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERG 792 (1220)
T ss_dssp TTCSCCCCTTSTTTHHHHHHHHGGGTTCCCBHHHHHHHHHHHSCCCHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 48777655567753588998874226830129999989999738986778899872066878999999877505651248
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999999750001331014788899999999997302666777510023542025899988886368503552
Q 537021.9.peg.7 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 (1033)
Q Consensus 741 ~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~~~~~~~~i~e~~~~gi~vl~Pd 820 (1033)
++++.|++||++|++||+||||||||+|||++||||||||+|||+|||||+||++++++++++.|++|||++||+|+|||
T Consensus 793 ~~~~~a~~i~~~i~~fa~YgFnKSHa~aYa~iayqtAylK~~yP~eF~aa~l~~~~~~~~~~~~~i~e~~~~gi~v~~Pd 872 (1220)
T 2hpi_A 793 VPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPD 872 (1220)
T ss_dssp CCSHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTTCHHHHHHHHHHHHTTTCCEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 77999999999999987416684069999999999999988499999999812788984478999999987324656982
Q ss_pred CCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 3342100353198698502685896989999999998-379999978999734824799899998886767234790389
Q 537021.9.peg.7 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 (1033)
Q Consensus 821 IN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df~~rv~~~~~nk~~le~Li~aGAfD~~~~~R~ 899 (1033)
||+|.++|++++++||+||++|||||+++++.|+++| ++|||+|++||+.|++.+.+||+++|+||+|||||+|| ||+
T Consensus 873 iN~S~~~f~~~~~~i~~gL~aIKgvg~~~~~~Ii~eR~~~G~f~sl~Df~~Rvd~~~~nk~~lE~LIkaGAFD~~g-~R~ 951 (1220)
T 2hpi_A 873 VNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRA 951 (1220)
T ss_dssp TTTCCSSCEEETTEEECCSTTSSSCCHHHHHHHHHHHHHSCSCCSHHHHHHHSCTTTSCHHHHHHHHHHTTTGGGS-CHH
T ss_pred ECCCCCCCEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC-CHH
T ss_conf 0124564442486345777761585067799999999856998747789988520469999999999838755534-499
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCEEECCCCHHHHHHHHHHC-
Q ss_conf 9999899999999988654312777866665555655776668999988899985788726211638558999999874-
Q 537021.9.peg.7 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM- 978 (1033)
Q Consensus 900 ~ll~~i~~~~~~~~~~~~~~~~~q~~LF~~~~~~~~~~~~~~~~~~~~~~e~l~~E~e~LGf~lS~HPl~~~~~~l~~~- 978 (1033)
+||++++.+++++....+++..+|.+||+... .+.+++.++|+..|++++|+|+||||+|+|||+.|+. +...
T Consensus 952 ~ll~~l~~~l~~~~~~~~~~~~~q~~LF~~~~-----~~~~~~~~~~~~~e~L~~Eke~LGfylS~HPL~~y~~-l~~~~ 1025 (1220)
T 2hpi_A 952 RLLASLEPLLRWAAETRERGRSGLVGLFAEVE-----EPPLVEASPLDEITMLRYEKEALGIYVSGHPVLRYPG-LREVA 1025 (1220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSSSSCCC-----CCCCCCCCCCCHHHHHHHHHHHHSSCCSCCGGGGCTH-HHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCCHHHH-HHHHH
T ss_conf 99981999999999986521036878667777-----7667789998999999999973334426683100898-99773
Q ss_pred --CCCCHHHH-HCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECC
Q ss_conf --89768898-50558988999999961121015888769999998497049999539
Q 537021.9.peg.7 979 --GIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 (1033)
Q Consensus 979 --~~~~~~~~-~~~~~g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g~~e~~iFP 1033 (1033)
.+..+.+. .+...+++|+++|+|+++|+++||+|++|+|+|+||++|.+|++|||
T Consensus 1026 ~~~~~~l~~~~~~~~~~~~v~vaG~I~~v~~~~TKkG~~maf~tleD~tG~iev~vF~ 1083 (1220)
T 2hpi_A 1026 SCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFG 1083 (1220)
T ss_dssp SSCTTTHHHHHSSSSSSCEEEEEEEECCC------------CEEEEETTEEEEEC---
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECH
T ss_conf 4887889999972789988999999978897327999969999999899988999837
No 2
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=100.00 E-value=0 Score=2098.63 Aligned_cols=887 Identities=45% Similarity=0.784 Sum_probs=842.6
Q ss_pred CCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 98813343314447644329989999999978998899811651774999999999769963899999985476643344
Q 537021.9.peg.7 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87 (1033)
Q Consensus 8 ~~~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~ 87 (1033)
.|+||||||||+||+|+|+++|++||++|+++||+||||||||||+|+++|+++|+++|||||+|||+++..+..
T Consensus 3 ~p~FvhLh~hS~yS~l~g~~~~eelv~~A~~~g~~alAiTD~~nl~G~v~F~~a~~k~gIKpIiG~e~~v~~~~~----- 77 (910)
T 2hnh_A 3 EPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLL----- 77 (910)
T ss_dssp CCCCCCCCBCCGGGSSSCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEECTTT-----
T ss_pred CCCCHHHCCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCC-----
T ss_conf 899202207775803131369999999999859999999528859789999999997699827788999833877-----
Q ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHHHH
Q ss_conf 56566667753999956968999999999899732487787400789998634898899819767967888877997899
Q 537021.9.peg.7 88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 (1033)
Q Consensus 88 ~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~~a 167 (1033)
.+..+|++|||||++||+|||+|+|.+++++.++..|++++++|.+ +++||||+|||..|++.+++..++.+.+
T Consensus 78 -----~~~~~~l~lLAKN~~GykNL~kLiS~a~~~~~~~~~p~i~~~~L~~-~~egLIvlsg~~~g~i~~~l~~~~~~~a 151 (910)
T 2hnh_A 78 -----GDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIE-LNEGLILLSGGRMGDVGRSLLRGNSALV 151 (910)
T ss_dssp -----TTCCEEEEEEECSHHHHHHHHHHHHHHHHHCCCTTCCCEETTHHHH-SCTTEEEECCGGGSHHHHHHHHTCHHHH
T ss_pred -----CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-CCCCEEEEECCCCCHHHHHHHCCCHHHH
T ss_conf -----7870688999799999999999999998704578888688999986-7999799858855789999876999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999999876598689999439911-589999999999981898998088300787889999876688469857653100
Q 537021.9.peg.7 168 EKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 (1033)
Q Consensus 168 ~~~l~~l~~~Fgd~~ylEl~~~~~~-e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~l~~~~~~ 246 (1033)
++++.+|+++||++||+|+|+|+.. ++..+..++++|+++++|+||||||||++++|+++|++|.||+.++++++.++.
T Consensus 152 ~~~i~~l~~iF~~~~yiEl~~~g~~~~~~~n~~li~la~~~~iplVATndv~Y~~~eD~~~~dvl~~I~~~~~l~d~~~~ 231 (910)
T 2hnh_A 152 DECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRP 231 (910)
T ss_dssp HHHHHHHHHHCTTSEEEEECCSSCTTHHHHHHHHHHHHHHHTCCEEECCCBCBSSGGGHHHHHHHHHHHHTCCTTCTTSC
T ss_pred HHHHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999867850896112179855999999999999980996110044124305028899999997329745032221
Q ss_pred C-CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 2-453432343478875122035899878864111000133221023455575688776898899987654103420124
Q 537021.9.peg.7 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325 (1033)
Q Consensus 247 ~-~~~~~yLks~eEM~~~f~~~peAi~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~l~~~Gl~~R~~~ 325 (1033)
+ .++++||||++||.++|+++|+|++||..||++|++.++...+.+|+|++|++ +++++|++++.+|+.+||+.
T Consensus 232 ~~~~~~~ylks~eEM~~lF~d~peal~Nt~~Ia~~c~~~~~~~~~~lP~~~~~~~-----~~~~~l~~l~~~Gl~~r~~~ 306 (910)
T 2hnh_A 232 RNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAF 306 (910)
T ss_dssp CCCCTTCBCCCHHHHHHHTTTCHHHHHHHHHHHHHCCCCCCCSSCCCCCCCCTTS-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHH
T ss_conf 2378643489899999997451999997999988520244305566898876678-----84899999999889998641
Q ss_pred CCCC---CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 6432---4578389999988778989860630557888999998510476433444420466776554403756333231
Q 537021.9.peg.7 326 GAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 (1033)
Q Consensus 326 ~~~~---~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~L 402 (1033)
.... .....++|++||++||+||.+|||++|||||||+|+|||++||+||||||||||||||||||||+||||+|||
T Consensus 307 ~~~~~~~~~~~~~~y~~RL~~EL~iI~~~gf~~YFLiv~diV~~Ak~~gi~vGpgRGSaagSLVaylLgIT~VDPi~~~L 386 (910)
T 2hnh_A 307 LFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL 386 (910)
T ss_dssp HCCSHHHHHHHSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCBCSCCTTGGGCHHHHHTTSSCSCTTTTTC
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCHHCCC
T ss_conf 26411220103499999999999999868980999999999999997894524688814889999997176779020388
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 05676210014578753336568789999999830380215542207787788999999975279988988654310145
Q 537021.9.peg.7 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 (1033)
Q Consensus 403 lFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~ 482 (1033)
+|||||||+|++|||||+||++++|++|++|+++|||.++||+|+||+|+++|+|+|||||++|+|+.++|+++|+||..
T Consensus 387 lFERFLn~~R~~~PDID~Df~~~~r~~v~~y~~~~yG~~~va~i~Tf~t~~~ksA~rdv~r~~g~~~~~~~~i~~~i~~~ 466 (910)
T 2hnh_A 387 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 (910)
T ss_dssp CGGGTSCTTSCCCCCCCCEECGGGHHHHHHHHHHHHCGGGEEEECCEEECCHHHHHHHHHHHTTCCHHHHHHHHTTSCCC
T ss_pred CHHHHCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 79997487667778888662211319999999999485514885310023688999999998589999999998526766
Q ss_pred CCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHEECCCCCCCCCEEEEEECHH
Q ss_conf 89824434452298878864307420268898720112210024474403352566666200123676886688510213
Q 537021.9.peg.7 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562 (1033)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~leg~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~ 562 (1033)
++.... .+...+++++.....++.++.++++|++|||++||+|+||||||||++||.+++|++++.+++.++|||||++
T Consensus 467 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~leG~~r~~~~Ha~Gvvi~~~~l~~~~p~~~~~~~~~~~~q~d~~~ 545 (910)
T 2hnh_A 467 PGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545 (910)
T ss_dssp TTCCHH-HHHHHCTHHHHHHHHCHHHHHHHHHHHHHTTCEEEECSSCCEEEECSSCGGGTCCEECCTTSCSCEESSCHHH
T ss_pred CCCCHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 686456-6666465668877632589999999988258744434567879983887431355444788870587304753
Q ss_pred HHHHCCCHHHHHHHCCHHHHHHHHHHHHHH-C----CCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCC
Q ss_conf 343112321356541789999999988740-2----54343323443588998762014101221145347888877174
Q 537021.9.peg.7 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 (1033)
Q Consensus 563 ~e~~gl~K~D~Lgl~~L~~i~~~~~~i~~~-~----~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~es~~~~~~l~~~~p 637 (1033)
+|++||+|||||||+|||+|++++++|+++ + ..+|+..||+||++||+||++|+|.||||+||+|||++|++++|
T Consensus 546 ~e~~gllK~D~Lgl~~lt~i~~~~~~i~~~~~~~~~~~~~~~~ip~~D~~~~~l~~~g~t~Gifq~es~~~~~~l~~~~P 625 (910)
T 2hnh_A 546 VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQP 625 (910)
T ss_dssp HHHTTCEEEEECCCCHHHHHHHHHHHHHHTTTTTTCCCCCGGGCCSCCHHHHHHHHTTCCTTSTTCCSHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 31168731236514469999999999986317667886787548986589999760425578676788799999986599
Q ss_pred CHHHHHHHHHHHCCCHHHHHHH--HHHHHHCCCCCCCCC-----CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 0488887665411411342003--688850465785026-----966733410335530012568988788632684130
Q 537021.9.peg.7 638 DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 (1033)
Q Consensus 638 ~~~~dl~~~~al~RPGp~~~~~--~yi~rk~g~e~~~~~-----hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ea 710 (1033)
++|+||++++||+||||+++++ .|++|++|+++++|+ ||.|++||++||||||||||||+|++.+||||+++|
T Consensus 626 ~~f~dl~~~~al~Rpgp~~~~~~~~~i~r~~~~~~~~y~~~~~~h~~l~~il~~T~Gv~vyqEqim~i~~~~ag~~~~~a 705 (910)
T 2hnh_A 626 DCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 705 (910)
T ss_dssp CSHHHHHHHHHHSSHHHHTTTHHHHHHHHHTTSSCCCSBCSSSBCGGGHHHHGGGTTCCCBHHHHHHHHHHHHCCCHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCHHHH
T ss_conf 87999999998127776334640378876058877677643325688999971457835539999867787669986789
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78897620121101677878999998624999999999999999750001331014788899999999997302666777
Q 537021.9.peg.7 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 (1033)
Q Consensus 711 d~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa 790 (1033)
|.+|||||||+.++|++.++.|++||.++|++++.|++||++|++||+||||||||+|||++|||+||||+|||+|||||
T Consensus 706 d~~Rka~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~fa~Y~FnksHa~aYa~~ay~~AylK~~yP~eF~~a 785 (910)
T 2hnh_A 706 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAA 785 (910)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99998734467177899999999779984999999999999998874518778999999999999999987078999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHH
Q ss_conf 510023542025899988886368503552334210035319-8698502685896989999999998-37999997899
Q 537021.9.peg.7 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868 (1033)
Q Consensus 791 ~L~~~~~~~~~~~~~i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df 868 (1033)
+||+++++++++..++.||+++||+|+|||||+|.++|++++ +.||+||++|||||+++++.|+++| ++|||+|+.||
T Consensus 786 ~l~~~~~~~~k~~~~~~e~~~~gi~i~~pdin~S~~~~~~~~~~~i~~gl~~ikgig~~~a~~Iv~~R~~~~~f~s~~Df 865 (910)
T 2hnh_A 786 VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDL 865 (910)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCEECCCTTTCBSSCEECTTSCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEEECHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 81588999389999999999879979898203678845876899598325435998999999999989747998999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9734824799899998886767234790389999989999999
Q 537021.9.peg.7 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911 (1033)
Q Consensus 869 ~~rv~~~~~nk~~le~Li~aGAfD~~~~~R~~ll~~i~~~~~~ 911 (1033)
+.|++.+.+|++++|.||+|||||+||.||++|++++++++++
T Consensus 866 ~~r~~~~~~~~~~~~~Li~~gafd~~~~~R~~ll~~l~~~~~~ 908 (910)
T 2hnh_A 866 CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKA 908 (910)
T ss_dssp TTSSCSSSSCHHHHHHHHHTTTTTTTSSCHHHHHTTSSSSGGG
T ss_pred HHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9870646799999999987799746067899999989999984
No 3
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=100.00 E-value=0 Score=1692.59 Aligned_cols=807 Identities=23% Similarity=0.302 Sum_probs=706.0
Q ss_pred CCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC-
Q ss_conf 8133433144476443299899999999789988998116517749999999997699638999999854766433445-
Q 537021.9.peg.7 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQ- 88 (1033)
Q Consensus 10 ~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~- 88 (1033)
-.|||||||.||+|||+++|++||++|+++||+||||||||||+|+++|+++|+++|||||+|||+|+.++......+.
T Consensus 115 krVeLH~HT~yS~ldg~~~~~elv~~A~e~G~~AiAITDhgnl~G~~ef~~aakk~GIKpIiG~E~~l~dd~~~i~~~~~ 194 (1041)
T 3f2b_A 115 KRVELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVDDGVPIAYNET 194 (1041)
T ss_dssp CCCBCCBCCTTSTTTCCSCHHHHHHHHHHTTCSCEEECCBSCCTTHHHHHHHHHHHTCCEEEEEEEEEECC---------
T ss_pred CEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 70562478843454002789999999998599999883038587899999999986998699889998369753334431
Q ss_pred --CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHHH
Q ss_conf --656666775399995696899999999989973248778740078999863489889981976796788887799789
Q 537021.9.peg.7 89 --GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166 (1033)
Q Consensus 89 --~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~~ 166 (1033)
........+|+++||||++||+|||+|+|.+|++ ++++.|++++++|.+ +++||||+|||..|++.++++.+..++
T Consensus 195 ~~~~~~~~~~~hlilLAKN~~GykNL~kLvS~s~~~-~f~~~PrI~~~~L~~-~~eGLIilSgc~~Gel~~~ll~~~~e~ 272 (1041)
T 3f2b_A 195 HRRLGSGSGPFHVTLLAQNETGLKNLFKLVSLSHIQ-YFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEE 272 (1041)
T ss_dssp ---------CEEEEEEECSHHHHHHHHHHHHHHHTT-TCSSSCCEEHHHHHH-TCTTEEEECCSSSSSSTTC--------
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHH-CCCCEEEECCCCCCHHHHHHHCCCHHH
T ss_conf 123456788753799939999999999999999984-699986577999985-799869973887677999998089999
Q ss_pred HHHHHHH--HHHHCCCCEEEEEEC-CCHH-HH---HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999--987659868999943-9911-58---999999999998189899808830078788999987668846985
Q 537021.9.peg.7 167 AEKRLLT--FKKLFGDRLYVNLQR-HRGY-DR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 (1033)
Q Consensus 167 a~~~l~~--l~~~Fgd~~ylEl~~-~~~~-e~---~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~~ 239 (1033)
+++.+.+ |.++|+.++|.+++. +... ++ ..+..++++|+++++|+||||||||++++|+.+|++|.||+.+..
T Consensus 273 ~~~~~~~y~~lei~~~~~y~~li~~~~~~~~~~~~~~~~~li~lAkk~~iplVATnDvhYl~~eD~~~~~iL~~i~~~~~ 352 (1041)
T 3f2b_A 273 VEDIARFYDFLEVHPPDVYKPLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGGAN 352 (1041)
T ss_dssp CCTTGGGCSBEEECCGGGGCCC----CCSCHHHHHHHHHHHHHHHHHTTCCEEECCCBSBSSGGGHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999857862112011015754089999999999999998099989957866788889999999986047998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCHHHH------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 765310024534323434788751220358------99878864111000133221023455575688776898899987
Q 537021.9.peg.7 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 (1033)
Q Consensus 240 l~~~~~~~~~~~~yLks~eEM~~~f~~~pe------Ai~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~ 313 (1033)
..... ..+++||+|++||.++|+++|+ +++||..||++|+. ..|.+|++.+|.+ .+++++|++
T Consensus 353 ~~~~~---~~~e~ylks~eEM~~~F~~l~~e~~~e~~i~Nt~~Ia~~~~~----~~p~~~~~~~P~~----~~~~e~L~~ 421 (1041)
T 3f2b_A 353 PLNRH---ELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIGD----VKPIKDELYTPRI----EGADEEIRE 421 (1041)
T ss_dssp SSTTS---CCCCCBCCCHHHHHHHHGGGHHHHHHHHHTHHHHHHHHTCCC----CCSSCSSCBCCCC----TTHHHHHHH
T ss_pred HHHHH---HHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCC----CCHHHHHHH
T ss_conf 36653---323430478999999864332778888999989999988501----3556864457655----567899999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 65410342012464324578389999988778989860630557888999998510476433444420466776554403
Q 537021.9.peg.7 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 (1033)
Q Consensus 314 l~~~Gl~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT 393 (1033)
+|++|+++||++. .++.|++||++||++|.+|||++|||||||+|+|||++||+|| |||||||||||||||||
T Consensus 422 l~~~~~~~~yg~~------l~~~~~~RL~~EL~vI~~~Gf~~YFLIv~dlV~~a~~~gi~vg-gRGSaagSlVay~LgIT 494 (1041)
T 3f2b_A 422 MSYRRAKEIYGDP------LPKLVEERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEIT 494 (1041)
T ss_dssp HHHHHHHHHHCSS------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCE-ECGGGGGCHHHHHTTSC
T ss_pred HHHHHHHHHCCCC------CCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHCCCC
T ss_conf 9987777622657------7288999999999999850568775999999999986798625-66314567999861765
Q ss_pred CCCHHH-----------------------------------------CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 756333-----------------------------------------231056762100145787533365687899999
Q 537021.9.peg.7 394 DIDPLR-----------------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 (1033)
Q Consensus 394 ~VDPi~-----------------------------------------~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~ 432 (1033)
+||||+ |||+|||||||+|.+|||||+||++++|++|++
T Consensus 495 eVDPl~~hy~c~~c~~~ef~~~~~~~~g~dlpd~~cp~c~~~~~~dg~~L~FErFLn~~r~~~PDIDlDF~~~~r~~v~~ 574 (1041)
T 3f2b_A 495 EVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHN 574 (1041)
T ss_dssp SCCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEEECCCCCTHHHHTTTSCSCCCEEEEEETTTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHCCCCCCCCCHHHCCCCHHHHHHHHH
T ss_conf 64898632246521112114555445677776544521101331457444142215833023453211253788999999
Q ss_pred HHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCHHHH
Q ss_conf 99830380215542207787788999999975279988988654310145898244344522988788643074202688
Q 537021.9.peg.7 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512 (1033)
Q Consensus 433 y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1033)
|++++||+++||+|+||+|+++|+|++++.+. +...+.. ....++.
T Consensus 575 yv~~~yG~~~va~i~T~~t~~~k~A~~~vk~~---------------~~~~~~~-------------------~r~aei~ 620 (1041)
T 3f2b_A 575 YTKVLFGEDNVYRAGTIGTVADKTAYGFVKAY---------------ASDHNLE-------------------LRGAEID 620 (1041)
T ss_dssp HHHHHHCTTSEEEEEEEEECCHHHHHHHHHHH---------------HHHTTCC-------------------CCHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHHHHHHHHC---------------CCCCCHH-------------------HHHHHHH
T ss_conf 88876360037898631105766564131001---------------0124324-------------------6799999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCC--CHHHHEECCCCC---CCCCEEEEEECHHHHHHCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 9872011221002447440335256--666620012367---68866885102133431123213565417899999999
Q 537021.9.peg.7 513 EISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 (1033)
Q Consensus 513 ~~a~~leg~~r~~~~Ha~Gvvi~~~--~l~~~~p~~~~~---~~~~~~~q~d~~~~e~~gl~K~D~Lgl~~L~~i~~~~~ 587 (1033)
++|++|||+|||+|+|||||||+++ ||+++||++.++ .+++++|||||+++|+ ||||||||||+|||+|+.+.+
T Consensus 621 ~la~~leG~~R~~g~HagGvVI~p~~~~l~d~~Pl~~~~~~~~~~~~~tqfd~~~ie~-gLlK~D~LGl~~lt~I~~~~~ 699 (1041)
T 3f2b_A 621 RLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQD 699 (1041)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEECCTTSCGGGTCCEECGGGCTTCSSCEEEEEHHHHTT-TBCEEEEEEEHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHC-CCEEEEECCCCCHHHHHHHHH
T ss_conf 9861357751144427771798057531221256034477776564244201222222-866686537885799999987
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHCCC--------------CCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCH
Q ss_conf 88740254343323443588998762014--------------1012211453478888771740488887665411411
Q 537021.9.peg.7 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 (1033)
Q Consensus 588 ~i~~~~~~~d~~~ip~~D~~~~~l~~~g~--------------t~GvFQ~es~~~~~~l~~~~p~~~~dl~~~~al~RPG 653 (1033)
++ .+|+.+||+||++||++|++++ |.|||||||++||++|++++|++|+|||+++||+|||
T Consensus 700 l~-----~id~~~Ip~dD~~t~~lf~~~~~~~~~~~~~~~~~~T~GifQ~eS~~~r~~L~~~kP~~f~DLv~i~aL~rp~ 774 (1041)
T 3f2b_A 700 LS-----GIDPKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGT 774 (1041)
T ss_dssp HH-----CCCGGGCCSCCHHHHHTTTCSGGGTSCHHHHTCSSSCTTSTTTTSHHHHHHHHHHCCCSHHHHHHHHHHTSST
T ss_pred HH-----CCCHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 60-----2787657765677888764024112216888742375556741116799999970898667678787510364
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 34200368885046578502696673341033553001256898878863268413078897620121101677878999
Q 537021.9.peg.7 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 (1033)
Q Consensus 654 p~~~~~~yi~rk~g~e~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia~~~ag~~~~ead~lRra~~kk~~~~~~~~~~~f~ 733 (1033)
|+.. +|+++.+.+.||.|+++|+.|||||||| | ++|++.++|+.+|+++.|++. ++++|.
T Consensus 775 ~v~~-------~n~~e~i~~~~~~l~~vl~~t~gimvy~--i------~~g~~~~~a~~i~e~~rk~k~-----~~~~~~ 834 (1041)
T 3f2b_A 775 DVWL-------GNAQELIQNGTCTLSEVIGCRDDIMVYL--I------YRGLEPSLAFKIMESVRKGKG-----LTPEFE 834 (1041)
T ss_dssp TSTT-------TTHHHHHHTTSSCGGGSCCSHHHHHHHH--H------HTTCCHHHHHHHHHHHTTTCC-----CCHHHH
T ss_pred CHHH-------CCCCHHCCCCCCCHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHHCC-----CCHHHH
T ss_conf 1121-------1440110368757998850274799999--9------997779999999999997479-----989999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH---------HHHH
Q ss_conf 9986249999999999999997500013310147888999999999973026667775100235420---------2589
Q 537021.9.peg.7 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------KIKK 804 (1033)
Q Consensus 734 ~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~~~---------~~~~ 804 (1033)
+++.++|++++. ..+.+|++||||||||+|||++|||+||||+|||+|||||+||+++++++ ++..
T Consensus 835 ~~~~~~~v~~~~-----~~~~~~~~YgFnKSHAaAYa~iayq~AylK~hYP~eF~aa~ls~~~~~~d~~~~~~~~~~i~~ 909 (1041)
T 3f2b_A 835 AEMRKHDVPEWY-----IDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRK 909 (1041)
T ss_dssp HHHHHTTCCHHH-----HHHHHHCSCCCCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTCCCCCHHHHHHCHHHHHH
T ss_pred HHHHHCCCHHHH-----HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHCCHHHHHH
T ss_conf 988877868999-----999861527987899999999999999998605399999972568567755766321788999
Q ss_pred HHHHHHH------------------------CCCCCCCCCCCCCCE-EEEECCCEEEEEHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9988886------------------------368503552334210-035319869850268589698999999999837
Q 537021.9.peg.7 805 FCQDARQ------------------------FNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859 (1033)
Q Consensus 805 ~i~e~~~------------------------~gi~vl~PdIN~S~~-~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~ 859 (1033)
++.||++ +|++++|||||+|.+ .|.+++++||+||++|||||++++++|+++|++
T Consensus 910 ~i~e~~~~g~~~~~~~~~~~~~l~~~~e~~~rg~~~~~~di~~S~a~~f~i~~~~I~~gl~aIkGlG~~~a~~Iv~~R~~ 989 (1041)
T 3f2b_A 910 RIEEINAKGIQATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREE 989 (1041)
T ss_dssp HHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHTTCEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEECCCCEEEECHHHCCCCCHHHHHHHHHHHCC
T ss_conf 99999973985465322333223220678756884178863335662121059949951564389799999999998667
Q ss_pred CCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 999997899973482479989999888676723479038999998
Q 537021.9.peg.7 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 (1033)
Q Consensus 860 g~f~sl~df~~rv~~~~~nk~~le~Li~aGAfD~~~~~R~~ll~~ 904 (1033)
|||+|++||+.|+ .+||+++|.||++||||+|+.+|+..|++
T Consensus 990 g~F~s~~Df~~R~---~~~k~~le~Li~~Gafd~l~~~~q~~Lf~ 1031 (1041)
T 3f2b_A 990 GEFLSKEDLQQRG---KLSKTLLEYLESRGCLDSLPDHNQLSLFS 1031 (1041)
T ss_dssp SCCCSHHHHHHHH---TCCHHHHHHHHHTTTTTTSCSSCSCCCC-
T ss_pred CCCCCHHHHHHHH---CCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9999999999732---89999999999779977898328999982
No 4
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; two-domain protein containing predicted PHP-like metal-depen phosphoesterase; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=99.78 E-value=5.6e-27 Score=244.83 Aligned_cols=295 Identities=11% Similarity=-0.009 Sum_probs=189.3
Q ss_pred CHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC------------CCEEEEEEEEEE
Q ss_conf 13343314447644329989999999978998899811651774999999999769------------963899999985
Q 537021.9.peg.7 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG------------IQPIIGCQLDID 78 (1033)
Q Consensus 11 FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~g------------IKPIiG~E~~v~ 78 (1033)
-+-||+||.|| ||..+|+++|++|++.||++||||||+|++|+++|+++|++.| +..+.|.|....
T Consensus 20 ~~DLH~HT~~S--DG~~~p~~lv~~a~~~Gl~~iAiTDH~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 97 (343)
T 3e38_A 20 KCDFHMHSVFS--DGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITRA 97 (343)
T ss_dssp EEECCBCCTTT--TCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEECCEEEEECS
T ss_pred EEECCCCCCCC--CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 87778583732--7878799999999981999999887986537499999999864798744554058358861011364
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 47664334456566667753999956968999999999899732487787400789998634898899819767967888
Q 537021.9.peg.7 79 MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 (1033)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~ 158 (1033)
. ...|+..+-... +. ......+....+.... ..++.....+... . ..
T Consensus 98 ~---------------~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~~ 144 (343)
T 3e38_A 98 M---------------APGHFNAIFLSD-------------SN-PLEQKDYKDAFREAKK--QGAFMFWNHPGWD-S-QQ 144 (343)
T ss_dssp T---------------TTCEEEEESCSC-------------SG-GGCCSSHHHHHHHHHH--TTCEEEECCTTCT-T-TS
T ss_pred C---------------HHCCCCCCCCHH-------------HH-CCCCCCHHHHHHHHHH--CCCEEEECCCCCC-C-CC
T ss_conf 1---------------211441025624-------------30-4442139999999876--2770474242002-4-64
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 87799789999999998765986899994399115899999999999818989980883007878899998766884698
Q 537021.9.peg.7 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 (1033)
Q Consensus 159 l~~~~~~~a~~~l~~l~~~Fgd~~ylEl~~~~~~e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~ 238 (1033)
......... ... ...++..+++|++++.... ..++++|+++++|+|+++|+||..++|+..|+.+.|+.+..
T Consensus 145 ~~~~~~~~~--~~~--~~~~~~~~~IEv~n~~~~~----~~~~~la~~~~l~~va~sD~H~~~~~~~~~~~~~~~~~t~~ 216 (343)
T 3e38_A 145 PDTTKWWPE--HTA--LYQEGCMHGIEVANGHLYM----PEAIQWCLDKNLTMIGTSDIHQPIQTDYDFEKGEHRTMTFV 216 (343)
T ss_dssp SSCCCCCHH--HHH--HHHTTCCSEEEEEETTEEC----THHHHHHHHHTCEEEEECCBCSCHHHHCCGGGTCCCCEEEE
T ss_pred HHHHHHHHH--HHH--HHHHCCCCEEEEECCCCCH----HHHHHHHHHCCCCEECCCCCEECCHHHHHHHCCCCCCEEEE
T ss_conf 023344389--999--9750887578753466236----99999998679816626751205723233310468866999
Q ss_pred CCCCCCCCC-----CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 576531002-----453432343478875122035899878864111000133221023455575688776898899987
Q 537021.9.peg.7 239 VVSQKDRPR-----VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 (1033)
Q Consensus 239 ~l~~~~~~~-----~~~~~yLks~eEM~~~f~~~peAi~NT~~IAe~c~~~l~~~~~~lP~f~~p~~~~~~~~~~~~Lr~ 313 (1033)
..++..+.. .+...|+++.++|..+|.+.|++++||.+|+++|+.......+.+|.++.|.. |+.
T Consensus 217 ~~~~~s~~~i~~Al~~g~~y~~~~~~m~~~~~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------l~~ 286 (343)
T 3e38_A 217 FAKERSLQGIREALDNRRTAAYFHELLIGREDLLRPFFEKCVKIEEVSRNEQGVTLSITNVTDLVLK----------LKK 286 (343)
T ss_dssp EESSSSHHHHHHHHHTTCEEEEETTEEECCHHHHHHHHHHHEEEEEEEEETTEEEEEEEECSSSCEE----------EEE
T ss_pred ECCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE----------EEC
T ss_conf 8577885459999864776897645654334654999973034654214453135234788874011----------551
Q ss_pred HHHHHHHHCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 65410342012------4643245783899999887789898606305578
Q 537021.9.peg.7 314 KAVAGLEVRLA------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 (1033)
Q Consensus 314 l~~~Gl~~R~~------~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFL 358 (1033)
.+..++.++.. ++.........++.+|++.|++|++..-.+++||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~fevlN~~i~p~~~~ 337 (343)
T 3e38_A 287 TAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIKGGDVNFEVTNFIVAPDKGL 337 (343)
T ss_dssp CSCCTTEECCSEEEECTTEEEEEEEEECTTCCCCEEEEEEEEEEEETTEEE
T ss_pred CCCCCHHHCCCEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCC
T ss_conf 575353224760587478735898850334443431489999657699776
No 5
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=99.74 E-value=6.1e-19 Score=176.83 Aligned_cols=73 Identities=15% Similarity=0.258 Sum_probs=68.4
Q ss_pred CCCCHH--HHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCC
Q ss_conf 988133--433144476443299899999999789988998116517749999999997699638999999854766
Q 537021.9.peg.7 8 SPSFVH--LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82 (1033)
Q Consensus 8 ~~~Fvh--Lh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~ 82 (1033)
.|.|.| ||+||.|| ||..+|+++|++|+++||++|||||||||+|+++|+++|++.|||+|+|+|+++.....
T Consensus 9 ~~~~~~~DLH~HT~yS--DG~~~~eelv~~A~e~G~~~iaITDH~~l~G~~~~~~~a~~~gi~~i~g~E~~~~~~~~ 83 (301)
T 3o0f_A 9 EPPAQGWDIHCHTVFS--DGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVDEDV 83 (301)
T ss_dssp CCCSSSEEEEECCTTT--TCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEETTE
T ss_pred CCCCCCEECCCCCCCC--CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf 8998776478185743--89998999999999889999999789985029999999987499811561333034443
No 6
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, zinc, metallo- enzyme, structure 2 function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=99.43 E-value=1.3e-14 Score=140.24 Aligned_cols=181 Identities=10% Similarity=0.007 Sum_probs=109.6
Q ss_pred CCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC--------CCEEEEEEEEEECCC
Q ss_conf 813343314447644329989999999978998899811651774999999999769--------963899999985476
Q 537021.9.peg.7 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--------IQPIIGCQLDIDMQD 81 (1033)
Q Consensus 10 ~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~g--------IKPIiG~E~~v~~~~ 81 (1033)
.++.|||||.|| .||..+|+++|++|++.|++++|||||++++|..++..++++.+ ++.+.|+|+.+....
T Consensus 2 ~~iDlH~HT~~S-~dg~~~~~e~v~~A~~~G~~~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~ 80 (245)
T 1m65_A 2 YPVDLHMHTVAS-THAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVD 80 (245)
T ss_dssp CCEECCBCCTTS-TTCCCCHHHHHHHHHHHTCCEEEEEEECTTSTTCCCTHHHHGGGGSCSEETTEEEEEEEEEEBCSTT
T ss_pred CCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCH
T ss_conf 861523387988-9866859999999998799999980899853402679999999999997289789743412324642
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 64334456566667753999956968999999999899732487787400---789998634898899819767967888
Q 537021.9.peg.7 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI---CLSWLQEIGTEGLIMLTGGSSGPIDRA 158 (1033)
Q Consensus 82 ~~~~~~~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i---~~~~L~e~~~egLIvlsg~~~g~i~~~ 158 (1033)
... ..+...+.+...++...+ .....|+. ..+.+.+....|.+...+.+....
T Consensus 81 ~~~------------------~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ah~~~~~--- 136 (245)
T 1m65_A 81 GEI------------------DCSGKMFDSLDLIIAGFH---EPVFAPHDKATNTQAMIATIASGNVHIISHPGNPK--- 136 (245)
T ss_dssp CCB------------------SCCHHHHHHCSEEEEECC---TTTSCCCCHHHHHHHHHHHHHTSCCSEECCTTCTT---
T ss_pred HHH------------------HHHHHHHCCCCEEEEEEE---CCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHH---
T ss_conf 566------------------656664225550788750---13568745999999999999679986313645054---
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHH-----HHHHHHHHHHHHHHHCCCEEEECCCCCCCH
Q ss_conf 8779978999999999876598689999439911-----589999999999981898998088300787
Q 537021.9.peg.7 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSE 222 (1033)
Q Consensus 159 l~~~~~~~a~~~l~~l~~~Fgd~~ylEl~~~~~~-----e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~ 222 (1033)
.... ....+..+.+. +.++|+...... +...+..++++++++|+|+|+++|+|++..
T Consensus 137 -~~~~---~~~i~~~~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~SDaH~~~~ 198 (245)
T 1m65_A 137 -YEID---VKAVAEAAAKH---QVALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVALGSDSHTAFT 198 (245)
T ss_dssp -SCCC---HHHHHHHHHHH---TCEEEEETTC----------CHHHHHHHHHHHTCCEEEECCBSSGGG
T ss_pred -HHHH---HHHHHHHHHHH---CCEEEEEEHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf -4545---79999999861---12544300344137777666399999999985994999889899445
No 7
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=99.42 E-value=1.9e-13 Score=130.33 Aligned_cols=207 Identities=14% Similarity=0.035 Sum_probs=107.4
Q ss_pred HHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH----------------------------HHHHH
Q ss_conf 34331444764432998999999997899889981165177499999----------------------------99997
Q 537021.9.peg.7 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------------------------QKACA 64 (1033)
Q Consensus 13 hLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~----------------------------~ackk 64 (1033)
=||+||.||-++++.+|+++|++|++.|++++|||||++++|..++. ..+..
T Consensus 4 DlH~HT~~Sdg~~~~s~eelv~~A~~~Gl~~iaITDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (283)
T 3dcp_A 4 DGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYA 83 (283)
T ss_dssp EEEECCTTCTTSCCCCHHHHHHHHHHTTCCEEEEEEECCCCHHHHHTBCSCTHHHHTTSCCGGGHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 25367598588983879999999998799999984899976604667777762221036658889999999999998636
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC--HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 69963899999985476643344565666677539999569--6899999999989973248778740078999863489
Q 537021.9.peg.7 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST--AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142 (1033)
Q Consensus 65 ~gIKPIiG~E~~v~~~~~~~~~~~~~~~~~~~~~lvlLAkN--~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~e 142 (1033)
.+++++.|+|+.+.....................+++.+.. ..++......++..+.. ..+..++...+.+..+ .+
T Consensus 84 ~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~ 161 (283)
T 3dcp_A 84 SDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNE-GIVQFYGGFEQAQLAY-LE 161 (283)
T ss_dssp TTCEEEEEEEEECCTTCHHHHHHHHHHHGGGCSEEEEECCEEEETTEEEESSSCHHHHHH-HTHHHHTSHHHHHHHH-HH
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCHHHCCHHHHH-HHHHHCCCHHHHHHHH-HH
T ss_conf 896224515774531006678999998623456254102431465443521014399999-9987347438999999-99
Q ss_pred CE------------EEECCC-----CCCHHHHHHHCCCHHHHHHHHHHHHHHC-CCCEEEEEECC----CH-HHHHHHHH
Q ss_conf 88------------998197-----6796788887799789999999998765-98689999439----91-15899999
Q 537021.9.peg.7 143 GL------------IMLTGG-----SSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH----RG-YDRYRESQ 199 (1033)
Q Consensus 143 gL------------Ivlsg~-----~~g~i~~~l~~~~~~~a~~~l~~l~~~F-gd~~ylEl~~~----~~-~e~~~~~~ 199 (1033)
++ ..+.+. ..+...........+.+...+.++.+.+ .+++++|++.. .. .+...+..
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iEvn~~~~~~~~~~e~~~~~~ 241 (283)
T 3dcp_A 162 GVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKK 241 (283)
T ss_dssp HHHHHHHCCCCTTCCSEECCTTGGGTTGGGGTCCGGGCCHHHHHHHHHHHHHHHHHTCEEEEECGGGGSTTCCSCBSCHH
T ss_pred HHHHHHHHHHCCCCCCEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHH
T ss_conf 99999998646788754145689986287521135442355899999999999977948999576566886444453699
Q ss_pred HHHHHHHHCCCEEEECCCCCCC
Q ss_conf 9999998189899808830078
Q 537021.9.peg.7 200 VVQLAYTHELPLVATNNSLFLS 221 (1033)
Q Consensus 200 l~~lA~~~~iPlVaTndv~Y~~ 221 (1033)
++++|+++|+|+++++|+|.++
T Consensus 242 ll~~a~e~gl~~~~gSDaH~~~ 263 (283)
T 3dcp_A 242 IVTLASELQIPFVYGSDSHGVQ 263 (283)
T ss_dssp HHHHHHHTTCCEEEECCBSSGG
T ss_pred HHHHHHHCCCEEEECCCCCCHH
T ss_conf 9999998499899807878865
No 8
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=99.36 E-value=1.1e-13 Score=132.29 Aligned_cols=200 Identities=12% Similarity=0.029 Sum_probs=109.7
Q ss_pred HHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHH---------------HH--HHHHCCCCEEEEEE
Q ss_conf 33433144476443299899999999789988998116517749999---------------99--99976996389999
Q 537021.9.peg.7 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---------------SQ--KACAAGIQPIIGCQ 74 (1033)
Q Consensus 12 vhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F---------------~~--ackk~gIKPIiG~E 74 (1033)
+-|||||.|| .||..+|+++|++|++.|++++|||||+++.+.++. .. ..+..++++++|+|
T Consensus 2 iDlH~HT~~S-~DG~~~~ee~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e 80 (267)
T 2yxo_A 2 VDSHVHTPLC-GHAEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALERVRERAQDLYVGIGLE 80 (267)
T ss_dssp EEEEECCGGG-SSCCSCHHHHHHHHHHTTCSEEEEEEECCCCTTSSGGGSCCGGGHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEECCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 7433478988-985765999999999859999999679886565437665103437999999999998726825873026
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCH-------HHHHHHCCCCEEEE
Q ss_conf 99854766433445656666775399995696899999999989973248778740078-------99986348988998
Q 537021.9.peg.7 75 LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL-------SWLQEIGTEGLIML 147 (1033)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~-------~~L~e~~~egLIvl 147 (1033)
+.+.++.......... .......+.......++...... ...+..++... +.+......+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~v 151 (267)
T 2yxo_A 81 ADFHPGTEGFLAQLLR--RYPFDYVIGSVHYLGAWPLDHPD-------HQEEYAWRDLKEVFRAYFQEVEKAARSGLFHA 151 (267)
T ss_dssp EECCTTCHHHHHHHHH--SSCCSCEEEECCCBTTBCTTCGG-------GGGGGGGSCHHHHHHHHHHHHHHHHTSSCCSE
T ss_pred EEECCCCCHHHHHHHH--HCCHHHHHHHCCCCCCCCCCCHH-------HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 5303331021488886--32446787303543677753146-------77764368899999999999999997799658
Q ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHHH-HCCCCEEEEEECCCHH----HHHHHHHHHHHHHHHCCCEEEECCCCCCCH
Q ss_conf 19767967888877997899999999987-6598689999439911----589999999999981898998088300787
Q 537021.9.peg.7 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRHRGY----DRYRESQVVQLAYTHELPLVATNNSLFLSE 222 (1033)
Q Consensus 148 sg~~~g~i~~~l~~~~~~~a~~~l~~l~~-~Fgd~~ylEl~~~~~~----e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~ 222 (1033)
.++.... .+.......+.......++.+ .+..++++|++.++.. +...+..++++++++|+|+++++|+|++..
T Consensus 152 ~ah~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ein~~~~~~~~~~~~~~~~~~~~a~~~gl~~~~gSDaH~~~~ 230 (267)
T 2yxo_A 152 IGHLDLP-KKFGHRLPEEALLELAEPALRAVAEAGLFLDVNTAGLRRPAKEVYPAPALLRRARELGIGLVLGSDAHRPEE 230 (267)
T ss_dssp ESCTTGG-GTTSCCCCHHHHHHHHHHHHHHHHHHTCEEEEEGGGGGSTTCSCBSCHHHHHHHHHHTCCEEEECCBSSGGG
T ss_pred EECCCHH-HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 5265631-321666777889999999999999539779996640247876555589999999985992999789898789
No 9
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A
Probab=99.15 E-value=3.5e-11 Score=111.23 Aligned_cols=221 Identities=15% Similarity=0.110 Sum_probs=123.5
Q ss_pred CCHHHHHHCHHHHHHHCCCHHH---HHHHHHHCCCCEEEEECCCHHHH-----------HHHHHHHHHHCCCCEEE--EE
Q ss_conf 8133433144476443299899---99999978998899811651774-----------99999999976996389--99
Q 537021.9.peg.7 10 SFVHLQVHSSYSLLEGALSLNN---ILDKIAADQQPAIAITDTNNLFS-----------ALEFSQKACAAGIQPII--GC 73 (1033)
Q Consensus 10 ~FvhLh~hS~ySlldg~~~~e~---LV~~A~~~G~~AiAITD~~nl~G-----------av~F~~ackk~gIKPIi--G~ 73 (1033)
+|+.|||||.||+.||..++++ +|++|++.|++++|||||....+ ..+.....++.+.+..+ |.
T Consensus 4 ~miDlH~Ht~~s~~DG~~s~ee~~~~~~~A~~~G~~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (247)
T 2wje_A 4 GMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGA 83 (247)
T ss_dssp CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEECCCEEBTTTBCCCHHHHHHHHHHHHHHHHHHCTTCEEECCC
T ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 05887676778877898999999999999998799999989899877777868999999999999999737870673030
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCC
Q ss_conf 99985476643344565666677539999569689999999998997324877874007899986348988998197679
Q 537021.9.peg.7 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153 (1033)
Q Consensus 74 E~~v~~~~~~~~~~~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g 153 (1033)
+..+....... ...........+...++-. .+...+....+.+......|.+...+...
T Consensus 84 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~g~~~~laHp~- 142 (247)
T 2wje_A 84 EIYYTPDVLDK-LEKKRIPTLNDSRYALIEF-------------------SMNTPYRDIHSALSKILMLGITPVIAHIE- 142 (247)
T ss_dssp EEECCTHHHHH-HHTTCSCCGGGSSEEEEEC-------------------CTTCCHHHHHHHHHHHHTTTCEEEETTGG-
T ss_pred CEEECCHHHHH-HHHHHHHCCCCEEEEEEEC-------------------CCCCCHHHHHHHHHHHHHCCCCCCCCCCC-
T ss_conf 00103112443-0035550579839999967-------------------88776567899999999689966415663-
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-------HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHH
Q ss_conf 6788887799789999999998765986899994399-------115899999999999818989980883007878899
Q 537021.9.peg.7 154 PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 (1033)
Q Consensus 154 ~i~~~l~~~~~~~a~~~l~~l~~~Fgd~~ylEl~~~~-------~~e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~ 226 (1033)
+...... ..+.+.. +...+.++|+.... +.-......+++.+.+.|+|+++++|+|.++..++.
T Consensus 143 ---r~~~~~~---~~~~~~~---~~~~~~~~ein~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~i~igSDAH~~~~~~~~ 213 (247)
T 2wje_A 143 ---RYDALEN---NEKRVRE---LIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDGRPPH 213 (247)
T ss_dssp ---GCGGGTT---CHHHHHH---HHHTTCEEEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSEEECCBCCSSSSCCC
T ss_pred ---CHHHHHH---CHHHHHH---HHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH
T ss_conf ---0666652---6888999---986897588642443334567774599999999999789909998589984346816
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 998766884698576531002453432343478875122035899878864
Q 537021.9.peg.7 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 (1033)
Q Consensus 227 ~h~iL~aI~~~~~l~~~~~~~~~~~~yLks~eEM~~~f~~~peAi~NT~~I 277 (1033)
..+++.++... ...+++.++|.+-|++|-|+..|
T Consensus 214 ~~~a~~~l~~~-----------------~g~~~~~~~~~~np~~i~~~~~i 247 (247)
T 2wje_A 214 MAEAYDLVTQK-----------------YGEAKAQELFIDNPRKIVMDQLI 247 (247)
T ss_dssp HHHHHHHHHHH-----------------HCHHHHHHHHTHHHHHHHTTCCC
T ss_pred HHHHHHHHHHH-----------------CCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999987-----------------39999999999849999776919
No 10
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP family), structural genomics; 2.40A {Thermotoga maritima MSB8} SCOP: c.6.3.1
Probab=98.81 E-value=2.7e-08 Score=86.86 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=93.4
Q ss_pred CCCCCC--CHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH---------------------
Q ss_conf 668988--133433144476443299899999999789988998116517749999999---------------------
Q 537021.9.peg.7 5 LEKSPS--FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------------------- 61 (1033)
Q Consensus 5 ~~~~~~--FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~a--------------------- 61 (1033)
|..... ++-||+||.|| ||..+|+++|++|++.|++++|||||+++.+..++...
T Consensus 13 ~~~~~~w~~aDLH~Hs~~S--Dg~~~~~e~v~~A~~~Gld~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (255)
T 2anu_A 13 MKTDTEWLLCDFHVHTNMS--DGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLW 90 (255)
T ss_dssp ----CEEEEEEEEECCTTT--TCSSCHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHTTCCCCSCCSTTHHHHHHHHH
T ss_pred CCCCCCEEEEEEEECCCCC--CCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 1048987857703786864--89899999999999859978999347861326888752121133212104668888899
Q ss_pred ------HHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf ------99769963899999985476643344565666677539999569689999999998997324877874007899
Q 537021.9.peg.7 62 ------ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 (1033)
Q Consensus 62 ------ckk~gIKPIiG~E~~v~~~~~~~~~~~~~~~~~~~~~lvlLAkN~~Gy~nL~kL~S~a~~~~~~~~~p~i~~~~ 135 (1033)
....++..+.|.|...... ...+++.+..++. .+..+...
T Consensus 91 ~~~~~~~~~~~~~~~~g~e~~~~~~-----------------~~~~~~~~~~~~~-----------------~~~~~~~~ 136 (255)
T 2anu_A 91 REQKRAWEEYGMILIPGVEITNNTD-----------------LYHIVAVDVKEYV-----------------DPSLPVEE 136 (255)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEETTT-----------------TEEEEEESCCSCC-----------------CTTSCHHH
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCC-----------------CEEEEECCCCCCC-----------------CCCCCHHH
T ss_conf 9999998654743147703114456-----------------3157404763457-----------------87666568
Q ss_pred H-HHH-CCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9-863-489889981976796788887799789999999998765986-8999943991158999999999998189899
Q 537021.9.peg.7 136 L-QEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212 (1033)
Q Consensus 136 L-~e~-~~egLIvlsg~~~g~i~~~l~~~~~~~a~~~l~~l~~~Fgd~-~ylEl~~~~~~e~~~~~~l~~lA~~~~iPlV 212 (1033)
+ ... ..++++++-. +............. .......+... --+|+.... .+..+++..++|+|
T Consensus 137 ~~~~~~~~g~~~i~aH-p~~~~~~~~~~~~~------~~~~~~~~~~~~d~iE~~n~~--------~~~~~~~~~~~~~v 201 (255)
T 2anu_A 137 IVEKLKEQNALVIAAH-PDRKKQDEEHLSWY------LWANMERFKDTFDAWEIANRD--------DLFNSVGVKKYRYV 201 (255)
T ss_dssp HHHHHHHTTCEEEECC-CCTTC-----CCCH------HHHSTTTTTTTCSEEEEEETT--------EECHHHHHTTCCEE
T ss_pred HHHHHHHCCCEEEECC-HHHCCCCCHHHHHH------HHHHHHHHHCCCEEEEECCHH--------HHHHHHHHCCCCEE
T ss_conf 9999997799788658-10002660112343------677787664275099971779--------99999886099879
Q ss_pred EECCCCCCC
Q ss_conf 808830078
Q 537021.9.peg.7 213 ATNNSLFLS 221 (1033)
Q Consensus 213 aTndv~Y~~ 221 (1033)
+++|.|++.
T Consensus 202 ~gSDaH~~~ 210 (255)
T 2anu_A 202 ANSDFHELW 210 (255)
T ss_dssp EECCBCSGG
T ss_pred EECCCCCCC
T ss_conf 768988841
No 11
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=98.71 E-value=1.9e-07 Score=79.61 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89998888636850355233421
Q 537021.9.peg.7 803 KKFCQDARQFNIQIMPPSVNTPC 825 (1033)
Q Consensus 803 ~~~i~e~~~~gi~vl~PdIN~S~ 825 (1033)
..+++.|++.|+.+ .||.|.
T Consensus 473 e~v~~~~~~~g~~l---EINts~ 492 (578)
T 2w9m_A 473 DAVLGACEANGTVV---EINANA 492 (578)
T ss_dssp HHHHHHHHHHTCEE---EEECST
T ss_pred HHHHHHHHHHCCEE---EEECCC
T ss_conf 99999999819999---994999
No 12
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=96.46 E-value=0.0016 Score=46.51 Aligned_cols=51 Identities=25% Similarity=0.430 Sum_probs=43.6
Q ss_pred EHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCC
Q ss_conf 02685896989999999998-3799999789997348247998999988867672
Q 537021.9.peg.7 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 (1033)
Q Consensus 838 Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df~~rv~~~~~nk~~le~Li~aGAf 891 (1033)
=|..++|||.+.++.||+.| ++|||.|++|+.. | ++++.+.++.+.+++.+
T Consensus 41 eL~~lpgIg~~~A~~Iv~~R~~~G~f~sledL~~-v--~Gi~~k~~eki~k~~~L 92 (98)
T 2edu_A 41 DLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER-V--EGITGKQMESFLKANIL 92 (98)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG-S--TTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHC-C--CCCCHHHHHHHHHCCCE
T ss_conf 9964799899999999999998599288999844-8--99899999999983875
No 13
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=95.57 E-value=0.0078 Score=40.62 Aligned_cols=36 Identities=36% Similarity=0.659 Sum_probs=33.3
Q ss_pred EHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf 026858969899999999983799999789997348
Q 537021.9.peg.7 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873 (1033)
Q Consensus 838 Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~ 873 (1033)
.|.-+.|||.+.+..|+++|+.+||+||+|+-.||.
T Consensus 133 ~leLLPGIGKK~~~~IleeR~k~~FeSFedi~~Rv~ 168 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVK 168 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHST
T ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC
T ss_conf 887523505899999999965589889999998844
No 14
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.13 E-value=0.043 Score=34.40 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=40.5
Q ss_pred HHHHHCCCCCCEEEEEEEEEEE---EEECCCCCC--EEEEEEEECCCCEEEEEEC
Q ss_conf 8898505589889999999611---210158887--6999999849704999953
Q 537021.9.peg.7 983 YEESVATIRGNNIRLAAMVVSK---QQKKTRKGS--RIGWVTFSEPAKEYEANFF 1032 (1033)
Q Consensus 983 ~~~~~~~~~g~~v~iaG~V~~i---~~~~TKkG~--~mafltleD~~g~~e~~iF 1032 (1033)
+..+.++..|..+.|.|.|+++ ++..+|+|+ .+.-++|.|.||.+.+++|
T Consensus 7 i~~I~~l~~g~~v~v~g~V~~~~~~r~~~~k~G~~~~~~~i~l~D~TG~I~vt~W 61 (115)
T 2k50_A 7 MDTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFW 61 (115)
T ss_dssp CCCTTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEE
T ss_pred CCCHHHCCCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCEEEEEEE
T ss_conf 4668677899876799999985697689917998968999999849997999995
No 15
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=93.59 E-value=0.064 Score=32.91 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 523342100353198698502685896989999999998379999978999734824799899998886
Q 537021.9.peg.7 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 (1033)
Q Consensus 819 PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li~ 887 (1033)
.|||.... --|..++|||...++.||+ +|||+|++|+.. .++++.+++|.|-.
T Consensus 55 idlN~A~~----------~eL~~lpGig~~~A~~Iv~---~gpf~svedl~~---v~Gig~~~~e~l~~ 107 (134)
T 1s5l_U 55 IDLNNTNI----------AAFIQYRGLYPTLAKLIVK---NAPYESVEDVLN---IPGLTERQKQILRE 107 (134)
T ss_dssp EETTTSCG----------GGGGGSTTCTHHHHHHHHH---TCCCSSGGGGGG---CTTCCHHHHHHHHH
T ss_pred EECCCCCH----------HHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHC---CCCCCHHHHHHHHH
T ss_conf 41640789----------9997710346999999998---278487999961---77579999999998
No 16
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=93.44 E-value=0.16 Score=29.44 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=9.0
Q ss_pred CCHHHHEECCCCC
Q ss_conf 6666620012367
Q 537021.9.peg.7 537 RPLSQLVPMYRDV 549 (1033)
Q Consensus 537 ~~l~~~~p~~~~~ 549 (1033)
+.+.++.|..++.
T Consensus 311 ~rVfeI~~~FR~E 323 (548)
T 3i7f_A 311 RKVFEVGPVFRAE 323 (548)
T ss_dssp CEEEEEEEECCCS
T ss_pred CCCCCCCEEEECC
T ss_conf 3234434056645
No 17
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=93.44 E-value=0.24 Score=28.06 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHCCCCCCEEEEEEEEEEEEE---ECCCCCCE--EEEEEEECCCCEEEEEEC
Q ss_conf 850558988999999961121---01588876--999999849704999953
Q 537021.9.peg.7 986 SVATIRGNNIRLAAMVVSKQQ---KKTRKGSR--IGWVTFSEPAKEYEANFF 1032 (1033)
Q Consensus 986 ~~~~~~g~~v~iaG~V~~i~~---~~TKkG~~--mafltleD~~g~~e~~iF 1032 (1033)
+.++..|..+.+.|.|+++.. ..+|.|.+ +.-+.+.|.||.+.+++|
T Consensus 5 I~~L~~g~~v~i~g~V~~~~~~r~~~~k~g~~~~v~~~~i~D~TG~i~~~~W 56 (97)
T 3e0e_A 5 ISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLW 56 (97)
T ss_dssp GGGCCTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEE
T ss_pred HHHCCCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEE
T ss_conf 8998999838899999981475798847997308999999849980999996
No 18
>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U*
Probab=93.32 E-value=0.066 Score=32.82 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=41.7
Q ss_pred CCCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 5523342100353198698502685896989999999998379999978999734824799899998886
Q 537021.9.peg.7 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 (1033)
Q Consensus 818 ~PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li~ 887 (1033)
+.|||... ..-|..|+|||...+++||+ +|||+|++|+... +++..+.++.+-.
T Consensus 24 kidlN~As----------~~eL~~lpGig~~~A~~Iv~---~gpf~s~~dL~~V---~Gig~~~~e~ik~ 77 (104)
T 3bz1_U 24 KIDLNNTN----------IAAFIQYRGLYPTLAKLIVK---NAPYESVEDVLNI---PGLTERQKQILRE 77 (104)
T ss_dssp BEETTSSC----------GGGGGGSTTTTHHHHHHHHH---SCCCSSGGGGGGC---TTCCHHHHHHHHH
T ss_pred CEECCCCC----------HHHHHHCCCCCHHHHHHHHH---CCCCCCHHHHHCC---CCCCHHHHHHHHH
T ss_conf 35784089----------99996589979999999997---4997989999638---9989999999998
No 19
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=93.29 E-value=0.17 Score=29.26 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHCCCCCCEEEEEEEEEEEEE---ECCCCCCE--EEEEEEECCCCEEEEEEC
Q ss_conf 9850558988999999961121---01588876--999999849704999953
Q 537021.9.peg.7 985 ESVATIRGNNIRLAAMVVSKQQ---KKTRKGSR--IGWVTFSEPAKEYEANFF 1032 (1033)
Q Consensus 985 ~~~~~~~g~~v~iaG~V~~i~~---~~TKkG~~--mafltleD~~g~~e~~iF 1032 (1033)
++.++..|..+.+.|.|+++.. ..+++|.. ++-+.+.|.||.+.+++|
T Consensus 7 ~I~~L~~g~~v~v~g~V~~~~~~r~~~~~~G~~~~~~~~~i~D~tg~i~~t~W 59 (105)
T 3dm3_A 7 NIGELSPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLW 59 (105)
T ss_dssp CGGGCCSSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEE
T ss_pred CHHHCCCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEE
T ss_conf 08798999878999999992587798858998889999999929993999997
No 20
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=92.86 E-value=0.32 Score=27.02 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=6.4
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 53432343478875
Q 537021.9.peg.7 249 TPDHYLKNRSEMVS 262 (1033)
Q Consensus 249 ~~~~yLks~eEM~~ 262 (1033)
+...||.++.|+..
T Consensus 201 ~~~~~L~~spql~k 214 (456)
T 3m4p_A 201 NEPAYLTQSSQLYL 214 (456)
T ss_dssp TEEEEECSCCHHHH
T ss_pred CHHHHCCCCHHHHH
T ss_conf 11132038788751
No 21
>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=92.75 E-value=0.35 Score=26.67 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=13.7
Q ss_pred CCHHHHEECCCCCCCC-CEEEEEECHHHHH
Q ss_conf 6666620012367688-6688510213343
Q 537021.9.peg.7 537 RPLSQLVPMYRDVRSD-LPVTQFNMKWIEK 565 (1033)
Q Consensus 537 ~~l~~~~p~~~~~~~~-~~~~q~d~~~~e~ 565 (1033)
+.+.++.|..++-..+ .-.+.|.|=++|.
T Consensus 252 ~rvfei~~~FR~E~~~trH~~EFt~le~e~ 281 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISVRHNPEFTMMELYM 281 (504)
T ss_dssp CEEEEEEEEECCCCCCC-CCSEEEEEEEEE
T ss_pred CHHEEECCEECCCCCCCCCCCCEEEEEEEE
T ss_conf 122255301547767766896355533100
No 22
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=91.48 E-value=0.54 Score=25.08 Aligned_cols=12 Identities=8% Similarity=0.379 Sum_probs=6.5
Q ss_pred CCHHHHEECCCC
Q ss_conf 666662001236
Q 537021.9.peg.7 537 RPLSQLVPMYRD 548 (1033)
Q Consensus 537 ~~l~~~~p~~~~ 548 (1033)
+.+.++.|..++
T Consensus 243 ~rvfqI~~~FR~ 254 (493)
T 3a74_A 243 EKVYEIGRVFRN 254 (493)
T ss_dssp CEEEEEEEEECC
T ss_pred CCEEEEECEECC
T ss_conf 547897000357
No 23
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} SCOP: a.60.2.7
Probab=91.16 E-value=0.1 Score=31.26 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=42.1
Q ss_pred CCCCCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 03552334210035319869850268589698999999999837999997899973482479989999888
Q 537021.9.peg.7 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 (1033)
Q Consensus 816 vl~PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li 886 (1033)
.-|-|||..... -|..++|||...++.|++.| ||+|++||... ++++.+.++.+-
T Consensus 16 ~~~idiN~As~~----------eL~~lpGig~~~A~~Iv~~R---~f~s~~dL~~v---~gi~~~~~~~i~ 70 (75)
T 2duy_A 16 QTPVSLNEASLE----------ELMALPGIGPVLARRIVEGR---PYARVEDLLKV---KGIGPATLERLR 70 (75)
T ss_dssp GCSEETTTCCHH----------HHTTSTTCCHHHHHHHHHTC---CCSSGGGGGGS---TTCCHHHHHHHG
T ss_pred CCCEECCCCCHH----------HHHHCCCCCHHHHHHHHHCC---CCCCHHHHHHC---CCCCHHHHHHHH
T ss_conf 787007128799----------99777898999999999858---98989999757---898999999999
No 24
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=90.97 E-value=0.77 Score=23.80 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=6.8
Q ss_pred CCHHHHEECCCC
Q ss_conf 666662001236
Q 537021.9.peg.7 537 RPLSQLVPMYRD 548 (1033)
Q Consensus 537 ~~l~~~~p~~~~ 548 (1033)
+.+.++.|..++
T Consensus 245 ~rVfeIg~~FRa 256 (521)
T 3bju_A 245 DRVYEIGRQFRN 256 (521)
T ss_dssp CEEEEEEEEECC
T ss_pred CCCEEEHHHHCC
T ss_conf 302011334137
No 25
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=90.88 E-value=0.63 Score=24.51 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=30.5
Q ss_pred CCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCC-EEEEEEC
Q ss_conf 9889999999611210158887699999984970-4999953
Q 537021.9.peg.7 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032 (1033)
Q Consensus 992 g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g-~~e~~iF 1032 (1033)
-+.|++.|.|++++++.+ ..+++++|.|| .+++.+|
T Consensus 47 I~~V~ivG~Vvsv~~~~~-----~~~y~IDDgTG~~I~~~~w 83 (159)
T 3kf6_A 47 IRWIQIVGYIAAIDIYEG-----KHVLTVDDCSGMVLRVVFI 83 (159)
T ss_dssp ECEEEEEEEEEEEEEETT-----EEEEEEECSSSCEEEEEEE
T ss_pred EEEEEEEEEEEEEEEECC-----EEEEEEECCCCCCEEEEEE
T ss_conf 899999999999999456-----6999998899991799998
No 26
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, nucleus, zinc, zinc-finger; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=88.99 E-value=1.1 Score=22.61 Aligned_cols=41 Identities=7% Similarity=0.146 Sum_probs=20.9
Q ss_pred CCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCC---EEEEEEC
Q ss_conf 9889999999611210158887699999984970---4999953
Q 537021.9.peg.7 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK---EYEANFF 1032 (1033)
Q Consensus 992 g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g---~~e~~iF 1032 (1033)
+.+|.++.++.....+.+++|+++.+.++.|..+ .+++.+|
T Consensus 56 ~dwv~~Gvv~~Ks~pk~s~~gk~y~~w~l~dL~~~~~~v~lfLF 99 (200)
T 3ebe_A 56 EDWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLF 99 (200)
T ss_dssp SCEEEEEEEEEEECC-------CCEEEEEECSSSTTCCEEEEEC
T ss_pred CCEEEEEEEEECCCCEECCCCCCEEEEEEECCCCCCEEEEEEEE
T ss_conf 98899999996377207469970899998617898618999984
No 27
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A*
Probab=87.64 E-value=1.2 Score=22.09 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHCCCCEEEEE---------------CCCHHHH------HHHHHHHHHHCCCCEE
Q ss_conf 998999999997899889981---------------1651774------9999999997699638
Q 537021.9.peg.7 27 LSLNNILDKIAADQQPAIAIT---------------DTNNLFS------ALEFSQKACAAGIQPI 70 (1033)
Q Consensus 27 ~~~e~LV~~A~~~G~~AiAIT---------------D~~nl~G------av~F~~ackk~gIKPI 70 (1033)
..+++.|+.|++.||+.+.|| |+|.+.. +-++..||+++|||.-
T Consensus 105 fda~~W~~~ak~AGaky~vlTaKHHDGF~lwdSk~t~~n~~~~~~krDiv~el~~A~rk~Glk~G 169 (455)
T 2zxd_A 105 WDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFG 169 (455)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 89999999999849976997677337742368999998776889897379999999986698489
No 28
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=87.14 E-value=1.3 Score=21.75 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHCCCCCC-EEEEEEEEEEEE---EECCCCCC-EEEEEEEECCCCEEEEEECC
Q ss_conf 85055898-899999996112---10158887-69999998497049999539
Q 537021.9.peg.7 986 SVATIRGN-NIRLAAMVVSKQ---QKKTRKGS-RIGWVTFSEPAKEYEANFFP 1033 (1033)
Q Consensus 986 ~~~~~~g~-~v~iaG~V~~i~---~~~TKkG~-~mafltleD~~g~~e~~iFP 1033 (1033)
+.++..|. .+.+.|.|+++. +..+|.|. .++.+.+.|+||.+.+++|.
T Consensus 5 I~dL~p~~~~v~i~~~V~~~~~~r~~~~k~g~~~v~~~~i~D~TG~i~~tlW~ 57 (119)
T 1o7i_A 5 VGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWG 57 (119)
T ss_dssp GGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEG
T ss_pred HHHCCCCCCCEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCEEEEEEEC
T ss_conf 77689999878999999988787168738998899999998699879998805
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.92 E-value=0.37 Score=26.49 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=15.8
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 6777510023542025899988886368503
Q 537021.9.peg.7 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 (1033)
Q Consensus 787 F~aa~L~~~~~~~~~~~~~i~e~~~~gi~vl 817 (1033)
+-.+++...+.. +.....+++-++-.+.||
T Consensus 614 ~~V~~lHG~m~~-~eR~~im~~Fr~Gk~~IL 643 (780)
T 1gm5_A 614 FKLGLMHGRLSQ-EEKDRVMLEFAEGRYDIL 643 (780)
T ss_dssp -CBCCCCSSSCC-SCSHHHHHHHTTTSSSBC
T ss_pred CEEEEEECCCCH-HHHHHHHHHHHCCCCCEE
T ss_conf 559998278999-999999999985999999
No 30
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=86.16 E-value=1.5 Score=21.36 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=30.2
Q ss_pred CCCCCEEEEEEEEEEEEEECCC---CCCEEEEEEEECCCC---EEEEEE
Q ss_conf 5589889999999611210158---887699999984970---499995
Q 537021.9.peg.7 989 TIRGNNIRLAAMVVSKQQKKTR---KGSRIGWVTFSEPAK---EYEANF 1031 (1033)
Q Consensus 989 ~~~g~~v~iaG~V~~i~~~~TK---kG~~mafltleD~~g---~~e~~i 1031 (1033)
...-++|+|.|.|+.++.+.-. .++.+.|+|+.|.+| .+.+-+
T Consensus 82 N~PI~~VrIvG~VVg~~yk~~~~~~~~~~y~iltIDDsSG~~s~i~vk~ 130 (220)
T 3kf8_A 82 NYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRL 130 (220)
T ss_dssp TEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEE
T ss_pred CCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEE
T ss_conf 7651899999999999984265566665349999956999946899995
No 31
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=84.27 E-value=1.8 Score=20.71 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=38.7
Q ss_pred HCCCHHHHHHHHHHCCCCEEEEE---------------CCCHHH----H-----HHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 32998999999997899889981---------------165177----4-----999999999769963899999985
Q 537021.9.peg.7 25 GALSLNNILDKIAADQQPAIAIT---------------DTNNLF----S-----ALEFSQKACAAGIQPIIGCQLDID 78 (1033)
Q Consensus 25 g~~~~e~LV~~A~~~G~~AiAIT---------------D~~nl~----G-----av~F~~ackk~gIKPIiG~E~~v~ 78 (1033)
....+++.|+.|++.|++.+.+| |++... | +-++.+||+++|||. | +|+.
T Consensus 57 ~~fD~~qWv~~~k~aGakyvvltaKHHDGF~lW~S~~t~~~v~~s~~~~~krDiv~el~~A~rk~Glk~--G--~Y~S 130 (443)
T 3gza_A 57 TELNTDQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQP--G--IYIG 130 (443)
T ss_dssp TTCCHHHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEE--E--EEEC
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE--E--EEEE
T ss_conf 428999999999986996899854536886673799999765556564888687999999998709846--9--9984
No 32
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=84.12 E-value=0.73 Score=23.96 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHHHH-HCCCCCCHHHHHHHCCCCCCC
Q ss_conf 0258999888863685035523342100353198698502685896989999999998-379999978999734824799
Q 537021.9.peg.7 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878 (1033)
Q Consensus 800 ~~~~~~i~e~~~~gi~vl~PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r-~~g~f~sl~df~~rv~~~~~n 878 (1033)
+.+..-+..+-..-+.-.+.|||.... --|..|-|+|...+..|++.| +||+|.|-.++.. + ..++
T Consensus 481 ~~L~~~L~~vv~~~VN~VGVDiN~As~----------~lL~~VsGLgprkA~~iv~~r~~~g~f~~R~~L~~-v--~~lG 547 (785)
T 3bzc_A 481 LKLARSLDAVVEDCVNAVGVDVNTASA----------ALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK-V--SRLG 547 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHCEETTTCCH----------HHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG-S--TTCC
T ss_pred HHHHHHHHHHHHHHHHCCCEEHHHHHH----------HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH-C--CCCC
T ss_conf 999999999999784045561886147----------77532578788999999999995799577999973-6--7866
Q ss_pred HHHHHHH
Q ss_conf 8999988
Q 537021.9.peg.7 879 RRVLESL 885 (1033)
Q Consensus 879 k~~le~L 885 (1033)
.+.++..
T Consensus 548 ~k~F~q~ 554 (785)
T 3bzc_A 548 EKTFEQA 554 (785)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 0217652
No 33
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=82.46 E-value=2.1 Score=20.17 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=12.5
Q ss_pred CCCCEEEECCCCHHHHEECCCCCCCC--CEEEEE
Q ss_conf 47440335256666620012367688--668851
Q 537021.9.peg.7 527 THAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQF 558 (1033)
Q Consensus 527 ~Ha~Gvvi~~~~l~~~~p~~~~~~~~--~~~~q~ 558 (1033)
+.-.|+|.+-+.-...+-.......| +.+.+|
T Consensus 74 V~iVG~V~~v~~~~t~~~y~idDgTG~~i~~~~w 107 (270)
T 2pi2_A 74 VTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQW 107 (270)
T ss_dssp EEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEE
T ss_pred EEEEEEEEEEEECCCEEEEEEECCCCCCEEEEEE
T ss_conf 9999999688856867899998799882799996
No 34
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B
Probab=82.32 E-value=2.1 Score=20.13 Aligned_cols=37 Identities=3% Similarity=0.037 Sum_probs=29.2
Q ss_pred CCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCC-EEEEEECC
Q ss_conf 9889999999611210158887699999984970-49999539
Q 537021.9.peg.7 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFFP 1033 (1033)
Q Consensus 992 g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g-~~e~~iFP 1033 (1033)
-..|++.|.|.++....| ....+++|.|| .+++..|.
T Consensus 31 v~~V~iVG~V~~v~~~~t-----~~~y~IdDgTG~~i~v~~w~ 68 (132)
T 3kdf_D 31 ISQVTIVGIIRHAEKAPT-----NIVYKIDDMTAAPMDVRQWV 68 (132)
T ss_dssp CCEEEEEEEEEEEEECSS-----EEEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEEEEEEEEEECCC-----EEEEEEECCCCCCEEEEEEC
T ss_conf 999999999999998797-----89999988999948999977
No 35
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=82.17 E-value=2.1 Score=20.09 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCEEEEEEEEEEEEEEC-CCCCCE--EEEEEEECCCCEEEEEEC
Q ss_conf 98899999996112101-588876--999999849704999953
Q 537021.9.peg.7 992 GNNIRLAAMVVSKQQKK-TRKGSR--IGWVTFSEPAKEYEANFF 1032 (1033)
Q Consensus 992 g~~v~iaG~V~~i~~~~-TKkG~~--mafltleD~~g~~e~~iF 1032 (1033)
...|.+.|.|+++..+. +|+|.. ++-+.+.|+||.+.+++|
T Consensus 13 ~~~V~i~gkV~~i~~r~~~kdG~~~~v~~~~i~D~TG~ir~t~W 56 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSF 56 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEE
T ss_pred CCCEEEEEEEEEECCCEEEECCCEEEEEEEEEECCCCEEEEEEE
T ss_conf 99579999995953678996997689999999889978999996
No 36
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=80.18 E-value=2.4 Score=19.57 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHCCCCEEEEE---------------CCCHHH----H-----HHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 2998999999997899889981---------------165177----4-----9999999997699638999999854
Q 537021.9.peg.7 26 ALSLNNILDKIAADQQPAIAIT---------------DTNNLF----S-----ALEFSQKACAAGIQPIIGCQLDIDM 79 (1033)
Q Consensus 26 ~~~~e~LV~~A~~~G~~AiAIT---------------D~~nl~----G-----av~F~~ackk~gIKPIiG~E~~v~~ 79 (1033)
...|++.|+.|++.||+-+.|| |++... | +-+|.+||+++|||.- +|+..
T Consensus 53 ~fd~~~W~~~~k~aGaky~vltakHHDGF~lw~S~~t~~~~~~s~~~g~krDlv~el~~A~rk~Glk~G----~Y~S~ 126 (469)
T 3eyp_A 53 ALDCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAG----IYLGP 126 (469)
T ss_dssp SCCHHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEE----EEECS
T ss_pred CCCHHHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEE----EEECC
T ss_conf 089999999999869968996521057566778999987654578778864499999999986197369----98152
No 37
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=79.96 E-value=2.3 Score=19.81 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=39.0
Q ss_pred CHHHHHHHCCCHHHHHHHHHHCCCCEEEEEC-C-C-----HHHHHHHHHHHHHHCCCCE
Q ss_conf 4447644329989999999978998899811-6-5-----1774999999999769963
Q 537021.9.peg.7 18 SSYSLLEGALSLNNILDKIAADQQPAIAITD-T-N-----NLFSALEFSQKACAAGIQP 69 (1033)
Q Consensus 18 S~ySlldg~~~~e~LV~~A~~~G~~AiAITD-~-~-----nl~Gav~F~~ackk~gIKP 69 (1033)
+.+||.....+++++++.|++.|+.+|-|.- + . .....-++..+++++||+.
T Consensus 6 ~t~sf~~~~~sl~e~l~~a~~~G~~gIEl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i 64 (286)
T 3dx5_A 6 CTISFRHQLISFTDIVQFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDKTLEI 64 (286)
T ss_dssp EGGGGTTSCCCHHHHHHHHHHTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHTGGGTCCE
T ss_pred EEHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 62874368989999999999819999998255665345458788999999999659979
No 38
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=78.91 E-value=2.6 Score=19.28 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHCCCCEEEEE---------------CCCHHHH------HHHHHHHHHHCCCCEE
Q ss_conf 2998999999997899889981---------------1651774------9999999997699638
Q 537021.9.peg.7 26 ALSLNNILDKIAADQQPAIAIT---------------DTNNLFS------ALEFSQKACAAGIQPI 70 (1033)
Q Consensus 26 ~~~~e~LV~~A~~~G~~AiAIT---------------D~~nl~G------av~F~~ackk~gIKPI 70 (1033)
...+++.|+.|++.|++-+.+| |+|.+.. +-+|.+||+++|||.-
T Consensus 77 ~fd~~~W~~l~k~aGakY~v~takHHDGF~lwdS~~t~~n~~~~~~krDiv~el~~A~r~~Glk~g 142 (450)
T 2wvv_A 77 KFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVH 142 (450)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 599999999999859967997677337753446889997333688777708999999984387404
No 39
>3mo4_A Alpha-1,3/4-fucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: TYR; 1.90A {Bifidobacterium longum subsp}
Probab=76.05 E-value=3.1 Score=18.67 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHCCCCEEEEE---------------CCCHHHH---------HHHHHHHHHHCCCCEEE
Q ss_conf 998999999997899889981---------------1651774---------99999999976996389
Q 537021.9.peg.7 27 LSLNNILDKIAADQQPAIAIT---------------DTNNLFS---------ALEFSQKACAAGIQPII 71 (1033)
Q Consensus 27 ~~~e~LV~~A~~~G~~AiAIT---------------D~~nl~G---------av~F~~ackk~gIKPIi 71 (1033)
..+++.|+.|++.||+.+.|| |++...+ +-+|.+||+++|||..+
T Consensus 64 fDad~W~~~~k~AGakY~vltaKHHDGF~lW~S~~t~~~v~~sp~~~~krDiv~el~~A~rk~Glk~G~ 132 (480)
T 3mo4_A 64 VDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGV 132 (480)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 899999999998599489981572786557379999986435776688867899999999871971478
No 40
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=75.48 E-value=3.2 Score=18.56 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCCCEEEEEEEEEEEEEEC-CCCC--CEEEEEEEECCCC-----EEEEEEC
Q ss_conf 5898899999996112101-5888--7699999984970-----4999953
Q 537021.9.peg.7 990 IRGNNIRLAAMVVSKQQKK-TRKG--SRIGWVTFSEPAK-----EYEANFF 1032 (1033)
Q Consensus 990 ~~g~~v~iaG~V~~i~~~~-TKkG--~~mafltleD~~g-----~~e~~iF 1032 (1033)
+.++.|.++|+|+....++ ||+| +-+..++|-|.+- .+.+.+|
T Consensus 40 k~n~~VNviGVV~~~~~P~~Sk~G~kDy~~tl~I~D~S~~~~~~gL~v~iF 90 (187)
T 1qzg_A 40 KKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLF 90 (187)
T ss_dssp SSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEE
T ss_pred HCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEE
T ss_conf 159888899998003697027789986799999985998888886799998
No 41
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=73.50 E-value=3.5 Score=18.19 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEE------E-CCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8133433144476443299899999999789988998------1-165177499999999976996389999
Q 537021.9.peg.7 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI------T-DTNNLFSALEFSQKACAAGIQPIIGCQ 74 (1033)
Q Consensus 10 ~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAI------T-D~~nl~Gav~F~~ackk~gIKPIiG~E 74 (1033)
+++.+-..+.+.+.+.-...+++.+.-++.|+.+|=| + +.+++.-+-+..+.|+++|+|.|+.+.
T Consensus 10 ~~~~~~~~~g~~~~~~~g~~~d~~~~l~~aG~n~VRi~vW~~p~~~~~~~~~v~~~v~~A~~~gl~vil~lh 81 (332)
T 1hjs_A 10 SSVVVEERAGVSYKNTNGNAQPLENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGLGVYIDFH 81 (332)
T ss_dssp TTHHHHHHTTCCCBCTTSCBCCHHHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 678999968966788999814399999977999799501107998867899999999999988997999715
No 42
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical structural genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=72.25 E-value=1.5 Score=21.29 Aligned_cols=20 Identities=5% Similarity=-0.064 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHHCCCC
Q ss_conf 30557888999998510476
Q 537021.9.peg.7 353 FSGYFLIVADFIQWAKKNNI 372 (1033)
Q Consensus 353 f~~YFLiV~Div~~ak~~gI 372 (1033)
++++.-++++++.-+..+|+
T Consensus 110 ~e~~~~~a~~~~~~~~~dgV 129 (371)
T 2pgf_A 110 YEVIEDLAKHAVFNKYKEGV 129 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999998597
No 43
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=71.59 E-value=3 Score=18.81 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 898899987654103420124643245783899999887789898606305578--889999985104764334444204
Q 537021.9.peg.7 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL--IVADFIQWAKKNNIPVGPGRGSGA 382 (1033)
Q Consensus 305 ~~~~~~Lr~l~~~Gl~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~YFL--iV~Div~~ak~~gI~vGpGRGSAa 382 (1033)
+.+++.+++.+..=+.+-+..+ ..++. ...+.+++-+..|+ +|..++..+-+++= -.=..+
T Consensus 5 ~~S~Ee~~kk~~~il~Ey~~~~------D~~Ea-------~~~l~el~~p~~~~~~~V~~~i~~aler~~----~~Re~~ 67 (364)
T 3l6a_A 5 HHSKEELLKLTETVVTEYLNSG------NANEA-------VNGVREMRAPKHFLPEMLSKVIILSLDRSD----EDKEKA 67 (364)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHC------CHHHH-------HHHHHHHTCCGGGHHHHHHHHHHHHHTSCH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCC------CHHHH-------HHHHHHHCCCHHHHHHHHHHHHHHHHCCCH----HHHHHH
T ss_conf 6999999999999999998589------99999-------999998488275799999999999972889----999999
Q ss_pred HHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCH
Q ss_conf 6677655440375633323105676210014578753336568789999999830380215542207
Q 537021.9.peg.7 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 (1033)
Q Consensus 383 gSLVaY~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~ 449 (1033)
+-|++++..=.-|.+=..-.=|+||+ .++||+-+|+|. +-.|+.+-.|+--+.-+.+.
T Consensus 68 ~~LL~~L~~~~~is~~~~~~Gf~~~l----~~l~Dl~iDiP~-----a~~~la~~l~~~i~~~~l~l 125 (364)
T 3l6a_A 68 SSLISLLKQEGIATSDNFMQAFLNVL----DQCPKLEVDIPL-----VKSYLAQFAARAIISELVSI 125 (364)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHH----HTHHHHHHHCTT-----HHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHCCCC-----HHHHHHHHHHHHHHCCCCCH
T ss_conf 99999998779999999999999999----764675324663-----69999999999999289689
No 44
>2zkq_k 40S ribosomal protein S14E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_K*
Probab=71.42 E-value=1.8 Score=20.73 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHH---HHHCCCCCHHHCC
Q ss_conf 34444204667765---5440375633323
Q 537021.9.peg.7 375 GPGRGSGAGSVTAY---ALTITDIDPLRFS 401 (1033)
Q Consensus 375 GpGRGSAagSLVaY---~LgIT~VDPi~~~ 401 (1033)
||||-+|--+|-.- ..-|+|+-||.||
T Consensus 109 GpGr~~air~l~~~glkI~~I~D~TpiphN 138 (151)
T 2zkq_k 109 GPGAQSALRALARSGMKIGRIEDVTPIPSD 138 (151)
T ss_dssp CTTHHHHHHHHHHHTCCCSCEECCCCCCCS
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 875788998897689389999981989989
No 45
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=68.57 E-value=4.4 Score=17.38 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCCHHHHHCCCCCCEEEEEEEEEEE---EEECCCCCC-EEEEEEEECCCCEEEEEECC
Q ss_conf 9768898505589889999999611---210158887-69999998497049999539
Q 537021.9.peg.7 980 IKGYEESVATIRGNNIRLAAMVVSK---QQKKTRKGS-RIGWVTFSEPAKEYEANFFP 1033 (1033)
Q Consensus 980 ~~~~~~~~~~~~g~~v~iaG~V~~i---~~~~TKkG~-~mafltleD~~g~~e~~iFP 1033 (1033)
+++++++.... +..+|.|.|+.. +....++|. ++.-+.|.|++|.+.+++|.
T Consensus 4 ~~pI~~L~p~~--~~w~I~~RV~~k~~~~~~~~~~~~g~v~~~~l~De~G~I~~~~~~ 59 (114)
T 1ynx_A 4 IFAIEQLSPYQ--NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFN 59 (114)
T ss_dssp BCCGGGCCTTT--CCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECH
T ss_pred CEEHHHCCCCC--CCEEEEEEEEEECCCEEEECCCCCCEEEEEEEECCCCCEEEEEEC
T ss_conf 33189968999--967999999882156036558996449999999189989999912
No 46
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=68.29 E-value=4.4 Score=17.34 Aligned_cols=47 Identities=13% Similarity=-0.050 Sum_probs=32.4
Q ss_pred HHCCCCC-CEEEEEEEEEEEEEECCCC------------C--CEEEEEEEECCCCEEEEEEC
Q ss_conf 8505589-8899999996112101588------------8--76999999849704999953
Q 537021.9.peg.7 986 SVATIRG-NNIRLAAMVVSKQQKKTRK------------G--SRIGWVTFSEPAKEYEANFF 1032 (1033)
Q Consensus 986 ~~~~~~g-~~v~iaG~V~~i~~~~TKk------------G--~~mafltleD~~g~~e~~iF 1032 (1033)
+.++..+ ..+.+.+.|+++..+...+ | -.++-+.+.|+||.+.+++|
T Consensus 19 I~dL~p~~~~vnl~~kVl~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~v~DeTG~i~~tlW 80 (145)
T 1wjj_A 19 VEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTAR 80 (145)
T ss_dssp STTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEEC
T ss_pred HHHCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf 99988999980799999873143674145642221013588747999999758877999996
No 47
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=67.90 E-value=4.3 Score=17.45 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 8999876541034201246432457838999998877898986063055-788899999851047643344442046677
Q 537021.9.peg.7 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY-FLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 (1033)
Q Consensus 308 ~~~Lr~l~~~Gl~~R~~~~~~~~~~~~~~y~~RLe~EL~vI~~~gf~~Y-FLiV~Div~~ak~~gI~vGpGRGSAagSLV 386 (1033)
++.+++.+..=+++-+..+ =++.-...+.+++-++| .-+|.-+|..+-+++ ...|- .++-|+
T Consensus 7 ~Eel~kk~~~il~EY~~~~-------------D~~Ea~~~v~el~~p~~~~~~V~~~i~~~ler~---~~~Re-~~~~LL 69 (339)
T 1ug3_A 7 EEELEKKSKAIIEEYLHLN-------------DMKEAVQCVQELASPSLLFIFVRHGVESTLERS---AIARE-HMGQLL 69 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTC---HHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC---HHHHH-HHHHHH
T ss_conf 9999999999999997389-------------899999999973996017999999999998388---89999-999999
Q ss_pred HHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHH
Q ss_conf 6554403756333231056762100145787533365687899999998303802155422077877
Q 537021.9.peg.7 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 (1033)
Q Consensus 387 aY~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~ 453 (1033)
+++..=--+.+=..--=|+||+ .++||+-+|+|. +..|+.+-.|+--+..+.+++.+.
T Consensus 70 ~~L~~~~~ls~~~i~~Gf~~~l----~~l~Dl~iDiP~-----a~~~la~~~~~~i~~~~l~l~~l~ 127 (339)
T 1ug3_A 70 HQLLCAGHLSTAQYYQGLYEIL----ELAEDMEIDIPH-----VWLYLAELVTPILQEGGVPMGELF 127 (339)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHH----HHHHHHTTTCTT-----HHHHHHHHHGGGGSTTSCCHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHH----HHHHHHHHCCCH-----HHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9998779999999999999999----762686540311-----799999999999984880499999
No 48
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=66.41 E-value=4.8 Score=17.06 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=33.8
Q ss_pred HCCCC-CCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 50558-98899999996112101588876999999849704999953
Q 537021.9.peg.7 987 VATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 (1033)
Q Consensus 987 ~~~~~-g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g~~e~~iF 1032 (1033)
.++.. ++.|.+.|-|+++-.+++. .......+.|+||.+.+++|
T Consensus 9 ~Dl~~~~~~V~i~~kV~~i~e~~~~--~~~~~g~l~DeTG~Ir~t~W 53 (109)
T 2kbn_A 9 VDIVENGQWANLKAKVIQLWENTHE--SISQVGLLGDETGIIKFTIW 53 (109)
T ss_dssp TTCCSTTCEEEEEEEEEEEEECCCS--SEEEEEEEECTTCCEEEEEE
T ss_pred ECCCCCCCCEEEEEEEEEECCCCCC--CEEEEEEEECCCCEEEEEEE
T ss_conf 1468899838999999996089996--19999999888886999996
No 49
>1s1h_K RP59A, 40S ribosomal protein S14-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=66.30 E-value=2.1 Score=20.11 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHH---HHHCCCCCHHHCC
Q ss_conf 34444204667765---5440375633323
Q 537021.9.peg.7 375 GPGRGSGAGSVTAY---ALTITDIDPLRFS 401 (1033)
Q Consensus 375 GpGRGSAagSLVaY---~LgIT~VDPi~~~ 401 (1033)
||||-||--.|..- ..-|+||-||.||
T Consensus 94 G~Gr~saik~l~~~glkI~~I~DvTpiphN 123 (136)
T 1s1h_K 94 GPGGQAALRALARSGLRIGRIEDVTPVPSD 123 (136)
T ss_dssp CCSHHHHHHHHHHHSSEEEEEEECCCCCSS
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 873899999998789889999983989989
No 50
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=65.86 E-value=4.9 Score=16.98 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=28.3
Q ss_pred HHHHCCCCHHHHHHHH-HHHHCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2685896989999999-99837999997899973-4824799899998886767234790389999989999
Q 537021.9.peg.7 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR-VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 (1033)
Q Consensus 839 l~~Ikgvg~~~~~~Iv-e~r~~g~f~sl~df~~r-v~~~~~nk~~le~Li~aGAfD~~~~~R~~ll~~i~~~ 908 (1033)
|..|+|||.++|+.|+ |-+ +++..+..-... ..........+++ +-++|+++.+.-..+..+
T Consensus 125 L~~vpGIGkKtAeRIilELk--dKl~~~~~~~~~~~~~~~~~~e~~~A------L~~LGy~~~ea~~av~~i 188 (212)
T 2ztd_A 125 LTRVPGIGKRGAERMVLELR--DKVGVAATGGALSTNGHAVRSPVVEA------LVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHHT--TTCC-------------CCHHHHHHH------HHHTTCCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCHHHHHHH------HHHCCCCHHHHHHHHHHH
T ss_conf 85177824888999999997--54313334554345664317899999------998599989999999999
No 51
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=65.17 E-value=5 Score=16.88 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=4.8
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999998303802
Q 537021.9.peg.7 430 VIRYVQNKYGHE 441 (1033)
Q Consensus 430 vi~y~~~kyG~~ 441 (1033)
+..|..++||.+
T Consensus 211 ~q~~~I~~fG~~ 222 (251)
T 1qwg_A 211 QQVAFILKFGSS 222 (251)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHCCC
T ss_conf 999999997989
No 52
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=63.01 E-value=5.5 Score=16.58 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999730266677751002354202589998888636850
Q 537021.9.peg.7 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 (1033)
Q Consensus 776 ~aylK~~yP~eF~aa~L~~~~~~~~~~~~~i~e~~~~gi~v 816 (1033)
+.||..|||.+|-.-+=-.+|.+.+.. .|-..++..||.|
T Consensus 70 i~~l~~~~P~~W~~l~~KYDP~g~y~~-k~~~~~~~~gi~~ 109 (112)
T 1k19_A 70 IEHLIKNEIEIWRELTAKYDPTGNWRK-KYEDRAKAAGIVI 109 (112)
T ss_dssp HHHHHHHHSCHHHHHHHSSTTTCSSHH-HHHHHHHHHCCCC
T ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHH-HHHHHHHHCCCCC
T ss_conf 999999091999999998698956999-9999999848999
No 53
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA; 2.00A {Aquifex aeolicus VF5}
Probab=62.56 E-value=5.6 Score=16.52 Aligned_cols=41 Identities=7% Similarity=0.137 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHCCCCEEEE--E--CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99899999999789988998--1--165177499999999976996
Q 537021.9.peg.7 27 LSLNNILDKIAADQQPAIAI--T--DTNNLFSALEFSQKACAAGIQ 68 (1033)
Q Consensus 27 ~~~e~LV~~A~~~G~~AiAI--T--D~~nl~Gav~F~~ackk~gIK 68 (1033)
+++++.++..++.+-+++.. | |. ++--..++.+++.+.|.-
T Consensus 2 ~ri~~~f~~~k~~~~~~li~y~t~G~P-~~~~~~~~~~~l~~~G~d 46 (262)
T 2ekc_A 2 GRISDKFTELKEKREKALVSYLMVGYP-DYETSLKAFKEVLKNGTD 46 (262)
T ss_dssp CHHHHHHHHHHHHTBCEEEEEEETTSS-CHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCC
T ss_conf 649999999997599569988828379-868999999999976999
No 54
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor}
Probab=61.82 E-value=5.7 Score=16.42 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHCCCHHHHHHHHHHCCCCEE----EEECCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 432998999999997899889----98116517749999999997699638
Q 537021.9.peg.7 24 EGALSLNNILDKIAADQQPAI----AITDTNNLFSALEFSQKACAAGIQPI 70 (1033)
Q Consensus 24 dg~~~~e~LV~~A~~~G~~Ai----AITD~~nl~Gav~F~~ackk~gIKPI 70 (1033)
.++++++++.+++++.+-+|+ -.-|. +.-...++.++..+.|.--|
T Consensus 2 ~~m~ri~~~f~~~k~~~~~ali~yltaG~P-~~e~s~~~l~~l~~~G~D~i 51 (271)
T 3nav_A 2 NAMNRYQALFQRLSAAQQGAFVPFVTIGDP-NPEQSLAIMQTLIDAGADAL 51 (271)
T ss_dssp -CCCHHHHHHHHHHHTTBCEEEEEEETTSS-CHHHHHHHHHHHHHTTCSSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCCEE
T ss_conf 503589999999997499369989837189-87899999999997699999
No 55
>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M 3jyv_M*
Probab=59.88 E-value=4.1 Score=17.67 Aligned_cols=57 Identities=21% Similarity=0.444 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 85035523342100353198698502685896989999999998379999978999734824799899998886
Q 537021.9.peg.7 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 (1033)
Q Consensus 814 i~vl~PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li~ 887 (1033)
|.|+.-||+ ++..|.++|..|+|||...+..|++.-.-.|- .++ +.++..+++.|..
T Consensus 13 vRI~g~dI~--------g~K~v~~aLt~I~GIG~~~A~~Ic~~lgI~~~-------~kv--g~Lt~~ql~kl~~ 69 (152)
T 2zkq_m 13 LRVLNTNID--------GRRKIAFAITAIKGVGRRYAHVVLRKADIDLT-------KRA--GELTEDEVERVIT 69 (152)
T ss_dssp CCCSTTCCC--------CSSBHHHHGGGSTTCCHHHHHHHHHHHTCCTT-------SBT--TTSCHHHHHHHHH
T ss_pred HHEECCCCC--------CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCC-------CCC--CCCCHHHHHHHHH
T ss_conf 413285279--------99788765002106589999999999389954-------301--5199999999999
No 56
>3ofo_B 30S ribosomal protein S2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_B* 2wwl_B 3ofp_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 3kc4_B 3or9_B 3ora_B 2qal_B* 1p87_B 2aw7_B 2avy_B ...
Probab=59.24 E-value=5.7 Score=16.45 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=28.3
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEECCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 3105676210014578753336568789999999830380-21554220778778899999997527998
Q 537021.9.peg.7 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH-ERVAQIITFGSLQAKAALRDVGRALQMPY 469 (1033)
Q Consensus 401 ~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~-~~va~i~t~~t~~~k~aird~~r~~g~~~ 469 (1033)
|--++.|+-..|.+..=||++.....=.++..++.+--.. ..+--|+|-- +++.+|+..++..|.++
T Consensus 16 np~m~~yI~g~rngi~IIdl~~T~~~L~~A~~~i~~~~~~~~~iLfVgt~~--~~~~~i~~~a~~~~~~y 83 (218)
T 3ofo_B 16 NPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKR--AASEAVKDAALSCDQFF 83 (218)
T ss_dssp CGGGCTTCCCCCSSSCCCCHHHHTTGGGTHHHHHHHHTTTCCCCCEECCSS--SSGGGTSSSTTTSSCCE
T ss_pred CCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHHCCCC
T ss_conf 986301002564996797299999999999999999973799799997768--78999999999809973
No 57
>3iar_A Adenosine deaminase; purine metabolism, structural genomics, structural genomics consortium, SGC, acetylation, disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ...
Probab=58.99 E-value=3.5 Score=18.19 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.0
Q ss_pred HHHHHHCHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 3343314447644329989999999978998
Q 537021.9.peg.7 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQP 42 (1033)
Q Consensus 12 vhLh~hS~ySlldg~~~~e~LV~~A~~~G~~ 42 (1033)
++|||| |+|+++++-|.+.|++.|.+
T Consensus 9 ~eLH~H-----L~Gs~~~~~l~ela~~~g~~ 34 (367)
T 3iar_A 9 VELHVH-----LDGSIKPETILYYGRRRGIA 34 (367)
T ss_dssp EECCBB-----GGGSCCHHHHHHHHHHHTCC
T ss_pred HHHHCC-----CCCCCCHHHHHHHHHHCCCC
T ss_conf 999678-----82788999999999982999
No 58
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=58.91 E-value=3.1 Score=18.62 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 89999985104764334-4442
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGP-GRGS 380 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGp-GRGS 380 (1033)
|+.+|++|++++++|-| |+|+
T Consensus 83 V~~iv~~a~~~~vpv~p~g~G~ 104 (560)
T 1e8g_A 83 VQSIVGLANKFSFPLWPISIGR 104 (560)
T ss_dssp HHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999998798089966799
No 59
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Probab=58.81 E-value=6.3 Score=16.03 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEE-------ECC--------CHHHHHHHHHHHHHHCCCCEE
Q ss_conf 68988133433144476443299899999999789988998-------116--------517749999999997699638
Q 537021.9.peg.7 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI-------TDT--------NNLFSALEFSQKACAAGIQPI 70 (1033)
Q Consensus 6 ~~~~~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAI-------TD~--------~nl~Gav~F~~ackk~gIKPI 70 (1033)
.+-|.|---++.+.++....-.-.++-++..++.|+.+|=| .+. +.+...=++.++|+++||++|
T Consensus 15 ~~~~~~~g~n~~~~~~~~~~~~~te~D~~~ia~~GfN~VRlpv~~~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~vi 94 (341)
T 1vjz_A 15 NTIPRWRGFNLLEAFSIKSTGNFKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHIC 94 (341)
T ss_dssp --CCCCEEEECCTTSSTTCCCCCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 67876025576210113556788799999999869988993066999158888776598999999999999998799899
Q ss_pred EEEE
Q ss_conf 9999
Q 537021.9.peg.7 71 IGCQ 74 (1033)
Q Consensus 71 iG~E 74 (1033)
+-.-
T Consensus 95 ldlH 98 (341)
T 1vjz_A 95 ISLH 98 (341)
T ss_dssp EEEE
T ss_pred EEEC
T ss_conf 9726
No 60
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=58.62 E-value=5.9 Score=16.32 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=6.9
Q ss_pred EEEEEECCHHHHHHHHHHH
Q ss_conf 3999956968999999999
Q 537021.9.peg.7 98 SIVLLVSTAEGYQRLIELV 116 (1033)
Q Consensus 98 ~lvlLAkN~~Gy~nL~kL~ 116 (1033)
|++=|-++...++..++++
T Consensus 39 ~IIdl~~T~~~L~~A~~~l 57 (231)
T 3bbn_B 39 HIINLTRTARFLSEACDLV 57 (231)
T ss_dssp EEECHHHHHHHTHHHHHHS
T ss_pred EEECHHHHHHHHHHHHHHH
T ss_conf 4885999999999999999
No 61
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=57.71 E-value=4.1 Score=17.59 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=10.4
Q ss_pred CCCCCCHHHHHHHH---HHHCCCCCHHHCC
Q ss_conf 34444204667765---5440375633323
Q 537021.9.peg.7 375 GPGRGSGAGSVTAY---ALTITDIDPLRFS 401 (1033)
Q Consensus 375 GpGRGSAagSLVaY---~LgIT~VDPi~~~ 401 (1033)
||||-+|--.|..- .+-|+|+-|+.||
T Consensus 88 G~GR~~aik~l~~~glkI~~I~D~TpiphN 117 (129)
T 2vqe_K 88 GAGREQAIRALQASGLQVKSIVDDTPVPHN 117 (129)
T ss_dssp CTTHHHHHHHHHTSSSEEEECEECCCCCSS
T ss_pred CCCCHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 997299999998789879999989999979
No 62
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A
Probab=57.45 E-value=6.6 Score=15.86 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=52.2
Q ss_pred HHHHHCHHHH--HH---HCCCHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHHC---------CCCEEEEEEEEE
Q ss_conf 3433144476--44---329989999999-97899889981165177499999999976---------996389999998
Q 537021.9.peg.7 13 HLQVHSSYSL--LE---GALSLNNILDKI-AADQQPAIAITDTNNLFSALEFSQKACAA---------GIQPIIGCQLDI 77 (1033)
Q Consensus 13 hLh~hS~ySl--ld---g~~~~e~LV~~A-~~~G~~AiAITD~~nl~Gav~F~~ackk~---------gIKPIiG~E~~v 77 (1033)
|.|-|+.-++ |. ...+|.+++... ...-++-|-|+.+|- -|+|..++|++- ||+.+. +|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~kvLiANRGE--iA~Ri~r~~r~l~~~~~~~e~gi~tva---v~s 80 (540)
T 3glk_A 6 HHHHHENLYFQGLHRDFTVASPAEFVTRFGGDRVIEKVLIANNGI--AAVKCMRSIRRWAYEMFRNERAIRFVV---MVT 80 (540)
T ss_dssp ---------------CCCCSSHHHHHHHTTCSCCCCEEEECCCHH--HHHHHHHHHHHHHHHHHSCTTSSEEEE---EEC
T ss_pred CCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHHCCCCCCCCCCEEE---EEC
T ss_conf 321234213312157775579789998538984324698976859--999999998775431342104974899---984
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEE--ECCHHHHHHHHHHHHHHHH
Q ss_conf 5476643344565666677539999--5696899999999989973
Q 537021.9.peg.7 78 DMQDNLKMTNQGKTPFPTVPSIVLL--VSTAEGYQRLIELVSRMYL 121 (1033)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~lvlL--AkN~~Gy~nL~kL~S~a~~ 121 (1033)
..+.. ......+ ..-+.+.+ +.+.+-|-|.-+++..+..
T Consensus 81 ~~D~~-~~~~~v~----~ad~~~~i~~~~~~~sYL~~~~Ii~~A~~ 121 (540)
T 3glk_A 81 PEDLK-ANAEYIK----MADHYVPVPGGPNNNNYANVELIVDIAKR 121 (540)
T ss_dssp HHHHH-TTCHHHH----HSSEEEECCCSSGGGTTTCHHHHHHHHHH
T ss_pred CCCCC-CCCHHHH----HCCEEEECCCCCHHHCCCCHHHHHHHHHH
T ss_conf 40113-7974477----39789871899735300489999999999
No 63
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=57.43 E-value=6.2 Score=16.12 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHH
Q ss_conf 3344442046677655440375633323105676
Q 537021.9.peg.7 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 (1033)
Q Consensus 374 vGpGRGSAagSLVaY~LgIT~VDPi~~~LlFERF 407 (1033)
+.--+|--.+.+|-|++.+.. -| ..|+|=|-
T Consensus 227 ~~~~~g~l~~~iv~~l~n~~~-~~--~~IyLvRH 257 (469)
T 1bif_A 227 VNRVADHIQSRIVYYLMNIHV-TP--RSIYLCRH 257 (469)
T ss_dssp EECCCSHHHHHHHHHHTTCCC-CC--CCEEEEEC
T ss_pred EECCCCCCCHHHHHHHHCCCC-CC--CCCCCCCC
T ss_conf 944667640334665223678-87--84551059
No 64
>3ou8_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.51A {Pseudomonas aeruginosa}
Probab=57.21 E-value=2.8 Score=19.01 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.8
Q ss_pred HHHHHHCHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 3343314447644329989999999978998
Q 537021.9.peg.7 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQP 42 (1033)
Q Consensus 12 vhLh~hS~ySlldg~~~~e~LV~~A~~~G~~ 42 (1033)
++||+| |+|+.+++.+.+.|++.|.+
T Consensus 13 ~eLH~H-----l~Gs~~~~~l~ela~~~~~~ 38 (326)
T 3ou8_A 13 AELHLH-----LEGTLEPELLFALAERNRIA 38 (326)
T ss_dssp EECSBB-----GGGGCCHHHHHHHHHHTTCC
T ss_pred HHHHCC-----CCCCCCHHHHHHHHHHCCCC
T ss_conf 887468-----76787999999999974999
No 65
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, structural genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=56.72 E-value=6.8 Score=15.77 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCE
Q ss_conf 055898899999996112101588876999999849704
Q 537021.9.peg.7 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 (1033)
Q Consensus 988 ~~~~g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g~ 1026 (1033)
...-|++|.+-|+|+.++++..-.|..+.++|..|+...
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnk 83 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNK 83 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCS
T ss_pred HHHHCCEEEEEEEEEEEEECCCCCCEEEEEEEEECCCCC
T ss_conf 244204089878999865236766137999996222367
No 66
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogenesis, methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=56.42 E-value=5.3 Score=16.70 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=28.7
Q ss_pred HHHH--CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCC
Q ss_conf 2685--89698999999999837999997899973482479
Q 537021.9.peg.7 839 LAAI--KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 (1033)
Q Consensus 839 l~~I--kgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~ 877 (1033)
|.++ .+++...++.|++.|..++|+|+.||...-....+
T Consensus 201 L~Al~~~~ls~~~A~~li~~Rp~~g~~~~~df~~~~~~~~~ 241 (298)
T 3ci0_K 201 LEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADV 241 (298)
T ss_dssp HHHHTC-------CCHHHHTCCTTCCSCHHHHHTSGGGSSS
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCHHHCCC
T ss_conf 98760688999999999983600357789999716000146
No 67
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3
Probab=55.62 E-value=7.1 Score=15.64 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCCEEEECCCC
Q ss_conf 9999999998189899808830
Q 537021.9.peg.7 197 ESQVVQLAYTHELPLVATNNSL 218 (1033)
Q Consensus 197 ~~~l~~lA~~~~iPlVaTndv~ 218 (1033)
..++++.|+++|+.++.+...+
T Consensus 87 ~d~~v~~a~~~Gi~v~~~~~~~ 108 (373)
T 1rh9_A 87 LDFVISEAKKYGIHLIMSLVNN 108 (373)
T ss_dssp HHHHHHHHHHTTCEEEEECCBS
T ss_pred HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999987799899953655
No 68
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=55.28 E-value=7.1 Score=15.60 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCEEEECCC
Q ss_conf 99999999818989980883
Q 537021.9.peg.7 198 SQVVQLAYTHELPLVATNNS 217 (1033)
Q Consensus 198 ~~l~~lA~~~~iPlVaTndv 217 (1033)
+.+++.+.+.+.-+|+.+-.
T Consensus 170 ee~v~~a~e~~aD~VgvS~l 189 (262)
T 1xrs_B 170 EDFIKKAVELEADVLLVSQT 189 (262)
T ss_dssp HHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHCCCCEEEEEEE
T ss_conf 99999998649999999752
No 69
>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=53.33 E-value=7.6 Score=15.36 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEC---CCHH---HHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 29989999999978998899811---6517---74999999999769963899999
Q 537021.9.peg.7 26 ALSLNNILDKIAADQQPAIAITD---TNNL---FSALEFSQKACAAGIQPIIGCQL 75 (1033)
Q Consensus 26 ~~~~e~LV~~A~~~G~~AiAITD---~~nl---~Gav~F~~ackk~gIKPIiG~E~ 75 (1033)
-.++++.++.|++.|+.+|-|.. ...+ ..+-++-+.++++||+. .++..
T Consensus 18 ~l~l~e~i~~a~e~Gfd~IEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i-~~l~~ 72 (272)
T 2q02_A 18 GLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEI-VTINA 72 (272)
T ss_dssp TSCHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEE-EEEEE
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEECC
T ss_conf 98999999999981999899824666533347660999999999859947-88336
No 70
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=53.12 E-value=7.7 Score=15.34 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=43.7
Q ss_pred HCCCHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHHHC---------CCCEEEEEEEEEECC-CCCCCCCCCCCCC
Q ss_conf 32998999999997-899889981165177499999999976---------996389999998547-6643344565666
Q 537021.9.peg.7 25 GALSLNNILDKIAA-DQQPAIAITDTNNLFSALEFSQKACAA---------GIQPIIGCQLDIDMQ-DNLKMTNQGKTPF 93 (1033)
Q Consensus 25 g~~~~e~LV~~A~~-~G~~AiAITD~~nl~Gav~F~~ackk~---------gIKPIiG~E~~v~~~-~~~~~~~~~~~~~ 93 (1033)
...+|++.+.+.-. .-++-|-|+..| =-|++..++|++. ||+.+ -+|...+ +... ...+
T Consensus 39 ~~~~~~~~~~~~~g~~~~~kvLIANRG--EiA~Ri~Ra~r~~g~e~~~~e~gi~tv---avys~~D~~~~a--~~v~--- 108 (587)
T 3jrx_A 39 TVASPAEFVTRFGGDRVIEKVLIANNG--IAAVKCMRSIRRWAYEMFRNERAIRFV---VMVTPEDLKANA--EYIK--- 108 (587)
T ss_dssp CCSSHHHHHHHTTCCCCCCEEEECCCH--HHHHHHHHHHHHHHHHHHSCTTSSEEE---EEECHHHHHTTC--HHHH---
T ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCC--HHHHHHHHHHHHHHHCCCCCCCCCEEE---EEECCCCCCCCC--HHHH---
T ss_conf 437989998743898433269997784--999999999777532234201596089---998752223687--3476---
Q ss_pred CCCCEEEEE--ECCHHHHHHHHHHHHHHHH
Q ss_conf 677539999--5696899999999989973
Q 537021.9.peg.7 94 PTVPSIVLL--VSTAEGYQRLIELVSRMYL 121 (1033)
Q Consensus 94 ~~~~~lvlL--AkN~~Gy~nL~kL~S~a~~ 121 (1033)
..-+.+.+ +.+.+-|-|.-.++..+..
T Consensus 109 -~AD~~v~i~~~~~~~sYlni~~Ii~iA~~ 137 (587)
T 3jrx_A 109 -MADHYVPVPGGPNNNNYANVELIVDIAKR 137 (587)
T ss_dssp -HSSEEEECCCSSGGGTTTCHHHHHHHHHH
T ss_pred -HCCEEEECCCCCHHHCCCCHHHHHHHHHH
T ss_conf -39788872898745220499999999999
No 71
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=52.65 E-value=1.6 Score=21.00 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHH---HHHCCCCCHHHCC
Q ss_conf 34444204667765---5440375633323
Q 537021.9.peg.7 375 GPGRGSGAGSVTAY---ALTITDIDPLRFS 401 (1033)
Q Consensus 375 GpGRGSAagSLVaY---~LgIT~VDPi~~~ 401 (1033)
||||-+|--+|..- ..-|+|+-|+.||
T Consensus 101 G~GR~~air~L~~~gl~I~~I~D~TpiphN 130 (140)
T 3bbn_K 101 GLGRDAALRAIRRSGILLSFVRDVTPMPHN 130 (140)
T ss_dssp STTSSHHHHHHHTTTCEEEEEEECCCCCCS
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 864699999998689889999983999989
No 72
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycoprotein; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Probab=51.99 E-value=7.9 Score=15.20 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCEEEE-------------ECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 899999999789988998-------------11651774999999999769963899999985
Q 537021.9.peg.7 29 LNNILDKIAADQQPAIAI-------------TDTNNLFSALEFSQKACAAGIQPIIGCQLDID 78 (1033)
Q Consensus 29 ~e~LV~~A~~~G~~AiAI-------------TD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~ 78 (1033)
=++.++++|..|+.+|+. -|-....-..+|.+.|+++|+.-|+=.-=|++
T Consensus 38 W~d~l~K~KA~G~N~VstYv~Wn~HEp~~G~~df~G~~Dl~~F~~la~e~GLyvilRpGPYi~ 100 (971)
T 1tg7_A 38 YIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYIN 100 (971)
T ss_dssp HHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHHHHHHHTCEEEEECCSCCC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEEECCCCEEE
T ss_conf 899999999709988998467645579688851254688999999999859989987688846
No 73
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.90 E-value=8 Score=15.19 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCHHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 877898986063055-7888999998510476433444420466776554403756333231056762100145787533
Q 537021.9.peg.7 342 DFELNVIARMKFSGY-FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 (1033)
Q Consensus 342 e~EL~vI~~~gf~~Y-FLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDi 420 (1033)
+.-...|.+++.+.| .-+|...|..+-++. +.-|--+.+.|..++..=.-|.+=+.--=|+|.+ .++|||=+
T Consensus 183 ~EA~~cl~eL~~p~fhhe~V~~~i~~~lE~~---~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~~v~----~~l~Di~l 255 (307)
T 2zu6_B 183 SEAEHCLKELEVPHFHHELVYEAIIMVLEST---GESTFKMILDLLKSLWKSSTITVDQMKRGYERIY----NEIPDINL 255 (307)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHHHHHHTCC---SSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH----HHCCHHHH
T ss_conf 9999999975886013999999999999458---5768999999999998879978999999999998----64728634
Q ss_pred CCCHHHH
Q ss_conf 3656878
Q 537021.9.peg.7 421 DFCQDRR 427 (1033)
Q Consensus 421 Df~~~~R 427 (1033)
|+|....
T Consensus 256 DiP~A~~ 262 (307)
T 2zu6_B 256 DVPHSYS 262 (307)
T ss_dssp HCTTHHH
T ss_pred CCCCHHH
T ss_conf 5665299
No 74
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=51.03 E-value=8.2 Score=15.09 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHCCCCEEEE------E-CCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9899999999789988998------1-1651774999999999769963899
Q 537021.9.peg.7 28 SLNNILDKIAADQQPAIAI------T-DTNNLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 28 ~~e~LV~~A~~~G~~AiAI------T-D~~nl~Gav~F~~ackk~gIKPIiG 72 (1033)
+.+++.+.-++.|+.+|=| . +++++.-+.++.+.|+++|+|.++-
T Consensus 28 ~~~d~~~~lk~~G~N~VRi~vW~~P~~g~~~~~~~~~~~~~a~~~Gm~v~ld 79 (334)
T 1fob_A 28 QTQALETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGMSLYLD 79 (334)
T ss_dssp CBCCHHHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7345999999849997998541279888679999999999999889989996
No 75
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=50.42 E-value=8.4 Score=15.02 Aligned_cols=54 Identities=7% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCCCHHHHHCCCCCCEEEEEEEEEEEEEEC---CC-CCC--EEEEEEEECCCCE-EEEEEC
Q ss_conf 897688985055898899999996112101---58-887--6999999849704-999953
Q 537021.9.peg.7 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKK---TR-KGS--RIGWVTFSEPAKE-YEANFF 1032 (1033)
Q Consensus 979 ~~~~~~~~~~~~~g~~v~iaG~V~~i~~~~---TK-kG~--~mafltleD~~g~-~e~~iF 1032 (1033)
...++.++.+...+..+.+.|+|+.+.... +| .|+ ...-+.|.|.++. +.+++|
T Consensus 125 ~f~~i~di~~~~~~~~~DviG~v~~v~~~~~~~~k~~~~~~~~~~i~l~D~s~~~i~~tlW 185 (246)
T 1jmc_A 125 DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLW 185 (246)
T ss_dssp CBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEE
T ss_pred CCCCHHHHHCCCCCCCCCEEEEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf 0145999750057886418999989746399997468975279999997079999999998
No 76
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=49.92 E-value=7.8 Score=15.28 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=30.6
Q ss_pred EEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 98502685896989999999998379999978999734824799899998886767234790389999
Q 537021.9.peg.7 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 (1033)
Q Consensus 835 Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li~aGAfD~~~~~R~~ll 902 (1033)
+...|..|+|||...+..|++ .|.|+.+++.- +...|. +.+.+|....+-+
T Consensus 17 ~~~~L~~I~gIG~~~a~~L~~-----~Fgsl~~i~~A------s~eeL~------~i~GiG~~~A~~I 67 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLT-----TFGSLEQLIAA------SREDLA------LCPGLGPQKARRL 67 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHH-----HTCBHHHHHHC------CHHHHH------TSTTCCHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHH-----HHCCHHHHHHH------HHHHHH------CCCCCCHHHHHHH
T ss_conf 999875899759999999999-----94888999998------787772------6899699999999
No 77
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=49.03 E-value=8.7 Score=14.86 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=43.4
Q ss_pred HHHHHHCCCCCCCCHHHH---------HHHHHHHHHCCCHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 673341033553001256---------89887886326841307889762012----11016778789999986249999
Q 537021.9.peg.7 677 LIDPMLKETQGVIIYQEQ---------VMQIAQLLSGYSLSEADVLRRAMGKK----IKEEMDKQKERFISGASKNGISK 743 (1033)
Q Consensus 677 ~l~~iL~~T~Gv~vyQEQ---------vm~ia~~~ag~~~~ead~lRra~~kk----~~~~~~~~~~~f~~g~~~~g~~~ 743 (1033)
.|+++...+|+.+|+.=+ .|.-...+.|++.++....|.-.... ..+.+-..-..+..-+..+++++
T Consensus 146 ~L~~l~~~iy~~lv~~l~k~L~~~l~pail~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~Il~~L~~~~~~L~~~~v~~ 225 (419)
T 2f6h_X 146 DFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFANTEEYTMDDILTFFNSIYWCMKSFHIEN 225 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC---------------CCCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999999999899889998366555677666555655666667775689999999999999999859999
Q ss_pred HHHHHHHHHHHHH-HHCCCC
Q ss_conf 9999999999975-000133
Q 537021.9.peg.7 744 TIAVNIFELLAKF-ADYGFN 762 (1033)
Q Consensus 744 ~~a~~i~~~i~~f-~~Y~Fn 762 (1033)
..+..+|.++-.| ..-.||
T Consensus 226 ~l~~qif~qlf~~in~~lFN 245 (419)
T 2f6h_X 226 EVFHAVVTTLLNYVDAICFN 245 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999899999
No 78
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
Probab=48.67 E-value=8.8 Score=14.82 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.5
Q ss_pred HHHHHHHCCCCCCCEEEECCCCHHH
Q ss_conf 0112210024474403352566666
Q 537021.9.peg.7 517 KLEGLYRHASTHAAGIVIGDRPLSQ 541 (1033)
Q Consensus 517 ~leg~~r~~~~Ha~Gvvi~~~~l~~ 541 (1033)
.|---|..++.|-+|+|+..+.+..
T Consensus 55 ~l~tsp~~~~~~IsGvILfeeTl~q 79 (347)
T 3mmt_A 55 MLFTAKEAMESAISGVILFDETLRQ 79 (347)
T ss_dssp HHHTCHHHHHHTEEEEEECHHHHTC
T ss_pred HHCCCCHHHHCCEEEEECCCHHHHC
T ss_conf 7716854765566489755235422
No 79
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=47.86 E-value=9.1 Score=14.72 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=8.4
Q ss_pred HHHHCCCCHHHHHHHH
Q ss_conf 2685896989999999
Q 537021.9.peg.7 839 LAAIKGVGTTTARHIM 854 (1033)
Q Consensus 839 l~~Ikgvg~~~~~~Iv 854 (1033)
|+.|+|||.++|++|+
T Consensus 110 L~~vpGIGkKtA~rIi 125 (203)
T 1cuk_A 110 LVKLPGIGKKTAERLI 125 (203)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHH
T ss_conf 6069987799999999
No 80
>3n4f_A Mandelate racemase/muconate lactonizing protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MSE; 1.88A {Geobacillus SP}
Probab=47.39 E-value=9.2 Score=14.67 Aligned_cols=76 Identities=14% Similarity=0.330 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCCCCCCC-CCHHHHHHH--HHHHCCCCCHHHC-CCHHHHHH------HHCCCCCCC-----CCCCCCH
Q ss_conf 8999998510476433444-420466776--5544037563332-31056762------100145787-----5333656
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGPGR-GSGAGSVTA--YALTITDIDPLRF-SLLFERFL------NPDRMSMPD-----FDIDFCQ 424 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGpGR-GSAagSLVa--Y~LgIT~VDPi~~-~LlFERFL------np~R~~~PD-----IDiDf~~ 424 (1033)
...+...|+..|+.+.|+= ||+-|...+ .+..+.....++| .+++|.++ .-++..+|| |++|
T Consensus 294 ~~~ia~~A~~~gi~v~~h~~~~~i~~aa~~hl~aa~~n~~~~E~~~~~~~~~~~~~~~i~~G~~~~p~~PGLGve~d--- 370 (392)
T 3n4f_A 294 WMELGEKLDAHGLRSAPHCYGNAYGIYASGHLSAAVRNFEFVEYDDITIEGMDVSGYRIENGEIHVPATPGFGIVFD--- 370 (392)
T ss_dssp HHHHHHHHHHTTCEECCBCCSCHHHHHHHHHHGGGCTTBCCEEECCEEETTEECTTCEEETTEEEECCSSBTSCEEC---
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCEEECCEEECCCCCCCCEEEC---
T ss_conf 99999999987991875079868999999999996899970332632465544689876799998999999763589---
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 87899999998303802
Q 537021.9.peg.7 425 DRRDEVIRYVQNKYGHE 441 (1033)
Q Consensus 425 ~~R~~vi~y~~~kyG~~ 441 (1033)
+++++|+.+|++..
T Consensus 371 ---ee~l~~~~~~~~w~ 384 (392)
T 3n4f_A 371 ---DELVTYLINRSGWS 384 (392)
T ss_dssp ---HHHHHHHHHHHSEE
T ss_pred ---HHHHHHHHCCCCCC
T ss_conf ---99998662752453
No 81
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=46.59 E-value=9.4 Score=14.58 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=37.6
Q ss_pred HHHHHHHHHHCCCCEEEE-----E--------CCCHHHHHHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 899999999789988998-----1--------1651774999999999769963899999985
Q 537021.9.peg.7 29 LNNILDKIAADQQPAIAI-----T--------DTNNLFSALEFSQKACAAGIQPIIGCQLDID 78 (1033)
Q Consensus 29 ~e~LV~~A~~~G~~AiAI-----T--------D~~nl~Gav~F~~ackk~gIKPIiG~E~~v~ 78 (1033)
-++.++++|++|+.+|-+ . |-.....+.+|+++|.+.|+.-|.-.--|++
T Consensus 39 w~~~l~~~K~~G~N~Vrtyv~Wn~HeP~~g~~df~g~~dl~~fl~la~e~GL~Vilr~gpyi~ 101 (612)
T 3d3a_A 39 WEHRIKMCKALGMNTICLYVFWNFHEPEEGRYDFAGQKDIAAFCRLAQENGMYVIVRPGPYVC 101 (612)
T ss_dssp HHHHHHHHHHHTCCEEEEECCHHHHCSSTTCCCCSGGGCHHHHHHHHHHTTCEEEEECCSCCC
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 999999999729989996063521388788157544015999999999859999995587456
No 82
>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=46.03 E-value=9.6 Score=14.51 Aligned_cols=45 Identities=18% Similarity=-0.023 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 299899999999789988998116517749999999997699638
Q 537021.9.peg.7 26 ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 (1033)
Q Consensus 26 ~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPI 70 (1033)
..++++.++.++++|+.+|=|.....-.-.-++.++++++|++..
T Consensus 37 ~~~l~e~l~~~~~~GfdgiEl~~~~~~~~~~~~k~~l~~~gl~v~ 81 (287)
T 3kws_A 37 GESLNEKLDFMEKLGVVGFEPGGGGLAGRVNEIKQALNGRNIKVS 81 (287)
T ss_dssp CSSHHHHHHHHHHTTCCEEECBSTTCGGGHHHHHHHHTTSSCEEC
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 999999999999809998997897436459999999998399799
No 83
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*
Probab=45.79 E-value=9.7 Score=14.48 Aligned_cols=24 Identities=8% Similarity=0.092 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 999999999981898998088300
Q 537021.9.peg.7 196 RESQVVQLAYTHELPLVATNNSLF 219 (1033)
Q Consensus 196 ~~~~l~~lA~~~~iPlVaTndv~Y 219 (1033)
....++..|++.||.++.+-..+.
T Consensus 112 ~lD~~i~~a~~~Gi~vil~l~~~w 135 (440)
T 1uuq_A 112 GLDYLLVELAKRDMTVVLYFNNFW 135 (440)
T ss_dssp HHHHHHHHHHHTTCEEEEECCBSS
T ss_pred HHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 999999999976993045034344
No 84
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=45.64 E-value=9.7 Score=14.47 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCC-CCH----HHHHHHHHHHCCC----CCHHH-CCCHHHHH-HHH-----CCCCCC
Q ss_conf 30557888999998510476433444-420----4667765544037----56333-23105676-210-----014578
Q 537021.9.peg.7 353 FSGYFLIVADFIQWAKKNNIPVGPGR-GSG----AGSVTAYALTITD----IDPLR-FSLLFERF-LNP-----DRMSMP 416 (1033)
Q Consensus 353 f~~YFLiV~Div~~ak~~gI~vGpGR-GSA----agSLVaY~LgIT~----VDPi~-~~LlFERF-Lnp-----~R~~~P 416 (1033)
..+=+.=...+.+.|++.|+.+.|+- ||+ |+.-++-++.... .+|.- ++.+.+.. .+| ++..+|
T Consensus 285 ~~GGit~~~~i~~~A~~~gi~v~~h~~~~~i~~aa~~hl~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p 364 (394)
T 3mqt_A 285 RCGGVTELLRIMDICEHHNAQLMPHNWKTGITAAAARHFGIVCHISEYVEYLHPDFWNGTLTQQLTLNEPKIIDGAIEVS 364 (394)
T ss_dssp TSSCHHHHHHHHHHHHHHTCEECCCCCSCHHHHHHHHHHHHHCTTCSCCEECCTTTCCCHHHHHTBSSCCCCBTTBBCCC
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHCCCCCEEECCEEECC
T ss_conf 07882589999999998698697428885799999999999767411466537411233024553368981568589899
Q ss_pred C---CCCCCCHHHHHHHHHHHHHHC-CCC
Q ss_conf 7---533365687899999998303-802
Q 537021.9.peg.7 417 D---FDIDFCQDRRDEVIRYVQNKY-GHE 441 (1033)
Q Consensus 417 D---IDiDf~~~~R~~vi~y~~~ky-G~~ 441 (1033)
| +-+++. .+.+-+|..+|| |..
T Consensus 365 ~~PGLGieid---~d~l~~~~~~~~~~~~ 390 (394)
T 3mqt_A 365 DKPGLGIELN---IEFVEQVTGHKFEGHH 390 (394)
T ss_dssp CCSBTCCCBC---HHHHHHHHCSCC----
T ss_pred CCCCCCEEEC---HHHHHHHCCCCCCCCC
T ss_conf 9899976479---9999752289778867
No 85
>3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium PHSC20C1} PDB: 3msy_A
Probab=45.17 E-value=9.9 Score=14.41 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=14.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8999998510476433444420466776554
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGpGRGSAagSLVaY~L 390 (1033)
...+...|+..|+.++|+=+++++.-++-.+
T Consensus 303 ~~~i~~~A~~~gi~v~~h~~~~~~~h~~aa~ 333 (398)
T 3no1_A 303 WLRTAAIATSYDVQMGHHEEPQVSTHLLASQ 333 (398)
T ss_dssp HHHHHHHHHHTTCEECCCSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEECCCHHHHHHHHHHHC
T ss_conf 9999999988898897475899999999974
No 86
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA hydration, sodium ION, quadruplex DNA, DNA-binding protein/DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=44.85 E-value=10 Score=14.38 Aligned_cols=12 Identities=17% Similarity=0.240 Sum_probs=6.3
Q ss_pred CCCEEEEEECCH
Q ss_conf 775399995696
Q 537021.9.peg.7 95 TVPSIVLLVSTA 106 (1033)
Q Consensus 95 ~~~~lvlLAkN~ 106 (1033)
.+-.++++|+|.
T Consensus 96 ~~l~v~lFa~~~ 107 (495)
T 1jb7_A 96 DYATLVLYAKRF 107 (495)
T ss_dssp CCEEEEEEESSG
T ss_pred CCEEEEEECCCH
T ss_conf 870899974897
No 87
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=44.50 E-value=8.5 Score=14.95 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 85026858969899999999983799999789997
Q 537021.9.peg.7 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 (1033)
Q Consensus 836 r~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~ 870 (1033)
++-|..|+|||...+..|++. |.|+.++..
T Consensus 13 ~~~L~~IpgIG~~~a~~L~~~-----F~s~~~i~~ 42 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLKH-----FGSVERVFT 42 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-----HCSHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHH-----HCCHHHHHH
T ss_conf 999848999429999999999-----688898999
No 88
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=44.48 E-value=10 Score=14.33 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHCCCCEE----EEECCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 2998999999997899889----98116517749999999997699638
Q 537021.9.peg.7 26 ALSLNNILDKIAADQQPAI----AITDTNNLFSALEFSQKACAAGIQPI 70 (1033)
Q Consensus 26 ~~~~e~LV~~A~~~G~~Ai----AITD~~nl~Gav~F~~ackk~gIKPI 70 (1033)
++++++..+..++.|-+|+ -.-|. ++-...++..++.++|.--|
T Consensus 1 M~ri~~~f~~~k~~~~~ali~y~taG~P-~~~~~~~~l~~l~~~GaD~i 48 (268)
T 1qop_A 1 MERYENLFAQLNDRREGAFVPFVTLGDP-GIEQSLKIIDTLIDAGADAL 48 (268)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEEETTSS-CHHHHHHHHHHHHHTTCSSE
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCCEE
T ss_conf 9738999999987499368988817079-87999999999997799999
No 89
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=44.31 E-value=7.9 Score=15.22 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 98502685896989999999998379999978999
Q 537021.9.peg.7 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 (1033)
Q Consensus 835 Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~ 869 (1033)
+...|+.|+|||...+..|++ .|.|+.+++
T Consensus 30 ~~~~L~~I~gIGk~~A~~L~~-----~F~Si~~l~ 59 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLT-----TFGSLEQLI 59 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH-----HHSSHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHH-----HHCCCHHHH
T ss_conf 999864688859999999999-----958829899
No 90
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=43.86 E-value=10 Score=14.26 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=18.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89981165177499999999976996389
Q 537021.9.peg.7 43 AIAITDTNNLFSALEFSQKACAAGIQPII 71 (1033)
Q Consensus 43 AiAITD~~nl~Gav~F~~ackk~gIKPIi 71 (1033)
-|-|...| ==+++..++|++.||++|.
T Consensus 3 kiLIanrG--eiA~riira~relGi~tVa 29 (451)
T 2vpq_A 3 KVLIANRG--EIAVRIIRACRDLGIQTVA 29 (451)
T ss_dssp EEEECCCH--HHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCEEEE
T ss_conf 89998970--9999999999987995999
No 91
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=43.56 E-value=10 Score=14.23 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHCCCHHHHH---HHHHHCCCCEEEEEC--------------------CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 44329989999---999978998899811--------------------65177499999999976996389
Q 537021.9.peg.7 23 LEGALSLNNIL---DKIAADQQPAIAITD--------------------TNNLFSALEFSQKACAAGIQPII 71 (1033)
Q Consensus 23 ldg~~~~e~LV---~~A~~~G~~AiAITD--------------------~~nl~Gav~F~~ackk~gIKPIi 71 (1033)
.||+...+.++ ..-+++|+.||=|+= .|++-..-+|.++|.+.|||-|+
T Consensus 29 ~dg~Gd~~g~~~kLdyl~~LGv~~i~l~Pi~~~~~~~y~~~dy~~vd~~~Gt~~dfk~lV~~aH~~gi~Vil 100 (424)
T 2dh2_A 29 GHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIRVIL 100 (424)
T ss_dssp CTTCCSHHHHHTTHHHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 998649999998517998759998998998728889988768742185569999999999999862888999
No 92
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=43.15 E-value=11 Score=14.18 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=42.0
Q ss_pred HHHHHHCHHHHHHHCC-CHHHHHHHHHHCCCCEEEEEC--------------CCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 3343314447644329-989999999978998899811--------------6517749999999997699638
Q 537021.9.peg.7 12 VHLQVHSSYSLLEGAL-SLNNILDKIAADQQPAIAITD--------------TNNLFSALEFSQKACAAGIQPI 70 (1033)
Q Consensus 12 vhLh~hS~ySlldg~~-~~e~LV~~A~~~G~~AiAITD--------------~~nl~Gav~F~~ackk~gIKPI 70 (1033)
..+-++| ||+.+.+. .+++.++.+++.|+.+|=|.. .......-++.+.+.++|+++.
T Consensus 21 ~~ig~~~-ys~~~~~~~dl~~~L~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~ 93 (305)
T 3obe_A 21 KKMGLQT-YSLGQELLQDMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRIS 93 (305)
T ss_dssp CCCEEEG-GGGTHHHHTTHHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEE
T ss_pred CEEEEEE-EECCCCHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 6389998-453767113999999999984999799877666421123447411123209999999998498685
No 93
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=43.12 E-value=3.9 Score=17.78 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 198698502685896989999999998379999978999734824799899998886
Q 537021.9.peg.7 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 (1033)
Q Consensus 831 ~~~~Ir~Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~Li~ 887 (1033)
++..|.++|..|+|||...+..|.+.-.=.|. .++ ..++..+++.|..
T Consensus 11 ~~K~v~~aLt~I~GIG~~~A~~Ic~~lGId~~-------~kv--g~Lt~~qi~~l~~ 58 (126)
T 2vqe_M 11 RNKRVDVALTYIYGIGKARAKEALEKTGINPA-------TRV--KDLTEAEVVRLRE 58 (126)
T ss_dssp CSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTT-------SBG--GGCCHHHHHHHHH
T ss_pred CCCEEEEEECCEECCCHHHHHHHHHHCCCCCC-------CCC--CCCCHHHHHHHHH
T ss_conf 99787876204348389999999998597966-------301--6399999999999
No 94
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=42.97 E-value=8.4 Score=15.01 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHH-HHHHHH
Q ss_conf 988886368503552334210035319-869850268589698999-999999
Q 537021.9.peg.7 806 CQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA-RHIMEA 856 (1033)
Q Consensus 806 i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~-~~Ive~ 856 (1033)
...|++.||++..++ ..+..+.++++ +.|-..|..|||=|.... |.|+..
T Consensus 63 ~~~~~~~Gi~l~~l~-~~~~iDl~iDGADeVd~~l~lIKGGGgallrEKiva~ 114 (224)
T 3kwm_A 63 TRKLKALGFDVVDLN-YAGEIDLYIDGADECNNHKELIKGGGAALTREKICVA 114 (224)
T ss_dssp HHHHHHTTCCBCCHH-HHCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCC-CCCEEEEEEECCHHHCCCCCEEECCCHHHHHHHHHHH
T ss_conf 999986289753613-3886699997703228775588316178999899999
No 95
>3ofo_K 30S ribosomal protein S11; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_K* 3iy8_K 2wwl_K 3ofp_K 3i1m_K 1vs7_K* 3e1a_C 3e1c_C 1vs5_K 3i1o_K 3i1q_K 3i1s_K 3i1z_K 3i21_K 3kc4_K 3or9_K 3ora_K 2qal_K* 1p6g_K 1p87_K ...
Probab=42.96 E-value=8.8 Score=14.85 Aligned_cols=27 Identities=37% Similarity=0.641 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHH---HHCCCCCHHHCC
Q ss_conf 344442046677655---440375633323
Q 537021.9.peg.7 375 GPGRGSGAGSVTAYA---LTITDIDPLRFS 401 (1033)
Q Consensus 375 GpGRGSAagSLVaY~---LgIT~VDPi~~~ 401 (1033)
||||-+|--.|..-= .-|+|+-|+.||
T Consensus 78 G~gr~~~ik~l~~~gikI~~I~D~T~~phn 107 (117)
T 3ofo_K 78 GPGRESTIRALNAAGFRITNITDVTPIPHN 107 (117)
T ss_dssp STTTTHHHHHHHTTTCCCCCEEECCCCCSS
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 887799999997589879999989999989
No 96
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=42.26 E-value=11 Score=14.08 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHCHHHHHHHC--------CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 56689881334331444764432--------9989999999978998899811651774999999999769
Q 537021.9.peg.7 4 YLEKSPSFVHLQVHSSYSLLEGA--------LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 (1033)
Q Consensus 4 ~~~~~~~FvhLh~hS~ySlldg~--------~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~g 66 (1033)
-|+-.+.|+-.|||=..+...|. ...++++++|++.|...+-++- .++...-+..+.|+++.
T Consensus 21 ~~~~~~~~iDi~~nlt~~~f~g~y~g~~~h~~Dl~~Vl~rA~~~gV~~ii~~g-~~~~~~~~a~~La~~~~ 90 (325)
T 3ipw_A 21 SMSMAQQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITS-GCLNDFKKAIEIINKYQ 90 (325)
T ss_dssp --CCCCCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC-CSHHHHHHHHHHHHHHG
T ss_pred CCCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHCC
T ss_conf 66566886899878899676786577647702699999999986999899923-99999999999998677
No 97
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=41.96 E-value=11 Score=14.04 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH---HCCC-CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 68988788632684130788976---2012-1101677878999998624999999999999999750001331
Q 537021.9.peg.7 694 QVMQIAQLLSGYSLSEADVLRRA---MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 (1033)
Q Consensus 694 Qvm~ia~~~ag~~~~ead~lRra---~~kk-~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~Fnk 763 (1033)
|...++..++|=.......+|.+ |..+ .....+.+...|.+-+.+.|++++..++++..++.+...-.|+
T Consensus 88 ~~~fl~~~~GGp~~Y~g~~m~~~H~~l~~~It~~~fd~~l~~l~~al~e~gv~~~~~~ei~~~l~~lr~~Ivn~ 161 (164)
T 1dly_A 88 QFAFLAYALGGASEWKGKDMRTAHKDLVPHLSDVHFQAVARHLSDTLTELGVPPEDITDAMAVVASTRTEVLNM 161 (164)
T ss_dssp HHHHHHHHTTSSSCCCSCCHHHHHTTCSSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHTTC
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999289988899888999763557989999999999999999983999999999999999999998189
No 98
>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ...
Probab=41.36 E-value=11 Score=13.98 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=34.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEE--ECCHHHHHHHHHHHHHH
Q ss_conf 8899811651774999999999769963899999985476643344565666677539999--56968999999999899
Q 537021.9.peg.7 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL--VSTAEGYQRLIELVSRM 119 (1033)
Q Consensus 42 ~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~~~~~~~~~~~lvlL--AkN~~Gy~nL~kL~S~a 119 (1033)
+-|-|.+.|- -|++..++|++-||+.|.- |-..+...... ...-+.+.+ +.+.+-|.|.-+++..+
T Consensus 3 ~kvLianrGe--iA~riira~relGi~tVav---~s~~D~~s~~v-------~~ADe~~~i~~~~~~~sYld~~~Ii~~a 70 (449)
T 2w70_A 3 DKIVIANRGE--IALRILRACKELGIKTVAV---HSSADRDLKHV-------LLADETVCIGPAPSVKSYLNIPAIISAA 70 (449)
T ss_dssp SEEEECCCHH--HHHHHHHHHHHHTCEEEEE---EEGGGTTCHHH-------HHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCCEEEE---CCHHHHCCCCH-------HHCCEEEECCCCCHHHHHCCHHHHHHHH
T ss_conf 4199989739--9999999999869939998---37044158897-------7798999848986242004899999999
Q ss_pred HH
Q ss_conf 73
Q 537021.9.peg.7 120 YL 121 (1033)
Q Consensus 120 ~~ 121 (1033)
..
T Consensus 71 ~~ 72 (449)
T 2w70_A 71 EI 72 (449)
T ss_dssp HH
T ss_pred HH
T ss_conf 88
No 99
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=40.93 E-value=11 Score=13.93 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=5.9
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 999999981898998
Q 537021.9.peg.7 199 QVVQLAYTHELPLVA 213 (1033)
Q Consensus 199 ~l~~lA~~~~iPlVa 213 (1033)
++++-+++.|+..|+
T Consensus 16 r~~r~~~~~gi~tv~ 30 (681)
T 3n6r_A 16 RVIKTARKMGISTVA 30 (681)
T ss_dssp HHHHHHGGGSCCBCC
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999981993999
No 100
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=40.67 E-value=11 Score=13.90 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHCCC--CCC--CCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 3055788899999851047--643--3444420466776554403756
Q 537021.9.peg.7 353 FSGYFLIVADFIQWAKKNN--IPV--GPGRGSGAGSVTAYALTITDID 396 (1033)
Q Consensus 353 f~~YFLiV~Div~~ak~~g--I~v--GpGRGSAagSLVaY~LgIT~VD 396 (1033)
+..||--+.++|.-++++| ++| -.|++=+|.=++||++.--..+
T Consensus 66 i~~~~~~~~~fI~~~~~~~~~VLVHC~~G~sRS~~vviaYLm~~~~~s 113 (160)
T 1yz4_A 66 IKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLG 113 (160)
T ss_dssp GGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 999999999999998743773676846678754999999999983999
No 101
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=40.22 E-value=12 Score=13.84 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.4
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999851047643
Q 537021.9.peg.7 361 ADFIQWAKKNNIPV 374 (1033)
Q Consensus 361 ~Div~~ak~~gI~v 374 (1033)
..+|+-|+++||.|
T Consensus 276 k~LV~~aH~~GI~V 289 (750)
T 1bf2_A 276 QAMVQAFHNAGIKV 289 (750)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCEE
T ss_conf 99999998779989
No 102
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni}
Probab=39.95 E-value=12 Score=13.81 Aligned_cols=58 Identities=14% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCC-EEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 898-899819767967888877997899999999987659868999943991158999999999998189899
Q 537021.9.peg.7 141 TEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212 (1033)
Q Consensus 141 ~eg-LIvlsg~~~g~i~~~l~~~~~~~a~~~l~~l~~~Fgd~~ylEl~~~~~~e~~~~~~l~~lA~~~~iPlV 212 (1033)
.++ ++.+|||.+|-+.-++ .++.+|++++--.+.++...+.-.....++|+.++++..
T Consensus 26 ~~~vvlglSGGVDSsv~a~L--------------a~~al~~~v~~v~~~~~~~~~~~~~~a~~la~~lgi~~~ 84 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATL--------------CKRALKENVFALLMPTQISNKANLEDALRLCADLNLEYK 84 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHH--------------HHHHHTTSEEEEECCSCCSSCHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCHHHHHHHHH--------------HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 98299978898899999999--------------998448717998578411000689999999998177600
No 103
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=39.55 E-value=9.9 Score=14.40 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCC-CCCHHHHHHHHHCC
Q ss_conf 999999998379999978999734824-79989999888676
Q 537021.9.peg.7 849 TARHIMEASADKPFDSLEDFCSRVDSK-KLNRRVLESLVFAG 889 (1033)
Q Consensus 849 ~~~~Ive~r~~g~f~sl~df~~rv~~~-~~nk~~le~Li~aG 889 (1033)
--..|.+.-+...|.+..++..+.++. ..-+..|+.|++.|
T Consensus 155 D~~~il~~~~~~g~vT~~~L~~~lgWs~~ra~~~Le~lv~~G 196 (234)
T 3cuq_A 155 DHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEG 196 (234)
T ss_dssp HHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 899999999846991699999997969999999999999689
No 104
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=39.43 E-value=12 Score=13.75 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=8.4
Q ss_pred HHHHHCCCCCHHH
Q ss_conf 6554403756333
Q 537021.9.peg.7 387 AYALTITDIDPLR 399 (1033)
Q Consensus 387 aY~LgIT~VDPi~ 399 (1033)
-|-+||+.+|=++
T Consensus 112 l~~~Gi~si~dL~ 124 (335)
T 2bcq_A 112 WYQQGFRSLEDIR 124 (335)
T ss_dssp HHHTTCCSHHHHH
T ss_pred HHHCCCCCHHHHH
T ss_conf 9981925699999
No 105
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=39.08 E-value=12 Score=13.71 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=32.9
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHH-HHHHHHH
Q ss_conf 988886368503552334210035319-869850268589698999-9999998
Q 537021.9.peg.7 806 CQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA-RHIMEAS 857 (1033)
Q Consensus 806 i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~-~~Ive~r 857 (1033)
...|++.||++..++ ..+..++.+++ +.|--.|..|||=|.... |.|+...
T Consensus 57 ~~~a~~~Gi~l~~~~-~~~~iDiaiDGaDevd~~l~liKGgGgal~rEKiva~~ 109 (219)
T 1o8b_A 57 TEKLKSLGIHVFDLN-EVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASV 109 (219)
T ss_dssp -----------CCGG-GCSCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHH-HCCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999987166656865-67876767517302102243564268999988899983
No 106
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=39.07 E-value=12 Score=13.71 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=31.7
Q ss_pred HHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 432998999999997899889981165177499999999976996
Q 537021.9.peg.7 24 EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 (1033)
Q Consensus 24 dg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIK 68 (1033)
++...++.+++.|++.|..||--- +|=|+=-.+|.++|.++||.
T Consensus 77 ~~yl~~~~i~~~a~~~~~~ai~pg-ygflse~~~fa~~~~~~g~~ 120 (1165)
T 2qf7_A 77 ESYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFVDACNKAGII 120 (1165)
T ss_dssp HHHHCHHHHHHHHHHHTCSEEECC-SSTTTTCHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHCCCEEECC-CCHHHCCHHHHHHHHHCCCE
T ss_conf 011599999999999691999888-34200599999999987998
No 107
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=39.05 E-value=12 Score=13.71 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHH------HHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 2998999999997899889981165177------4999999999769963899999
Q 537021.9.peg.7 26 ALSLNNILDKIAADQQPAIAITDTNNLF------SALEFSQKACAAGIQPIIGCQL 75 (1033)
Q Consensus 26 ~~~~e~LV~~A~~~G~~AiAITD~~nl~------Gav~F~~ackk~gIKPIiG~E~ 75 (1033)
..++++-++.|++.|+.+|-|.+.+... ..-++.+.++++||+++ +...
T Consensus 13 ~~~l~~~l~~aa~~G~~~iEl~~~~~~~~~~~~~~~~~l~~~~~~~gl~i~-~~~~ 67 (278)
T 1i60_A 13 NSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPL-ALNA 67 (278)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEE-EEEE
T ss_pred CCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEE-EEEC
T ss_conf 999999999999959799996767666001486539999999998099399-9836
No 108
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=38.68 E-value=12 Score=13.67 Aligned_cols=10 Identities=10% Similarity=0.581 Sum_probs=3.6
Q ss_pred CCCHHHHHHH
Q ss_conf 9698999999
Q 537021.9.peg.7 844 GVGTTTARHI 853 (1033)
Q Consensus 844 gvg~~~~~~I 853 (1033)
|||...++.+
T Consensus 32 Gvg~~~i~KL 41 (114)
T 1b22_A 32 GINANDVKKL 41 (114)
T ss_dssp TCSHHHHHHH
T ss_pred CCCHHHHHHH
T ss_conf 9999999999
No 109
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=38.61 E-value=12 Score=13.66 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCCEEEE-------ECC--------CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 899999999789988998-------116--------51774999999999769963899
Q 537021.9.peg.7 29 LNNILDKIAADQQPAIAI-------TDT--------NNLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 29 ~e~LV~~A~~~G~~AiAI-------TD~--------~nl~Gav~F~~ackk~gIKPIiG 72 (1033)
.++.++..|++|+.++=| .+. ..|.-.-+....|+++||+||+=
T Consensus 47 tkedI~~ik~~GfN~vRipisW~~~~~~~~~~~in~~~l~~~d~vId~a~~~Gi~viLd 105 (515)
T 3icg_A 47 THAMINKIKEAGFNTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIIN 105 (515)
T ss_dssp CHHHHHHHHHHTCCEEEECCCCTTSBCCTTTCCBCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 69999999987998899701289807888887449999999999999999789999996
No 110
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=38.53 E-value=8.2 Score=15.10 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 02685896989999999998379999978999
Q 537021.9.peg.7 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 (1033)
Q Consensus 838 Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~ 869 (1033)
.|..|+|||+..+..|++. |.|+.++.
T Consensus 25 ~L~~IpGIG~k~ak~Ll~~-----F~si~~i~ 51 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKY-----MGGLQGLR 51 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHH-----HSCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH-----HCCHHHHH
T ss_conf 2656999329999999999-----29949998
No 111
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=38.28 E-value=12 Score=13.62 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=12.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899999851047643344442
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGPGRGS 380 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGpGRGS 380 (1033)
|.++|++|+++|++|- -||.
T Consensus 51 V~~~v~~A~~~~~~v~-~rgg 70 (459)
T 2bvf_A 51 VAKSVRYACDNGLEIS-VRSG 70 (459)
T ss_dssp HHHHHHHHHHHTCCEE-EESS
T ss_pred HHHHHHHHHHCCCEEE-EECC
T ss_conf 9999999998798299-9889
No 112
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=37.83 E-value=12 Score=13.57 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=29.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHH-HHHHHH
Q ss_conf 9988886368503552334210035319-869850268589698999-999999
Q 537021.9.peg.7 805 FCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA-RHIMEA 856 (1033)
Q Consensus 805 ~i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~-~~Ive~ 856 (1033)
--..|+++||++.+.+ .....++.+++ +.|-..|..|||-|.... |.|+..
T Consensus 60 t~~~a~~~gi~~~~~~-~~~~iDv~iDGaDevd~~l~liKGGGGal~rEKivA~ 112 (229)
T 1lk5_A 60 AKLLAIEHDIPIASLD-QVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEY 112 (229)
T ss_dssp HHHHHHHTTCCBCCGG-GCSCEEEEEECCSEECTTCCEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCC-CCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999997799454412-2564117841624434005767620067888999998
No 113
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7}
Probab=37.82 E-value=12 Score=13.57 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=32.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHH-HHHHHHH
Q ss_conf 99988886368503552334210035319-869850268589698999-9999998
Q 537021.9.peg.7 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA-RHIMEAS 857 (1033)
Q Consensus 804 ~~i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~-~~Ive~r 857 (1033)
..-.+|+++||++..++ .....++.+++ +.|-..|..|||=|.... |.|+...
T Consensus 66 ~T~~~a~~~Gi~v~~l~-~~~~iDv~iDGADEvd~~l~lIKGGGgal~rEKivA~~ 120 (244)
T 2f8m_A 66 DTELKARKLGIPLTTLE-KHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASS 120 (244)
T ss_dssp HHHHHHHHHTCCBCCCC-SSCCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCCH-HCCCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 99999988599711702-35731168725630035824120786201678899960
No 114
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=37.57 E-value=13 Score=13.54 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHH-------HHHHHHHHHHCCCCEEEEEEE
Q ss_conf 447644329989999999978998899811651774-------999999999769963899999
Q 537021.9.peg.7 19 SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS-------ALEFSQKACAAGIQPIIGCQL 75 (1033)
Q Consensus 19 ~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~G-------av~F~~ackk~gIKPIiG~E~ 75 (1033)
.||+. =-.+.++.++.|++.|+.+|-|... .+.. .-++.+++.+.||+. .++..
T Consensus 29 ~~tl~-~~~~lee~l~~aae~GfdgVEl~~~-~~~~~~~~~~~~~~l~~~l~~~GL~i-~~i~~ 89 (296)
T 2g0w_A 29 SYTLG-TEVSFPKRVKVAAENGFDGIGLRAE-NYVDALAAGLTDEDMLRILDEHNMKV-TEVEY 89 (296)
T ss_dssp GGGGT-TTSCHHHHHHHHHHTTCSEEEEEHH-HHHHHHHTTCCHHHHHHHHHHTTCEE-EEEEC
T ss_pred EEECC-CCCCHHHHHHHHHHHCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHCCCEE-EEEEC
T ss_conf 88878-9999999999999969799997453-23000446899999999999719979-99865
No 115
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=37.26 E-value=13 Score=13.50 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHCCCEEEE-CCCCCCCHH
Q ss_conf 9999999999818989980-883007878
Q 537021.9.peg.7 196 RESQVVQLAYTHELPLVAT-NNSLFLSEE 223 (1033)
Q Consensus 196 ~~~~l~~lA~~~~iPlVaT-ndv~Y~~~~ 223 (1033)
....+..+...+++|.+.| |+..|...+
T Consensus 48 v~~~l~~~~~~~g~p~i~sDnG~~f~s~~ 76 (164)
T 1c6v_A 48 TALFLLKLAGRWPITHLHTDNGANFASQE 76 (164)
T ss_dssp HHHHHHHHHTTSCCCEEECCCCSSTTSSH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 99999999986498289994997500188
No 116
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=37.09 E-value=13 Score=13.48 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=12.0
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 539999569689999999998997
Q 537021.9.peg.7 97 PSIVLLVSTAEGYQRLIELVSRMY 120 (1033)
Q Consensus 97 ~~lvlLAkN~~Gy~nL~kL~S~a~ 120 (1033)
+.+++..-+-.=|..+.+.-..++
T Consensus 76 ~~~~~~vatg~~~~d~~~~~~aa~ 99 (763)
T 3kp1_A 76 PVITTEIASGRFEDDIRRMRMAAW 99 (763)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 769999833762878999999987
No 117
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=36.92 E-value=13 Score=13.46 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=24.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 26858969899999999983799999789997348247998999988
Q 537021.9.peg.7 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 (1033)
Q Consensus 839 l~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~~~~~nk~~le~L 885 (1033)
|..|+|||.+.+..|+. .|.|+.+++. .....|..+
T Consensus 6 L~~IPGIg~~~~~~Ll~-----~fgSi~~l~~------as~eeL~~v 41 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH-----HVKNIAELAA------LSQDELTSI 41 (63)
T ss_dssp HHTSTTCCHHHHHHHHH-----HCSSHHHHHT------CCHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHH-----HCCCHHHHHH------CCHHHHHHC
T ss_conf 85299988999999999-----8679999987------999999878
No 118
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=36.75 E-value=13 Score=13.44 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=6.5
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999818989980
Q 537021.9.peg.7 200 VVQLAYTHELPLVAT 214 (1033)
Q Consensus 200 l~~lA~~~~iPlVaT 214 (1033)
+.++.+++++++.+.
T Consensus 73 lk~~l~~~gL~v~s~ 87 (290)
T 2zvr_A 73 VKILSEELNLPICAI 87 (290)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999999839908998
No 119
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=36.68 E-value=13 Score=13.43 Aligned_cols=27 Identities=19% Similarity=0.527 Sum_probs=12.8
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf 58969899999999983799999789997348
Q 537021.9.peg.7 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873 (1033)
Q Consensus 842 Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv~ 873 (1033)
|+|||++++..++++ |.|+++.+..++
T Consensus 208 V~GiG~KtA~kLl~~-----ygsle~i~~~~~ 234 (290)
T 1exn_A 208 VEGIGAKRGYNIIRE-----FGNVLDIIDQLP 234 (290)
T ss_dssp CTTCCHHHHHHHHHH-----HCSHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHH-----HCCHHHHHHHHH
T ss_conf 998589999999987-----389999998777
No 120
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=36.22 E-value=13 Score=13.38 Aligned_cols=53 Identities=9% Similarity=-0.049 Sum_probs=38.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHH----------HHHHHHHHHHHCCCCEEE
Q ss_conf 44764432998999999997899889981165177----------499999999976996389
Q 537021.9.peg.7 19 SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF----------SALEFSQKACAAGIQPII 71 (1033)
Q Consensus 19 ~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~----------Gav~F~~ackk~gIKPIi 71 (1033)
-||-..+-.++++.++.|+++|+.+|-|+-.+.-+ .+-++.+.++++|++...
T Consensus 7 ~~~~~~~dlple~~l~~aa~~G~~gIEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 69 (340)
T 2zds_A 7 LFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWA 69 (340)
T ss_dssp EESGGGTTSCHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 121567899899999999982999899835777766000007978999999999982996899
No 121
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=36.06 E-value=13 Score=13.36 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=36.3
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 476443299899999999789988998116517749999999997699638
Q 537021.9.peg.7 20 YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 (1033)
Q Consensus 20 ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPI 70 (1033)
+|++..-.++++.++.|++.|+.+|-|-.... .-.-+..+.+++.|++..
T Consensus 16 ~~~~~~~~pl~e~l~~aae~GfdgVEl~~~~~-~~~~~l~~~l~~~gl~~~ 65 (269)
T 3ngf_A 16 LSTMFNEVPFLERFRLAAEAGFGGVEFLFPYD-FDADVIARELKQHNLTQV 65 (269)
T ss_dssp TTTSCTTSCHHHHHHHHHHTTCSEEECSCCTT-SCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCC-CCHHHHHHHHHHCCCCEE
T ss_conf 14334789999999999996999999898887-899999999998399669
No 122
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=35.95 E-value=8 Score=15.18 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHCCCEE
Q ss_conf 999999999998189899
Q 537021.9.peg.7 195 YRESQVVQLAYTHELPLV 212 (1033)
Q Consensus 195 ~~~~~l~~lA~~~~iPlV 212 (1033)
.+++.+.+.+++.++.+.
T Consensus 28 ~i~~~~~~~a~~~g~~l~ 45 (149)
T 2uyg_A 28 ELEALCEAWGAELGLGVV 45 (149)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 999999999997599478
No 123
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=35.93 E-value=13 Score=13.34 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCC--CEEECCCHHHHH------HHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 365687899999998303802--155422077877------88999999975279988988654310145
Q 537021.9.peg.7 421 DFCQDRRDEVIRYVQNKYGHE--RVAQIITFGSLQ------AKAALRDVGRALQMPYSQVDRLCKLIPND 482 (1033)
Q Consensus 421 Df~~~~R~~vi~y~~~kyG~~--~va~i~t~~t~~------~k~aird~~r~~g~~~~~~~~~~~~i~~~ 482 (1033)
-|+++.+ +.++-+..||..+ +-|.|.-..-.+ ...|++.+|+.+|+|..++..++..-+..
T Consensus 2 ~~~~~~~-~~i~~ii~~Yp~~~~r~all~~L~~iQ~~~GyIp~~al~~iA~~l~v~~a~V~~vatFY~~f 70 (181)
T 3i9v_2 2 GFFDDKQ-DFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYY 70 (181)
T ss_dssp -CTTTCH-HHHHHHHTTSCTTCCGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSC
T ss_pred CCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 9888899-99999998788864776999999999998299099999999999892999999999762502
No 124
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=35.92 E-value=13 Score=13.34 Aligned_cols=15 Identities=0% Similarity=-0.090 Sum_probs=6.4
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 999999981898998
Q 537021.9.peg.7 199 QVVQLAYTHELPLVA 213 (1033)
Q Consensus 199 ~l~~lA~~~~iPlVa 213 (1033)
.+.++...+||....
T Consensus 82 ~~~~~~~~~gI~~~~ 96 (238)
T 1c0m_A 82 STREWLARWGIAHTT 96 (238)
T ss_dssp HHHHHHHHHTCEEEE
T ss_pred HHHHHHHHCEEEEEE
T ss_conf 787765540068887
No 125
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus}
Probab=35.64 E-value=13 Score=13.31 Aligned_cols=131 Identities=12% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHH----HHHHCCCHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHHHC-C
Q ss_conf 850269667334103355300125689887----88632684130----78897620121101677878999998624-9
Q 537021.9.peg.7 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIA----QLLSGYSLSEA----DVLRRAMGKKIKEEMDKQKERFISGASKN-G 740 (1033)
Q Consensus 670 ~~~~~hp~l~~iL~~T~Gv~vyQEQvm~ia----~~~ag~~~~ea----d~lRra~~kk~~~~~~~~~~~f~~g~~~~-g 740 (1033)
++..-+|.+...=.+-.|++++-+|.+-=. .--||+|+.-. +.+|+|+.-=+++.+..+-+.=++..+.+ |
T Consensus 5 ~W~~~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~Il~Kr~~fr~aF~~Fd~~~vA~~~e~die~Ll~d~~ 84 (186)
T 2jg6_A 5 AFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPN 84 (186)
T ss_dssp TTTCCCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTT
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCC
T ss_conf 89999838998885268986888799999999999853178999999999999999769999997789999998852720
Q ss_pred CC--HHH-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CCCCC
Q ss_conf 99--999-------9999999997500013310147888999999999973026667775100------------23542
Q 537021.9.peg.7 741 IS--KTI-------AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL------------EMDNV 799 (1033)
Q Consensus 741 ~~--~~~-------a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~------------~~~~~ 799 (1033)
+= +.. |..+-++-+.|+ +| ..|..+..+. .+...
T Consensus 85 IIRnr~KI~Avi~NA~~~~~i~~e~g--SF-----------------------~~ylw~fv~~~pi~~~~~~~~~~p~~t 139 (186)
T 2jg6_A 85 IVHHRKKLEAIVNQAQGYLKIEQAYG--SF-----------------------SKFLWSYVNGKPKDLQYEHASDRITVD 139 (186)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHS--CH-----------------------HHHHHGGGTTSCEECCCCSGGGCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CH-----------------------HHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 56619999999999999999888309--99-----------------------999998547888655656603567899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 02589998888636850355233421
Q 537021.9.peg.7 800 EKIKKFCQDARQFNIQIMPPSVNTPC 825 (1033)
Q Consensus 800 ~~~~~~i~e~~~~gi~vl~PdIN~S~ 825 (1033)
..-..+.+++|++|.+..+|-+=.|.
T Consensus 140 ~~s~~isk~LKk~GFkfvGpt~~ysf 165 (186)
T 2jg6_A 140 DTATQLSKDLKQYGFKFLGPVTVFSF 165 (186)
T ss_dssp HHHHHHHHHHHTTTCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEECCCHHHHHH
T ss_conf 89999999998678744385799999
No 126
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=35.14 E-value=14 Score=13.25 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHHCHH-HHHHHCCCHHHHHHHH-----------HHCCCCEEEEE
Q ss_conf 6689881334331444-7644329989999999-----------97899889981
Q 537021.9.peg.7 5 LEKSPSFVHLQVHSSY-SLLEGALSLNNILDKI-----------AADQQPAIAIT 47 (1033)
Q Consensus 5 ~~~~~~FvhLh~hS~y-Slldg~~~~e~LV~~A-----------~~~G~~AiAIT 47 (1033)
|+|+..+=+||+.+.- |-.+|......++++- +++|+.+|=|+
T Consensus 1 ~~~~~~~Ye~~~~~f~~~~~~~~G~~~g~~~~ldyl~~~~~~~i~~LGv~~I~L~ 55 (488)
T 1wza_A 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLM 55 (488)
T ss_dssp CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEEC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCEEEEC
T ss_conf 9877179999674104899998649899997464431013336760785679979
No 127
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=35.01 E-value=14 Score=13.23 Aligned_cols=68 Identities=6% Similarity=0.130 Sum_probs=33.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEE-ECCHHHHHHHHHHHHHHH
Q ss_conf 8899811651774999999999769963899999985476643344565666677539999-569689999999998997
Q 537021.9.peg.7 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSRMY 120 (1033)
Q Consensus 42 ~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~~~~~~~~~~~lvlL-AkN~~Gy~nL~kL~S~a~ 120 (1033)
+-|-|...|-. +++..++|++-||+.|.= |-..+.... .... .-..+++ ....+-|-|.-+++..+.
T Consensus 3 ~kiLianrGei--A~riira~~elGi~tVaV---~s~~D~~a~----~~~~---ADe~~~ig~~~~~sYl~~~~ii~ia~ 70 (451)
T 1ulz_A 3 NKVLVANRGEI--AVRIIRACKELGIPTVAI---YNEVESTAR----HVKL---ADEAYMIGTDPLDTYLNKQRIINLAL 70 (451)
T ss_dssp SSEEECCCHHH--HHHHHHHHHHHTCCEEEE---ECGGGTTCH----HHHH---SSEEEECCSSTTHHHHCHHHHHHHHH
T ss_pred CEEEEECCCHH--HHHHHHHHHHCCCEEEEE---CCCHHHCCC----CHHH---CCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 33999897199--999999999859969998---684564588----9778---88989879977887664899999999
Q ss_pred H
Q ss_conf 3
Q 537021.9.peg.7 121 L 121 (1033)
Q Consensus 121 ~ 121 (1033)
.
T Consensus 71 ~ 71 (451)
T 1ulz_A 71 E 71 (451)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 128
>1tvk_A Tubulin alpha chain; epothilone, taxol, ligand interactions, cell cycle, structural protein; HET: GDP GTP EP; 2.89A {Bos taurus} SCOP: c.32.1.1 d.79.2.1 PDB: 1tub_A* 1jff_A* 2wbe_A* 3dco_A* 3edl_A* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1sa0_A* 1sa1_A* 3edl_F* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1z2b_A* ...
Probab=34.93 E-value=9.3 Score=14.63 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 389999988778989860630557888999998510476433444420466776554403
Q 537021.9.peg.7 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 (1033)
Q Consensus 334 ~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT 393 (1033)
.+++.+|+.+|++- -+--+.|++.+ . +|=|=||+-||+++.+|.-.
T Consensus 115 ~d~i~e~iRkevE~---cD~l~gf~~~h---------S--l~GGTGSGlGs~i~e~L~d~ 160 (440)
T 1tvk_A 115 IDLVLDRIRKLADQ---CTGLQGFSVFH---------S--FGGGTGSGFTSLLMERLSVD 160 (440)
T ss_dssp HHHHHHHHHHHHHS---SSSEEEEEEEC---------C--TTSSTTTHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH---CCCCCCEEEEE---------C--CCCCCCCCHHHHHHHHHHHH
T ss_conf 89999999999995---88867667884---------2--57877662899999998876
No 129
>2h9d_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase; 1.95A {Pseudomonas aeruginosa PAO1} SCOP: a.130.1.1 PDB: 3hgw_C 3hgx_A* 2h9c_A
Probab=34.80 E-value=14 Score=13.21 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 689887886326841307889762012110167787899999862499999999999999975
Q 537021.9.peg.7 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 (1033)
Q Consensus 694 Qvm~ia~~~ag~~~~ead~lRra~~kk~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f 756 (1033)
+=|.++..+|-+-.... .+ -+++-.+++-+....-|.+.|++++.++.||..|-..
T Consensus 30 ~R~~l~~~I~~~K~~~~-~v------~d~~Re~~vl~~~~~~a~~~~l~~~~i~~i~~~ii~~ 85 (101)
T 2h9d_A 30 RRMDYVKAASRFKASEA-AI------PAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHW 85 (101)
T ss_dssp HHHHHHHHTTTC-----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999876678-98------8869999999999998775796999999999999999
No 130
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiotic biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=34.32 E-value=8.5 Score=14.95 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 85104764334444204667765544037
Q 537021.9.peg.7 366 WAKKNNIPVGPGRGSGAGSVTAYALTITD 394 (1033)
Q Consensus 366 ~ak~~gI~vGpGRGSAagSLVaY~LgIT~ 394 (1033)
|+...||.=-|+=|||+++|.+|+..--.
T Consensus 223 f~p~~Gi~EDpaTGSa~~aLa~yl~~~~~ 251 (307)
T 1qya_A 223 FSPAIGIVEDPVTGNANGPMGAWLVHHNV 251 (307)
T ss_dssp EEGGGTEEEESSCHHHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 42668973646246879999999997187
No 131
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=34.21 E-value=14 Score=13.14 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=32.7
Q ss_pred HHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 44329989999999978998899811651774999999999769963
Q 537021.9.peg.7 23 LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 (1033)
Q Consensus 23 ldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKP 69 (1033)
.++...++.+++.|++.|..||--+ .|-|+=-.+|.++|.++||+.
T Consensus 60 ~~~yl~~~~i~~~a~~~~~~ai~pg-ygflsen~~~a~~~~~~gi~~ 105 (1150)
T 3hbl_A 60 AESYLNIERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKF 105 (1150)
T ss_dssp TGGGTCHHHHHHHHHHTTCSEEECT-TTTSTTCHHHHHHHHHTTCEE
T ss_pred HHCCCCHHHHHHHHHHHCCCEEECC-CCCCCCCHHHHHHHHHCCCEE
T ss_conf 3211599999999999792999658-440324999999999879979
No 132
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: NAD 1PE; 2.15A {Escherichia coli K12}
Probab=34.19 E-value=14 Score=13.16 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 9999999998189899808830078788999987
Q 537021.9.peg.7 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 (1033)
Q Consensus 197 ~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~i 230 (1033)
.+..++.|+++|+-+|+..+++..-.--+.+..+
T Consensus 120 ~~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~a 153 (385)
T 2g8y_A 120 MALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQC 153 (385)
T ss_dssp HHHHHHHHHHHSEEEEEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 9999999997298379756878755427999999
No 133
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=34.05 E-value=12 Score=13.69 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=22.7
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 510476433444420466776554403756
Q 537021.9.peg.7 367 AKKNNIPVGPGRGSGAGSVTAYALTITDID 396 (1033)
Q Consensus 367 ak~~gI~vGpGRGSAagSLVaY~LgIT~VD 396 (1033)
....|+.-.|+=|||+++|.+|+......+
T Consensus 218 ~~~~G~~Ed~atGsa~~~la~~l~~~~~~~ 247 (299)
T 3edn_A 218 SAYAGTIEDPVTGTASGVMGAYYATYVEKD 247 (299)
T ss_dssp CTTSSCSEESSCHHHHHHHHHHHHHHTCCC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 013775367475488999999999870767
No 134
>1v8d_A Hypothetical protein (TT1679); X-RAY craytallography, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.16A {Thermus thermophilus} SCOP: c.140.1.1
Probab=34.05 E-value=11 Score=14.14 Aligned_cols=73 Identities=16% Similarity=0.044 Sum_probs=49.6
Q ss_pred CCCEEEECCCCCCHHHHHH--HCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHH---HHHHHHHCCCEEEE
Q ss_conf 8988998197679678888--77997899999999987659-868999943991158999999---99999818989980
Q 537021.9.peg.7 141 TEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVAT 214 (1033)
Q Consensus 141 ~egLIvlsg~~~g~i~~~l--~~~~~~~a~~~l~~l~~~Fg-d~~ylEl~~~~~~e~~~~~~l---~~lA~~~~iPlVaT 214 (1033)
..|-|+..||..|++.-.. ..+..+.++..+..+.++.. ..+|+-+|.- +.+|..| .+.|+++++..|..
T Consensus 61 ~~G~i~VvGcSTSEV~G~~IGt~ss~eva~~I~~~l~~~~~~~gi~LA~QcC----EHLNRALvVEr~~a~~~~lE~V~V 136 (235)
T 1v8d_A 61 APGSLFVLGGSTSEVLGERVGTRPSLEAAHAVLEGLLPPLLERGVHVAVQAC----EHLNRALVVERETARAFGKEEVAV 136 (235)
T ss_dssp CTTCEEEEEECHHHHHC----CCCCHHHHHHHHHHHHHHHHTTTCEEEEECC----GGGTTCEEEEHHHHHHTTCCEEEC
T ss_pred CCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECH----HHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9998899960367636763677682999999999999998652957998455----665678886297697749717998
Q ss_pred CCC
Q ss_conf 883
Q 537021.9.peg.7 215 NNS 217 (1033)
Q Consensus 215 ndv 217 (1033)
-.+
T Consensus 137 vP~ 139 (235)
T 1v8d_A 137 FPH 139 (235)
T ss_dssp BCB
T ss_pred ECC
T ss_conf 647
No 135
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=33.65 E-value=14 Score=13.07 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=14.0
Q ss_pred HHHHCCCCHHHHHHHH-HHH
Q ss_conf 2685896989999999-998
Q 537021.9.peg.7 839 LAAIKGVGTTTARHIM-EAS 857 (1033)
Q Consensus 839 l~~Ikgvg~~~~~~Iv-e~r 857 (1033)
|+.|+|||.++|+.|+ |-+
T Consensus 109 L~~vpGIGkKtAerIilELk 128 (191)
T 1ixr_A 109 LTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HTTSTTCCHHHHHHHHHHHT
T ss_pred HHCCCCCCHHHHHHHHHHHH
T ss_conf 50188846889999999998
No 136
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; phosphoinositide 3-kinase, PI3K, class III PI3K, autophagy, transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=33.58 E-value=13 Score=13.49 Aligned_cols=45 Identities=33% Similarity=0.523 Sum_probs=26.5
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCC
Q ss_conf 32135654178999999998874025434332344358899876201410122114
Q 537021.9.peg.7 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 (1033)
Q Consensus 569 ~K~D~Lgl~~L~~i~~~~~~i~~~~~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~e 624 (1033)
+.-|-|-+-.+++++..++ +.|. |+.- .+|..+..|...|+-|+-
T Consensus 450 lRqD~l~~q~~~~m~~~~~---~~~~--~l~~------~~Y~v~~~~~~~G~ie~v 494 (696)
T 2x6h_A 450 LRQDQLILQMITLMDKLLR---RENL--DLKL------TPYKVLATSSKHGFLQYV 494 (696)
T ss_dssp THHHHHHHHHHHHHHHHHH---HTTC--CCCC------CCCCEEESSTTCEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHH---HCCC--CCCC------CCCEEEECCCCCEEEEEC
T ss_conf 1078999999999999998---6587--7645------563377548984169971
No 137
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=33.45 E-value=14 Score=13.05 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=5.4
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9988886368503
Q 537021.9.peg.7 805 FCQDARQFNIQIM 817 (1033)
Q Consensus 805 ~i~e~~~~gi~vl 817 (1033)
.+.||+++||++.
T Consensus 166 AI~EA~kl~IPvI 178 (253)
T 3bch_A 166 PLTEASYVNLPTI 178 (253)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHHCCCCEE
T ss_conf 7677876499779
No 138
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=33.24 E-value=14 Score=13.02 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=9.9
Q ss_pred HHHHHHHHHHCCCCCHHH
Q ss_conf 466776554403756333
Q 537021.9.peg.7 382 AGSVTAYALTITDIDPLR 399 (1033)
Q Consensus 382 agSLVaY~LgIT~VDPi~ 399 (1033)
|-.| |-.||+.++=|+
T Consensus 115 a~~l--~~~Gi~si~dL~ 130 (360)
T 2ihm_A 115 ANRW--YQEGLRTLDELR 130 (360)
T ss_dssp HHHH--HHTTCCSHHHHH
T ss_pred HHHH--HHCCCCCHHHHH
T ss_conf 9999--983988799998
No 139
>2vcc_A Alpha-N-acetylglucosaminidase; GH89, naGlu, sanfilippo disease, hydrolase, mucopolysaccharidosis, family 89 glycoside hydrolase; 2.0A {Clostridium perfringens} PDB: 2vc9_A* 2vcb_A* 2vca_A
Probab=33.13 E-value=14 Score=13.01 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---CCCCCCCCCCHHHHHCCHHHHHH
Q ss_conf 878999999983038021554220778778899999997527998898865431---01458982443445229887886
Q 537021.9.peg.7 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL---IPNDPAHPVSLQAIADDSRFREA 501 (1033)
Q Consensus 425 ~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~ 501 (1033)
+|=++-|+++- --|-+.+- .+ .+--+.-++|=+-||++.++++..=-. .||..=.. +..+
T Consensus 288 ~rWEreIDWMA-L~GINlpL---A~--~GqEaVW~~v~~~~Glt~~Ei~~ff~GPAflaW~rMgN-----------l~gw 350 (891)
T 2vcc_A 288 DQYEEFLDWCA-MNGVNLVL---DI--IGQEEVLRRTLNEFGYSDEEVKEFISGPAYFAWFYMQN-----------MTGF 350 (891)
T ss_dssp HHHHHHHHHHH-HTTCCEEE---CC--TTHHHHHHHHHGGGTCCHHHHHHHSCCTTCHHHHHTTS-----------CCST
T ss_pred HHHHHHHHHHH-HHCCCCCC---CC--CCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCC-----------CCCC
T ss_conf 99999999997-70787114---02--02499999999983999899998657941167786177-----------4547
Q ss_pred H--HCCCCCHHHHHHHHHHHHHHHCCCCCC-----CEEEECCCCHHHHEEC
Q ss_conf 4--307420268898720112210024474-----4033525666662001
Q 537021.9.peg.7 502 R--LADPSVDRLLEISQKLEGLYRHASTHA-----AGIVIGDRPLSQLVPM 545 (1033)
Q Consensus 502 ~--~~~~~~~~~~~~a~~leg~~r~~~~Ha-----~Gvvi~~~~l~~~~p~ 545 (1033)
. ....-...=.++.++|....|.+|++| +|.| |..+.+.-|-
T Consensus 351 gGPLp~~W~~~q~~LQkkIl~RmReLGM~PVLPaFaG~V--P~~~~~~~P~ 399 (891)
T 2vcc_A 351 GGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGMV--PRDFKEKNQE 399 (891)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHHHHHTCEEEEECCCCEE--CTTHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CHHHHHHCCC
T ss_conf 899999999999999999999999849964165446878--3778830999
No 140
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=32.78 E-value=15 Score=12.96 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.0
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998303
Q 537021.9.peg.7 428 DEVIRYVQNKY 438 (1033)
Q Consensus 428 ~~vi~y~~~ky 438 (1033)
+++.+.+.+.|
T Consensus 255 ~~~~~~~~~~~ 265 (283)
T 2ww4_A 255 RQVLEQAPEWL 265 (283)
T ss_dssp HHHHHHCCC-C
T ss_pred HHHHHHCCCCC
T ss_conf 99998640407
No 141
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=32.56 E-value=15 Score=12.94 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 68988788632684130788976201--2110167787899999862499999999999999975000133101478889
Q 537021.9.peg.7 694 QVMQIAQLLSGYSLSEADVLRRAMGK--KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 (1033)
Q Consensus 694 Qvm~ia~~~ag~~~~ead~lRra~~k--k~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~ 771 (1033)
|=|.++..+|. +.+.-|. .+++-.+++.+....-+...|++++.++.||..|-..+
T Consensus 27 ~R~~l~~~I~~--------~K~~~~~~i~dp~RE~~vl~~~~~~a~~~gl~~~~i~~if~~ii~~s-------------- 84 (109)
T 1ecm_A 27 ERRELAVEVGK--------AKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDS-------------- 84 (109)
T ss_dssp HHHHHHHHHHH--------HHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHH--------HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--------------
T ss_conf 99999999999--------88875998522999999999999871158959999999999999999--------------
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999973
Q 537021.9.peg.7 772 ISYQTAWMKTH 782 (1033)
Q Consensus 772 ~~y~~aylK~~ 782 (1033)
..+|..+++.|
T Consensus 85 ~~~Q~~~~~~~ 95 (109)
T 1ecm_A 85 VLTQQALLQQH 95 (109)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
T ss_conf 99999999987
No 142
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
Probab=31.95 E-value=15 Score=12.86 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=19.2
Q ss_pred CCCHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCEE
Q ss_conf 881334331444764432998999999997899889
Q 537021.9.peg.7 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAI 44 (1033)
Q Consensus 9 ~~FvhLh~hS~ySlldg~~~~e~LV~~A~~~G~~Ai 44 (1033)
|-|+-.|+|-+.| ..+|+++.+.+...|..++
T Consensus 89 PGlID~H~Hie~s----~~~p~~~a~~al~~GvTTv 120 (608)
T 3nqb_A 89 PGLIDTHMHIESS----MITPAAYAAAVVARGVTTI 120 (608)
T ss_dssp ECEEEEEECGGGG----TSCHHHHHHHHHTTTEEEE
T ss_pred CCCEEEEECCCCC----CCCHHHHHHHHHHCCEEEE
T ss_conf 0711301587753----6799999999981893899
No 143
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A
Probab=31.92 E-value=15 Score=12.86 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8899999997527998898865
Q 537021.9.peg.7 454 AKAALRDVGRALQMPYSQVDRL 475 (1033)
Q Consensus 454 ~k~aird~~r~~g~~~~~~~~~ 475 (1033)
.|.=||.+||.||+|...+++-
T Consensus 165 ~K~EVR~la~~LGlP~~i~~K~ 186 (308)
T 2dpl_A 165 YKDEVRELAKFLGLPEKIYNRM 186 (308)
T ss_dssp CHHHHHHHHHHTTCCHHHHTCC
T ss_pred CHHHHHHHHHHHCCCHHHHCCC
T ss_conf 5699999999809998992889
No 144
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=31.82 E-value=11 Score=14.12 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=24.1
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 85104764334444204667765544037563
Q 537021.9.peg.7 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 (1033)
Q Consensus 366 ~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDP 397 (1033)
|+...||.--|+=|||+++|.+|+......|.
T Consensus 215 F~p~~Gi~EDpaTGSaa~ala~yl~~~~~~~~ 246 (300)
T 1ym5_A 215 FAPVINVYEDPVCGSGSVALARYLQEVYKFEK 246 (300)
T ss_dssp EEGGGTEEEESSCHHHHHHHHHHHHHHHCCSS
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 41578863376632668999999997358997
No 145
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=31.56 E-value=13 Score=13.37 Aligned_cols=20 Identities=0% Similarity=-0.094 Sum_probs=13.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899999851047643344442
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGPGRGS 380 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGpGRGS 380 (1033)
|..+|++|++++|+|=| ||+
T Consensus 58 v~~iv~~a~~~~ipv~p-rGg 77 (571)
T 1f0x_A 58 LWRVLKACVTADKIILM-QAA 77 (571)
T ss_dssp HHHHHHHHHHTTCEEEE-ESS
T ss_pred HHHHHHHHHHCCCEEEE-ECC
T ss_conf 99999999987986999-789
No 146
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=31.53 E-value=15 Score=12.81 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=40.1
Q ss_pred CHHHHHHHCC--CHHHHHHHHHHCCCCEEEEEC--CCHHHH--HHHHHHHHHHCCCCEE
Q ss_conf 4447644329--989999999978998899811--651774--9999999997699638
Q 537021.9.peg.7 18 SSYSLLEGAL--SLNNILDKIAADQQPAIAITD--TNNLFS--ALEFSQKACAAGIQPI 70 (1033)
Q Consensus 18 S~ySlldg~~--~~e~LV~~A~~~G~~AiAITD--~~nl~G--av~F~~ackk~gIKPI 70 (1033)
+-||+.+.+. .+++.++++++.|+.+|=|.- .....+ +-++-+...++|++..
T Consensus 18 ~lys~~~~~~~~d~~~~L~~~~e~G~~~IEl~~~~~~~~~~~~~~elk~~l~~~gL~i~ 76 (303)
T 3l23_A 18 QIYSLSQELYKGDVAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKII 76 (303)
T ss_dssp EGGGGGGGGGSSCHHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 71422310114999999999999599989988877766689999999999998799755
No 147
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase, inactive mutant, pentasaccharide; HET: XYP; 2.0A {Thermobacillus xylanilyticus} PDB: 2vrk_A
Probab=31.44 E-value=15 Score=12.80 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCCEEEE-----EC--------------------------CCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999789988998-----11--------------------------65177499999999976996389999
Q 537021.9.peg.7 30 NNILDKIAADQQPAIAI-----TD--------------------------TNNLFSALEFSQKACAAGIQPIIGCQ 74 (1033)
Q Consensus 30 e~LV~~A~~~G~~AiAI-----TD--------------------------~~nl~Gav~F~~ackk~gIKPIiG~E 74 (1033)
.++++..+++|.+.+=. +| ..|-+|.-+|.+-|++.|-+|++++-
T Consensus 54 ~d~~~~lk~l~~~~lR~PGGn~~~~y~W~~~igp~~~R~~~~~~~w~~~~~~~~~g~def~~~~~~~ga~~~~~vn 129 (496)
T 2vrq_A 54 NDVLEALKQMKIPVLRWPGGCFADEYHWKDGVGPREKRKRMVNTHWGGVIENNHFGTHEFMMLCELLGCEPYISGN 129 (496)
T ss_dssp HHHHHHHHHHTCCEEEESCSGGGGTCCGGGGCSCGGGCCCCEETTTTSEECCCCSCHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 9999999974999797189874673603578698677847657887761368876799999999972997999998
No 148
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=31.41 E-value=11 Score=14.11 Aligned_cols=18 Identities=22% Similarity=0.058 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHCCCEE
Q ss_conf 999999999998189899
Q 537021.9.peg.7 195 YRESQVVQLAYTHELPLV 212 (1033)
Q Consensus 195 ~~~~~l~~lA~~~~iPlV 212 (1033)
.+++.+.+.+++.++.+.
T Consensus 30 ~i~~~l~~~a~~~~i~l~ 47 (154)
T 1uqr_A 30 DIEQHLQQSAQAQGYELD 47 (154)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEE
T ss_conf 999999999997398354
No 149
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Probab=31.35 E-value=15 Score=12.79 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 787899999862499999999999999975000133101478889999
Q 537021.9.peg.7 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 (1033)
Q Consensus 727 ~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y 774 (1033)
+.+..|-.=..+=|+++++.-.||.+=-.|+.|.=+-+---|.|.+||
T Consensus 97 ~~~~~l~~ie~~yGVp~~ii~AiwGvET~yG~~~G~~~v~~aLaTLA~ 144 (322)
T 1qus_A 97 QYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSF 144 (322)
T ss_dssp HTHHHHHHHHHHHCCCHHHHHHHHHHHHTTTTCCCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999999999795988875620355310124588618999999997
No 150
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1
Probab=31.28 E-value=15 Score=12.88 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=33.5
Q ss_pred CCCHHHHHH----CHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 881334331----44476443299899999999789988998116517
Q 537021.9.peg.7 9 PSFVHLQVH----SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52 (1033)
Q Consensus 9 ~~FvhLh~h----S~ySlldg~~~~e~LV~~A~~~G~~AiAITD~~nl 52 (1033)
|++.|||.- +.||--+=..+.+.+-+.-+++|..|+-|++-.|+
T Consensus 3 ~~~~~~~~~~~~~~~fs~~E~~~R~~rl~~~m~~~~lDalvi~~~~ni 50 (401)
T 1chm_A 3 PKTLRIRNGDKVRSTFSAQEYANRQARLRAHLAAENIDAAIFTSYHNI 50 (401)
T ss_dssp CSEECCCCSCCCCCSSCHHHHHHHHHHHHHHHHHTTCSEEEECSHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 865667887707899799999999999999999879989998998551
No 151
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=31.25 E-value=15 Score=12.77 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=9.5
Q ss_pred HHHHCCCCCHHHC
Q ss_conf 5544037563332
Q 537021.9.peg.7 388 YALTITDIDPLRF 400 (1033)
Q Consensus 388 Y~LgIT~VDPi~~ 400 (1033)
|-+||+.+|=++.
T Consensus 115 ~~~Gi~ti~dL~~ 127 (335)
T 2fmp_A 115 VDEGIKTLEDLRK 127 (335)
T ss_dssp HHTTCCSHHHHHT
T ss_pred HHCCCCCHHHHHH
T ss_conf 9818875999987
No 152
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=30.58 E-value=16 Score=12.69 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 8510476433444420466776554403756
Q 537021.9.peg.7 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 (1033)
Q Consensus 366 ~ak~~gI~vGpGRGSAagSLVaY~LgIT~VD 396 (1033)
|+...||.==|+=|||++.|.+|+..--..|
T Consensus 219 F~p~~Gi~EDpaTGSaa~aLa~yl~~~g~~~ 249 (298)
T 1xub_A 219 FSPAYGVVEDAATGSAAGPLAIHLARHGQIE 249 (298)
T ss_dssp EBGGGTBSSCSCCHHHHHHHHHHHHHTTSSC
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 2146688888764231699999999848988
No 153
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii OT3}
Probab=30.42 E-value=13 Score=13.28 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=9.0
Q ss_pred HHHHHHHHCCCEEEECCCCCC
Q ss_conf 999999818989980883007
Q 537021.9.peg.7 200 VVQLAYTHELPLVATNNSLFL 220 (1033)
Q Consensus 200 l~~lA~~~~iPlVaTndv~Y~ 220 (1033)
.++.|+++|+-+|+..+++..
T Consensus 108 ai~~A~~~Gi~~v~v~ns~H~ 128 (360)
T 1v9n_A 108 AIKKAKDTGIGIVIARNSNHY 128 (360)
T ss_dssp HHHHHHHHSEEEEEEEEECCC
T ss_pred HHHHHHHCCCEEEEECCCCCC
T ss_conf 999998639559973046877
No 154
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=30.40 E-value=15 Score=12.77 Aligned_cols=44 Identities=32% Similarity=0.461 Sum_probs=28.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCC
Q ss_conf 2135654178999999998874025434332344358899876201410122114
Q 537021.9.peg.7 570 KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 (1033)
Q Consensus 570 K~D~Lgl~~L~~i~~~~~~i~~~~~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~e 624 (1033)
.-|-|-+-.+++++..++. .| +|+.-. +|..+..|...|+-|+-
T Consensus 377 RqD~l~~q~~~~m~~i~~~---~~--~dl~l~------~Y~vi~~~~~~GlIE~V 420 (614)
T 3ls8_A 377 RQDQLILQIISLMDKLLRK---EN--LDLKLT------PYKVLATSTKHGFMQFI 420 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TT--CCCCCC------CCCEEESSSSEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHH---CC--CCCCCE------EEEEEECCCCCCEEEEE
T ss_conf 3889999999999999986---68--776330------14786058987648886
No 155
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer, electron transport, heme, iron, metal-binding, thylakoid, transport; HET: HEM; 1.23A {Synechococcus SP}
Probab=30.35 E-value=16 Score=12.66 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 762100145787533365687899999998303802
Q 537021.9.peg.7 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 (1033)
Q Consensus 406 RFLnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~ 441 (1033)
......+..||-.+--++++.+..|+.||.+....+
T Consensus 56 ~~~~~~~~~Mp~~~~~Lsd~ei~~l~aYi~~~a~~~ 91 (93)
T 3dr0_A 56 YQVTNGQGAMPAFGGRLSDADIANVAAYIADQAENN 91 (93)
T ss_dssp HHHHHCBTTBCCCBTTBCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 997258799987667899999999999999875079
No 156
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=30.12 E-value=16 Score=12.63 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=29.9
Q ss_pred HHHHHHHHCCCCEEEE-------ECCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999789988998-------116517749999999997699638999
Q 537021.9.peg.7 31 NILDKIAADQQPAIAI-------TDTNNLFSALEFSQKACAAGIQPIIGC 73 (1033)
Q Consensus 31 ~LV~~A~~~G~~AiAI-------TD~~nl~Gav~F~~ackk~gIKPIiG~ 73 (1033)
+-++..++.|+.+|=| -+.+.+.-+-++...|.++||+.|+..
T Consensus 36 ~~~~~~k~~G~N~vRl~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~Vildl 85 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999997699889970316555787709999999999998799899984
No 157
>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=30.01 E-value=13 Score=13.47 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899999851047643344442
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGPGRGS 380 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGpGRGS 380 (1033)
|.++|++|.+++|+|-| ||+
T Consensus 150 V~~iv~~A~~~~vpv~p-rGg 169 (584)
T 2uuu_A 150 VERLVQLAHKYNVVIIP-MGG 169 (584)
T ss_dssp HHHHHHHHHHHTCEEEE-ESS
T ss_pred HHHHHHHHHHCCCEEEE-ECC
T ss_conf 99999999987982999-889
No 158
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Probab=29.97 E-value=16 Score=12.61 Aligned_cols=21 Identities=33% Similarity=0.229 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHCCCEEEECC
Q ss_conf 999999999981898998088
Q 537021.9.peg.7 196 RESQVVQLAYTHELPLVATNN 216 (1033)
Q Consensus 196 ~~~~l~~lA~~~~iPlVaTnd 216 (1033)
....++..|++.++.++.+..
T Consensus 91 ~~d~~v~~a~~~gi~v~l~~~ 111 (344)
T 1qnr_A 91 TLDYVVQSAEQHNLKLIIPFV 111 (344)
T ss_dssp HHHHHHHHHHHHTCEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEECC
T ss_conf 889999999975997876014
No 159
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=29.93 E-value=10 Score=14.29 Aligned_cols=16 Identities=25% Similarity=0.088 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHCCCE
Q ss_conf 9999999999818989
Q 537021.9.peg.7 196 RESQVVQLAYTHELPL 211 (1033)
Q Consensus 196 ~~~~l~~lA~~~~iPl 211 (1033)
+++.+.+.|++.++.+
T Consensus 37 i~~~~~~~a~~~~i~~ 52 (153)
T 3lwz_A 37 IVSQLEIQAQGMDVAL 52 (153)
T ss_dssp HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHCCCCE
T ss_conf 9999999998759817
No 160
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=29.80 E-value=8.1 Score=15.13 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1789999999988740254343323443588998762
Q 537021.9.peg.7 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613 (1033)
Q Consensus 577 ~~L~~i~~~~~~i~~~~~~~d~~~ip~~D~~~~~l~~ 613 (1033)
.+|.+|+..+.-+++...++|+.-.| +||+.|.+=.
T Consensus 26 ~~l~ii~~v~~rLre~~P~~~ve~fp-~~p~~Y~l~h 61 (175)
T 2gjv_A 26 ETLSVIHTVANRLRELNPDMDIHISS-TDAKVYIPTG 61 (175)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEECCS-SCTTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECC-CCHHHCCCCC
T ss_conf 57789999999999769785169667-9887736578
No 161
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Probab=29.73 E-value=15 Score=12.75 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=10.9
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCH
Q ss_conf 9999999981898998088300787
Q 537021.9.peg.7 198 SQVVQLAYTHELPLVATNNSLFLSE 222 (1033)
Q Consensus 198 ~~l~~lA~~~~iPlVaTndv~Y~~~ 222 (1033)
+.+++.|+++|+-+|+..+++..-.
T Consensus 95 ~~ai~kA~~~Gi~~v~v~ns~H~G~ 119 (333)
T 1nxu_A 95 DRAIELAADHGIGLVALRNANHWMR 119 (333)
T ss_dssp HHHHHHHHHHSEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 9999999971947997267786520
No 162
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=29.71 E-value=5.6 Score=16.52 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCCCC
Q ss_conf 998788641110001332210-23455575
Q 537021.9.peg.7 270 ALENTVEIARRCSFILQVHAP-ILPRFIEK 298 (1033)
Q Consensus 270 Ai~NT~~IAe~c~~~l~~~~~-~lP~f~~p 298 (1033)
.++|+.+++.-|.|-..-..+ -+|-+...
T Consensus 35 lLKnSGel~at~~fL~tG~r~dgyPiW~R~ 64 (111)
T 3k6g_A 35 FLKNSGELEATSAFLASGQRADGYPIWSRQ 64 (111)
T ss_dssp HHHTTTCHHHHHHHHHHSSCTTSCCCCCHH
T ss_pred HHHCCCCHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 997253589999999808789998512326
No 163
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=29.48 E-value=16 Score=12.55 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCC-EEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 4898-899819767967888877997899999999987659868999943991158999999999998189899
Q 537021.9.peg.7 140 GTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLV 212 (1033)
Q Consensus 140 ~~eg-LIvlsg~~~g~i~~~l~~~~~~~a~~~l~~l~~~Fgd~~ylEl~~~~~~e~~~~~~l~~lA~~~~iPlV 212 (1033)
..++ ++.+|||.+|-+.-++. ++.+++|++--.+...............+|+.++++..
T Consensus 24 g~k~vvvglSGGVDSav~A~La--------------~~a~~~~v~~v~mp~~~~~~~~~~~A~~~a~~Lgi~~~ 83 (268)
T 1xng_A 24 GFKKVVYGLSGGLDSAVVGVLC--------------QKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYT 83 (268)
T ss_dssp TCCCEEEECCSSHHHHHHHHHH--------------HHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHH--------------HHHHHHCCEEEECCCHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9981999786889999999999--------------98503226787135010571557999999998330230
No 164
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=29.20 E-value=17 Score=12.52 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHCCC--CCC--CCCCCCHHHHHHHHHHHC
Q ss_conf 63055788899999851047--643--344442046677655440
Q 537021.9.peg.7 352 KFSGYFLIVADFIQWAKKNN--IPV--GPGRGSGAGSVTAYALTI 392 (1033)
Q Consensus 352 gf~~YFLiV~Div~~ak~~g--I~v--GpGRGSAagSLVaY~LgI 392 (1033)
....||--+.++|+-|.++| ++| ..|++=+|..++||++-=
T Consensus 89 ~i~~~~~~~~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~aYLm~~ 133 (176)
T 3cm3_A 89 DISKYFDDVTAFLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSK 133 (176)
T ss_dssp CCGGGHHHHHHHHHHHHHHTCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699999999999999985599899999987741499999999997
No 165
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Probab=29.17 E-value=17 Score=12.51 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCCEEEE--------------------ECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 899999999789988998--------------------11651774999999999769963899
Q 537021.9.peg.7 29 LNNILDKIAADQQPAIAI--------------------TDTNNLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 29 ~e~LV~~A~~~G~~AiAI--------------------TD~~nl~Gav~F~~ackk~gIKPIiG 72 (1033)
.++.++..+++|+.+|=+ -|...+.-+-+|+++|.++||+.|+-
T Consensus 47 ~~~~l~~l~~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gi~vil~ 110 (353)
T 2c0h_A 47 FESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFT 110 (353)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999998599199988461765575434566667678667787999999999789989998
No 166
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=29.15 E-value=17 Score=12.51 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=43.7
Q ss_pred CHHHHHHHHCCCCCCCCCCCCC-----HHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 1056762100145787533365-----68789999999830380215542207787788999999975279988988
Q 537021.9.peg.7 402 LLFERFLNPDRMSMPDFDIDFC-----QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 (1033)
Q Consensus 402 LlFERFLnp~R~~~PDIDiDf~-----~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~ 473 (1033)
-+.|||-+|+|+ +|..=+|.. .+-+.++-+.+.++|-...+-.|+|..+=+--.| .-+|+.||.|+..+.
T Consensus 86 ~l~~~l~~~~ri-lpG~~vy~s~ll~dP~~l~~lG~~lA~~~~~~~iD~Vvgv~~~GiplA-~~vA~~LgvP~v~~r 160 (291)
T 1o57_A 86 TLGQSLANPERI-LPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLA-YAAASYLNVPVVIVR 160 (291)
T ss_dssp HHHHHHTCGGGE-ETTTEECCTTTTTCHHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHH-HHHHHHHTCCEEEEB
T ss_pred HHHHHHCCCCCC-CCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH-HHHHHHHCCCEEEEE
T ss_conf 999996599952-588568756640699999999999999737789979993175669999-999999699979999
No 167
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=28.61 E-value=14 Score=13.16 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=7.4
Q ss_pred HHHHHHHHHHCCCCEEE
Q ss_conf 99999999976996389
Q 537021.9.peg.7 55 ALEFSQKACAAGIQPII 71 (1033)
Q Consensus 55 av~F~~ackk~gIKPIi 71 (1033)
.-++.++|.+.|||.|+
T Consensus 77 fk~LV~~aH~~GI~VIl 93 (471)
T 1jae_A 77 FTDMTRRCNDAGVRIYV 93 (471)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 99999999987998999
No 168
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Probab=28.61 E-value=17 Score=12.44 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=30.3
Q ss_pred HHHCCCHHHHHHHHHHCCCCEEEEE--------C--CCHHH-HHHHHH----HHHHHCCCCEEEE
Q ss_conf 4432998999999997899889981--------1--65177-499999----9999769963899
Q 537021.9.peg.7 23 LEGALSLNNILDKIAADQQPAIAIT--------D--TNNLF-SALEFS----QKACAAGIQPIIG 72 (1033)
Q Consensus 23 ldg~~~~e~LV~~A~~~G~~AiAIT--------D--~~nl~-Gav~F~----~ackk~gIKPIiG 72 (1033)
.|...+-++=++.++++|++|.=++ | .|... .+++|| .+|+++||+|++-
T Consensus 53 ~d~y~~y~eDi~l~~~lG~~~yRfSi~WsRI~P~g~~g~~n~~gl~~Y~~~id~l~~~GI~P~vT 117 (469)
T 2e9l_A 53 CGSYTLWEEDLKCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVTPIVT 117 (469)
T ss_dssp TCTTTCHHHHHHHHHHHTCSEEEEECCHHHHSTTSSTTSCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf 66456379999999982999897447699853278778647999999999999999829972103
No 169
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=28.26 E-value=17 Score=12.39 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=28.6
Q ss_pred CCEEEEEECCC-----HHHHH----HHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 86899994399-----11589----9999999999818989980883007
Q 537021.9.peg.7 180 DRLYVNLQRHR-----GYDRY----RESQVVQLAYTHELPLVATNNSLFL 220 (1033)
Q Consensus 180 d~~ylEl~~~~-----~~e~~----~~~~l~~lA~~~~iPlVaTndv~Y~ 220 (1033)
.+..+|+.... +..+. ....+++++++++.|+|.++|.|.+
T Consensus 123 ~gValEIn~s~ll~~~~~~R~~~l~n~~~ll~L~kky~~piVvsSdAhs~ 172 (212)
T 1v77_A 123 KNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEK 172 (212)
T ss_dssp HTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSG
T ss_pred CCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCH
T ss_conf 89189997627644798647899999999999999819988997699982
No 170
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, structural genomics, PSI-2, protein structure initiative; 2.55A {Bacillus halodurans}
Probab=28.19 E-value=17 Score=12.38 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=43.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 86249999999999999997500013310147888999999999973026667775100235420258999888863685
Q 537021.9.peg.7 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 (1033)
Q Consensus 736 ~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP~eF~aa~L~~~~~~~~~~~~~i~e~~~~gi~ 815 (1033)
-+...++-+.|..||+.+..--|-.|+....++ .--+.++ .. .|-...-..++.++.+.-.
T Consensus 59 Ii~QQiS~~aA~ti~~Rl~~~~G~~~p~p~~l~------------~~~~~~L-----r~-~Gls~~K~~~i~~la~~~~- 119 (233)
T 2h56_A 59 IVEQQLSIKAASAIYGRVEQLVGGALEKPEQLY------------RVSDEAL-----RQ-AGVSKRKIEYIRHVCEHVE- 119 (233)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHH------------TSCHHHH-----HH-TTCCHHHHHHHHHHHHHHH-
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH------------HCCHHHH-----HH-CCCCHHHHHHHHHHHHHHH-
T ss_conf 981831499999999999999489999968886------------2999999-----77-7997878999999999998-
Q ss_pred CCCCCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHH
Q ss_conf 0355233421003531986985026858969899999999
Q 537021.9.peg.7 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855 (1033)
Q Consensus 816 vl~PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive 855 (1033)
.=.++... -...+...++--|.+|||||.-+++-+.=
T Consensus 120 --~g~~~~~~-l~~~~~~e~~~~L~~ikGIGpWTA~~ill 156 (233)
T 2h56_A 120 --SGRLDFTE-LEGAEATTVIEKLTAIKGIGQWTAEMFMM 156 (233)
T ss_dssp --TTSSCHHH-HTTSCHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred --HCCCCCCC-CCCCCHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf --17752001-01268889999988068848789999999
No 171
>3mmw_A Endoglucanase; TIM barrel fold, hydrolase; 1.85A {Thermotoga maritima} PDB: 3mmu_A
Probab=28.09 E-value=17 Score=12.37 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHCCCCEEEEE----------CCC-----HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98999999997899889981----------165-----1774999999999769963899
Q 537021.9.peg.7 28 SLNNILDKIAADQQPAIAIT----------DTN-----NLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 28 ~~e~LV~~A~~~G~~AiAIT----------D~~-----nl~Gav~F~~ackk~gIKPIiG 72 (1033)
-.++.++..++.|+.+|=|- +.. .+...-++...|+++||++|+-
T Consensus 34 ~t~~~~~~i~~~G~N~VRipi~w~~~~~~~~~~~~~~~~l~~ld~~i~~a~~~gi~vild 93 (317)
T 3mmw_A 34 IKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLAVVIN 93 (317)
T ss_dssp CCTHHHHHHHHTTCCEEEECCCCGGGBCSSTTCCBCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 629999999983999899477789836888887408899999999999999779989997
No 172
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=28.04 E-value=15 Score=12.84 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=12.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 9999985104764334444204667
Q 537021.9.peg.7 361 ADFIQWAKKNNIPVGPGRGSGAGSV 385 (1033)
Q Consensus 361 ~Div~~ak~~gI~vGpGRGSAagSL 385 (1033)
.|+.+++++.|-. + .+=|++||-
T Consensus 214 ~~i~~~l~~~ga~-~-~~lSGSGst 236 (275)
T 1uek_A 214 KEVRGRMRALGLR-G-VLMSGSGSA 236 (275)
T ss_dssp HHHHHHHHHTTCE-E-EEECTTSSC
T ss_pred HHHHHHHHHCCCC-E-EEEECHHHC
T ss_conf 9999999967998-6-999884124
No 173
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Oryza sativa}
Probab=27.91 E-value=2.7 Score=19.15 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=30.4
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEECCCEEEEEHHHHCCCCHHHHHHHHH
Q ss_conf 888636850355233421003531986985026858969899999999
Q 537021.9.peg.7 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855 (1033)
Q Consensus 808 e~~~~gi~vl~PdIN~S~~~f~~~~~~Ir~Gl~~Ikgvg~~~~~~Ive 855 (1033)
....+.+.|...|| .+++.|.++|..|.|||...+..|++
T Consensus 41 ~~~~~~vRI~GvnI--------p~nK~V~~ALT~IyGIG~~~A~~Ic~ 80 (145)
T 3bbn_M 41 GLQIECIRIGGVEI--------PNHKRVEYSLQYIHGIGRSRSRQILL 80 (145)
T ss_dssp ------CCCSSSCC--------CCSSBTTTGGGGSTTCCSSTTTGGGT
T ss_pred CEEEEEEEEECCCC--------CCCCEEEEHHHHHHCCCHHHHHHHHH
T ss_conf 54789899848748--------99977212355674638899999999
No 174
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=27.90 E-value=17 Score=12.35 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHCCCEEE
Q ss_conf 99999999981898998
Q 537021.9.peg.7 197 ESQVVQLAYTHELPLVA 213 (1033)
Q Consensus 197 ~~~l~~lA~~~~iPlVa 213 (1033)
..+++++|+++|+-+|.
T Consensus 89 ld~~i~~a~~~Gi~VIl 105 (345)
T 3jug_A 89 VREVIELAEQNKMVAVV 105 (345)
T ss_dssp HHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 99999999988999999
No 175
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=27.73 E-value=17 Score=12.32 Aligned_cols=18 Identities=33% Similarity=0.296 Sum_probs=7.6
Q ss_pred HHHHHHHHCCCEEEECCC
Q ss_conf 999999818989980883
Q 537021.9.peg.7 200 VVQLAYTHELPLVATNNS 217 (1033)
Q Consensus 200 l~~lA~~~~iPlVaTndv 217 (1033)
+++.|+++|+-+|+..++
T Consensus 106 aie~Ak~~Gi~~v~v~ns 123 (358)
T 1z2i_A 106 AMALAEKFGIGAVAIRNS 123 (358)
T ss_dssp HHHHHHHHSEEEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECC
T ss_conf 999998548627997347
No 176
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*
Probab=27.60 E-value=17 Score=12.31 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q ss_conf 9999999999818989980
Q 537021.9.peg.7 196 RESQVVQLAYTHELPLVAT 214 (1033)
Q Consensus 196 ~~~~l~~lA~~~~iPlVaT 214 (1033)
+.+++++.+.+.|+.+|.+
T Consensus 111 ~~~~vv~~a~~~Gl~vild 129 (395)
T 2jep_A 111 RIQQVVDYAYNEGLYVIIN 129 (395)
T ss_dssp HHHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEE
T ss_conf 9999999998589979999
No 177
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=27.58 E-value=18 Score=12.30 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=7.7
Q ss_pred EEEEEECCHHHHHHHHHHHHH
Q ss_conf 399995696899999999989
Q 537021.9.peg.7 98 SIVLLVSTAEGYQRLIELVSR 118 (1033)
Q Consensus 98 ~lvlLAkN~~Gy~nL~kL~S~ 118 (1033)
|++=|-++-..++..++.++.
T Consensus 40 ~IIdL~kT~~~L~~A~~~i~~ 60 (256)
T 2vqe_B 40 HIIDLQKTMEELERTFRFIED 60 (256)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHH
T ss_conf 688699999999999999998
No 178
>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=27.54 E-value=18 Score=12.30 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCHH
Q ss_conf 98999999997899889981165177499999999976996389999998547664334456566667753999956968
Q 537021.9.peg.7 28 SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107 (1033)
Q Consensus 28 ~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG~E~~v~~~~~~~~~~~~~~~~~~~~~lvlLAkN~~ 107 (1033)
+=.+-.++|.+-..+.+-|.. +++.-..+..+.|+++|-+.++=+++ +-=|..++.
T Consensus 17 r~~~~le~al~s~~~~iflL~-g~I~~l~~iv~~~k~~gK~vfVHiDL-----------------------I~GL~~d~~ 72 (192)
T 3kts_A 17 HNQKDMEKILELDLTYMVMLE-THVAQLKALVKYAQAGGKKVLLHADL-----------------------VNGLKNDDY 72 (192)
T ss_dssp SSSHHHHHHTTSSCCEEEECS-EETTTHHHHHHHHHHTTCEEEEEGGG-----------------------EETCCCSHH
T ss_pred CCHHHHHHHHCCCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEEEEC-----------------------CCCCCCCHH
T ss_conf 788999999758998999953-71877999999999879989998531-----------------------677788889
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999989973248778740078999863489889981976796788887799789999999998765986899994
Q 537021.9.peg.7 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 (1033)
Q Consensus 108 Gy~nL~kL~S~a~~~~~~~~~p~i~~~~L~e~~~egLIvlsg~~~g~i~~~l~~~~~~~a~~~l~~l~~~Fgd~~ylEl~ 187 (1033)
|.+=|++.. +..+--..-...+..-...||..+- |.++- +....++.+......-+| ++|+.
T Consensus 73 av~fL~~~~-------~~dGIISTk~~~I~~Ak~~Gl~tIq--------R~Fli-DS~al~~~~~~i~~~~PD--~VEiL 134 (192)
T 3kts_A 73 AIDFLCTEI-------CPDGIISTRGNAIMKAKQHKMLAIQ--------RLFMI-DSSAYNKGVALIQKVQPD--CIELL 134 (192)
T ss_dssp HHHHHHHTT-------CCSEEEESCHHHHHHHHHTTCEEEE--------EEECC-SHHHHHHHHHHHHHHCCS--EEEEE
T ss_pred HHHHHHHHC-------CCCEEEECCHHHHHHHHHCCCEEEE--------EEEEE-EHHHHHHHHHHHHHCCCC--EEEEC
T ss_conf 999999842-------8998997889999999977990797--------66344-276899999998547989--99988
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 399115899999999999818989980883007878899998766884698
Q 537021.9.peg.7 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 (1033)
Q Consensus 188 ~~~~~e~~~~~~l~~lA~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI~~~~ 238 (1033)
..-.+ ..+.++.++.++|+||..=+ .+++| +..|++.|.
T Consensus 135 PG~~p-----~~I~~i~~~~~~PiIAGGLI--~~ked-----V~~aL~aGA 173 (192)
T 3kts_A 135 PGIIP-----EQVQKMTQKLHIPVIAGGLI--ETSEQ-----VNQVIASGA 173 (192)
T ss_dssp CTTCH-----HHHHHHHHHHCCCEEEESSC--CSHHH-----HHHHHTTTE
T ss_pred CHHHH-----HHHHHHHHHCCCCEEEECCC--CCHHH-----HHHHHHCCC
T ss_conf 66789-----99999997469999976672--88999-----999998599
No 179
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=27.19 E-value=18 Score=12.25 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=18.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHC
Q ss_conf 2685896989999999998379999978999734
Q 537021.9.peg.7 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 (1033)
Q Consensus 839 l~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~~rv 872 (1033)
|.+|+|||.+.|.+|++ .|.++.+++.-.
T Consensus 239 L~qIpGIs~~~A~~I~~-----~y~T~~~L~~a~ 267 (311)
T 2ziu_A 239 LMQISGVSGDKAAAVLE-----HYSTVSSLLQAY 267 (311)
T ss_dssp HTTBTTCCHHHHHHHHH-----HCSSHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHH-----HCCCHHHHHHHH
T ss_conf 98279999999999999-----769999999999
No 180
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=27.02 E-value=18 Score=12.23 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=32.7
Q ss_pred HHHHHCCCHHHHHHHHHHCCC-CEEEEECCCHHHHH--HHHHHHHHHCCCCE
Q ss_conf 764432998999999997899-88998116517749--99999999769963
Q 537021.9.peg.7 21 SLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSA--LEFSQKACAAGIQP 69 (1033)
Q Consensus 21 Slldg~~~~e~LV~~A~~~G~-~AiAITD~~nl~Ga--v~F~~ackk~gIKP 69 (1033)
.+.-|....+++-+.++++|. .++-+||.+. +-. -+..+..+++|+.-
T Consensus 14 ~i~~G~g~l~~l~~~l~~~g~~k~liVtd~~~-~~~~~~~v~~~L~~~~i~~ 64 (354)
T 3ce9_A 14 ILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGI-YELFGETIEKSIKSSNIEI 64 (354)
T ss_dssp EEEEESSCGGGHHHHHGGGTCSEEEEEEETTH-HHHHHHHHHHHHHTTTCEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCEE
T ss_conf 68989598999999999719895999989678-8999999999998779989
No 181
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=26.56 E-value=18 Score=12.17 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHCCCCEEEE-------ECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999789988998-------11651774999999999769963899
Q 537021.9.peg.7 27 LSLNNILDKIAADQQPAIAI-------TDTNNLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 27 ~~~e~LV~~A~~~G~~AiAI-------TD~~nl~Gav~F~~ackk~gIKPIiG 72 (1033)
...++-++..|++|+.+|=| .|...+.-+-+++.+|.++||..|+-
T Consensus 31 ~~~~~di~~~k~~G~N~VRl~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~Vi~d 83 (294)
T 2whl_A 31 DTASTAIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMVAVVE 83 (294)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 67999999999769987997466887558438999999999999789999971
No 182
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=26.45 E-value=18 Score=12.15 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=23.9
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHH-HHHHH
Q ss_conf 988886368503552334210035319-869850268589698999-99999
Q 537021.9.peg.7 806 CQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA-RHIME 855 (1033)
Q Consensus 806 i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~-~~Ive 855 (1033)
-..|++.||++.+++ .....+..+++ +.|---|..|||-|.... |.|+.
T Consensus 83 ~~~a~~~gi~l~~l~-~~~~iDi~iDGADEVd~~l~lIKGGGGAllrEKivA 133 (264)
T 1xtz_A 83 RNLILDNKLQLGSIE-QYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVS 133 (264)
T ss_dssp HHHHHHTTCEECCTT-TCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHH
T ss_pred HHHHHHCCCCEECHH-HCCCCCEEEECHHHHCCCCCEEEECCHHHHHHHHHH
T ss_conf 999998699560443-268520687061221557537876618877899999
No 183
>1e4i_A Beta-glucosidase; glycosyl hydrolase, family 1 glycosyl hydrolase, covalent enzyme-glycoside intermediate, alpha/beta barrel; HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A*
Probab=26.37 E-value=18 Score=12.14 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=8.2
Q ss_pred HHHHHHHHHHCCCEEEE
Q ss_conf 99999999818989980
Q 537021.9.peg.7 198 SQVVQLAYTHELPLVAT 214 (1033)
Q Consensus 198 ~~l~~lA~~~~iPlVaT 214 (1033)
.+++.-..+.||..++|
T Consensus 101 ~~~i~~l~~~GI~P~VT 117 (447)
T 1e4i_A 101 HRVVDLLNDNGIEPFCT 117 (447)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99999999749867886
No 184
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=26.34 E-value=13 Score=13.51 Aligned_cols=36 Identities=39% Similarity=0.640 Sum_probs=19.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHHCCCC
Q ss_conf 411411342003688850465785026966-733410335
Q 537021.9.peg.7 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPL-IDPMLKETQ 686 (1033)
Q Consensus 648 al~RPGp~~~~~~yi~rk~g~e~~~~~hp~-l~~iL~~T~ 686 (1033)
+-+|=|.+.-|..|.+.||-.- ..||. |++||.+|.
T Consensus 6 s~~kFgvLaKIV~~MK~RHq~g---~~hPLtLeEiLDEtn 42 (81)
T 1d8j_A 6 SGYKFGVLAKIVNYMKTRHQRG---DTHPLTLDEILDETQ 42 (81)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHT---CCSCBCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHH
T ss_conf 6630169999999999887158---988745999998886
No 185
>3ofp_M 30S ribosomal protein S13; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_M* 2wwl_M 2qal_M* 1p6g_M 1p87_M 2aw7_M 2avy_M 2i2u_M 2i2p_M* 2qan_M* 2qb9_M* 2qbb_M* 2qbd_M 2qbf_M 2qbh_M* 2qbj_M* 2qou_M* 2qow_M* 2qoy_M* 2qp0_M* ...
Probab=26.26 E-value=3.8 Score=17.96 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.2
Q ss_pred ECCCEEEEEHHHHCCCCHHHHHHHHH
Q ss_conf 31986985026858969899999999
Q 537021.9.peg.7 830 VGDNRIYYSLAAIKGVGTTTARHIME 855 (1033)
Q Consensus 830 ~~~~~Ir~Gl~~Ikgvg~~~~~~Ive 855 (1033)
+++..|.++|..|.|||...+..|.+
T Consensus 9 p~~K~v~~ALt~I~GIG~~~A~~Ic~ 34 (113)
T 3ofp_M 9 PDHKHAVIALTSIYGVGKTRSKAILA 34 (113)
T ss_dssp CCCCCHHHHHTSSSSCCSSHHHHGGG
T ss_pred CCCCEEEEEEECEECCCHHHHHHHHH
T ss_conf 99978665501434748999999999
No 186
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural genomics, PSI, protein structure initiative; 2.30A {Enterococcus faecalis V583} SCOP: d.21.1.2
Probab=26.11 E-value=17 Score=12.33 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=17.9
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 104764334444204667765544
Q 537021.9.peg.7 368 KKNNIPVGPGRGSGAGSVTAYALT 391 (1033)
Q Consensus 368 k~~gI~vGpGRGSAagSLVaY~Lg 391 (1033)
-..||.==|+=|||+|+|.+|+-.
T Consensus 193 P~~Gi~EDpaTGSa~~~La~yl~~ 216 (262)
T 1s7j_A 193 PKLRINEDPVCGSAHANLIPYWGK 216 (262)
T ss_dssp GGGTEEEESCCSTTHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 457998856523667879999986
No 187
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, hydrolase; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 1o7a_A* 2gk1_B*
Probab=26.07 E-value=18 Score=12.10 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=18.2
Q ss_pred HHHHHHHHHCCCCCC-----CCCCCCHHH
Q ss_conf 899999851047643-----344442046
Q 537021.9.peg.7 360 VADFIQWAKKNNIPV-----GPGRGSGAG 383 (1033)
Q Consensus 360 V~Div~~ak~~gI~v-----GpGRGSAag 383 (1033)
+.|||+||+++||.| .||--.|+.
T Consensus 222 i~eiv~yA~~rgI~vIPEiD~PGH~~a~~ 250 (507)
T 1now_A 222 VRMVIEYARLRGIRVLPEFDTPGHTLSWG 250 (507)
T ss_dssp HHHHHHHHHHTTCEEEEEEEESSSCTTHH
T ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHH
T ss_conf 99999999974967974465412899999
No 188
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=25.97 E-value=15 Score=12.89 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=21.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC--CCHHHCCCHHHHHHHHCC
Q ss_conf 64334444204667765544037--563332310567621001
Q 537021.9.peg.7 372 IPVGPGRGSGAGSVTAYALTITD--IDPLRFSLLFERFLNPDR 412 (1033)
Q Consensus 372 I~vGpGRGSAagSLVaY~LgIT~--VDPi~~~LlFERFLnp~R 412 (1033)
+-+|||.|+--..|...+-.+|. +||-=...|=+||.+.++
T Consensus 35 lEIGpG~G~LT~~L~~~~~~v~avEiD~~l~~~L~~~~~~~~n 77 (244)
T 1qam_A 35 FEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDN 77 (244)
T ss_dssp EEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCS
T ss_pred EEECCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCC
T ss_conf 9973887199999985558306998530177999974144776
No 189
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=25.88 E-value=19 Score=12.07 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHCCCCEEEEE-----CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 98999999997899889981-----165177499999999976996
Q 537021.9.peg.7 28 SLNNILDKIAADQQPAIAIT-----DTNNLFSALEFSQKACAAGIQ 68 (1033)
Q Consensus 28 ~~e~LV~~A~~~G~~AiAIT-----D~~nl~Gav~F~~ackk~gIK 68 (1033)
++++..+.+++.|-+|+ ++ |. +.-...++.++..+.|.-
T Consensus 4 ~i~~~f~~~k~~~~~al-i~yi~aG~P-~~~~~~~~l~~l~~~G~D 47 (262)
T 1rd5_A 4 PVSDTMAALMAKGKTAF-IPYITAGDP-DLATTAEALRLLDGCGAD 47 (262)
T ss_dssp CHHHHHHHHHHTTCCEE-EEEEETTSS-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCCEE-EEEEECCCC-CHHHHHHHHHHHHHCCCC
T ss_conf 89999999997599679-999727789-978999999999975999
No 190
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=25.83 E-value=19 Score=12.07 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.7
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 2100145787533365687899999998303802
Q 537021.9.peg.7 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 (1033)
Q Consensus 408 Lnp~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~ 441 (1033)
+...+..||-..--++++.+..|+.||.++++.+
T Consensus 56 ~~~g~~~Mp~f~~~Lsd~ei~~l~~Yi~~~~~~~ 89 (91)
T 1ls9_A 56 VNNGKGAMPAWADRLDEDDIEAVSNYVYDQAVNS 89 (91)
T ss_dssp HHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8068689965334799999999999999985699
No 191
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=25.78 E-value=19 Score=12.06 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHC
Q ss_conf 57875333656878999999983038021554220778778899999997527998898-8654310
Q 537021.9.peg.7 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV-DRLCKLI 479 (1033)
Q Consensus 414 ~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~-~~~~~~i 479 (1033)
-||.+.+|=-| .++++.|.+ -+|..++++|+.+|++...+ +++.++.
T Consensus 2 pm~~~~LD~~D---~~Il~~L~~----------------d~R~s~~eiA~~~gls~~tv~~Ri~rLe 49 (162)
T 2p5v_A 2 PMPQLTLDKTD---IKILQVLQE----------------NGRLTNVELSERVALSPSPCLRRLKQLE 49 (162)
T ss_dssp ---CCCCCHHH---HHHHHHHHH----------------CTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHH---HHHHHHHHH----------------CCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 68989808999---999999998----------------3799999999998929999999999998
No 192
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} SCOP: c.122.1.1
Probab=25.60 E-value=19 Score=12.04 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=8.8
Q ss_pred HHHHHHHHCCCEEEECCCCCC
Q ss_conf 999999818989980883007
Q 537021.9.peg.7 200 VVQLAYTHELPLVATNNSLFL 220 (1033)
Q Consensus 200 l~~lA~~~~iPlVaTndv~Y~ 220 (1033)
+++.|+++|+-+|+..+++..
T Consensus 97 aiekA~~~Gi~~v~v~ns~H~ 117 (344)
T 1rfm_A 97 AIKKAKNVGVGVVATRNANHF 117 (344)
T ss_dssp HHHHHHHHSEEEEEEEEECCC
T ss_pred HHHHHHHCCCEEEEECCCCCC
T ss_conf 999997447559985456777
No 193
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Thermoplasma acidophilum}
Probab=25.57 E-value=19 Score=12.03 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCHHH
Q ss_conf 999999998189899808830078788
Q 537021.9.peg.7 198 SQVVQLAYTHELPLVATNNSLFLSEED 224 (1033)
Q Consensus 198 ~~l~~lA~~~~iPlVaTndv~Y~~~~D 224 (1033)
+++++.+++.++|+|.|.+.|+.+..+
T Consensus 32 ~~li~~ar~~g~pVi~~~~~~~~~~~~ 58 (182)
T 3eef_A 32 RKVIETFRRSGLPVVYVNDSHYPDDPE 58 (182)
T ss_dssp HHHHHHHHHTTCCEEEEEECBCTTSTT
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 999999998299689982465677864
No 194
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=25.51 E-value=19 Score=12.02 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHCCC
Q ss_conf 998999999997899
Q 537021.9.peg.7 27 LSLNNILDKIAADQQ 41 (1033)
Q Consensus 27 ~~~e~LV~~A~~~G~ 41 (1033)
+++++|++..+..|.
T Consensus 11 v~~~~ll~agvH~G~ 25 (208)
T 1vi6_A 11 VPPDDYLAAGVHIGT 25 (208)
T ss_dssp SCHHHHHHHTTTBCC
T ss_pred CCHHHHHHHCEEECC
T ss_conf 249999973924787
No 195
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=25.51 E-value=15 Score=12.80 Aligned_cols=107 Identities=12% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHH-----HHHHHHHHCCCCCCCCCCCCHHHHHH-HHHHHCCCCCHHHCCCHHHHHHH
Q ss_conf 9999988778989860630557888-----99999851047643344442046677-65544037563332310567621
Q 537021.9.peg.7 336 DYRQRLDFELNVIARMKFSGYFLIV-----ADFIQWAKKNNIPVGPGRGSGAGSVT-AYALTITDIDPLRFSLLFERFLN 409 (1033)
Q Consensus 336 ~y~~RLe~EL~vI~~~gf~~YFLiV-----~Div~~ak~~gI~vGpGRGSAagSLV-aY~LgIT~VDPi~~~LlFERFLn 409 (1033)
+.+..|.-|++...+. .|.. ..+..-.+.-+++| --|+-.-||+ |-+-|.-.+=||++ -.+
T Consensus 144 ~~w~~L~~e~e~~Td~-----Wls~A~k~L~~i~~rs~~vNVLV--TstqLVpaLaK~LLygL~~~fpiEN------IYS 210 (274)
T 3geb_A 144 ETWLQLRAELEALTDL-----WLTHSLKALNLINSRPNCVNVLV--TTTQLIPALAKVLLYGLGSVFPIEN------IYS 210 (274)
T ss_dssp HHHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHSTTEEEEEE--ESSCHHHHHHHHHHTTCTTTSCGGG------EEE
T ss_pred HHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHCCCCEEEEEE--ECCCCHHHHHHHHHHCCCCCCCCCC------CCC
T ss_conf 9999999989865451-----79999999997743467579998--6784489999999862567565134------335
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 001457875333656878999999983038021554220778778899999997527998898
Q 537021.9.peg.7 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 (1033)
Q Consensus 410 p~R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~ 472 (1033)
.. .-+.+..++++.+|||+.....++.=+ .-=.++||.+++|+..+
T Consensus 211 a~------------kiGKesCFerI~~RFG~k~tyvvIGDG-----~dEe~AAk~l~~PFwrI 256 (274)
T 3geb_A 211 AT------------KTGKESCFERIMQRFGRKAVYVVIGDG-----VEEEQGAKKHNMPFWRI 256 (274)
T ss_dssp TT------------TTCHHHHHHHHHHHHCTTSEEEEEESS-----HHHHHHHHHTTCCEEEC
T ss_pred HH------------HCCHHHHHHHHHHHHCCCCEEEEECCC-----HHHHHHHHHCCCCEEEE
T ss_conf 31------------056899999999986898569997897-----67999999629985880
No 196
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=25.33 E-value=19 Score=12.00 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101677878999998624999999999999999750001331014788899999999997302
Q 537021.9.peg.7 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 (1033)
Q Consensus 722 ~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa~aya~~~y~~aylK~~yP 784 (1033)
++--+++-++..+-|.+.|++++.++.||..|-..+ ..+|..+++.|++
T Consensus 55 ~~RE~~vl~~~~~~a~~~~ld~~~i~~if~~Ii~~s--------------~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 55 PEREKYIYDRIRKLCKEHNVDENIGIKIFQRLIEHN--------------KALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--------------HHHHHHHHHCCCC
T ss_conf 899999999999986657969999999999999999--------------9999998857157
No 197
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase; HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1 c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A 1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A* 1pig_A* 1pif_A* 1bvn_P 3ij8_A* 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* ...
Probab=25.04 E-value=16 Score=12.68 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHCCCEEE
Q ss_conf 99999999981898998
Q 537021.9.peg.7 197 ESQVVQLAYTHELPLVA 213 (1033)
Q Consensus 197 ~~~l~~lA~~~~iPlVa 213 (1033)
.++|++-|.+.||.+|.
T Consensus 79 fk~LV~~aH~~GI~VIl 95 (496)
T 1hx0_A 79 FRDMVTRCNNVGVRIYV 95 (496)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 99999999987998998
No 198
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=24.84 E-value=19 Score=11.93 Aligned_cols=27 Identities=44% Similarity=0.715 Sum_probs=18.5
Q ss_pred EHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 02685896989999999998379999978999
Q 537021.9.peg.7 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 (1033)
Q Consensus 838 Gl~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~ 869 (1033)
=|.+|+|||...+..|++. |.|+.+++
T Consensus 163 ~L~~Ipgi~~~~A~~Ll~~-----f~Sl~~l~ 189 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILER-----FGSLERFF 189 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHH-----HSSHHHHT
T ss_pred HHHCCCCCCHHHHHHHHHH-----CCCHHHHH
T ss_conf 9840799899999999998-----69999998
No 199
>3idw_A Actin cytoskeleton-regulatory complex protein SLA1; clathrin adaptor, endocytosis, SAM domain, yeast, actin- binding, cell membrane; 1.85A {Saccharomyces cerevisiae}
Probab=24.68 E-value=19 Score=11.91 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=9.2
Q ss_pred HHHHHHHHHHCCCCCE
Q ss_conf 9999999830380215
Q 537021.9.peg.7 428 DEVIRYVQNKYGHERV 443 (1033)
Q Consensus 428 ~~vi~y~~~kyG~~~v 443 (1033)
-.|..|+.++||++.+
T Consensus 55 I~V~k~l~~k~~r~~~ 70 (72)
T 3idw_A 55 VRVMKHLDKKFGRENI 70 (72)
T ss_dssp HHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999998643203
No 200
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Probab=24.60 E-value=20 Score=11.90 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=26.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999862499999999999999975000133101
Q 537021.9.peg.7 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 (1033)
Q Consensus 731 ~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksH 765 (1033)
.-+.+|.++|.+++...++.-++..++| |+++-
T Consensus 75 ~H~~~al~~G~T~eEi~E~i~~~~~y~G--~p~~~ 107 (125)
T 2af7_A 75 SHVRGALNAGCSKDEIIEVMIQMAVYAG--FPAAI 107 (125)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTC--HHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCC--HHHHH
T ss_conf 9999998779999999999999999856--99999
No 201
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=24.53 E-value=20 Score=11.89 Aligned_cols=46 Identities=9% Similarity=0.137 Sum_probs=36.4
Q ss_pred CCCCCHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEE
Q ss_conf 489768898505589889999999611210158887699999984970499995
Q 537021.9.peg.7 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 (1033)
Q Consensus 978 ~~~~~~~~~~~~~~g~~v~iaG~V~~i~~~~TKkG~~mafltleD~~g~~e~~i 1031 (1033)
....+..+..+..+++.|.+-|.|++.- .++.| .|.|.||.+.+-|
T Consensus 23 ~~~~TV~~a~~~~Dd~~V~L~G~Iv~~l-----~~d~Y---~F~D~TG~I~VeI 68 (109)
T 1nnx_A 23 GSVTTVESAKSLRDDTWVTLRGNIVERI-----SDDLY---VFKDASGTINVDI 68 (109)
T ss_dssp CCCCCHHHHTTSCSSEEEEEEEEEEEEE-----ETTEE---EEEETTEEEEEEC
T ss_pred CCEEEHHHHHHCCCCCEEEEEEEEEEEE-----CCCEE---EEECCCCCEEEEE
T ss_conf 6579399775373898599988999784-----89438---9988997599997
No 202
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=24.52 E-value=20 Score=11.89 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=16.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 868999943991158999999999998189899808
Q 537021.9.peg.7 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATN 215 (1033)
Q Consensus 180 d~~ylEl~~~~~~e~~~~~~l~~lA~~~~iPlVaTn 215 (1033)
+++.+-+...+... ..-.+++.|++.|.|+|+..
T Consensus 83 ~Dv~i~iS~sG~t~--~~i~~~~~ak~~g~~vI~IT 116 (180)
T 1jeo_A 83 DDLLILISGSGRTE--SVLTVAKKAKNINNNIIAIV 116 (180)
T ss_dssp TCEEEEEESSSCCH--HHHHHHHHHHTTCSCEEEEE
T ss_pred CCEEEEECCCCCCH--HHHHHHHHHHHCCCCEEEEE
T ss_conf 99899975999808--99999999997599799996
No 203
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=24.32 E-value=20 Score=11.86 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=17.1
Q ss_pred CCCCCCCCCHHHHHHHCCCCEEEECCCCC-CHHHHHHHC
Q ss_conf 87787400789998634898899819767-967888877
Q 537021.9.peg.7 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSS-GPIDRAFFF 161 (1033)
Q Consensus 124 ~~~~~p~i~~~~L~e~~~egLIvlsg~~~-g~i~~~l~~ 161 (1033)
.|--.|..+.+.+..-+..|+.++.||.. +++.+++..
T Consensus 90 ~FivsP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~ 128 (214)
T 1wbh_A 90 QFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDY 128 (214)
T ss_dssp SCEEESSCCHHHHHHHHHSSSCEEEEESSHHHHHHHHHT
T ss_pred CEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf 899858999999999985499753784988999999985
No 204
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=24.21 E-value=20 Score=11.84 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 2685896989999999998379999978999
Q 537021.9.peg.7 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 (1033)
Q Consensus 839 l~~Ikgvg~~~~~~Ive~r~~g~f~sl~df~ 869 (1033)
|..|+|||.+.+..|+. .|.|+.++.
T Consensus 20 L~~iPGIg~k~~~~Ll~-----~f~sl~~i~ 45 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMH-----HVKNIAELA 45 (84)
T ss_dssp HHTCSSCCHHHHHHHHH-----HSSCHHHHH
T ss_pred HHCCCCCCHHHHHHHHH-----HCCCHHHHH
T ss_conf 98389999999999999-----966999998
No 205
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Probab=24.21 E-value=20 Score=11.84 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 55788899999851047643
Q 537021.9.peg.7 355 GYFLIVADFIQWAKKNNIPV 374 (1033)
Q Consensus 355 ~YFLiV~Div~~ak~~gI~v 374 (1033)
.|+=-+.++|++|+++||.|
T Consensus 102 ~~l~~l~~~v~~a~~~Gi~v 121 (481)
T 2osx_A 102 QYLDRVEDRVGWYAERGYKV 121 (481)
T ss_dssp HHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHCCCEE
T ss_conf 99999999999999779989
No 206
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=24.19 E-value=13 Score=13.30 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=10.9
Q ss_pred HHHCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 981898998088300787889999876688
Q 537021.9.peg.7 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 (1033)
Q Consensus 205 ~~~~iPlVaTndv~Y~~~~D~~~h~iL~aI 234 (1033)
......-|..|..-|.+-+ ..++|+|.++
T Consensus 80 ~~~~~~gIIiNpga~THtS-iai~DAL~~~ 108 (167)
T 3kip_A 80 KRQGVGFVVINAGAYTHTS-VGIRDALLGT 108 (167)
T ss_dssp HHTTCCEEEEECGGGGGTC-HHHHHHHHHT
T ss_pred HHCCCEEEEECCCHHEEEH-HHHHHHHHHC
T ss_conf 3458248983541011201-1169899854
No 207
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=24.04 E-value=20 Score=11.82 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 1677878999998624999999999999999750001331014
Q 537021.9.peg.7 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 (1033)
Q Consensus 724 ~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksHa 766 (1033)
..+.+-..|.+-..+.|++++.++++++.++..|...=|++-.
T Consensus 84 ~f~~~l~~~~~al~e~~~~~e~~~~~~~~~~~~A~~m~N~~d~ 126 (128)
T 2bkm_A 84 RAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVNTPDH 126 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999982999999999999999999986289888
No 208
>2qde_A Mandelate racemase/muconate lactonizing enzyme family protein; PSI-II, NYSGXRC, enolase, structural genomics, protein structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=23.93 E-value=20 Score=11.80 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 899999851047643344
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGPG 377 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGpG 377 (1033)
...++.+|++.|+.+-+|
T Consensus 280 ~~~i~~~A~~~gi~~~~~ 297 (397)
T 2qde_A 280 AQRWLTLARLANLPVICG 297 (397)
T ss_dssp HHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHCCCCEEEC
T ss_conf 999999999869988865
No 209
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=23.82 E-value=20 Score=11.79 Aligned_cols=28 Identities=7% Similarity=0.196 Sum_probs=15.4
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHC
Q ss_conf 85104764334444204667765544037563332
Q 537021.9.peg.7 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 (1033)
Q Consensus 366 ~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~ 400 (1033)
+++=.|| ||-+ |-.+ |-+||+.++=|+.
T Consensus 123 l~~I~Gi--Gpk~---a~~l--~~~Gi~tl~dL~~ 150 (381)
T 1jms_A 123 FTSVFGV--GLKT---AEKW--FRMGFRTLSKIQS 150 (381)
T ss_dssp HHTSTTC--CHHH---HHHH--HHTTCCSHHHHHH
T ss_pred HHHCCCC--CHHH---HHHH--HHCCCCCHHHHHH
T ss_conf 8737787--8999---9999--9869777999854
No 210
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=23.75 E-value=19 Score=12.09 Aligned_cols=46 Identities=11% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCEEEEEC---C---------------------CHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9999999978998899811---6---------------------51774999999999769963899999
Q 537021.9.peg.7 30 NNILDKIAADQQPAIAITD---T---------------------NNLFSALEFSQKACAAGIQPIIGCQL 75 (1033)
Q Consensus 30 e~LV~~A~~~G~~AiAITD---~---------------------~nl~Gav~F~~ackk~gIKPIiG~E~ 75 (1033)
++|++..+++|+.||=|+= | |+.-..-+|.++|.+.||+.|+=+-+
T Consensus 18 ~~~~~yl~~~G~t~I~l~Pv~e~~~~~~wy~gY~~~~Y~i~~r~Gt~~dlk~LV~~aH~~GI~VilD~V~ 87 (448)
T 1g94_A 18 QECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLI 87 (448)
T ss_dssp HHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999999970998899694836899998744688877436899999999999999999879999999857
No 211
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*
Probab=23.71 E-value=20 Score=11.77 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=8.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 56541789999999988740254
Q 537021.9.peg.7 573 FLGLKTLTLLQKSLDFLAQRGVK 595 (1033)
Q Consensus 573 ~Lgl~~L~~i~~~~~~i~~~~~~ 595 (1033)
+--+.+++-..++.++-++.|..
T Consensus 332 ~~~~GGitea~~~~~~a~~~Gi~ 354 (413)
T 1kko_A 332 TPDLGGIHNIVDAVLYCNKHGME 354 (413)
T ss_dssp GGGGSSTHHHHHHHHHHHHHTCE
T ss_pred HHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 03238999999999999986993
No 212
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789}
Probab=23.62 E-value=20 Score=11.76 Aligned_cols=65 Identities=8% Similarity=0.206 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHCHHHHHHH--------CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHC-CCCE
Q ss_conf 5668988133433144476443--------2998999999997899889981165177499999999976-9963
Q 537021.9.peg.7 4 YLEKSPSFVHLQVHSSYSLLEG--------ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQP 69 (1033)
Q Consensus 4 ~~~~~~~FvhLh~hS~ySlldg--------~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~-gIKP 69 (1033)
-+.+...|+--|||=..+.-+| -...++++++|++.|...+-++-. ++...-+..+.|+++ ++.|
T Consensus 7 ~~~~~~~~iD~~~~L~d~~F~~~y~~~~~hd~Dl~~Vl~rA~~~GV~~ii~~g~-~~~~~~~a~~La~~~~~~~p 80 (401)
T 3e2v_A 7 ATDSPLKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGS-SIAESQSAIELVSSVKDLSP 80 (401)
T ss_dssp ----CCCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCC-SHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHHHHHHCCCCCC
T ss_conf 888986138973478995766844676677137999999999879998999159-99999999999996623577
No 213
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=23.53 E-value=13 Score=13.51 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=8.1
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 4444204667765
Q 537021.9.peg.7 376 PGRGSGAGSVTAY 388 (1033)
Q Consensus 376 pGRGSAagSLVaY 388 (1033)
.|.||.||||-|-
T Consensus 105 EG~gS~agSLSsL 117 (151)
T 1i7w_B 105 EGSGSEAASLSSL 117 (151)
T ss_dssp CCCCCCCTTCCCC
T ss_pred CCCCCCCCCCCCC
T ss_conf 7888746771001
No 214
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.50 E-value=20 Score=11.74 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 9999887789898606305578
Q 537021.9.peg.7 337 YRQRLDFELNVIARMKFSGYFL 358 (1033)
Q Consensus 337 y~~RLe~EL~vI~~~gf~~YFL 358 (1033)
-.+|.+.+|....+|||.+.=.
T Consensus 13 pee~y~~qL~~L~~MGF~d~~~ 34 (58)
T 1wr1_B 13 PEERYEHQLRQLNDMGFFDFDR 34 (58)
T ss_dssp HHHHTHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHH
T ss_conf 8999999999999959996899
No 215
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1
Probab=23.28 E-value=21 Score=11.71 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 89889981976796788887799789999999998765986--8999943991158999999999998189899808830
Q 537021.9.peg.7 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218 (1033)
Q Consensus 141 ~egLIvlsg~~~g~i~~~l~~~~~~~a~~~l~~l~~~Fgd~--~ylEl~~~~~~e~~~~~~l~~lA~~~~iPlVaTndv~ 218 (1033)
-+|+++ +|..|+...+ ..+|-++.++...+.-+++ ++.++......+ .-.+.+.|++.|.--|.....+
T Consensus 47 v~gi~~--~G~tGE~~~L----s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~---ai~~a~~a~~~Gad~v~v~pP~ 117 (306)
T 1o5k_A 47 VNALIV--LGTTGESPTV----NEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEK---TLKLVKQAEKLGANGVLVVTPY 117 (306)
T ss_dssp CCEEEE--SSGGGTGGGC----CHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHH---HHHHHHHHHHHTCSEEEEECCC
T ss_pred CCEEEE--CEEHHHHHHC----CHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH---HHHHHHHHHHCCCCEEEECCCC
T ss_conf 998996--8213425558----999999999999985488888898468654999---9999999995699999985999
Q ss_pred CCCHHHHHHHHHHHHHHCC
Q ss_conf 0787889999876688469
Q 537021.9.peg.7 219 FLSEEDYEAHDVLMAVAHS 237 (1033)
Q Consensus 219 Y~~~~D~~~h~iL~aI~~~ 237 (1033)
|..+.+..+.+-...|...
T Consensus 118 ~~~~~~~~i~~~~~~ia~a 136 (306)
T 1o5k_A 118 YNKPTQEGLYQHYKYISER 136 (306)
T ss_dssp SSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 9997999999999999982
No 216
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors, cancer; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=23.15 E-value=20 Score=11.89 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=24.7
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCC
Q ss_conf 2135654178999999998874025434332344358899876201410122114
Q 537021.9.peg.7 570 KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 (1033)
Q Consensus 570 K~D~Lgl~~L~~i~~~~~~i~~~~~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~e 624 (1033)
.-|.|-+-.+.+++...+ +.| +|+.-. +|..+..|...|+-++=
T Consensus 681 RqD~l~lQ~i~~m~~i~~---~~~--ldl~l~------~Y~vl~t~~~~G~IE~V 724 (940)
T 2wxf_A 681 RQDMLTLQMIQLMDVLWK---QEG--LDLRMT------PYGCLPTGDRTGLIEVV 724 (940)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTT--CCCCCC------CCCEEEEETTEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHH---HCC--CCCCCC------CEEEEECCCCCEEEEEE
T ss_conf 099999999999999998---669--885330------11899737996457884
No 217
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic enzyme, degenerate DNA recognition, hydrolase/DNA complex; HET: DNA; 1.70A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=23.11 E-value=21 Score=11.68 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=25.1
Q ss_pred CCCHHHHHH-HHHCCCCCHHHHCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 443588998-762014101221145347888877174048888
Q 537021.9.peg.7 602 PFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 (1033)
Q Consensus 602 p~~D~~~~~-l~~~g~t~GvFQ~es~~~~~~l~~~~p~~~~dl 643 (1033)
.+=|+-||+ ||.+|||.| ..||.+-.-+.-+.|.-.
T Consensus 109 ~fieElv~RfLLtrGD~LG------G~MRNigG~LAqrK~TR~ 145 (323)
T 1dc1_A 109 EFIDELIFRYLLFQGDSLG------GTMRNIAGALAQQKLTRA 145 (323)
T ss_dssp GHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHHHHHH
T ss_conf 7899999999996354235------035533678889999999
No 218
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp}
Probab=23.07 E-value=21 Score=11.68 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8998899811651774999999999769963899
Q 537021.9.peg.7 39 DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 39 ~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG 72 (1033)
+.++-|-|.+.|-+ +++..++|++.|++.|.=
T Consensus 4 ~~~kkiLianrGei--A~riiraarelG~~tV~V 35 (446)
T 3ouz_A 4 MEIKSILIANRGEI--ALRALRTIKEMGKKAICV 35 (446)
T ss_dssp TCCCEEEECCCHHH--HHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEECCCHH--HHHHHHHHHHCCCCEEEE
T ss_conf 54538999898699--999999999869919999
No 219
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3dbs_A* 3l13_A* 3l08_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* 3ene_A* 1e8y_A 1e8z_A* 2a4z_A* 2a5u_A* 2chw_A* 2chx_A* 2chz_A* ...
Probab=23.02 E-value=21 Score=11.67 Aligned_cols=45 Identities=22% Similarity=0.455 Sum_probs=25.3
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCC
Q ss_conf 32135654178999999998874025434332344358899876201410122114
Q 537021.9.peg.7 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 (1033)
Q Consensus 569 ~K~D~Lgl~~L~~i~~~~~~i~~~~~~~d~~~ip~~D~~~~~l~~~g~t~GvFQ~e 624 (1033)
+.-|.|-+-++.+++... ++.|. |+.- .+|..+..|...|+-++=
T Consensus 697 LRqD~l~lQ~i~~m~~i~---~~~~l--dl~l------~~Y~vi~t~~~~GlIE~V 741 (961)
T 1e7u_A 697 LRQDMLILQILRIMESIW---ETESL--DLCL------LPYGCISTGDKIGMIEIV 741 (961)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHTTC--CCCC------CCCCEEEEETTEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHH---HHCCC--CCCC------EEEEEEEECCCCEEEEEC
T ss_conf 128879999999999999---87688--7301------025899705883479988
No 220
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.92 E-value=19 Score=12.10 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=8.5
Q ss_pred HHHHHHHHHCCCEEEECC
Q ss_conf 999999981898998088
Q 537021.9.peg.7 199 QVVQLAYTHELPLVATNN 216 (1033)
Q Consensus 199 ~l~~lA~~~~iPlVaTnd 216 (1033)
.+++.|++.|+|+|+..+
T Consensus 107 ~~~~~ak~~g~~vI~IT~ 124 (200)
T 1vim_A 107 NISKKAKDIGSKLVAVTG 124 (200)
T ss_dssp HHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHCCCEEEEEEC
T ss_conf 999999987996999979
No 221
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=22.92 E-value=21 Score=11.66 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=30.7
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECC-CEEEEEHHHHCCCCHHHH-HHHHHHH
Q ss_conf 9988886368503552334210035319-869850268589698999-9999998
Q 537021.9.peg.7 805 FCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA-RHIMEAS 857 (1033)
Q Consensus 805 ~i~e~~~~gi~vl~PdIN~S~~~f~~~~-~~Ir~Gl~~Ikgvg~~~~-~~Ive~r 857 (1033)
-...|++.||++..++ .....++.+++ +.|--.|..|||=|.... |.|+...
T Consensus 56 t~~~~~~~Gi~~~~l~-~~~~iDiaiDGaDevd~~l~lIKGgGgallrEKiva~~ 109 (219)
T 1m0s_A 56 SEELLRKQGIEVFNAN-DVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAAL 109 (219)
T ss_dssp HHHHHHHTTCCBCCGG-GCSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCC-CCCCCCEECCCHHHCCCCCCCHHCCCHHHHHHHHHHHH
T ss_conf 9999998799733444-35654532364553084758621583888898999985
No 222
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.86 E-value=19 Score=12.00 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=15.9
Q ss_pred HHHHHHHHHCCCCCCCC-CCCC
Q ss_conf 89999985104764334-4442
Q 537021.9.peg.7 360 VADFIQWAKKNNIPVGP-GRGS 380 (1033)
Q Consensus 360 V~Div~~ak~~gI~vGp-GRGS 380 (1033)
|..+|++|+++++++-| |.|+
T Consensus 69 V~~~v~~a~~~~i~v~~rggG~ 90 (520)
T 1wvf_A 69 VQGVVKICNEHKIPIWTISTGR 90 (520)
T ss_dssp HHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999998798099989998
No 223
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
Probab=22.85 E-value=21 Score=11.65 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 299899999999789988998116517749
Q 537021.9.peg.7 26 ALSLNNILDKIAADQQPAIAITDTNNLFSA 55 (1033)
Q Consensus 26 ~~~~e~LV~~A~~~G~~AiAITD~~nl~Ga 55 (1033)
+.+++.+-+..++.|..++-||+..|++=.
T Consensus 2 m~Rl~klr~~m~~~~ld~~lit~~~ni~Yl 31 (132)
T 3ooo_A 2 MSKLNRIRHHLHSVQAELAVFSDPVTVNYL 31 (132)
T ss_dssp CHHHHHHHHHHHHTTCSEEEECCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 739999999999869999999253132474
No 224
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=22.70 E-value=21 Score=11.62 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=11.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 778989860630557888999998510476
Q 537021.9.peg.7 343 FELNVIARMKFSGYFLIVADFIQWAKKNNI 372 (1033)
Q Consensus 343 ~EL~vI~~~gf~~YFLiV~Div~~ak~~gI 372 (1033)
.|++.|.++-..-|= -+..++.+.|+
T Consensus 160 ~e~e~i~~~a~~v~~----~l~~~~~~~Gl 185 (425)
T 2h31_A 160 TEVDIMSHATQAIFE----ILEKSWLPQNC 185 (425)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHCCC
T ss_conf 899999999999999----99999997898
No 225
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A
Probab=22.60 E-value=21 Score=11.61 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCEEEE-----EC-------------------------CCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999789988998-----11-------------------------65177499999999976996389999
Q 537021.9.peg.7 30 NNILDKIAADQQPAIAI-----TD-------------------------TNNLFSALEFSQKACAAGIQPIIGCQ 74 (1033)
Q Consensus 30 e~LV~~A~~~G~~AiAI-----TD-------------------------~~nl~Gav~F~~ackk~gIKPIiG~E 74 (1033)
.++++..+++|.+.|=. +| .-|-+|.-+|..-|++.|..|++.+-
T Consensus 62 ~dv~~~l~~l~~~~lR~PGG~~~~~Y~W~~~iGp~~~R~~~~~~~w~~~~~n~~g~~ef~~~~~~~gaep~i~vn 136 (513)
T 2c7f_A 62 KDVIELVKELNVPIIRYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIEPNQVGINEFAKWCKKVNAEIMMAVN 136 (513)
T ss_dssp HHHHHHHHHHCCSEEEESCSTTGGGCCGGGGSSCGGGCCCEEETTTTEEECCSSCTHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 999999996299979839975157442058869968887655787674046864789999999980997999997
No 226
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=22.41 E-value=21 Score=11.58 Aligned_cols=73 Identities=21% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHCCCHHHHH----HHHHHHCC-C-CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 5689887886326841307----88976201-2-110167787899999862499999999999999975000133101
Q 537021.9.peg.7 693 EQVMQIAQLLSGYSLSEAD----VLRRAMGK-K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 (1033)
Q Consensus 693 EQvm~ia~~~ag~~~~ead----~lRra~~k-k-~~~~~~~~~~~f~~g~~~~g~~~~~a~~i~~~i~~f~~Y~FnksH 765 (1033)
.|...++..++|-..+... .+|.+-.. . ..+..+.+-..|.+-..+.|++++.++++|..++..|...=|++-
T Consensus 48 ~~~~fl~~~~GGp~~~~~~y~g~~~~~~H~~~~It~~~fd~wl~~~~~al~~~~~~~~~~~~~~~~~~~~a~~m~N~~~ 126 (132)
T 1ux8_A 48 KQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMKDAMDHVGLEGEIREFLFGRLELTARHMVNQTE 126 (132)
T ss_dssp HHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999980697656533477789988627999999999999999999998299999999999999999999608998
No 227
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=22.33 E-value=21 Score=11.57 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=6.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHH
Q ss_conf 899999997527998898865
Q 537021.9.peg.7 455 KAALRDVGRALQMPYSQVDRL 475 (1033)
Q Consensus 455 k~aird~~r~~g~~~~~~~~~ 475 (1033)
|+-+..+...+|+|.+.++++
T Consensus 138 r~ml~~vm~~mg~~~~~ie~v 158 (162)
T 3fmt_A 138 CSMIEHIMQSMQFPAELIEKV 158 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999999909999999998
No 228
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=22.16 E-value=22 Score=11.54 Aligned_cols=17 Identities=29% Similarity=0.351 Sum_probs=8.2
Q ss_pred CCCCCCHHHHHHHHHHHC
Q ss_conf 344442046677655440
Q 537021.9.peg.7 375 GPGRGSGAGSVTAYALTI 392 (1033)
Q Consensus 375 GpGRGSAagSLVaY~LgI 392 (1033)
|-||=.| +++.+|+.+.
T Consensus 116 GVG~kTA-~~il~~a~~~ 132 (211)
T 2abk_A 116 GVGRKTA-NVVLNTAFGW 132 (211)
T ss_dssp TCCHHHH-HHHHHHHHCC
T ss_pred CCCHHHH-HHHHHHHHCC
T ss_conf 8736999-9999987358
No 229
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A
Probab=22.09 E-value=22 Score=11.53 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=7.5
Q ss_pred HHHHHHHHHHCCCEEEE
Q ss_conf 99999999818989980
Q 537021.9.peg.7 198 SQVVQLAYTHELPLVAT 214 (1033)
Q Consensus 198 ~~l~~lA~~~~iPlVaT 214 (1033)
+.+++-..+.||..++|
T Consensus 100 ~~~i~~l~~~gI~P~VT 116 (431)
T 1ug6_A 100 DRLVDRLLASGITPFLT 116 (431)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99999999749978651
No 230
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 1vsm_A 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=21.91 E-value=22 Score=11.51 Aligned_cols=19 Identities=0% Similarity=-0.134 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHCCCEEEEC
Q ss_conf 9999999998189899808
Q 537021.9.peg.7 197 ESQVVQLAYTHELPLVATN 215 (1033)
Q Consensus 197 ~~~l~~lA~~~~iPlVaTn 215 (1033)
...+.++..++||....+.
T Consensus 81 s~~~~~~l~~~gI~~~~~~ 99 (162)
T 1cxq_A 81 SKSTREWLARWGIAHTTGI 99 (162)
T ss_dssp SHHHHHHHHHHTCEEECCC
T ss_pred CHHHHHHHHHCCEEEEECC
T ss_conf 6789998871690870078
No 231
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant defense, biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=21.77 E-value=22 Score=11.48 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCHHHHC
Q ss_conf 7899999999887402543433234435-889987620141012211
Q 537021.9.peg.7 578 TLTLLQKSLDFLAQRGVKVDLSLIPFDD-HETYHLLTTKGTLGIFQL 623 (1033)
Q Consensus 578 ~L~~i~~~~~~i~~~~~~~d~~~ip~~D-~~~~~l~~~g~t~GvFQ~ 623 (1033)
+..-++++++++.+...+.+++.+|++| ++.|+.+.+|+..|=.=+
T Consensus 309 ~~~d~~~~~~li~~g~i~~~i~~~~l~~i~eA~~~l~~g~~~GKiVl 355 (366)
T 1yqd_A 309 GMKETQEMIDFAAKHNITADIEVISTDYLNTAMERLAKNDVRYRFVI 355 (366)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECGGGHHHHHHHHHTTCCSSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999999985999555799859999999999976998408999
No 232
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=21.65 E-value=22 Score=11.47 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHCCCCCH
Q ss_conf 99999999887402543433234435-88998762014101
Q 537021.9.peg.7 580 TLLQKSLDFLAQRGVKVDLSLIPFDD-HETYHLLTTKGTLG 619 (1033)
Q Consensus 580 ~~i~~~~~~i~~~~~~~d~~~ip~~D-~~~~~l~~~g~t~G 619 (1033)
.-++++++++.+...+.+.+.+|++| ++.|+.+.+|++.|
T Consensus 318 ~~~~~~~~li~~g~i~~~~~~~~le~i~~A~~~l~~g~~~G 358 (369)
T 1uuf_A 318 PETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKY 358 (369)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEECGGGHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCE
T ss_conf 99999999998298988769983999999999997699816
No 233
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*
Probab=21.64 E-value=22 Score=11.47 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=4.7
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 4444204667765
Q 537021.9.peg.7 376 PGRGSGAGSVTAY 388 (1033)
Q Consensus 376 pGRGSAagSLVaY 388 (1033)
+..|...++...+
T Consensus 173 ~~~~~~~~~~~~~ 185 (669)
T 3k8k_A 173 TQEGAAGYNAAEW 185 (669)
T ss_dssp CSSGGGGCCGGGE
T ss_pred CCCCCCCCCCCCC
T ss_conf 6667788997644
No 234
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese enhancement, hydro; 1.63A {Trichoderma reesei}
Probab=21.64 E-value=22 Score=11.46 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=25.8
Q ss_pred HHCCCHHHHHHHHHHCCCCEEEEE--------C--C---CHHHHHHHH----HHHHHHCCCCEEEE
Q ss_conf 432998999999997899889981--------1--6---517749999----99999769963899
Q 537021.9.peg.7 24 EGALSLNNILDKIAADQQPAIAIT--------D--T---NNLFSALEF----SQKACAAGIQPIIG 72 (1033)
Q Consensus 24 dg~~~~e~LV~~A~~~G~~AiAIT--------D--~---~nl~Gav~F----~~ackk~gIKPIiG 72 (1033)
|..-+-++=++.++++|++|.=.. + . =|-. .++| ..+|+++||+||+-
T Consensus 59 d~y~ry~eDi~l~~~lG~~~yRfSI~WsRI~P~g~~~~~~n~~-gl~~Y~~~id~l~~~GI~P~vT 123 (473)
T 3ahy_A 59 DSYNRTAEDIALLKSLGAKSYRFSISWSRIIPEGGRGDAVNQA-GIDHYVKFVDDLLDAGITPFIT 123 (473)
T ss_dssp CGGGCHHHHHHHHHHHTCSEEEEECCHHHHSSSCSTTSCCCHH-HHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEECCCCHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6255219999999985989898336498705579878877989-9999999999998579767888
No 235
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=21.63 E-value=22 Score=11.46 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=34.2
Q ss_pred HHHHHHHHHC----CCCCCCCCCCCHHHHHHHHHHHCC--CCCHHHCCCHHHHHHHHCCC
Q ss_conf 8999998510----476433444420466776554403--75633323105676210014
Q 537021.9.peg.7 360 VADFIQWAKK----NNIPVGPGRGSGAGSVTAYALTIT--DIDPLRFSLLFERFLNPDRM 413 (1033)
Q Consensus 360 V~Div~~ak~----~gI~vGpGRGSAagSLVaY~LgIT--~VDPi~~~LlFERFLnp~R~ 413 (1033)
+..||+++.- .=+-+|||.|.--..|...+-.+| ++||--+..+=+||-+..+.
T Consensus 18 ~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~~~~v~aiE~D~~l~~~l~~~~~~~~n~ 77 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRV 77 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEE
T ss_pred HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 999999458999996899799735999999961650040340446689887554113400
No 236
>3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=21.62 E-value=22 Score=11.46 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0466776554403756333231056762100145787533365687899999998
Q 537021.9.peg.7 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 (1033)
Q Consensus 381 AagSLVaY~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDiDf~~~~R~~vi~y~~ 435 (1033)
++-++.|+.+|.+ .+||-.-.+|...+| | +++. --++..+++.
T Consensus 208 ~~~~~~Av~~GA~---------iIEKHfTldk~~~g~-d-~~S~-~~~e~~~~v~ 250 (350)
T 3g8r_A 208 MEPIMLAVAQGAT---------VFEKHVGLPTDQYGI-N-NYSA-NPEQVRRWLA 250 (350)
T ss_dssp CHHHHHHHHTTCC---------EEEEEBCCCBTTBCC-C-TTCB-CHHHHHHHHH
T ss_pred CCCHHHHHHCCCC---------CEEEEEECCCCCCCC-C-HHHC-CCHHHHHHHH
T ss_conf 2126878858974---------120678447667897-2-3202-7278999999
No 237
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=21.48 E-value=16 Score=12.63 Aligned_cols=11 Identities=18% Similarity=0.078 Sum_probs=5.2
Q ss_pred HHHCCCCCHHH
Q ss_conf 76201410122
Q 537021.9.peg.7 611 LLTTKGTLGIF 621 (1033)
Q Consensus 611 l~~~g~t~GvF 621 (1033)
+|-.|.-.|+-
T Consensus 387 Lf~AGQI~Gte 397 (651)
T 3ces_A 387 LFFAGQINGTT 397 (651)
T ss_dssp EEECSGGGTCC
T ss_pred EEEECCCCCCH
T ss_conf 78731203754
No 238
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, open form, form J, domain movement, cyclase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=21.37 E-value=22 Score=11.42 Aligned_cols=19 Identities=0% Similarity=0.071 Sum_probs=7.5
Q ss_pred HHHHHHHHHCCCCCCCCCC
Q ss_conf 8999888863685035523
Q 537021.9.peg.7 803 KKFCQDARQFNIQIMPPSV 821 (1033)
Q Consensus 803 ~~~i~e~~~~gi~vl~PdI 821 (1033)
..+.+=+++.|.++..||+
T Consensus 314 ~~i~~ll~~lgLPt~l~~~ 332 (393)
T 1sg6_A 314 SRIVKCLAAYGLPTSLKDA 332 (393)
T ss_dssp HHHHHHHHHTTCCCSTTCH
T ss_pred HHHHHHHHHCCCCCCCHHH
T ss_conf 9999999986999644243
No 239
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=21.36 E-value=22 Score=11.42 Aligned_cols=24 Identities=46% Similarity=0.637 Sum_probs=13.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 268589698999999999837999
Q 537021.9.peg.7 839 LAAIKGVGTTTARHIMEASADKPF 862 (1033)
Q Consensus 839 l~~Ikgvg~~~~~~Ive~r~~g~f 862 (1033)
|.+++|||.+++..|+..--+.|.
T Consensus 111 L~~LpGVG~kTA~~il~~a~~~p~ 134 (225)
T 1kg2_A 111 VAALPGVGRSTAGAILSLSLGKHF 134 (225)
T ss_dssp HHTSTTCCHHHHHHHHHHHHCCSC
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf 975898747899999998529861
No 240
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.20 E-value=22 Score=11.40 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=6.3
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999818989980
Q 537021.9.peg.7 200 VVQLAYTHELPLVAT 214 (1033)
Q Consensus 200 l~~lA~~~~iPlVaT 214 (1033)
+++.+++.+.-+|+.
T Consensus 46 iv~~~~~~~~d~V~i 60 (137)
T 1ccw_A 46 FIKAAIETKADAILV 60 (137)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999839987887
No 241
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=21.16 E-value=22 Score=11.39 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=36.7
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7644329989999999978998899811651774999999999769963899
Q 537021.9.peg.7 21 SLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 21 Slldg~~~~e~LV~~A~~~G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG 72 (1033)
|++..=.++++.++.|++.|+.+|-|-.... ..+-+.-+.+++.|++...-
T Consensus 9 ~~~~~~~pl~e~i~~a~~~GfdgIEl~~~~~-~~~~~~~~~l~~~gl~~~~~ 59 (260)
T 1k77_A 9 SMMFTEVPFIERFAAARKAGFDAVEFLFPYN-YSTLQIQKQLEQNHLTLALF 59 (260)
T ss_dssp TTSSTTSCGGGHHHHHHHHTCSEEECSCCTT-SCHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEECCCCC-CCHHHHHHHHHHCCCCEEEE
T ss_conf 1027899999999999994999899788788-99999999999869918996
No 242
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.13 E-value=22 Score=11.39 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 78999999983038021554220778778899999997527998898865431
Q 537021.9.peg.7 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 (1033)
Q Consensus 426 ~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~ 478 (1033)
..+.++++|.++-|.+ -+.+||.||++..+++.|...
T Consensus 12 dl~~~f~~ia~~lg~~----------------W~~lar~Lgls~~~I~~I~~~ 48 (99)
T 1fad_A 12 YLQVAFDIVCDNVGRD----------------WKRLARELKVSEAKMDGIEEK 48 (99)
T ss_dssp HHHHHHHHHHHHHHHH----------------HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHCCCHHHHHHHHHH
T ss_conf 7999999999988784----------------999999939199999999987
No 243
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=20.83 E-value=23 Score=11.34 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6898878863268413078897620121101677878999998------6249999999999999997500
Q 537021.9.peg.7 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFAD 758 (1033)
Q Consensus 694 Qvm~ia~~~ag~~~~ead~lRra~~kk~~~~~~~~~~~f~~g~------~~~g~~~~~a~~i~~~i~~f~~ 758 (1033)
.|++..+.+.|++|.||- +|+++| ++.|++.+.|+++-..++..|+
T Consensus 72 ~vIK~VR~it~LgLkEAK-------------------~lVE~aP~~~~viKe~vsKeeAE~iK~kLe~aGA 123 (128)
T 1dd3_A 72 QVIKVVREITGLGLKEAK-------------------DLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGA 123 (128)
T ss_dssp HHHHHHHHHHCCCHHHHH-------------------HHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCHHHHH-------------------HHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 123457753699889999-------------------9997179840678538899999999999998598
No 244
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=20.80 E-value=23 Score=11.34 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 998899811651774999999999769963899
Q 537021.9.peg.7 40 QQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 (1033)
Q Consensus 40 G~~AiAITD~~nl~Gav~F~~ackk~gIKPIiG 72 (1033)
.++-|-|..+|-. +++..++|++.||++|.=
T Consensus 5 ~~kkvLianrGei--a~ri~ra~relGi~tVav 35 (461)
T 2dzd_A 5 RIRKVLVANRGEI--AIRVFRACTELGIRTVAI 35 (461)
T ss_dssp CCSEEEECSCHHH--HHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEECCCHH--HHHHHHHHHHCCCEEEEE
T ss_conf 6668999897299--999999999879969999
No 245
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413}
Probab=20.77 E-value=14 Score=13.17 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=10.0
Q ss_pred CEEEECCCCCCHHHHHHH
Q ss_conf 889981976796788887
Q 537021.9.peg.7 143 GLIMLTGGSSGPIDRAFF 160 (1033)
Q Consensus 143 gLIvlsg~~~g~i~~~l~ 160 (1033)
.-|+=.||-.|.+...+.
T Consensus 59 ~~VLDiGcG~G~~~~~la 76 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIA 76 (279)
T ss_dssp CEEEEETCTTSHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHH
T ss_conf 999993585859999999
No 246
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=20.65 E-value=22 Score=11.51 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 998877898986063055788899
Q 537021.9.peg.7 339 QRLDFELNVIARMKFSGYFLIVAD 362 (1033)
Q Consensus 339 ~RLe~EL~vI~~~gf~~YFLiV~D 362 (1033)
+|.+.+|....+|||.|.=..+.-
T Consensus 10 ~~y~~qL~~L~eMGF~d~~~n~~A 33 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQA 33 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 999999999999499966999999
No 247
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15
Probab=20.48 E-value=23 Score=11.28 Aligned_cols=20 Identities=10% Similarity=0.443 Sum_probs=8.5
Q ss_pred HHHHHHHHCC--CCCCCCCCCC
Q ss_conf 9999985104--7643344442
Q 537021.9.peg.7 361 ADFIQWAKKN--NIPVGPGRGS 380 (1033)
Q Consensus 361 ~Div~~ak~~--gI~vGpGRGS 380 (1033)
.+|++.+|++ +..+.+-||-
T Consensus 170 ~~L~~~~r~r~P~~~ii~NnG~ 191 (309)
T 2aam_A 170 LEIAEYVRERKPDMLIIPQNGE 191 (309)
T ss_dssp HHHHHHHHHHCTTCEEEEBSCG
T ss_pred HHHHHHHHHHCCCCEEEECCCH
T ss_conf 9999999975899589964757
No 248
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=20.47 E-value=23 Score=11.28 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 9988778989860630557888
Q 537021.9.peg.7 339 QRLDFELNVIARMKFSGYFLIV 360 (1033)
Q Consensus 339 ~RLe~EL~vI~~~gf~~YFLiV 360 (1033)
+|.+.+|....+|||.|-=..+
T Consensus 9 ~~y~~qL~~L~eMGF~D~~~Nl 30 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANL 30 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHH
T ss_conf 8999999999994999669999
No 249
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.43 E-value=23 Score=11.28 Aligned_cols=49 Identities=24% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1457875333656878999999983038021554220778778899999997527998898865431
Q 537021.9.peg.7 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 (1033)
Q Consensus 412 R~~~PDIDiDf~~~~R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g~~~~~~~~~~~~ 478 (1033)
..+=||+--|=+- .++.+.+|.++-|.+ -+.+||.||++..+++.|...
T Consensus 4 ~~~~p~~~~~~~l--~~~~l~~ia~~lg~~----------------W~~la~~Lgl~~~~I~~I~~~ 52 (110)
T 1wxp_A 4 GSSGPDVRRDKPV--TGEQIEVFANKLGEQ----------------WKILAPYLEMKDSEIRQIECD 52 (110)
T ss_dssp CCCCCCCCSSSCC--CHHHHHHHHHHHTTT----------------HHHHTTTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCC--HHHHHHHHHHHHHHH----------------HHHHHHHHCCCHHHHHHHHHH
T ss_conf 8889853236545--099999999999776----------------999999909399999999985
No 250
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=20.36 E-value=23 Score=11.27 Aligned_cols=51 Identities=18% Similarity=0.049 Sum_probs=32.2
Q ss_pred HHHHCHHHHHHHCCCHHHHHHHHHHCCCCEEEEECC---------CHHHHHHHHHHHHHHCCCCE
Q ss_conf 433144476443299899999999789988998116---------51774999999999769963
Q 537021.9.peg.7 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---------NNLFSALEFSQKACAAGIQP 69 (1033)
Q Consensus 14 Lh~hS~ySlldg~~~~e~LV~~A~~~G~~AiAITD~---------~nl~Gav~F~~ackk~gIKP 69 (1033)
|-+|...| ..+++.+++|++.|+.++-|=-. -+--.+-+|-+.++++|++.
T Consensus 4 ~g~h~~~~-----~gl~~a~~~a~~~G~~~~qif~~~p~~w~~~~~~~~~~~~~r~~~~~~~l~~ 63 (285)
T 1qtw_A 4 IGAHVSAA-----GGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTS 63 (285)
T ss_dssp EEEECCCT-----TCHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCG
T ss_pred EEEEECCC-----CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 78877775-----4799999999974999999978997777889999999999999999829997
No 251
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*
Probab=20.32 E-value=17 Score=12.49 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHH
Q ss_conf 38999998877898986063055788899999851047643344442046677655440375633323105
Q 537021.9.peg.7 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 (1033)
Q Consensus 334 ~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~LlF 404 (1033)
.+.+.+|+.+|++- -+--..|++.+ -+|=|=||+-||+++..|.-.= |-++-+-|
T Consensus 115 ~d~i~d~iRk~~E~---cD~l~gf~~~~-----------Sl~GGTGSGlGs~i~e~L~d~y--pk~~~~~~ 169 (475)
T 3cb2_A 115 HEDIFDIIDREADG---SDSLEGFVLCH-----------SIAGGTGSGLGSYLLERLNDRY--PKKLVQTY 169 (475)
T ss_dssp HHHHHHHHHHHHHT---CSSCCEEEEEE-----------ESSSSHHHHHHHHHHHHHHHHS--TTSEEEEE
T ss_pred HHHHHHHHHHHHHC---CCCCCCEEEEE-----------CCCCCCCCCHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 99999999877741---89855631231-----------0588877748899999987648--76247878
No 252
>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1
Probab=20.12 E-value=23 Score=11.23 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 89860630557888999998510476433444420466776554403756333231056762100145787533365687
Q 537021.9.peg.7 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 (1033)
Q Consensus 347 vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT~VDPi~~~LlFERFLnp~R~~~PDIDiDf~~~~ 426 (1033)
+|.+-|.+.-.===+.+|++|+++||.|-|==|-. |+++ +|-+...+ ...-.|.-||-.. ...
T Consensus 88 lvSDAGtP~ISDPG~~LV~~a~~~~i~V~~iPGpS--A~i~-AL~~SGl~--~~~F~F~GFLP~k------------~~~ 150 (242)
T 1wyz_A 88 VISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPS--SIIL-SVMASGFN--GQSFAFHGYLPIE------------PGE 150 (242)
T ss_dssp EECC-------CHHHHHHHHHHHTTCCEEECCCCC--HHHH-HHHHHTSC--SSSEEEEEECCSS------------TTH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC--HHHH-HHHHCCCC--CCCEEEEEECCCC------------HHH
T ss_conf 99268998784962999999995896799854750--5878-98863788--8853899712686------------788
Q ss_pred HHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 8999999983038021554220778778899999997527
Q 537021.9.peg.7 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 (1033)
Q Consensus 427 R~~vi~y~~~kyG~~~va~i~t~~t~~~k~aird~~r~~g 466 (1033)
|.+.++-+.++.-.....+|.--+..+-...+.|+..++|
T Consensus 151 r~k~l~~l~~~~~~~~~t~if~Esp~Ri~~~l~~l~~~~~ 190 (242)
T 1wyz_A 151 RAKKLKTLEQRVYAESQTQLFIETPYRNHKMIEDILQNCR 190 (242)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 9999999987653046628999722789999999999757
No 253
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=20.11 E-value=23 Score=11.23 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=10.9
Q ss_pred HHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 9999851047643344442046
Q 537021.9.peg.7 362 DFIQWAKKNNIPVGPGRGSGAG 383 (1033)
Q Consensus 362 Div~~ak~~gI~vGpGRGSAag 383 (1033)
.|=.||+++|+.|. -||=-.-
T Consensus 17 ~IR~WAr~~G~~Vs-~RGRIp~ 37 (55)
T 2kng_A 17 AIREWARRNGHNVS-TRGRIPA 37 (55)
T ss_dssp HHHHHHHHTTCCCC-SSSCCCH
T ss_pred HHHHHHHHCCCCCC-CCCCCCH
T ss_conf 99999999388378-7898889
No 254
>1vkc_A Putative acetyl transferase; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 1.89A {Pyrococcus furiosus} SCOP: d.108.1.1
Probab=20.10 E-value=23 Score=11.22 Aligned_cols=16 Identities=6% Similarity=-0.172 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHCCCE
Q ss_conf 9999999999818989
Q 537021.9.peg.7 196 RESQVVQLAYTHELPL 211 (1033)
Q Consensus 196 ~~~~l~~lA~~~~iPl 211 (1033)
+...+.+.|++.|+.-
T Consensus 112 Ll~~~~~~a~~~G~~~ 127 (158)
T 1vkc_A 112 LLRKAEEWAKERGAKK 127 (158)
T ss_dssp HHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHCCCCE
T ss_conf 9999999999869988
No 255
>1tvk_B Tubulin beta chain; epothilone, taxol, ligand interactions, cell cycle, structural protein; HET: GDP GTP EP; 2.89A {Bos taurus} SCOP: c.32.1.1 d.79.2.1 PDB: 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* 2hxf_B* 2hxh_B* 2p4n_B* 2wbe_B* 3dco_B* 3edl_B* 1z2b_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* ...
Probab=20.02 E-value=14 Score=13.23 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 8389999988778989860630557888999998510476433444420466776554403
Q 537021.9.peg.7 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 (1033)
Q Consensus 333 ~~~~y~~RLe~EL~vI~~~gf~~YFLiV~Div~~ak~~gI~vGpGRGSAagSLVaY~LgIT 393 (1033)
..+.+.+|+.+|++-- +--+.|++.+ .+ -| |=||+-||.++..|.-.
T Consensus 112 ~~~~i~d~irk~~E~c---D~l~gf~~~~---------Sl-~G-GTGSGlgs~l~e~l~d~ 158 (427)
T 1tvk_B 112 LVDSVLDVVRKESESC---DCLQGFQLTH---------SL-GG-GTGSGMGTLLISKIREE 158 (427)
T ss_dssp TTTTHHHHHHHHHTSS---SCEEEEECEE---------ES-SS-STTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHC---CCCCCEEEEE---------CC-CC-CCCCCHHHHHHHHHHHH
T ss_conf 9999999999998717---8755734340---------04-77-67775888899999876
Done!